Citrus Sinensis ID: 023779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGTCNDILNC
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccccHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEcccccccccccHHccccHHHccccccccHHHHHHcccEcccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccHcccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccc
Coil and Loop (DISEMBL)
mgervvdgdwkptspsngerTVVLLGrtgngksatgnsiLGRKAFkasagssgvtktcemkttvlkdgqvvnvidtpglfdlsagsefvGKEIVKCLGMAKDGIHAFLVVFSVtnrfsqeeetavhrlpnlfgknvFDYMIVVFTGGDDLEDHEKTLEDflghecpkpLKEILQLCDnrcvlfdnktkdeakGTEQVRQLLSLVNSVIvqnggqpytdELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGtcndilnc
Flexible Loop (DISEMBL)
mgervvdgdwkptspsngertvvllgrtgngksatgnsilgrkafkasagssgvtktCEMKttvlkdgqvvnVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAvhrlpnlfgknVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVivqnggqpytdelkrgatelrdkkaevdslkeyskreisklmgqMQESYEDRIKRMAEMRagtcndilnc
Low Complexity Region (SEG)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGTCNDILNC
Disordered region (IsUnstruct)
*****************************************************VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKT********QVRQLLSLVNSVIVQN******************************************************************
Disordered Region (DISOPRED)
*********************VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR***********************************************TCNDILNC
Disordered Region (DISEMBL)
**********KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAF**********KTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGTCNDILNC
Disordered Region (DISPRO)
*****************GERTVVLLGRTGNGKSAT******RKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGTCND*LNC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAGTCNDILNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.927	0.728	0.509	1e-60
O81025	463	Putative protein PHLOEM P	no	no	0.851	0.509	0.474	1e-57
Q9NUV9	329	GTPase IMAP family member	yes	no	0.870	0.732	0.333	5e-37
Q8K3K9	310	GTPase IMAP family member	yes	no	0.711	0.635	0.403	2e-33
Q99JY3	219	GTPase IMAP family member	no	no	0.664	0.840	0.373	2e-28
Q8NHV1	300	GTPase IMAP family member	no	no	0.750	0.693	0.336	2e-28
Q8WWP7	306	GTPase IMAP family member	no	no	0.794	0.718	0.330	6e-27
Q75N62	688	GTPase IMAP family member	no	no	0.649	0.261	0.4	7e-26
Q8ND71	665	GTPase IMAP family member	no	no	0.696	0.290	0.379	8e-26
Q8BWF2	308	GTPase IMAP family member	no	no	0.696	0.626	0.35	6e-25

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 171/261 (65%), Gaps = 4/261 (1%)

Query: 9   DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
           ++  + P   E  +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G
Sbjct: 33  EFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query: 69  QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
            ++NVIDTPGLFDLS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L
Sbjct: 92  PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
             LFG  + DY+IVVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREI 245
           D+ K T+QV +LL L++ V  QN   PYTDE+     E  ++ K E + L  K +S+ ++
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQL 271

Query: 246 SKLMGQMQESYEDRIKRMAEM 266
           + LM ++Q   E  +K MAEM
Sbjct: 272 AALMKELQIMNERNLKAMAEM 292

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 156/236 (66%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
            D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
           LL+ V +V  Q GG PYT +L R   E  D++   +     SK      + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQN 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 149/249 (59%), Gaps = 8/249 (3%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK    A+  
Sbjct: 144 RARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATG-AEQE 199

Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQE 254
            Q  QLL L+  V+ +N    YT+ + + A E  + + +  +++E  + E+ +   +++E
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE--EIQKQTQAMQELHRVELEREKARIRE 257

Query: 255 SYEDRIKRM 263
            YE++I+++
Sbjct: 258 EYEEKIRKL 266

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 6/203 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILGRKAF +   +  +TK CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    KEI +C+ +   G HA L+V  +   ++ EE  A  +L ++F K    +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L    P+ L+E++    NR  LF+NK    A+  EQ RQLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206

Query: 202 SLVNSVIVQNGGQPYTDELKRGA 224
           +LV S++ +NGG+ +T+++   A
Sbjct: 207 TLVQSMVRENGGKYFTNKMYESA 229

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILG K F +   +  +TK CE + +   DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    +EI + + +   G HA L+V  +  R++ EE  A  ++ ++FGK    +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L  + PK  +E++    NR  LF+N+    A+  EQ  QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206

Query: 202 SLVNSVIVQN 211
           +LV S+ + +
Sbjct: 207 TLVQSMFLSS 216

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 126/214 (58%), Gaps = 6/214 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG+GKSAT N+ILG + F +   +  VTK C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                +   KEI +C+  +  G HA ++V  +  R+++EE+  V  +  +FGK+   +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           ++FT  ++LE   ++  DF+  +    LK I++ C NRC  F N  K  +A+   QV++L
Sbjct: 129 ILFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185

Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
           + L+  ++  N G  ++D++ +   E   ++ EV
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKDTEERLKQREEV 219

Homo sapiens (taxid: 9606)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V+DTP +
Sbjct: 28  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86

Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++FG++V  
Sbjct: 87  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 145

Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
           +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A G E   
Sbjct: 146 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 199

Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
           QV QLL +V  +++++ G  Y++E+   A  LR    E + L+  ++R  +++
Sbjct: 200 QVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 251

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 10/190 (5%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++LLGR+G GKSATGN+ILGR AF +   +  VT + +     L D Q V V+DTP  F 
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535

Query: 82  LSAGSE----FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
            + G+E     + +EI  CL + ++G+  F++V  +  RF+QE+E  V +L   F +N+ 
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
            YMIV+FT  +DL D +  L D+  +   K LK+IL+ C+ R   F+NK   E + T QV
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQET-QV 651

Query: 198 RQLLSLVNSV 207
           + LL + NS+
Sbjct: 652 KGLLKIANSL 661

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 10/203 (4%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--- 78
           +VL+GR+G GKSATGNSILG   F +   +  VTKT +       DGQ V V+DTP    
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           + D+      + +E+ +CL   + G   F++VF +  RF++E++TAV +L  +FG +   
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTK 558

Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           Y I++FT  +DL      LEDF+ +   K L+ I + C  R   F+NK   +A+ T QV+
Sbjct: 559 YAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QVK 615

Query: 199 QLLSLVNSVIVQNG--GQPYTDE 219
            LL+ VN +  ++G  G P+T E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHTQE 638

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G++G GKSATGNSIL R AF++      VT+T + +T    +G+ + V+DTP +F+
Sbjct: 29  ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             A ++ + K+I  C  +   G H  L+V  +  RF+ E+  AV  +  +FG  V  +MI
Sbjct: 88  SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           V+FT  +DLE  EK+LE+F+ H   + L+ + Q C  R   F+N+   +E +G  Q+ +L
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG--QLAEL 202

Query: 201 LSLVNSVIVQNGGQPYTDEL 220
           ++LV  +  +  G  ++++L
Sbjct: 203 MALVRRLEQECEGSFHSNDL 222

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255539412	339	aig1, putative [Ricinus communis] gi|223	0.960	0.784	0.707	1e-107
296089429	345	unnamed protein product [Vitis vinifera]	0.960	0.771	0.692	1e-106
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.960	0.782	0.692	1e-106
224146305	335	predicted protein [Populus trichocarpa]	0.960	0.794	0.671	1e-102
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.942	0.745	0.675	1e-100
363814318	336	uncharacterized protein LOC100807910 [Gl	0.960	0.791	0.666	1e-100
224136037	259	predicted protein [Populus trichocarpa]	0.916	0.980	0.687	6e-98
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.960	0.780	0.649	3e-93
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.953	0.767	0.607	8e-92
388500386	335	unknown [Lotus japonicus]	0.956	0.791	0.607	2e-90

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/270 (70%), Positives = 220/270 (81%), Gaps = 4/270 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  +FDYMIVVFTGGD+LED+++TLED+LG ECP+PL+EIL LC NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDE K  EQV QLLSLVN VI +NGGQPYTD    ELK  A +LRD++ EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           LK YSK EI +L  QM  SYE+++KR+ EM
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEM 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/270 (69%), Positives = 227/270 (84%), Gaps = 4/270 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTD    ELK+GA +LRD+  EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           L+ YSKREI  L  QM +SYE+++KR+ EM
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEM 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/270 (69%), Positives = 227/270 (84%), Gaps = 4/270 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTD    ELK+GA +LRD+  EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           L+ YSKREI  L  QM +SYE+++KR+ EM
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEM 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/271 (67%), Positives = 220/271 (81%), Gaps = 5/271 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+  SPSNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L LC+NR 
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
           VLF+NKTKD  KG EQV++LLSLVN VI QNGGQPY+DEL    ++G    R ++ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 237 LK-EYSKREISKLMGQMQESYEDRIKRMAEM 266
           LK  +S  EIS+L  QM+  YED++KR+ +M
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDM 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/265 (67%), Positives = 220/265 (83%), Gaps = 4/265 (1%)

Query: 6   VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           +D DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            +GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++EEETA+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
             L  LFG  + DYMIVVFTGGD+LE++++TLED+LG ECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYS 241
           KTKDE K   QV+QLLS VN V+ +NGG+PYTDE    LK+GA EL +++ EVDSLK YS
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259

Query: 242 KREISKLMGQMQESYEDRIKRMAEM 266
           K EI +   QMQ++Y++++KR+ EM
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEM 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/270 (66%), Positives = 219/270 (81%), Gaps = 4/270 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           +TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EETA+  L  LFG  + DYMIVVFTGGD+LE++ +TLED+LG ECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDS 236
           VLFDNKTKDE K   QV+QLLS VN+V+ +NGG+PYTDE    LK+GA EL +++ EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           LK YSK EI K   QMQ++Y+D++KR+ E+
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 213/259 (82%), Gaps = 5/259 (1%)

Query: 13  TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
            SPSNG RTVVL+GRTGNGKSATGNSILG+KAFK+ A SSGVT TCE+++TVL DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
           VIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQEEE A+  L  LF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
           G  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L+LC+NR VLFDNKTKD  K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 193 GTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDSLK-EYSKREISK 247
             EQ+++LLSLVN VI QN GQPY+DEL    ++G    RD++ EV+SLK   S REIS+
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISE 240

Query: 248 LMGQMQESYEDRIKRMAEM 266
           L  QMQ  YE+++KR+ EM
Sbjct: 241 LKEQMQIQYEEQLKRVTEM 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/274 (64%), Positives = 220/274 (80%), Gaps = 8/274 (2%)

Query: 1   MGERVVDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56
           MG   ++ DW+   TSP+NG   RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA LVVFSV  R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176
           FS EEE A+  L  LFG  + +YMIVVFTGGD+LE++E+TLED+LG  CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKA 232
            NRCVLFDNKTKDE +   QV+QLLSLVN +++QNGGQPY+D    ELK GA +LRD++ 
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           EVDSL+ Y+++E+ +L  QM  SY++++KR+ EM
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEM 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  342 bits (878), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 164/270 (60%), Positives = 214/270 (79%), Gaps = 6/270 (2%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+    +NG RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6   MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ+++VIDTPGLFD SA  EF+G EIVKC+ MAKDGIHA LVV SV  RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           E+ AV  L   FG  + DYM++VFTGGDDLED+E+TLED+LG +CP+PLK+IL +C NR 
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNK+KD  K  +Q++QLLSLVN V+  NGG+PYTD    ELK+GA +LR++  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           L  YSK+EI +L  QMQ+SYE++++R+ E+
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEV 273

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/270 (60%), Positives = 213/270 (78%), Gaps = 5/270 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG    D DW+ TS +N  RTVV +GRTGNGKSATGNSILG+K FK+ A S GVT +CE 
Sbjct: 1   MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
            T  L DGQ VNVIDTPGLFD+SAGS+FVGKEIV C+ +AKDGIHA +VVFSV  RFSQE
Sbjct: 61  HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           E TA+  L  LFG  ++DY +VVFTGGD+LE+ ++TLED+LG +CP+PLK++L LC+NR 
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           +LFDNKTKDE K +EQV+QL S VN V+ QNGG+PYTD    ELK+GA +L +++++V+S
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
           L+ +S +EI +   Q +++Y+D++KR+AEM
Sbjct: 240 LEGHSNKEILEYKKQAKQAYDDQLKRIAEM 269

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.956	0.774	0.559	2.7e-77
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.884	0.694	0.528	2.7e-61
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.898	0.800	0.476	8.1e-60
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.927	0.764	0.480	2.5e-58
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.927	0.788	0.446	2.8e-57
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.888	0.736	0.446	1.8e-55
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.851	0.509	0.474	2.9e-55
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.909	0.837	0.439	3.5e-52
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.906	0.747	0.436	3.5e-52
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.880	0.619	0.440	2.4e-51

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 151/270 (55%), Positives = 205/270 (75%)

Query:     1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
             MG  +++ DW+  S SN +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
             +  V +DG ++NV+DTPGLFDLS  ++F+GKEIV+C+ +A+DGIHA L+VFSV  R ++E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSV-RRLAEE 124

Query:   121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
             E+T +  L  LFG  + DYMIVVFTGGD+LE++E+TLE++L   CP+ LKEIL +CDNR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
             VLF+NKT D+ K  EQV++LLSLV SV+ QN G+PY+DEL    +  A +LRD+K EV+ 
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244

Query:   237 LKEYSKREISKLMGQMQESYEDRIKRMAEM 266
             L+ YS  EI +   Q+  SY+ ++ R+ EM
Sbjct:   245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEM 274

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 131/248 (52%), Positives = 166/248 (66%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             LS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L  LFG  + DY+I
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164

Query:   142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
             VVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTKD+ K T+QV +LL
Sbjct:   165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224

Query:   202 SLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYED 258
              L++ V  QN   PYTDE+     E  ++ K E + L  K +S+ +++ LM ++Q   E 
Sbjct:   225 KLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNER 284

Query:   259 RIKRMAEM 266
              +K MAEM
Sbjct:   285 NLKAMAEM 292

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 121/254 (47%), Positives = 172/254 (67%)

Query:    16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
             S     +VL+GRTGNGKSATGNS++G+K F + A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
             TPGLFDLS  +E++ KEIV+CL +A+ GIHA L+V S   R +QEEE  +  L  LFG  
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
             + DY++VVFTGGD LE+ ++TLED+LG +CP  +KE++++  NR V+ DNKT DE K  E
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192

Query:   196 QVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYSKREISKLMGQ 251
             QV +LLSLV+ +     G+ YTD+    +K  + +LR    E++S K YS+   +++  Q
Sbjct:   193 QVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMKNQ 251

Query:   252 MQESYEDRIKRMAE 265
                 Y++ +K+M+E
Sbjct:   252 SLILYKENLKQMSE 265

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 125/260 (48%), Positives = 169/260 (65%)

Query:    10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ 69
             W+  S S   + VVL+GRTGNGKSATGNSI+GRK F++   + GVT  C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129
             ++NVIDTPGLFDL+  +EF+ KEIV CL +A++G+HA ++V S++ R SQEEE A+  L 
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145

Query:   130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKD 189
              LFG  + DY+IVVFT GD LED   TLED+L + CP+ LK +L+LC  R V+FDN+TKD
Sbjct:   146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKD 205

Query:   190 EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE--LRDKKAEVD-SLKEYSKREIS 246
             E    +QV+QLL  V ++  + GG P+TD + R   E   R K+ E +   K  +  E +
Sbjct:   206 EGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEEKA 265

Query:   247 KLMGQMQESYEDRIKRMAEM 266
              L  Q+  SY   +  MA M
Sbjct:   266 ALKKQLDMSYSQNMNMMALM 285

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 117/262 (44%), Positives = 173/262 (66%)

Query:     9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
             D +  S S   + +VL+GRTGNGKSATGNS++G++ F++   ++GVT  CE    V   G
Sbjct:     9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68

Query:    69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
               +NVIDTPGLFDLS  +E++ +EI+ CL +A+DG+HA ++V SV  R SQEEE  ++ L
Sbjct:    69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128

Query:   129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
               +FG  + DY++V+FTGGD+LE +  TL+D+L   CP+ LK +L+LC  R +LFDN+T 
Sbjct:   129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188

Query:   189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG----ATELRDKKAEVDSLKEYSKRE 244
             DE K  +QV++LL+ V ++     G P+TDE+ R     A  LR+++ EV+S K+ +  E
Sbjct:   189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES-KDLAAAE 247

Query:   245 ISKLMGQMQESYEDRIKRMAEM 266
             I K     Q  ++  +  MAEM
Sbjct:   248 IEKWKKHYQTEHDKNMNMMAEM 269

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/251 (44%), Positives = 167/251 (66%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKSATGNS++G+  F + A ++GVTKTC+    V   G  +NVIDTPGL
Sbjct:    14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
             FDLS  +EF+ KEI+ CL +A+ G+H  ++V SV  R +QEEE  +  L  LFG  + DY
Sbjct:    74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
             +IV+FTGGD+LE + +TL+D+    CP  LK +L LCD+R V+F+N TKD+ K  EQV+Q
Sbjct:   134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQ 193

Query:   200 LLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
              L+LV  V  +N G+P+      E+K     L+ +K  V++     + E++K+  ++Q  
Sbjct:   194 FLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAELAKMKKELQME 252

Query:   256 YEDRIKRMAEM 266
             ++ R+ +M +M
Sbjct:   253 HDTRMSQMEDM 263

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 112/236 (47%), Positives = 156/236 (66%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
              D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
              IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
             LL+ V +V  Q GG PYT +L R   E  D++   +     SK      + +MQ++
Sbjct:   186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQN 241

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 117/266 (43%), Positives = 170/266 (63%)

Query:    15 PSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
             PS  E  R +VL+G TGNGKS+TGNS++G++ F          KTC+ KT    DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIIN 60

Query:    73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
             VIDTPGLFDLS  ++++ KEI+ CL +   G+HA ++V SV     +EEE A+++L  LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
             G  + DY++V+FTGGD LE   KTL+D+L   CP+ LK +L+LC  R VLF+NKT DE K
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVK 180

Query:   193 GTEQVRQLLSLVNSVIVQNGGQP-YTDEL----KRGATELRDKKAEVDSLKEYSKREISK 247
               EQV+QLL+ V ++   NGG+  +T+E     KR    L +++ EV S K+    E+ +
Sbjct:   181 KIEQVKQLLAHVEAIENLNGGKALFTEENDLNEKRQGEMLMEQEMEVQS-KKPENTEVEE 239

Query:   248 LMGQMQESYEDRIKRMAEMRAGTCND 273
             +  Q++ SY  ++  MA+M   T  +
Sbjct:   240 MKKQLEISYGQQMNMMAQMVEDTLKE 265

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 116/266 (43%), Positives = 177/266 (66%)

Query:     6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
             V+ DWKP      ERT+VLLGRTGNGKSATGNSILG+  F++ A    +TK C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+CL +AK GI A L+VFS+ NR ++EE++ +
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
               L  LFG  + DY+IVVFT  D LE  E TL+D+L  +CP+  +EIL+ CD+R VLFDN
Sbjct:   124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE-FQEILEECDDRKVLFDN 180

Query:   186 K-TKDEAKGTEQVRQLLSLVNSVIVQNGGQPY----TDELKRGATELRDKKAEVDSLKEY 240
                   +K   QV  LL+LV  +  +N G+ Y    + EL+     +++K+ +++ +K +
Sbjct:   181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGW 240

Query:   241 S-KREISKLMGQMQESYEDRIKRMAE 265
             S K+EIS++  ++++S+ + ++ + E
Sbjct:   241 SSKQEISQMKKELEKSHNEMLEGIKE 266

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 111/252 (44%), Positives = 173/252 (68%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             RT++L+GR+GNGKSATGNSILGRKAFK+   +SGVT  CE++++ L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
             F LS  +EF  +EI++C  + K+GI A L+VFS+ NR ++EE++A+  L  LFG  + DY
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVR 198
             MIVVFT  D LED   T E++L  + P   KEIL+ C++R VLF N++    ++  +QV+
Sbjct:   168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225

Query:   199 QLLSLVNSVIVQNGGQPYTD---ELKRGATELRDKKAEVDSLKE-YSKREISKLMGQMQE 254
             +LL+ V  +   NG     D   E++   T  + K+ E+  +K  Y+++E+ ++   M++
Sbjct:   226 ELLNYVEEIARLNGKSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDMEK 285

Query:   255 SYEDR-IKRMAE 265
             S+E++ +++M E
Sbjct:   286 SFENQQLRQMME 297

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021940001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-94
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	7e-90
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-10
cd00880	161	cd00880, Era_like, E	2e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	2e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-06
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-05
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-05
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	0.002
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.003
pfam08477	116	pfam08477, Miro, Miro-like protein	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  276 bits (707), Expect = 4e-94
 Identities = 113/216 (52%), Positives = 157/216 (72%), Gaps = 9/216 (4%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGNSILGRKAF++   + GVTKTC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FDLS  ++F+ KEI++CL +A+ G HA L+V S+  RF++EEE A+  L  LFG  + DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
           MIVVFT  DDLED   +L+D+L   CP+ LKE+L+ C  R VLF+NK  D  +  EQV+Q
Sbjct: 119 MIVVFTRKDDLED--DSLDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 200 LLSLVNSVIVQNGGQPYTDEL----KRGATELRDKK 231
           LL+LV +++ +NGG+PYT++L    K     LR+K+
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEEGERLREKQ 211

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  264 bits (678), Expect = 7e-90
 Identities = 103/207 (49%), Positives = 144/207 (69%), Gaps = 6/207 (2%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGN+ILGRK F++   +SGVTKTC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FD S   E + KEI++CL ++  G HAFL+V  +  RF++EEE AV  L  LFG+ V D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPL-GRFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IV+FT GDDLE    +LED+L  +  + LK +L+ C  R V F+NK K   +  +QV++
Sbjct: 119 TIVLFTRGDDLEG--GSLEDYL-EDSCEALKRLLEKCGGRYVAFNNKAKGREQ-EQQVKE 174

Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATE 226
           LL+ V  ++ +NGG+PYT+E+   A E
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
          T+++LG+TG GKS+T NSI G +    SA  S   +  E+  TV  DG  +N+IDTPGL 
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81 DLSAGS 86
          +     
Sbjct: 91 ESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
           V++GR G GKS+  N++LG +  + S    G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                 F G    +   +   G    L+V   T+R S EE+  +  L  L  + +   +I
Sbjct: 60  ------FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PII 110

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           +V    D LE+ E              L+E+ ++          KT +   G +++ + L
Sbjct: 111 LVGNKIDLLEEREVEEL--------LRLEELAKILGVPVFEVSAKTGE---GVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82
            + GR   GKS+  N++LG+     S    G T+    K   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142
                   +E  +          A LV+  V +  +  EE A   L    GK V    ++
Sbjct: 60  GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDDLEDHEK 155
           V    D + + E+
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            +++LG++G GKSAT NSI G   F   A   G T   E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176

Query: 81  DLSAGSE 87
             S+ S+
Sbjct: 177 -KSSASD 182

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+GR   GKS   N++ G K    S    G T+  +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           +  A      +   + L   ++     L+V   +   ++++E  +  L  L  K     +
Sbjct: 58  E-GASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKK----PI 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTP 77
            + ++G    GKS   N++LG +        +GVT T  + T +   L  G  V ++DTP
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54

Query: 78  GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
           GL         + +  +           A + V S     ++ E   +  +    GK +F
Sbjct: 55  GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107

Query: 138 DYMIVVFTGGDDLEDHE 154
                V    D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 25/136 (18%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           T++++G+ G GKS+T NSI+G +    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40  TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFL------VVFSVTN----RFSQEEETAVHRLP 129
            +    ++            A + I  FL      V+  V      R    +   +  + 
Sbjct: 97  IEGGYIND-----------QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAIT 145

Query: 130 NLFGKNVFDYMIVVFT 145
           + FGK+++   +VV T
Sbjct: 146 DSFGKDIWRKSLVVLT 161

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           VVLLG +G GKS+  N         ++  +SG   T E   +V  +   + V D     D
Sbjct: 3   VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEET 123
                +        C+ +      A+++V+SVT+R  F +  E 
Sbjct: 62  GMWLEDS-------CMQV----GDAYVIVYSVTDRSSFEKASEL 94

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDT 76
           E  +V++G    GKS   N +LG K         G T+     T + +DG+    N++DT
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDT 58

Query: 77  PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136
            G  D  A      + +            + L VF +       EE    +   +     
Sbjct: 59  AGQEDYDAIRRLYYRAVE-----------SSLRVFDIVILVLDVEEILEKQTKEIIHHAE 107

Query: 137 FDYMIVVFTGGDDLED 152
               I++     DL D
Sbjct: 108 SGVPIILVGNKIDLRD 123

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDTPGL 79
           + +LG +G GKSA     L ++       +     + ++      DG+ V+  + DTPG 
Sbjct: 2   IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTI----DGEQVSLEIQDTPGQ 57

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
                        + + L  A      F++V+S+T+R S +  + + +L
Sbjct: 58  QQNEDPES-----LERSLRWA----DGFVLVYSITDRSSFDVVSQLLQL 97

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTP 77
          + TV L+G    GK+   N++ G  A +      GVT   E K   LK  G  + ++D P
Sbjct: 3  KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 78 GLFDLSAGSE 87
          G + L+A SE
Sbjct: 59 GTYSLTAYSE 68

Length = 653

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           VV++G  G+GKS+  + ++G +         G          V  D  ++N+ D      
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQG-DTLAVDTLEVDGDTGLLNIWDF----- 55

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYM 140
              G E +  E +  +  A     A L+V+ +T+R S  E + +   LPNL        +
Sbjct: 56  --GGREELKFEHIIFMKWAD----AILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPV 109

Query: 141 IVV 143
           I+V
Sbjct: 110 ILV 112

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
COG1159	298	Era GTPase [General function prediction only]	99.94
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.88
PRK00089	292	era GTPase Era; Reviewed	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.86
PRK15494	339	era GTPase Era; Provisional	99.85
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.82
PRK12298	390	obgE GTPase CgtA; Reviewed	99.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.81
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
COG3596	296	Predicted GTPase [General function prediction only	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.8
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.79
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.79
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
PRK12299	335	obgE GTPase CgtA; Reviewed	99.77
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.77
PRK03003	472	GTP-binding protein Der; Reviewed	99.77
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.77
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.77
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.77
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.77
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.76
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.76
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.76
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.76
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.76
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.76
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.76
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.76
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.76
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.76
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.76
PRK00093	435	GTP-binding protein Der; Reviewed	99.76
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.75
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.75
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.75
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.75
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.75
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.75
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.75
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.75
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.75
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.75
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.75
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.75
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.75
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.75
COG0486	454	ThdF Predicted GTPase [General function prediction	99.75
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.75
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.74
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.74
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.74
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.74
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.74
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.74
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.74
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.74
PLN03110	216	Rab GTPase; Provisional	99.74
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.74
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.74
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.74
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.73
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.73
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.73
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.73
PRK04213	201	GTP-binding protein; Provisional	99.73
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.73
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.73
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.73
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.72
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.72
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.72
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.72
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.72
PTZ00133	182	ADP-ribosylation factor; Provisional	99.72
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.72
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.72
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.72
PRK12296	500	obgE GTPase CgtA; Reviewed	99.72
PLN00223	181	ADP-ribosylation factor; Provisional	99.72
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.72
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.72
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.72
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.72
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.72
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.72
PLN03118	211	Rab family protein; Provisional	99.72
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.72
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.72
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.71
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.71
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.71
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.71
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.71
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.71
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.71
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.71
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.71
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.71
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.71
PRK11058	426	GTPase HflX; Provisional	99.71
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.71
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.7
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.7
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.7
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.7
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.7
PTZ00369	189	Ras-like protein; Provisional	99.7
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.7
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.7
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.7
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.7
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.7
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.69
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.69
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.69
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.69
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.69
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.69
PLN03108	210	Rab family protein; Provisional	99.68
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.68
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.68
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.68
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.68
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.68
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.68
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.68
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.68
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.67
KOG0394	210	consensus Ras-related GTPase [General function pre	99.67
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.67
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.67
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.67
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.67
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.67
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.67
PRK09866	741	hypothetical protein; Provisional	99.67
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.67
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.66
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.66
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.66
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.66
PRK05306	787	infB translation initiation factor IF-2; Validated	99.66
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.66
COG2262	411	HflX GTPases [General function prediction only]	99.66
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.65
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.65
CHL00189	742	infB translation initiation factor 2; Provisional	99.65
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.64
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.64
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.64
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.64
PRK12735	396	elongation factor Tu; Reviewed	99.64
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.63
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.63
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.63
CHL00071	409	tufA elongation factor Tu	99.62
PRK12317	425	elongation factor 1-alpha; Reviewed	99.62
PRK12736	394	elongation factor Tu; Reviewed	99.62
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.61
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.61
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.61
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.61
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.6
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.6
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.6
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.6
PRK00007	693	elongation factor G; Reviewed	99.6
PRK12739	691	elongation factor G; Reviewed	99.6
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.6
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.59
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.59
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.59
PRK00049	396	elongation factor Tu; Reviewed	99.58
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.58
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.57
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.57
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.56
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.56
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.56
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.56
PRK10218	607	GTP-binding protein; Provisional	99.56
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.56
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.55
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.55
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.55
PRK05433	600	GTP-binding protein LepA; Provisional	99.55
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.55
PLN00023	334	GTP-binding protein; Provisional	99.55
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.55
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.54
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.54
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.54
PRK04004	586	translation initiation factor IF-2; Validated	99.54
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.54
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.54
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.54
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.53
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.53
COG0536	369	Obg Predicted GTPase [General function prediction	99.53
PRK13351	687	elongation factor G; Reviewed	99.53
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.52
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.52
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.52
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.52
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.52
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.52
COG1163	365	DRG Predicted GTPase [General function prediction	99.51
COG1100	219	GTPase SAR1 and related small G proteins [General	99.5
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.5
COG2229	187	Predicted GTPase [General function prediction only	99.48
PLN03126	478	Elongation factor Tu; Provisional	99.47
PTZ00141	446	elongation factor 1- alpha; Provisional	99.47
KOG1145	683	consensus Mitochondrial translation initiation fac	99.47
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.46
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.46
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.46
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.46
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.44
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.44
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.39
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.39
PRK09602	396	translation-associated GTPase; Reviewed	99.37
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.37
PRK09601	364	GTP-binding protein YchF; Reviewed	99.37
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.36
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.35
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.35
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.32
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.31
KOG0395	196	consensus Ras-related GTPase [General function pre	99.31
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.3
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.3
PTZ00416	836	elongation factor 2; Provisional	99.29
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.29
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.27
PRK12740	668	elongation factor G; Reviewed	99.26
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.26
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.24
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.23
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.23
PTZ00258	390	GTP-binding protein; Provisional	99.23
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.22
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.22
PRK07560	731	elongation factor EF-2; Reviewed	99.2
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.19
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.19
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.19
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.19
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.18
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.17
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.17
PRK13768	253	GTPase; Provisional	99.16
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.15
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.14
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.1
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.1
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	99.09
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.08
KOG0410	410	consensus Predicted GTP binding protein [General f	99.08
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.06
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.06
KOG0465	721	consensus Mitochondrial elongation factor [Transla	99.06
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.05
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.05
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.04
KOG2486	320	consensus Predicted GTPase [General function predi	99.02
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.01
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.01
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.0
PTZ00099	176	rab6; Provisional	99.0
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.97
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.97
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.96
PRK14845	1049	translation initiation factor IF-2; Provisional	98.95
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.94
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.92
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.92
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.91
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.9
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.89
KOG0090	238	consensus Signal recognition particle receptor, be	98.89
COG0488	530	Uup ATPase components of ABC transporters with dup	98.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.87
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.87
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.86
PRK12288	347	GTPase RsgA; Reviewed	98.85
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.84
COG1162	301	Predicted GTPases [General function prediction onl	98.82
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.81
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.81
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.81
PRK12289	352	GTPase RsgA; Reviewed	98.81
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.8
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.79
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.77
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.76
KOG1673	205	consensus Ras GTPases [General function prediction	98.75
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.75
PRK00098	298	GTPase RsgA; Reviewed	98.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.74
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.74
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.74
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.73
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.71
COG1161	322	Predicted GTPases [General function prediction onl	98.7
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.69
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.69
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.69
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.69
PRK10416	318	signal recognition particle-docking protein FtsY;	98.69
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.67
COG0488	530	Uup ATPase components of ABC transporters with dup	98.64
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.64
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.63
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.63
PRK14974	336	cell division protein FtsY; Provisional	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.62
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.62
KOG0460	449	consensus Mitochondrial translation elongation fac	98.55
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.54
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.53
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.53
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.53
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.52
PRK13796	365	GTPase YqeH; Provisional	98.49
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.49
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.48
cd03112	158	CobW_like The function of this protein family is u	98.46
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.44
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.43
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.42
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.39
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.37
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.37
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.35
PRK10867	433	signal recognition particle protein; Provisional	98.34
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.34
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.34
COG3523	1188	IcmF Type VI protein secretion system component Va	98.32
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.3
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.28
KOG1143	591	consensus Predicted translation elongation factor	98.25
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.24
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.24
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.23
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.23
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.22
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.21
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.21
cd03246	173	ABCC_Protease_Secretion This family represents the	98.2
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.2
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.19
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.18
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.17
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.17
TIGR00959	428	ffh signal recognition particle protein. This mode	98.16
COG4988	559	CydD ABC-type transport system involved in cytochr	98.13
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.12
PRK01889	356	GTPase RsgA; Reviewed	98.12
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.12
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.11
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.11
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.11
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.1
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.08
KOG2484	435	consensus GTPase [General function prediction only	98.07
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.06
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.06
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.05
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.04
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.04
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.04
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.03
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.02
cd03114	148	ArgK-like The function of this protein family is u	98.01
COG4559	259	ABC-type hemin transport system, ATPase component	98.01
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.01
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.01
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.99
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.98
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.98
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.96
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.96
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.95
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.94
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	97.94
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.94
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.93
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.93
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.92
PRK11147	635	ABC transporter ATPase component; Reviewed	97.92
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.91
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.91
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.91
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.9
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.89
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.89
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.87
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.87
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.86
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.85
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.85
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.85
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.85
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.84
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.84
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.84
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.84
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.83
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.82
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.82
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.82
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.82
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.81
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.81
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.81
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.8
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.8
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.8
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.79
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.79
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.79
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.79
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.79
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.79
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.78
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.78
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.78
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.78
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.78
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.78
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.77
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.77
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.77
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.76
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.76
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.75
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.74
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.74
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.74
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.74
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.73
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.73
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.73
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.73
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.73
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.73
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	97.73
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.72
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.72

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=8.8e-36  Score=238.63  Aligned_cols=204  Identities=42%  Similarity=0.741  Sum_probs=170.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|.+|+||||++|+|+|...|.++.+..+.|..+..... .+.+..+.|||||||.++...++.+..++..++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            58999999999999999999999999988777778888877766 58999999999999999888788888899999888


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +.+++|+||||+++. +++..+...++.+...||.+++++++||+|++|...+  ..+++++....+..++++++.|+.|
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence            889999999999999 9999999999999999999999999999999998887  6799999854456799999999999


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL  227 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (277)
                      |+.|++......+...++.+|++.|..++.++++.+|.+++++.+++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~  204 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER  204 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            999999844444456899999999999999999999999998877764

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=3.9e-34  Score=227.06  Aligned_cols=195  Identities=51%  Similarity=0.855  Sum_probs=172.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|.+|+|||||+|+|+|...+.++....+.|..+...... +.+..+.||||||+++.......+..++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            479999999999999999999999887776666777777666554 6888999999999999877666777888888887


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +.+++|++|+|+++. +++..+...++.+++.||..+++++++|+|++|.+..  ..+++++.. ....++.+++.|+.+
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence            789999999999998 5999999999999999998888999999999999987  799999886 557899999999999


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                      |+.|++... ++....++.+|++.|..+++++++.+|.+++
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~  195 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM  195 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999987 7788899999999999999999888888754

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1159 Era GTPase [General function prediction only]

Probab=99.94  E-value=7.2e-26  Score=182.45  Aligned_cols=179  Identities=21%  Similarity=0.289  Sum_probs=144.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++..|+++|+||+|||||+|+|+|...  +-.++.++|++.....+.+.+..++.++||||++.+   ...+.+.+.+..
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a   79 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAA   79 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHH
Confidence            347899999999999999999999998  778889999999998888888999999999999985   455667788888


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|+++||+|+...++..+...++.++.. .    .|+++++||+|...+  .. +..+.+.         ....
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-~----~pvil~iNKID~~~~--~~~l~~~~~~---------~~~~  143 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-K----TPVILVVNKIDKVKP--KTVLLKLIAF---------LKKL  143 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-C----CCeEEEEEccccCCc--HHHHHHHHHH---------HHhh
Confidence            8889999999999999977999999988888872 1    289999999998877  33 3333222         2211


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR  222 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~  222 (277)
                      .    .|....+.||..+.+++.|++.+...+++ +..+|++++..
T Consensus       144 ~----~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it  184 (298)
T COG1159         144 L----PFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT  184 (298)
T ss_pred             C----CcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence            1    23344567899999999999999999987 45567777743

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.91  E-value=3e-22  Score=165.06  Aligned_cols=192  Identities=22%  Similarity=0.297  Sum_probs=134.4

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .+..+..+|+++|.+|+|||||+|+|+|...+..... .+.+....... ....+..+.||||||+.+...........+
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~-~~~~G~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVS-RTRAGFTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEE-EEECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence            3445678999999999999999999999886433221 12222222222 235788999999999998543223322222


Q ss_pred             HHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ..++  ...++|++|||.+++ .+++..+...++.++..||.++++++||++||+|...+.+.++++|+.. ....++.+
T Consensus       111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~  187 (313)
T TIGR00991       111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV  187 (313)
T ss_pred             HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence            2222  124799999997765 4888889999999999999999999999999999886556889999986 77778888


Q ss_pred             HhhcC-----------CeEEEEeCCCcccccCh---------hHHHHHHHHHHHHHhh
Q 023779          173 LQLCD-----------NRCVLFDNKTKDEAKGT---------EQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~-----------~~~~~~~~~~~~s~~~~---------~~~~~L~~~i~~~~~~  210 (277)
                      +....           ..+...+|...|.....         .-+..|+..|-.+...
T Consensus       188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~  245 (313)
T TIGR00991       188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN  245 (313)
T ss_pred             HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence            77533           23455555544432111         2477888888887654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.89  E-value=5.1e-22  Score=175.93  Aligned_cols=165  Identities=21%  Similarity=0.270  Sum_probs=123.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .+-..+|+|+|.+|+|||||+|+|+|...+.+..... .|+.+..... ...+..+.||||||+.++.... ....++..
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq-~~neeILk  191 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQ-SKNEKILS  191 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEE-EECCceEEEEECCCCCccccch-HHHHHHHH
Confidence            3445899999999999999999999998776654333 3444433322 3578899999999999875432 22334444


Q ss_pred             HHhhc--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc-----ccHHHHhcccCCc
Q 023779           96 CLGMA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPK  167 (277)
Q Consensus        96 ~~~~~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~-----~~l~~~l~~~~~~  167 (277)
                      .+..+  ..++|++|||+++. .+...++...++.+.++||.++|+++|||+||+|...+.|     .++++|+.. ...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~  270 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH  270 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence            33222  24689999999886 2333467789999999999999999999999999986422     589999986 778


Q ss_pred             hHHHHHhhcCCeEEEEe
Q 023779          168 PLKEILQLCDNRCVLFD  184 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~  184 (277)
                      .++.++..|..++..|+
T Consensus       271 ~Lq~~Irq~~g~~~l~n  287 (763)
T TIGR00993       271 IVQQAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHHHHhcCcceecc
Confidence            89999999998766665

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00436 era GTP-binding protein Era

Probab=99.88  E-value=1.4e-21  Score=162.50  Aligned_cols=173  Identities=18%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+|+|++|||||||+|+|+|...  +..++.+.|+...........+..+.+|||||+....   ..+...+...+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            699999999999999999999875  2234444555544444444566789999999998642   22333444444555


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      +..+|++++|+|++...+. +..++..+.. .+    .|+++|+||+|....  ..+.+..        ..+....+.  
T Consensus        77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~--  138 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDF--  138 (270)
T ss_pred             HhhCCEEEEEEECCCCCch-HHHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCC--
Confidence            6788999999999844333 3444455544 22    389999999998644  3332222        222222121  


Q ss_pred             EEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                         ....+.||+.+.|+++|++.+...++. +...|+.++
T Consensus       139 ---~~v~~iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~  174 (270)
T TIGR00436       139 ---KDIVPISALTGDNTSFLAAFIEVHLPE-GPFRYPEDY  174 (270)
T ss_pred             ---CceEEEecCCCCCHHHHHHHHHHhCCC-CCCCCCCcc
Confidence               123466888999999999999999866 344466554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=3.6e-21  Score=162.07  Aligned_cols=177  Identities=20%  Similarity=0.319  Sum_probs=119.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +..|+|+|++|||||||+|+|+|...  +..++.+.|+...........+..+.++||||+.+..   ..+.+.+.....
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence            47899999999999999999999876  3333444555544444433455789999999998643   233444455555


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      .+...+|++++|+|++..++..+..++..+...     ..|+++|+||+|..... ..+...+..        +....+ 
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~-  144 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLLEE--------LSELMD-  144 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCC-
Confidence            566788999999999865776666666665531     23999999999987321 233333332        222222 


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                          +....+.|+..+.++++|++.+...++. +...|+.++
T Consensus       145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~-~~~~y~~~~  181 (292)
T PRK00089        145 ----FAEIVPISALKGDNVDELLDVIAKYLPE-GPPYYPEDQ  181 (292)
T ss_pred             ----CCeEEEecCCCCCCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence                1222356778889999999999999876 334566554

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=1.1e-20  Score=160.79  Aligned_cols=162  Identities=20%  Similarity=0.174  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ..|+|+|.+|||||||+|.|+|...  +-....+.+++...+....|.+..+.+|||+|+.+..  .+.+.+.+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            6799999999999999999999876  4444444444444444445888889999999998642  24566677777666


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +...+|++|||+|...+++..|..+.++++. .+.    |+++|+||+|..... ....+|..           ..++..
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~e-~~~~efys-----------lG~g~~  142 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKAE-ELAYEFYS-----------LGFGEP  142 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchhh-hhHHHHHh-----------cCCCCc
Confidence            7788899999999998999999999998884 233    999999999965330 11111111           112233


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +       ..||..+.|+.+|++.+...++
T Consensus       143 ~-------~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 V-------PISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             e-------EeehhhccCHHHHHHHHHhhcC
Confidence            3       4488889999999999999873

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.86  E-value=6.4e-21  Score=143.18  Aligned_cols=156  Identities=21%  Similarity=0.247  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+++|.+|+|||||+|+|+|.... .+. ..+.|+......+ .+.+..+.++|+||.++......+  +.+..... 
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n-~pG~Tv~~~~g~~-~~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l-   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK-VGN-WPGTTVEKKEGIF-KLGDQQVELVDLPGIYSLSSKSEE--ERVARDYL-   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE-EEE-STTSSSEEEEEEE-EETTEEEEEEE----SSSSSSSHH--HHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce-ecC-CCCCCeeeeeEEE-EecCceEEEEECCCcccCCCCCcH--HHHHHHHH-
Confidence            47999999999999999999999843 322 3455555544433 367899999999999876543322  22222221 


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ....+|++++|+|++ .+. .+......+.+. +.    |+++++||+|...+.+..+.          ...+-+..+.+
T Consensus        75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p  137 (156)
T PF02421_consen   75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGVP  137 (156)
T ss_dssp             HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred             hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence            136789999999998 432 223444445543 33    99999999997765322221          23333444655


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLV  204 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i  204 (277)
                      ++.      .++..+.++++|++.|
T Consensus       138 vi~------~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  138 VIP------VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEE------EBTTTTBTHHHHHHHH
T ss_pred             EEE------EEeCCCcCHHHHHhhC
Confidence            554      4666778999998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK15494 era GTPase Era; Provisional

Probab=99.85  E-value=5.1e-20  Score=157.26  Aligned_cols=176  Identities=20%  Similarity=0.233  Sum_probs=118.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+++|.+|||||||+|+|+|..+.  ..++...|+..........++.++.+|||||+.....   .+...+.+..
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~  125 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCA  125 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHH
Confidence            3459999999999999999999988752  2333344444333334446788899999999875322   2334455555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++.++|++++|+|....+...+..++..+... +    .|.++|+||+|....   .+.+         +.+.+....
T Consensus       126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~  188 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLND---------IKAFLTENH  188 (339)
T ss_pred             HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHH---------HHHHHHhcC
Confidence            5556789999999998866777666666666543 2    267889999996532   2222         222322222


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                      ..    ....+.||..+.|+++|++.|...++. +..+|++++
T Consensus       189 ~~----~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~  226 (339)
T PRK15494        189 PD----SLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDD  226 (339)
T ss_pred             CC----cEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence            11    112256888899999999999998876 555677666

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.85  E-value=5.6e-20  Score=149.78  Aligned_cols=133  Identities=28%  Similarity=0.330  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC---chHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKE   92 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~   92 (277)
                      .....+|+|+|.+|+|||||+|+|+|...+..+. ..+.|........ .+.+..+.||||||+.+....   ...+...
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~-~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSG-TVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEE-EECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            3456899999999999999999999988655442 2234544444433 367888999999999976421   1222223


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      +..++.  ...+|+++||..++ .+++..+...++.+.+.||...+.++++|+||+|...+
T Consensus       106 I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            333332  23679999998776 57888889999999999999999999999999998865

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.8e-18  Score=132.67  Aligned_cols=173  Identities=18%  Similarity=0.250  Sum_probs=115.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      |.+...-|+++|.+|||||||||+|+|......-...+|-|.....+..   ++ .+.+||.||++-...+. ...+.+.
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~-~~~lVDlPGYGyAkv~k-~~~e~w~   94 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DD-ELRLVDLPGYGYAKVPK-EVKEKWK   94 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cC-cEEEEeCCCcccccCCH-HHHHHHH
Confidence            3345578999999999999999999997632222233455555544432   22 27899999999877665 3344444


Q ss_pred             HHHhhcC---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGMAK---DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~---~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      +.+..+.   ....++++++|+.......|..+++++... +.    |++|++||+|++..  ......+..     ..+
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~  162 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAE  162 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence            4443322   347889999999988888899999999985 43    89999999999976  444433333     332


Q ss_pred             HHhh-cCCe--EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQL-CDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~-~~~~--~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+.. ....  +..|      |+....++++|...|...+..
T Consensus       163 ~l~~~~~~~~~~~~~------ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         163 ELKKPPPDDQWVVLF------SSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HhcCCCCccceEEEE------ecccccCHHHHHHHHHHHhhc
Confidence            2222 1222  2222      334456799999998877643

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=3e-18  Score=148.24  Aligned_cols=176  Identities=18%  Similarity=0.154  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      -|+|||.+|||||||+|+|++...   .++..+.|+.........+.+ ..++|+||||+.........+...+...   
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH---
Confidence            699999999999999999998764   334444555444444433443 5699999999986543333344455444   


Q ss_pred             cCCCccEEEEEEeCCCCC---C--HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779          100 AKDGIHAFLVVFSVTNRF---S--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~---~--~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                       ...++++++|+|++ .+   .  .....+++.+......-..+|++||+||+|....  ..+.+.+.        .+..
T Consensus       235 -i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~  302 (390)
T PRK12298        235 -LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVE  302 (390)
T ss_pred             -HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHH
Confidence             34669999999987 22   1  1223444444443211123499999999997654  33333332        2222


Q ss_pred             hcCC--eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHH
Q 023779          175 LCDN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK  221 (277)
Q Consensus       175 ~~~~--~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~  221 (277)
                      ..+.  .+      ...|+....++.+|++.|...++. ...+|++++.
T Consensus       303 ~~~~~~~V------i~ISA~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~  344 (390)
T PRK12298        303 ALGWEGPV------YLISAASGLGVKELCWDLMTFIEE-NPREEAEEAE  344 (390)
T ss_pred             HhCCCCCE------EEEECCCCcCHHHHHHHHHHHhhh-CcccCCcccc
Confidence            2221  22      245788889999999999999876 3444665554

>cd01895 EngA2 EngA2 subfamily

Probab=99.81  E-value=2.6e-18  Score=133.21  Aligned_cols=172  Identities=22%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .++|+++|++|+|||||+|+|++........ ..+.+...... .....+..+.+|||||+.+.......+.........
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDV-PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceee-EEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            3789999999999999999999876422221 11222222222 223567778999999987653222221111111112


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      ..+.++|++++|+|+..+.+......+..+... +    .|+++++||+|.............+.     +...+.....
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~  149 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY  149 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence            234678999999999866665555444443321 2    38999999999765411122222222     2222211111


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                           ......|++.+.++.++++.+.++
T Consensus       150 -----~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         150 -----APIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             -----CceEEEeccCCCCHHHHHHHHHHh
Confidence                 122356778888999998887654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04171 SelB SelB subfamily

Probab=99.81  E-value=3.5e-18  Score=131.50  Aligned_cols=157  Identities=20%  Similarity=0.236  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .|+++|++|||||||+|+|++....... ....+.|......... +. +..+.+|||||..           .+...+.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~-----------~~~~~~~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD-LPSGKRLGFIDVPGHE-----------KFIKNML   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE-ecCCcEEEEEECCChH-----------HHHHHHH
Confidence            5899999999999999999975321110 1112334444333333 33 6789999999943           2333333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc--
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC--  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~--  176 (277)
                      .++.++|++++|+|++..........+..+... +.   +|+++|+||+|....  ..+......     +.+.+...  
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~  138 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL  138 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence            446788999999999844434444444444332 32   389999999997654  223222222     34444332  


Q ss_pred             -CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                       +..+      .+.|++.+.+++++++.+..
T Consensus       139 ~~~~~------~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         139 ADAPI------FPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCcE------EEEeCCCCcCHHHHHHHHhh
Confidence             1222      25677888999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04163 Era Era subfamily

Probab=99.80  E-value=1.8e-18  Score=133.16  Aligned_cols=164  Identities=22%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|+|||||+|+|+|.......  ....++...........+..+.+|||||+.+.....   ...+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence            478999999999999999999987653222  122232222222222345678999999988643221   122323333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC-
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-  177 (277)
                      .....+|++++|+|++..++.....+...+... +    .|+++|+||+|..... ..+.+.+..        +....+ 
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~  143 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF  143 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence            345778999999999955555565655555542 2    2899999999976321 333333322        212211 


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..+      ...|++.+.+++++++.|...
T Consensus       144 ~~~------~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         144 AEI------FPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             Cce------EEEEeccCCChHHHHHHHHhh
Confidence            122      245666778899999988754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=8.1e-18  Score=149.43  Aligned_cols=176  Identities=23%  Similarity=0.267  Sum_probs=112.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|++|+|||||+|+|++......+. ..+.|....... ..+.+..+.+|||||+.........+........
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTP-FERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEE-EEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            45899999999999999999999876432221 123333333232 3367788999999998754432222211111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..+...+|++++|+|+..+++..+..++..+... +    .|++||+||||....  .....+...     +...+....
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence            2234677999999999988888887776666542 3    389999999998744  333333222     332222111


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                           +.+....||+.+.++.++++.+........
T Consensus       318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        318 -----YAPIVFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             -----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence                 122335688889999999999988876543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=138.02  Aligned_cols=186  Identities=18%  Similarity=0.206  Sum_probs=119.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+.+|+++|.||+|||||||+|++.+..+  ....+.++.........+++..++||||||+++....+.+..+.+..  
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~--v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d--  113 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKE--VSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD--  113 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCce--eeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH--
Confidence            45788999999999999999999654422  22233334333333445677889999999999876655444444444  


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc----------ccccHHHHhcccCCc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPK  167 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~----------~~~~l~~~l~~~~~~  167 (277)
                        ..+..|++|+++++.++.-..+..++.-+.-....   +++++++|++|+..+          +...+.++++.+ -.
T Consensus       114 --~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k-~~  187 (296)
T COG3596         114 --YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK-AE  187 (296)
T ss_pred             --HhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH-HH
Confidence              44566999999999966656666665655544332   489999999998865          233445555431 11


Q ss_pred             hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                      .+.+++..       ..+....+.....++..|...+...++..........+
T Consensus       188 ~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~  233 (296)
T COG3596         188 ALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARL  233 (296)
T ss_pred             HHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhh
Confidence            12222222       22222234566789999999999998865444433333

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.8e-18  Score=147.34  Aligned_cols=191  Identities=22%  Similarity=0.279  Sum_probs=128.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH-HHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-EIVKC   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~   96 (277)
                      ..++|+|+|.+|+|||||+|+|+|+.-  .-.++...|+.........++++.+.++||.|+-.-....+.+.. ...+.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            459999999999999999999999885  334445555555554444589999999999998643222111000 01111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      + .+...++++++|+|++.+++..+..+...+.+. |.    +++||+||||.........+.+...     +...+...
T Consensus       255 ~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l  323 (444)
T COG1160         255 L-KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL  323 (444)
T ss_pred             H-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc
Confidence            1 123456999999999999999999998888874 54    7999999999876522344444443     44444333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE  226 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~  226 (277)
                      +     |......||..+.++..|++.+...........-+..+....+.
T Consensus       324 ~-----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~  368 (444)
T COG1160         324 D-----FAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED  368 (444)
T ss_pred             c-----CCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence            3     22223458888999999999999988765554444444443333

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=8.1e-18  Score=149.25  Aligned_cols=177  Identities=24%  Similarity=0.264  Sum_probs=112.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|.+|+|||||+|+|++........ ..+.|....... ...++..+.+|||||+.......+.+........
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIP-FERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEE-EEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            45799999999999999999999876422211 123333332232 2357778999999998764432222211111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++..+|++++|+|+..+++..+..++..+... +    .|+++|+||||.... ....+.+...     +...+...+
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~  317 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD  317 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence            2245678999999999988888877766665542 3    389999999998722 1334443333     333222222


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      .     ......||+.+.++.++++.+........
T Consensus       318 ~-----~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       318 F-----APIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             C-----CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            1     12235688899999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.80  E-value=1.5e-18  Score=125.89  Aligned_cols=116  Identities=24%  Similarity=0.311  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+|+|.+|+|||||+|+|++......+.. .+.|... .+....+++..+.++||||+.+........ +.+...+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence            589999999999999999998654333322 3344444 333334688888999999998754322211 2233344433


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                       ..+|++++|++++......+..++++++  .+    +|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence             7789999999987533444566666663  22    399999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.80  E-value=6.8e-18  Score=130.56  Aligned_cols=163  Identities=22%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~   98 (277)
                      ++|+++|++|+|||||+|+|++.......  ....|........ .+.+..+.+|||||+.+...... .+...   .+.
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~   74 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHF-DYKYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT   74 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEE-ccCceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence            47999999999999999999987642211  1122333332222 24567899999999865322111 11111   111


Q ss_pred             hcCCCccEEEEEEeCCCCCC--HH-HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           99 MAKDGIHAFLVVFSVTNRFS--QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ......|++++|+|++.+.+  .. ...++..+...+.   ..|+++|+||+|....  ..+.. ..        .+...
T Consensus        75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~--------~~~~~  140 (168)
T cd01897          75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IE--------EEEEL  140 (168)
T ss_pred             HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HH--------Hhhhh
Confidence            11123589999999983322  12 2345555554432   2499999999998655  33322 11        11111


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ....+      ..+|++.+.+++++++++...+
T Consensus       141 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         141 EGEEV------LKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCce------EEEEecccCCHHHHHHHHHHHh
Confidence            11122      2568899999999999987764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=2e-18  Score=142.65  Aligned_cols=215  Identities=17%  Similarity=0.229  Sum_probs=131.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC--cccc--------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKA--FKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~--~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      +|+++|++|+|||||+++|+....  ...+              ....+.|.......+. +.+..+.+|||||+.+.  
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df--   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF--   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence            489999999999999999962110  0000              1122445555555444 78899999999997642  


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                           ..+...    ++..+|++++|+|+..+....+...+..+... +.    |+++++||+|....   ..+..+.. 
T Consensus        78 -----~~~~~~----~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a---~~~~~~~~-  139 (270)
T cd01886          78 -----TIEVER----SLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA---DFFRVVEQ-  139 (270)
T ss_pred             -----HHHHHH----HHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHHHHHH-
Confidence                 223333    34556999999999877777777777766653 32    89999999997643   33333333 


Q ss_pred             CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh---hcCCC-----CCChHHHHHHHHHHHHHHHHHH
Q 023779          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV---QNGGQ-----PYTDELKRGATELRDKKAEVDS  236 (277)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  236 (277)
                          ++..+   +...+...-  +.++.  .++..+.+.+....-   ...+.     ..+.++...++++  +.+.++.
T Consensus       140 ----l~~~l---~~~~~~~~~--Pisa~--~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~--r~~l~e~  206 (270)
T cd01886         140 ----IREKL---GANPVPLQL--PIGEE--DDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA--REELIET  206 (270)
T ss_pred             ----HHHHh---CCCceEEEe--ccccC--CCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH--HHHHHHH
Confidence                33333   333222222  22221  222233333321110   10111     2455666666666  6667788


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779          237 LKEYSKREISKLMGQMQESYEDRIKRMAEMRAG  269 (277)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
                      +.+.+++.++++.+..+-..++..+.+++.+.+
T Consensus       207 vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~  239 (270)
T cd01886         207 LAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA  239 (270)
T ss_pred             HhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence            888999999999999888887877877776654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=1.6e-17  Score=148.32  Aligned_cols=188  Identities=18%  Similarity=0.211  Sum_probs=114.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|++|||||||+|+|++....... ...+.|....... ..+++..+.+|||||+........  ..+....+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~-~~~~~~~~~l~DTaG~~~~~~~~~--~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSL-IELGGKTWRFVDTAGLRRRVKQAS--GHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEE-EEECCEEEEEEECCCccccccccc--hHHHHHHH
Confidence            4589999999999999999999987642221 1223333332222 336788899999999753221110  11222211


Q ss_pred             --hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 --~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                        ..++..+|++++|+|++.+.+..+..++..+... +    .|++||+||+|....  .....+...     +...+..
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~  353 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ  353 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence              1245788999999999977887777666555442 2    389999999998653  222111111     2111111


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE  226 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~  226 (277)
                      ...     ......||+.+.++.+|++.+.+.+.......-+..+....++
T Consensus       354 ~~~-----~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~  399 (472)
T PRK03003        354 VPW-----APRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGE  399 (472)
T ss_pred             CCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            110     1122568999999999999999988765544434444333333

>cd01898 Obg Obg subfamily

Probab=99.79  E-value=6e-18  Score=131.07  Aligned_cols=164  Identities=21%  Similarity=0.197  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .|+++|++|||||||+|+|++... ..+.. .+.|........ .+.+. .+.+|||||+.+.......+...+...   
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~-~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADY-PFTTLVPNLGVV-RVDDGRSFVVADIPGLIEGASEGKGLGHRFLRH---   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCC-CccccCCcceEE-EcCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence            489999999999999999998654 11111 122322222222 24554 899999999864322211222222222   


Q ss_pred             cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-
Q 023779          100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-  176 (277)
                       +..+|++++|+|++.+ -+... ..+.+.+..........|+++|+||+|....  ......+.        .+.... 
T Consensus        76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~--------~~~~~~~  144 (170)
T cd01898          76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLK--------ELLKELW  144 (170)
T ss_pred             -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHH--------HHHhhCC
Confidence             2356999999999833 12222 3444445443221123589999999997655  33333222        233332 


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...++      ..|++.+.++.++++.+.+.
T Consensus       145 ~~~~~------~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         145 GKPVF------PISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCEE------EEecCCCCCHHHHHHHHHhh
Confidence            22222      45777889999999888654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=8.8e-18  Score=131.39  Aligned_cols=144  Identities=18%  Similarity=0.308  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      |.....+|+++|++|+|||||+|+|++...........+.|..+..+..   + ..+.+|||||+......... ...+.
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~   88 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQ   88 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHH
Confidence            4466789999999999999999999987521111112233444433322   2 36899999998764432211 12222


Q ss_pred             HHHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      ..+..   ....+|++++|+|++.+++..+...+.++... +    .|+++++||+|....  ......+..     +++
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~-----i~~  156 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK-----IKK  156 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH-----HHH
Confidence            22221   22356899999999977888887766666542 3    389999999998754  444444444     555


Q ss_pred             HHhh
Q 023779          172 ILQL  175 (277)
Q Consensus       172 ~~~~  175 (277)
                      .+..
T Consensus       157 ~l~~  160 (179)
T TIGR03598       157 ALKK  160 (179)
T ss_pred             HHhh
Confidence            5544

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.79  E-value=2.6e-17  Score=130.54  Aligned_cols=172  Identities=15%  Similarity=0.270  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .+..++|+++|++|+|||||+|+|++...........+.|.......    .+..+.||||||+.....+.. ....+..
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~   95 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQK   95 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHH
Confidence            34568899999999999999999998652222122223333333221    146799999999875432221 1222222


Q ss_pred             HHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           96 CLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        96 ~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .+..   ....++++++|+|++.+.+..+..+..++.. .+    .|+++++||+|....  .........     +...
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~  163 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKA  163 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence            2222   2345578889999876666666555555543 23    289999999998755  333333332     3333


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +......++      +.|+..+.+++++++.|.+++.+
T Consensus       164 l~~~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        164 LKFGDDEVI------LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHhcCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence            332222232      45777888999999999887653

>cd01894 EngA1 EngA1 subfamily

Probab=99.79  E-value=4.6e-18  Score=129.79  Aligned_cols=155  Identities=19%  Similarity=0.196  Sum_probs=99.8

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCC
Q 023779           23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (277)
Q Consensus        23 ~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (277)
                      +++|.+|+|||||+|+|++........ ..+.|....... ....+..+.+|||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~-~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGE-AEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEE-EEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            589999999999999999875322211 223333333333 335778899999999986432   223334434334456


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-eEE
Q 023779          103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-RCV  181 (277)
Q Consensus       103 ~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~  181 (277)
                      .+|++++|+|+..+++..+...+.+++.. +    .|+++|+||+|....  ...   ..         .+...+. ++ 
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~---~~---------~~~~~~~~~~-  135 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDE---AA---------EFYSLGFGEP-  135 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHH---HH---------HHHhcCCCCe-
Confidence            78999999999866666666666666553 2    399999999998755  221   11         1112222 22 


Q ss_pred             EEeCCCcccccChhHHHHHHHHHHHH
Q 023779          182 LFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       182 ~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                           ...|++.+.+++++++.+.+.
T Consensus       136 -----~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         136 -----IPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             -----EEEecccCCCHHHHHHHHHhh
Confidence                 245777888999999988654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.78  E-value=1.3e-17  Score=127.27  Aligned_cols=155  Identities=23%  Similarity=0.251  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|++|+|||||+|+|++......+. ..+.+........ .+.+..+.+|||||+.+....   ...........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESI-DIGGIPVRLIDTAGIRETEDE---IEKIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEE-EeCCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence            689999999999999999999876422221 1223333322222 356778999999998865432   11111222223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      .+..+|++++|+|+..+.+..+...+..   ..+    .|+++|+||+|....  ...   .           ....+..
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~---~-----------~~~~~~~  133 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL---L-----------SLLAGKP  133 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc---c-----------cccCCCc
Confidence            4567899999999996565555444332   222    399999999997755  211   0           0112233


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ++      ..|+..+.++++|++.|...+
T Consensus       134 ~~------~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         134 II------AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             eE------EEECCCCCCHHHHHHHHHHhh
Confidence            33      356677789999999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=9.9e-18  Score=148.68  Aligned_cols=161  Identities=20%  Similarity=0.243  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|||||||+|.|++...... ....+.|....... ..+.+..+.+|||||+...   ...+...+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~-~~~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGD-AEWGGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEE-EEECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999998763111 11234444444443 3478889999999998642   233455566666666


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      +..+|++++|+|+..+++..+..+..++++. +    +|+++|+||+|....  ...           ..++. ..+.  
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~--~~~-----------~~~~~-~lg~--  134 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE--DAV-----------AAEFY-SLGF--  134 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc--ccc-----------HHHHH-hcCC--
Confidence            7788999999999977888888888888763 3    389999999997654  111           11111 1121  


Q ss_pred             EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                         ......|+..+.++.+|++.+...++.
T Consensus       135 ---~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       135 ---GEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             ---CCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence               112245778888999999998887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.77  E-value=4.8e-17  Score=138.17  Aligned_cols=167  Identities=18%  Similarity=0.148  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEEEEEeee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .|+|||.+|||||||+|+|++..+ .  ++..+ +|...... ...+ ++..+.+|||||+.+.......+...+.+.+ 
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~-~--va~ypfTT~~p~~G-~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-  234 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKP-K--IADYPFTTLHPNLG-VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-  234 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCC-c--cCCCCCceeCceEE-EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh-
Confidence            589999999999999999998653 1  22222 33333333 3334 5677999999999764433333444444443 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                         ..++++++|+|++..-+..+ ..+...+......-..+|++||+||+|....  .......       ++.+....+
T Consensus       235 ---e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~  302 (335)
T PRK12299        235 ---ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALG  302 (335)
T ss_pred             ---hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcC
Confidence               45699999999983323333 2344444443111123599999999997654  2221111       122222222


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..++      ..|+..+.++++|++.|...+..
T Consensus       303 ~~i~------~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        303 GPVF------LISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             CCEE------EEEcCCCCCHHHHHHHHHHHHHh
Confidence            2332      45888889999999999888764

>cd01864 Rab19 Rab19 subfamily

Probab=99.77  E-value=3.1e-17  Score=126.57  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .++|+++|++|+|||||++++.+..+.....  ............. .++  ..+.+|||||..           .+...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLE-IEGKRVKLQIWDTAGQE-----------RFRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHH
Confidence            4899999999999999999998765422211  1111222222222 344  368899999932           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....++.+|++++|+|++..-+... ..++..+.......  .|+++|+||+|..........+         ...+...
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFEE---------ACTLAEK  137 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence            3445678899999999984322222 34555554432223  3899999999976441111111         2333333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+...+     .+.|++.+.++.++++.+.+.
T Consensus       138 ~~~~~~-----~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         138 NGMLAV-----LETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cCCcEE-----EEEECCCCCCHHHHHHHHHHh
Confidence            332222     256888889999999988653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=2e-17  Score=147.70  Aligned_cols=164  Identities=21%  Similarity=0.192  Sum_probs=109.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|+|.+|||||||+|+|++....... ...+.|....... ..+.+..+.+|||||+...   ...+...+....
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~-~~~~~~~~~l~DT~G~~~~---~~~~~~~~~~~~  111 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYD-AEWNGRRFTVVDTGGWEPD---AKGLQASVAEQA  111 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEE-EEECCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence            3468999999999999999999987642222 2234444444443 3467888999999998632   122334455555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++..+|++|+|+|++.+.+..+..+..++... +    .|+++|+||+|....  .. +          ...+. ..+
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~--~~-~----------~~~~~-~~g  172 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERG--EA-D----------AAALW-SLG  172 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCcc--ch-h----------hHHHH-hcC
Confidence            5556788999999999977777777777777642 2    399999999996532  10 0          11111 111


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..     .....||..+.++.+|++.|...+..
T Consensus       173 ~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        173 LG-----EPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            11     11256888889999999998877644

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.6e-17  Score=125.75  Aligned_cols=164  Identities=17%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      -.+|+|+|.+|||||.|+..+.+..+.....+..++-...  .... +++.  .+.||||.|           ++++...
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~--rt~e-~~gk~iKlQIWDTAG-----------QERFrti   74 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKI--RTVE-LDGKTIKLQIWDTAG-----------QERFRTI   74 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEE--EEee-ecceEEEEEeeeccc-----------cHHHhhh
Confidence            4799999999999999999999888755544433333332  2222 3444  589999999           3567777


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+|+++|++|+|+|++..-+... ..|+..+.......+  |.++|.||+|....  ..+..-.       .+.+...
T Consensus        75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~  143 (205)
T KOG0084|consen   75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADE  143 (205)
T ss_pred             hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHh
Confidence            7888999999999999994433333 455666666655554  99999999997755  2221111       2234344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      .+-..+     .+.||+...++++.+..+...+....
T Consensus       144 ~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  144 LGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             cCCcce-----eecccCCccCHHHHHHHHHHHHHHhc
Confidence            443322     25688888899999998888776543

>cd01878 HflX HflX subfamily

Probab=99.77  E-value=1.4e-17  Score=133.10  Aligned_cols=163  Identities=25%  Similarity=0.235  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|||||||+|.|++......+.  ...|...........+...+.+|||||+.+...  ......+...+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~  115 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL  115 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH
Confidence            34799999999999999999999876432221  122322222223322334899999999865321  12222232222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                       ..+..+|++++|+|++.+.+... ..+.+++......+  .|+++|+||+|....  ....    .        .....
T Consensus       116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~  178 (204)
T cd01878         116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAG  178 (204)
T ss_pred             -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcC
Confidence             23457899999999984444433 23444555432222  499999999998655  2222    1        11111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...+      ...|++.+.++.++++.|...
T Consensus       179 ~~~~------~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         179 RPDA------VFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCce------EEEEcCCCCCHHHHHHHHHhh
Confidence            1222      245778889999999988654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.77  E-value=3e-17  Score=126.70  Aligned_cols=160  Identities=17%  Similarity=0.117  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||+|++++........  ............. ..  ...+.+|||||..           .+....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~~~   66 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVS-VRNKEVRVNFFDLSGHP-----------EYLEVR   66 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCeEEEEEEEECCccH-----------HHHHHH
Confidence            479999999999999999999877533221  1111111111121 22  3458899999953           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc---CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      ..++.++|++++|+|++.+-+... ..++..+......   ....|+++|+||+|.........++         ...+.
T Consensus        67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  137 (168)
T cd04119          67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWA  137 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHH
Confidence            445678899999999984322222 3344444444332   1235999999999976320011111         22233


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+
T Consensus       138 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         138 ESKGFKYF------ETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HHcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence            33343433      457778899999999987654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01865 Rab3 Rab3 subfamily

Probab=99.77  E-value=3.6e-17  Score=126.21  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++..+.....+  +........... .++  ..+.+|||||..           .+....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~-----------~~~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVF-RNDKRVKLQIWDTAGQE-----------RYRTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence            6899999999999999999998765222111  111111111111 233  458899999943           233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++++-+... ..++..+.......  .|+++|+||+|.........+.         ...+....
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLADQL  136 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence            455788999999999983322221 23333343332222  4899999999976441011111         22333343


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      +.|++.+.|+.+|++.+...+.
T Consensus       137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         137 GFEFF------EASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             CCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence            43333      4577888999999999887654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04122 Rab14 Rab14 subfamily

Probab=99.76  E-value=4.7e-17  Score=125.70  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|+|||||++++++..+....    ..|...... .....++  ..+.+|||||..           .+...
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~   67 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-----------RFRAV   67 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHH
Confidence            68999999999999999999977542221    222221111 1111333  357899999932           33333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+-+... ..++..+.......  .|+++|.||+|....  ..+..  .     ....+...
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~  136 (166)
T cd04122          68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY--E-----EAKQFADE  136 (166)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH--H-----HHHHHHHH
Confidence            4445788999999999984322222 23333333332222  489999999997644  11110  0     12333333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      ++|++.+.|+.+++..+...+
T Consensus       137 ~~~~~~------e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         137 NGLLFL------ECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            333333      467888899999988776554

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.76  E-value=5.3e-17  Score=125.51  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||++++++..+........  .......... ..+  ..+.+|||||..           .+...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--~~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~   68 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--GIDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTI   68 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--cceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHH
Confidence            4799999999999999999999876532222111  1122212222 333  357899999933           22233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+.++|++++|+|++.+-+... ..++..+......+  .|+++|+||+|.........++         ...+...
T Consensus        69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T cd01867          69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADE  137 (167)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence            3345678899999999984322222 23334444432222  4999999999976431011111         2333344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      +.|+..+.++.+++..+.+.+.
T Consensus       138 ~~~~~~------~~Sa~~~~~v~~~~~~i~~~~~  165 (167)
T cd01867         138 YGIKFL------ETSAKANINVEEAFFTLAKDIK  165 (167)
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            343333      5677788999999999887653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.76  E-value=2.1e-17  Score=131.71  Aligned_cols=166  Identities=13%  Similarity=0.084  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeee--------------------------------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLK--------------------------------   66 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------   66 (277)
                      ++|+++|++|+|||||+.+|++... ...+....+.+....+......                                
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3699999999999999999987632 2222223333444333322110                                


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      ....+.||||||..           .+...+......+|++++|+|+..+ ........+..+.. .+.   .|++||+|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence            12678999999932           2333444445677999999999842 33344445554433 232   37999999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      |+|....  ..+...++.     +++++......   .......|++.+.++++|++.|...++.
T Consensus       146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             chhccCH--HHHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            9998754  334333333     44444321100   0112355888889999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04121 Rab40 Rab40 subfamily

Probab=99.76  E-value=7.5e-17  Score=126.76  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=103.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|..|||||||+.++.+..+ ... .....+.......+ ..++  ..+.+|||||..           .+...
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~-~~~t~~~~~~~~~i-~~~~~~~~l~iwDt~G~~-----------~~~~l   71 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGST-ESP-YGYNMGIDYKTTTI-LLDGRRVKLQLWDTSGQG-----------RFCTI   71 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC-CCC-CCCcceeEEEEEEE-EECCEEEEEEEEeCCCcH-----------HHHHH
Confidence            48999999999999999999986543 111 11112222211212 2344  457899999943           33344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+.+... ..++..+.... +.  .|++||.||.|+........++         .+.+...
T Consensus        72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~--~piilVGNK~DL~~~~~v~~~~---------~~~~a~~  139 (189)
T cd04121          72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PG--VPKILVGNRLHLAFKRQVATEQ---------AQAYAER  139 (189)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccchhccCCCHHH---------HHHHHHH
Confidence            4456789999999999985444444 34555555443 23  4999999999975430011111         3344444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~  213 (277)
                      .+..++      ++||+.+.+++++++.+.+.+....+
T Consensus       140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         140 NGMTFF------EVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             cCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            454444      56888899999999999887665444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.76  E-value=4.6e-17  Score=144.02  Aligned_cols=158  Identities=22%  Similarity=0.280  Sum_probs=99.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|++|+|||||+|+|++........ ..+.|....... ..+++..+.+|||||+.++.   ..+...-....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~-i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEH-INLDGIPLRLIDTAGIRETD---DEVEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEE-EEECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence            45899999999999999999999876421111 123333332232 33678889999999987532   22111111112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ...+..+|++++|+|++.+.+..+...+.   . .. +  .|+++|+||+|....  ....               ...+
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~-~~-~--~piiiV~NK~DL~~~--~~~~---------------~~~~  344 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILE---E-LK-D--KPVIVVLNKADLTGE--IDLE---------------EENG  344 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHH---h-cC-C--CCcEEEEEhhhcccc--chhh---------------hccC
Confidence            23456789999999998665555443332   2 11 2  399999999997644  1111               0011


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+      ...|++.+.+++.|++.|...+..
T Consensus       345 ~~~------i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 KPV------IRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             Cce------EEEEeeCCCCHHHHHHHHHHHHhh
Confidence            122      245888889999999999998764

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=1.6e-17  Score=130.85  Aligned_cols=165  Identities=21%  Similarity=0.182  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   86 (277)
                      +|+++|.+|+|||||+|+|++.........              ..+.+........ .+.+..+.+|||||..+     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~-----   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHED-----   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHH-----
Confidence            489999999999999999997765322111              0122222222222 24567799999999653     


Q ss_pred             hHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (277)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~  166 (277)
                            +......++..+|++++|+|+...........+..+.. .+    .|+++|+||+|....  ..+......   
T Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~---  138 (189)
T cd00881          75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE---  138 (189)
T ss_pred             ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence                  22222233456799999999986665555555555543 22    399999999998764  344443333   


Q ss_pred             chHHHHHhhcCCe--------EEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          167 KPLKEILQLCDNR--------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       167 ~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                        +.+.+...+..        .....+..+.|++.+.++.+++..+...++
T Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              44444332210        001122235678888999999999888764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04142 RRP22 RRP22 subfamily

Probab=99.76  E-value=1.4e-16  Score=126.42  Aligned_cols=174  Identities=16%  Similarity=0.121  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++.+++..+...  .....+...... ...+++  ..+.+|||||.......   ...+.....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRP-AVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCcccccccee-EEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence            3799999999999999999998765222  111111111111 122455  35779999998643211   122222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+..+|++++|+|++.+.+... ..+++.+..... .....|++||+||+|....  ......       .++.+...
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~  145 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK  145 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence            334578899999999984333222 233344444321 1122499999999997543  111100       02222221


Q ss_pred             -cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCC
Q 023779          176 -CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (277)
Q Consensus       176 -~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~  214 (277)
                       .+..++      ++|++.+.++.+|++.+...+-.+++.
T Consensus       146 ~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         146 SWKCGYL------ECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             hcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence             122222      568888999999999998877665443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04112 Rab26 Rab26 subfamily

Probab=99.76  E-value=5.7e-17  Score=128.14  Aligned_cols=162  Identities=16%  Similarity=0.162  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++..... +....+........ ....++  ..+.||||||-.           .+....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNK-VVTVDGVKVKLQIWDTAGQE-----------RFRSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEE-EEEECCEEEEEEEEeCCCcH-----------HHHHhh
Confidence            479999999999999999998766422 11111111111111 112333  358899999932           233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++.+-+..+ ..++..+.......  .|+++|+||+|....  ..+..  .     ....+....
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~~~~--~-----~~~~l~~~~  136 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE--RVVKR--E-----DGERLAKEY  136 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc--cccCH--H-----HHHHHHHHc
Confidence            445678899999999984322222 34455555543333  399999999997533  11100  0     123343444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +..++      +.|++.+.++.+|+..|.+.+...
T Consensus       137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            44443      457788899999999998887653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.76  E-value=3e-17  Score=129.39  Aligned_cols=168  Identities=19%  Similarity=0.278  Sum_probs=109.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeeEEEEEe-eeCCceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~   80 (277)
                      +.++|+++|+.++|||||+++|++.......                ....+.|......... ...++.++++||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3479999999999999999999853321000                0012344444444332 3678899999999954


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~  160 (277)
                      +           +......+...+|++++|+|+..++.......+..+... +.    |++||+||+|.. .  ..+...
T Consensus        82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~  142 (188)
T PF00009_consen   82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEI  142 (188)
T ss_dssp             H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHH
T ss_pred             c-----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHH
Confidence            2           222233334567999999999878888888888877664 33    899999999987 3  455555


Q ss_pred             hcccCCchHH-HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       161 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ++.     +. .+++..+..-..+-+..+.|+..+.++..|++.+...+|
T Consensus       143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            554     44 444444321000000114578888999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04120 Rab12 Rab12 subfamily

Probab=99.76  E-value=8.6e-17  Score=127.63  Aligned_cols=159  Identities=16%  Similarity=0.190  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .|+++|..|||||||++.+....+...  ...+.+.......+ ..++  ..+.+|||+|..           .+.....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~--~~~Ti~~~~~~~~i-~~~~~~v~l~iwDtaGqe-----------~~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEA--CKSGVGVDFKIKTV-ELRGKKIRLQIWDTAGQE-----------RFNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCc--CCCcceeEEEEEEE-EECCEEEEEEEEeCCCch-----------hhHHHHH
Confidence            589999999999999999986654221  11112222222222 2444  457899999943           3334445


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-  176 (277)
                      .+++++|++++|+|++.+-+..+ ..++..+......+  .|++||.||+|....  ..+....       ...+.... 
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~  136 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT  136 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence            56789999999999995444333 34445555443333  399999999997543  2221111       12222222 


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ++||+.+.++.+++..+.+.+..
T Consensus       137 ~~~~~------etSAktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         137 GMRFC------EASAKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence            22222      56888999999999998876643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01866 Rab2 Rab2 subfamily

Probab=99.76  E-value=7.2e-17  Score=124.91  Aligned_cols=159  Identities=16%  Similarity=0.119  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||++.+++...........+  ......... .++  ..+.+|||||..           ++....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~   70 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMIT-IDGKQIKLQIWDTAGQE-----------SFRSIT   70 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence            7999999999999999999998765332221112  222112122 233  368899999932           233334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+-+... ..++..+.....+.  .|++||.||.|.........++         ...+....
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  139 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEH  139 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence            445678899999999983222222 23333333332222  3899999999976431111111         22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      +.|+..+.++.+++..+...+.
T Consensus       140 ~~~~~------e~Sa~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         140 GLIFM------ETSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            33332      4677778899999988877653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.76  E-value=8.4e-17  Score=129.70  Aligned_cols=159  Identities=14%  Similarity=0.029  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE--EEee-eCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ....+|+++|.+|||||||++.++...+....    ..|......  .... .....+.+|||||...           +
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~   75 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F   75 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----CCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence            56689999999999999999998755532211    122221111  1111 1234689999999543           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ......++.++|++|+|+|++.+.+... ..++..+.... .+  .|++||+||+|....  ....+.        + .+
T Consensus        76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~~--~v~~~~--------~-~~  141 (219)
T PLN03071         76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF  141 (219)
T ss_pred             hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence            2333345788899999999995433333 24444455443 22  499999999996533  111111        1 22


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+..|+      ++||+.+.++.+++.+|...+..
T Consensus       142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence            233333343      56888899999999999877654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=3.4e-17  Score=145.43  Aligned_cols=158  Identities=19%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+|+|.+|||||||+|+|++........ ..+.|....... ..+.+..+.+|||||+.+..   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~-~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGE-AEWLGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEE-EEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            579999999999999999999876422221 233444443333 34778899999999998621   2233444444445


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ++..+|++++|+|+..+++..+.....+++.. +    .|+++|+||+|..... ...            .++. ..+. 
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~~-~~~------------~~~~-~lg~-  136 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDEE-ADA------------YEFY-SLGL-  136 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccch-hhH------------HHHH-hcCC-
Confidence            56788999999999877888887777777764 3    3999999999954320 111            1111 1121 


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                          ......|+..+.++.+|++.|..
T Consensus       137 ----~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        137 ----GEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence                11234577788888888888876

>cd04124 RabL2 RabL2 subfamily

Probab=99.75  E-value=5.6e-17  Score=124.63  Aligned_cols=155  Identities=18%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-EeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|.+|||||||++.+++....+...    .+....... ....++  ..+.+|||||..           .+...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~   65 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL----STYALTLYKHNAKFEGKTILVDFWDTAGQE-----------RFQTM   65 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcC----CceeeEEEEEEEEECCEEEEEEEEeCCCch-----------hhhhh
Confidence            479999999999999999998765422211    121111111 111233  357899999943           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+.+..+ ..++..+.....   ..|+++|+||+|....    ....        ...+...
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~  130 (161)
T cd04124          66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPS----VTQK--------KFNFAEK  130 (161)
T ss_pred             hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchh----HHHH--------HHHHHHH
Confidence            4445778899999999984433333 344455544322   2499999999996422    1111        1222222


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.++++.+.+.+..
T Consensus       131 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         131 HNLPLY------YVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             cCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            233332      45788889999999998876543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.75  E-value=4.7e-17  Score=125.74  Aligned_cols=158  Identities=16%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .|+++|++|+|||||+|+|++..+...  ...+.|...........  .+..+.+|||||...           +.....
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence            599999999999999999997664222  22233433333333321  367899999999542           222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh----
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ----  174 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~----  174 (277)
                      ..+..+|++++|+|++..........+..+.. .+    .|+++|+||+|....   ........     +..+..    
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~---~~~~~~~~-----~~~~~~~~~~  135 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNA---NPERVKNE-----LSELGLQGED  135 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccc---cHHHHHHH-----HHHhhccccc
Confidence            34467899999999985544444555555543 23    389999999997643   11111111     111111    


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+..+    ...+.|+..+.++.+|++.|....
T Consensus       136 ~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         136 EWGGDV----QIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             cccCcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence            111111    223567778889999999987764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.75  E-value=4.9e-17  Score=125.32  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (277)
                      |+++|++|||||||++.+++..+....    .+|........ ...+..+.+|||||...           +......++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i-~~~~~~l~i~Dt~G~~~-----------~~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI-PTQDAIMELLEIGGSQN-----------LRKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE-eeCCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence            789999999999999999976542221    12221112222 24567899999999543           222233456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEE
Q 023779          102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (277)
Q Consensus       102 ~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  181 (277)
                      +++|++++|+|.+.+.+...  ...++..........|+++|+||.|....  ..+.++... .  .+..+....+..++
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~  138 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ  138 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence            78899999999984332222  12233333221223599999999997654  334332211 0  02333333344455


Q ss_pred             EEeCCCcccccChhHHHHHHHHHHH
Q 023779          182 LFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       182 ~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .......+|+..+.++.++++.+.+
T Consensus       139 ~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         139 GTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             EeeecCCCChhHHHHHHHHHHHHhc
Confidence            4556677888889999999887643

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=5.3e-17  Score=132.54  Aligned_cols=129  Identities=21%  Similarity=0.238  Sum_probs=90.6

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKE   92 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~   92 (277)
                      +-....++|+|.|.+|||||||++.|++..+   ...+.+.|+.....++...++..+.+|||||+.|-.... ..+..+
T Consensus       163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q  239 (346)
T COG1084         163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ  239 (346)
T ss_pred             CCCCCCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence            3334558999999999999999999998775   233344455443443444778899999999999854322 122222


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      -..++.   .-.++++|++|.+  .+++.++ ...++.++..|..    |+++|+||.|....
T Consensus       240 Ai~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~  295 (346)
T COG1084         240 AILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence            222222   2348999999998  5666665 5777888888874    89999999997755

>cd04154 Arl2 Arl2 subfamily

Probab=99.75  E-value=3.5e-17  Score=127.27  Aligned_cols=158  Identities=17%  Similarity=0.173  Sum_probs=93.8

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .+.....+|+++|++|||||||+++|++.....     ..+|......... +++..+.+|||||...           +
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~   71 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------L   71 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEE-ECCEEEEEEECCCCHH-----------H
Confidence            344556899999999999999999999874321     1122222222222 4567899999999432           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      ......++.++|++++|+|++.+.+..+  ...++...+..  ....|++||+||+|....  ...++         +..
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~  138 (173)
T cd04154          72 RPYWRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGA--LSEEE---------IRE  138 (173)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHH---------HHH
Confidence            2233345678899999999984322222  11222222211  122499999999997654  22222         122


Q ss_pred             HHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          172 ILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       172 ~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      ++...   ...+.    ..+.|++.+.+++++++++.
T Consensus       139 ~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         139 ALELDKISSHHWR----IQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             HhCccccCCCceE----EEeccCCCCcCHHHHHHHHh
Confidence            22111   11111    22568888999999998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.75  E-value=1.7e-16  Score=148.20  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=109.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..++|+++|++|||||||+|+|++......  .....|+.........+++..+.+|||||+........  ..+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v--~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV--NDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT--GAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccc--CCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence            348999999999999999999998764211  12222332222223346788899999999864322211  11222221


Q ss_pred             --hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 --~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                        ..++..+|++++|+|++.+.+..+..++..+... +    .|++||+||||....  .....+...     +...+..
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~  592 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR  592 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence              2345788999999999978888777766655442 2    399999999998654  222211111     1111111


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~  213 (277)
                      ..     +......||+.+.++.+|++.+.........
T Consensus       593 ~~-----~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        593 VT-----WARRVNLSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            11     1112345889999999999999998876443

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.75  E-value=5.6e-17  Score=125.75  Aligned_cols=161  Identities=16%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +|+++|++|||||||++.+++..+....    .+|...... ......+  ..+.+|||||..           ++....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNY----KATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence            6899999999999999999987642221    222222211 1111233  458899999943           233344


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+++++|++++|+|++.+-+... ..++..+.....+ ...|+++|.||.|....  ..+......     ...+....
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~--~~~~~~~~~-----~~~~~~~~  138 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP--AQYALMEQD-----AIKLAAEM  138 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc--ccccccHHH-----HHHHHHHc
Confidence            455788999999999983222221 2333333322211 12378999999996543  111100000     22333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ..|++.+.++.++++.+..+..+
T Consensus       139 ~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         139 QAEYW------SVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             CCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            43433      45888889999999999888754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04113 Rab4 Rab4 subfamily

Probab=99.75  E-value=5.4e-17  Score=124.64  Aligned_cols=156  Identities=21%  Similarity=0.167  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||++.|++........  ...+......... .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~-----------~~~~~~   66 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIR-VGGKRVKLQIWDTAGQE-----------RFRSVT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEECcchH-----------HHHHhH
Confidence            379999999999999999999776522221  1111111111111 233  457899999943           222233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|++.+.+... ..++..+......+  .|+++|+||+|..........+         ...+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~  135 (161)
T cd04113          67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQREVTFLE---------ASRFAQEN  135 (161)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhccCCHHH---------HHHHHHHc
Confidence            344578899999999984333322 23444444443333  3999999999976431011111         22333344


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      +..++      ..|++.+.++.++++.+.+
T Consensus       136 ~~~~~------~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         136 GLLFL------ETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             CCEEE------EEECCCCCCHHHHHHHHHH
Confidence            43333      4577778899999988765

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.75  E-value=2.4e-17  Score=127.35  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|++|+|||||+|.|++......+..  ...+|........ .+++..+.+|||||...           +.....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI-EVGNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE-EECCEEEEEEECCCChh-----------hHHHHH
Confidence            489999999999999999986543211111  1123333333322 35678899999999653           222333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+.++|++++|+|++..-+.  .....++......  ....|+++++||+|....  ....+....     +.......
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~  139 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI  139 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence            446788999999998732111  1122233332221  112499999999997544  322222111     11111111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      +....   .....|++.+.++++++++|.
T Consensus       140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         140 GRRDC---LVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence            11110   122568888999999998874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.75  E-value=1e-16  Score=136.07  Aligned_cols=166  Identities=19%  Similarity=0.193  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      -.|+|||.+|||||||+|+|++.... .... ..+|......... +.+ ..+.|+||||+.........+...+.+.+ 
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y-~fTT~~p~ig~v~-~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADY-PFTTLVPNLGVVR-VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-CCCccCCEEEEEE-eCCceEEEEEeCCCcccCCcccccHHHHHHHHH-
Confidence            36899999999999999999976531 1111 1223333333233 444 78999999999754433333445555544 


Q ss_pred             hcCCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           99 MAKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                         ..++++++|+|++..   -...+ ..+.+.+......-..+|++||+||+|....  ..+....+        .+.+
T Consensus       234 ---erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~--------~l~~  300 (329)
T TIGR02729       234 ---ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLK--------ELKK  300 (329)
T ss_pred             ---HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHH--------HHHH
Confidence               345999999999832   11122 2333344433211123599999999998654  33333222        2223


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+..++      ..|+..+.++++|++.|...+
T Consensus       301 ~~~~~vi------~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       301 ALGKPVF------PISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HcCCcEE------EEEccCCcCHHHHHHHHHHHh
Confidence            3332332      457788899999999988765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04140 ARHI_like ARHI subfamily

Probab=99.75  E-value=8.1e-17  Score=124.26  Aligned_cols=160  Identities=19%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|++|||||||++++++..+.....+..+.+. ...... ......+.+|||||....           ......
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQF-----------PAMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcc-----------hHHHHH
Confidence            6899999999999999999998765322222111111 111111 122345889999996542           112223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ++..+|++++|+|++.+-+... ..++..+....+.. ...|+++|+||+|....  ..+....       ...+....+
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~  139 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN  139 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence            4567899999999984443333 44556666654322 23499999999997643  1111110       111222222


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..+      .++||+.+.++.++++.|.++
T Consensus       140 ~~~------~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         140 CAF------METSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CcE------EEeecCCCCCHHHHHHHHHhc
Confidence            223      256888899999999988654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.75  E-value=5.2e-17  Score=139.04  Aligned_cols=162  Identities=22%  Similarity=0.163  Sum_probs=99.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|.+|+|||||+|+|++.......  ..+.|...........++..+.||||||+....  ...+.+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence            3478999999999999999999997743222  123333333333333356789999999984321  122223343333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      . .+..+|++++|+|++.+.+.... .+..++... +. ...|+++|+||+|....  ..+..            +... 
T Consensus       264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~~-  325 (351)
T TIGR03156       264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEEG-  325 (351)
T ss_pred             H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHhC-
Confidence            2 35678999999999854444332 333445543 21 12499999999997643  22211            1010 


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...      ....|++.+.|+++|++.|...
T Consensus       326 ~~~------~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YPE------AVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CCC------EEEEEccCCCCHHHHHHHHHhh
Confidence            111      2356888899999999988654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01861 Rab6 Rab6 subfamily

Probab=99.75  E-value=6.9e-17  Score=123.97  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||+|++++..+....  ....+......... .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~   66 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLI   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence            37999999999999999999987753321  12222222222222 334  358899999933           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|++.+-+..+ ..++..+....+.  ..|+++++||+|.........+.         ...+....
T Consensus        67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~  135 (161)
T cd01861          67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL  135 (161)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence            445678899999999984322222 2344444333332  24999999999975331111111         22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +..++      ..|+..+.++.++++.|.+.
T Consensus       136 ~~~~~------~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         136 NAMFI------ETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CCEEE------EEeCCCCCCHHHHHHHHHHh
Confidence            33333      35777888999999988764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=1.2e-16  Score=126.75  Aligned_cols=171  Identities=20%  Similarity=0.189  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|+|||||+|+|+|...+..+....+   .|.....+..  .....+.+|||||+.+.....+    ++...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~----~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPPD----DYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence            6799999999999999999999665443332222   1222221211  1234689999999986543222    22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc-------cHHHHhcccCCchH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL  169 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~-------~l~~~l~~~~~~~~  169 (277)
                        ..+.+.|+++++.+  .+++..+..+++++... +.    |+++|+||+|.......       ..+.++.. ....+
T Consensus        76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~  145 (197)
T cd04104          76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC  145 (197)
T ss_pred             --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence              13567799888854  37888888888888875 43    89999999998643110       12333333 11123


Q ss_pred             HHHHhhcC---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          170 KEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       170 ~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+...+   ..++..+....    .+.++..|.+.+...++.
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence            33333322   35555444321    346788888888887775

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04109 Rab28 Rab28 subfamily

Probab=99.75  E-value=7.8e-17  Score=129.69  Aligned_cols=163  Identities=20%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++..+....  ....+...........+  ...+.||||||..           ......
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence            47999999999999999999976642211  11112222122222112  3468899999932           223334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ..++.++|++++|+|++..-+... ..++..+...... ....|+++|+||+|....  ..+...  .     ...+...
T Consensus        68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~--~-----~~~~~~~  138 (215)
T cd04109          68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD--K-----HARFAQA  138 (215)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH--H-----HHHHHHH
Confidence            445678999999999984333222 3455556555432 112378999999997533  111100  1     2334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..||+.+.++.++++.+...+..
T Consensus       139 ~~~~~~------~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         139 NGMESC------LVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             cCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence            343333      35888899999999999887654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.75  E-value=9.1e-17  Score=124.02  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++..+...  ...+.+......... ..+  ..+.+|||||..           .+....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHHH
Confidence            6899999999999999999997664221  112222222222222 333  357899999943           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...++.+|++++|+|++++-+... ..++..+.......  .|+++|.||+|.........++         ...+....
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~  137 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL  137 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence            445678899999999983222222 23333343332122  4899999999975441111111         22333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      +.|++.+.++.+++..|.+.+.
T Consensus       138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         138 GIPFL------ETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCeEE------EEECCCCcCHHHHHHHHHHHHH
Confidence            43433      4677788899999999877653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.75  E-value=1e-16  Score=123.36  Aligned_cols=159  Identities=20%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||++++++.......  ....+......... ..+  ..+.+|||||..           .+....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence            47999999999999999999987652221  11222222222222 344  358899999932           222333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|+...-+... ..++..+.......  .|+++|+||+|.........+ .        ...+....
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~~~~~~-~--------~~~~~~~~  135 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQRQVSRE-E--------AEAFAEEH  135 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccccCCCHH-H--------HHHHHHHc
Confidence            444577899999999983323222 22333333332222  499999999997643101111 1        22344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      +.|+..+.++.++++.|.+.+.
T Consensus       136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      136 GLPFF------ETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence            54433      4566777899999999987664

Rab GTPases are implicated in vesicle trafficking.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.75  E-value=1.1e-16  Score=123.06  Aligned_cols=158  Identities=21%  Similarity=0.169  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||+|++++...........+.+  ....... .++  ..+.+|||||..           .+....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~-~~~~~~~~~i~D~~G~~-----------~~~~~~   67 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVN-LDDTTVKFEIWDTAGQE-----------RYRSLA   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHHH
Confidence            689999999999999999999877533221111111  1111111 233  457899999932           222333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+.++|++++|+|++..-+... ..++..+.......  .|++++.||.|...........         ...+....
T Consensus        68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~  136 (163)
T cd01860          68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADEN  136 (163)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHHc
Confidence            335677899999999983222222 34445555543332  3899999999966331011111         23334443


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..+      .+.|++.+.++.++++.+.+.+
T Consensus       137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         137 GLLF------FETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             CCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence            4333      3567778899999999987654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.75  E-value=3.8e-16  Score=133.66  Aligned_cols=168  Identities=22%  Similarity=0.262  Sum_probs=117.9

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      ....+.+.+|+++|+||+|||||+|+|++.+.  +.++..+.|++.........+|.++.++||.|+-++...-+.++-+
T Consensus       211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe  288 (454)
T COG0486         211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE  288 (454)
T ss_pred             hhhhhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHH
Confidence            34456789999999999999999999999886  5566666677666665566899999999999998754433443322


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                        ++ ......+|.+|||+|++...+..+...+.   ..   ...+|+++|.||.|....  ......            
T Consensus       289 --Rs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~---~~~~~~i~v~NK~DL~~~--~~~~~~------------  345 (454)
T COG0486         289 --RA-KKAIEEADLVLFVLDASQPLDKEDLALIE---LL---PKKKPIIVVLNKADLVSK--IELESE------------  345 (454)
T ss_pred             --HH-HHHHHhCCEEEEEEeCCCCCchhhHHHHH---hc---ccCCCEEEEEechhcccc--cccchh------------
Confidence              22 22346779999999999666666766555   11   112389999999998766  221111            


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                       ........     ...|++++.+++.|.+.|...+...
T Consensus       346 -~~~~~~~~-----i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         346 -KLANGDAI-----ISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             -hccCCCce-----EEEEecCccCHHHHHHHHHHHHhhc
Confidence             00011111     1447788899999999999998764

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.75  E-value=2.5e-16  Score=122.28  Aligned_cols=160  Identities=16%  Similarity=0.109  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|..|||||||++.+.+..+....    .+|...........++  ..+.+|||||...           +....
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARIDNEPALLDILDTAGQAE-----------FTAMR   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEECCEEEEEEEEeCCCchh-----------hHHHh
Confidence            68999999999999999999876652221    2222221221122344  3578999999542           33333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++++.+.... .++..+..... ....|+++|+||+|....  ..+....       ...+....
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~  137 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF  137 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence            4456788999999999855554443 34444554322 123499999999996543  2221111       22333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ++|++.+.+++++++.+.+.+..
T Consensus       138 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         138 NCPFF------ETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             CCEEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence            44433      56888889999999998766543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04110 Rab35 Rab35 subfamily

Probab=99.74  E-value=1.2e-16  Score=127.16  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||++.+++..+....  ..+........... ..+  ..+.||||||...           +...
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~~   71 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVE-INGERVKLQIWDTAGQER-----------FRTI   71 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEE-ECCEEEEEEEEeCCCchh-----------HHHH
Confidence            489999999999999999999976642211  11111122112221 233  3578999999432           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.+++++++|+|++.+-+..+ ..++..+.....   ..|++||+||+|....  ..+..  ..     ...+...
T Consensus        72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~--~~-----~~~~~~~  139 (199)
T cd04110          72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVET--ED-----AYKFAGQ  139 (199)
T ss_pred             HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCH--HH-----HHHHHHH
Confidence            3445678899999999984333222 234444444322   2489999999997644  22110  00     2233333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      +.|+..+.++.++++.|...+..
T Consensus       140 ~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         140 MGISLF------ETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             cCCEEE------EEECCCCcCHHHHHHHHHHHHHH
Confidence            343333      45777889999999999887654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04127 Rab27A Rab27a subfamily

Probab=99.74  E-value=1.8e-16  Score=123.97  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-----------eCCceEEEEeCCCCCCCCCCch
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDLSAGSE   87 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~liDtpG~~~~~~~~~   87 (277)
                      .++|+++|++|||||||++.+++........+  +............           .....+.+|||||.        
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------   73 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------   73 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--------
Confidence            48999999999999999999987664222111  1111111111111           11246889999992        


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779           88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (277)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~  166 (277)
                         .++......++.++|++++|+|++..-+... ..++..+..... ....|+++|.||+|....  ..+..  .    
T Consensus        74 ---~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~v~~--~----  141 (180)
T cd04127          74 ---ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ--RQVSE--E----  141 (180)
T ss_pred             ---HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc--CccCH--H----
Confidence               2334444556788999999999984322222 233333333211 112389999999997643  11110  0    


Q ss_pred             chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                       ....+....+..++      +.|++.+.+++++++.+.+.+.
T Consensus       142 -~~~~~~~~~~~~~~------e~Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         142 -QAKALADKYGIPYF------ETSAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             -HHHHHHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence             13334444443333      5688888999999999877553

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.5e-16  Score=139.31  Aligned_cols=166  Identities=19%  Similarity=0.236  Sum_probs=112.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|+|||||+|+|+|.+.....  -.+.|+........ +.++.+.++|.||.++......+  +.+.+-+.
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSED--EKVARDFL   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence            467999999999999999999998853222  23555555544444 78888999999999876643222  22322222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                       ....+|+++-|+|++ .+...-.-.++.+ + +|.    |+++++|++|..++.|-.++          .+++-+..|.
T Consensus        78 -l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E-~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv  139 (653)
T COG0370          78 -LEGKPDLIVNVVDAT-NLERNLYLTLQLL-E-LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLGV  139 (653)
T ss_pred             -hcCCCCEEEEEcccc-hHHHHHHHHHHHH-H-cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence             146789999999998 4433333333322 2 233    89999999998766333332          3444455677


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~  213 (277)
                      +++.      .+|.++.|+++++..+....+.+..
T Consensus       140 PVv~------tvA~~g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         140 PVVP------TVAKRGEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             CEEE------EEeecCCCHHHHHHHHHHhcccccc
Confidence            7664      5777889999999999988766543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.74  E-value=1.2e-16  Score=149.24  Aligned_cols=164  Identities=21%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|+|.+|||||||+|+|++....... ...+.|...... ...+.+..+.+|||||+....   ..+...+....
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~-~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~  348 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSY-DAEWAGTDFKLVDTGGWEADV---EGIDSAIASQA  348 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEE-EEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence            4578999999999999999999987542111 123444444333 334678899999999987422   22344555555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++..+|++|+|+|++.+++..+..+..+++.. +    .|+++|+||+|....  ...           ...+.. .+
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~-lg  409 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWK-LG  409 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHH-cC
Confidence            5566788999999999877888777777777642 2    399999999996533  110           111111 12


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..     ...+.|+..+.|+.+|++.|...++.
T Consensus       410 ~~-----~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        410 LG-----EPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CC-----CeEEEECCCCCCchHHHHHHHHhccc
Confidence            11     11245888999999999998877643

>cd01868 Rab11_like Rab11-like

Probab=99.74  E-value=2.3e-16  Score=121.65  Aligned_cols=158  Identities=18%  Similarity=0.151  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++......  .....+......... ..+  ..+.+|||||..           .+....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHHH
Confidence            6899999999999999999998764222  112222222222222 334  357899999932           233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..++++++|+|++...+..+ ..++..+......+  .|+++|+||+|.........++         ...+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~  138 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN  138 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence            445678899999999983332222 23344444433222  4999999999975431011111         22333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      +.|++.+.++..+++.+...+
T Consensus       139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         139 GLSFI------ETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCEEE------EEECCCCCCHHHHHHHHHHHh
Confidence            33333      467788899999999887653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.74  E-value=1.2e-16  Score=123.05  Aligned_cols=159  Identities=21%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||++++++.......    ..|...........++  ..+.+|||||...           +...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEE-----------FSAM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEECCEEEEEEEEECCCCcc-----------hhHH
Confidence            379999999999999999999976542211    1222211121122444  3578999999653           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++..-+... ..++..+..... ....|++|++||+|....  ..+...  .     ...+...
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~  136 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARK  136 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHH
Confidence            2334567799999999983322222 223333333221 122499999999997544  211110  1     2233333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      +.|+..+.++.++++.+.+.+
T Consensus       137 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         137 LKIPYI------ETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cCCcEE------EeeCCCCCCHHHHHHHHHHhh
Confidence            333332      567888899999999887654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.74  E-value=6.1e-16  Score=124.91  Aligned_cols=172  Identities=12%  Similarity=0.057  Sum_probs=104.0

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      .+.....+|+++|++|||||||++.+++..+....    .+|....+......++  ..+.||||+|-.           
T Consensus         8 ~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e-----------   72 (232)
T cd04174           8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTAGLETEEQRVELSLWDTSGSP-----------   72 (232)
T ss_pred             cCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCc----CCceeeeeEEEEEECCEEEEEEEEeCCCch-----------
Confidence            34455689999999999999999999876542221    2222221211122333  358899999932           


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-C
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-C  165 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~  165 (277)
                      .+......++.++|++++|+|++.+-+...  ..|+..+..... .  .|++||+||+|+.... ..+......   . .
T Consensus        73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs  148 (232)
T cd04174          73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPIS  148 (232)
T ss_pred             hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCC
Confidence            233344456789999999999985444432  345555665432 2  3899999999964321 111100000   0 0


Q ss_pred             CchHHHHHhhcCC-eEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779          166 PKPLKEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (277)
Q Consensus       166 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~  210 (277)
                      ....+.+....+. .|+      ++||+.+. ++.+++..+...+..
T Consensus       149 ~~e~~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         149 YEQGCALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             HHHHHHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHHHH
Confidence            0124445555554 233      57888886 799999998776543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.74  E-value=3.9e-17  Score=135.76  Aligned_cols=215  Identities=17%  Similarity=0.198  Sum_probs=127.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc--cccCCC--------------CCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAF--KASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~--~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      +|+|+|++|+|||||+|+|++....  ..+...              .+.+........ .+.+..+.+|||||..+   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~~---   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-EWKGHKINLIDTPGYAD---   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-EECCEEEEEEECcCHHH---
Confidence            4899999999999999999743211  111110              122222222223 36788899999999653   


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                          .......+    +..+|++++|+|++.+........+..+... +    .|+++++||+|....   .+...+.. 
T Consensus        77 ----f~~~~~~~----l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~---~~~~~~~~-  139 (268)
T cd04170          77 ----FVGETRAA----LRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA---DFDKTLAA-  139 (268)
T ss_pred             ----HHHHHHHH----HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC---CHHHHHHH-
Confidence                11223333    3456999999999866666555665555432 3    289999999997644   34444433 


Q ss_pred             CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc-CC-----CCCChHHHHHHHHHHHHHHHHHHHH
Q 023779          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN-GG-----QPYTDELKRGATELRDKKAEVDSLK  238 (277)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                          ++   ...+.+++.+.-+..    .+.++..+++.+....-.. .+     ...+.++...++++  +.+.++.+.
T Consensus       140 ----l~---~~~~~~~~~~~ip~~----~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~l~e~~a  206 (268)
T cd04170         140 ----LQ---EAFGRPVVPLQLPIG----EGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA  206 (268)
T ss_pred             ----HH---HHhCCCeEEEEeccc----CCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHH--HHHHHHHHh
Confidence                33   334555555443322    2234444444432221111 11     12345555555555  556677788


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779          239 EYSKREISKLMGQMQESYEDRIKRMAEMRAG  269 (277)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
                      +.+++.++++.+..+...++..+.+++.+.+
T Consensus       207 ~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~  237 (268)
T cd04170         207 ETDDELMEKYLEGGELTEEELHAGLRRALRA  237 (268)
T ss_pred             hCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            8899999999988777777777777766654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.74  E-value=1.4e-16  Score=126.88  Aligned_cols=160  Identities=14%  Similarity=0.059  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+|+++|++|||||||++.+++..+....    .+|..  ....... .+   ...+.+|||||..           .+.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~----~~t~~~d~~~~~v~-~~~~~~~~l~l~Dt~G~~-----------~~~   64 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY----KATIGVDFALKVIE-WDPNTVVRLQLWDIAGQE-----------RFG   64 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeEEEEEEEEE-ECCCCEEEEEEEECCCch-----------hhh
Confidence            47999999999999999999976542221    22222  1112222 23   3457899999953           233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .....++.++|++++|+|++.+-+... ..++..+.....  .....|++||+||.|.........++         ...
T Consensus        65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~  135 (201)
T cd04107          65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQ  135 (201)
T ss_pred             hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHH
Confidence            333445788999999999984333222 223333333211  11234999999999975320011111         333


Q ss_pred             HHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +....+ ..++      ++|++.+.++.++++.+.+.+..
T Consensus       136 ~~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         136 FCKENGFIGWF------ETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            444444 2332      56888889999999999887654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.74  E-value=2.2e-16  Score=127.04  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|||||||++.+++........  .+.........+ ..++  ..+.||||||..           .+..
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v-~~~~~~~~l~l~Dt~G~~-----------~~~~   76 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTL-QVEGKTVKAQIWDTAGQE-----------RYRA   76 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEE-EECCEEEEEEEEECCCcH-----------HHHH
Confidence            45899999999999999999999876532211  111122211222 2333  368899999932           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..++++++|+|++..-+... ..++..+......+  .|+++|+||+|....  ..+....       .+.+..
T Consensus        77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~-------~~~l~~  145 (216)
T PLN03110         77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED-------GQALAE  145 (216)
T ss_pred             HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH-------HHHHHH
Confidence            44455678899999999983333222 24445555543333  399999999997543  1111111       222323


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      +.|++.+.+++++++.+...+..
T Consensus       146 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        146 KEGLSFL------ETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            3333333      45778889999999998776644

>cd04144 Ras2 Ras2 subfamily

Probab=99.74  E-value=1.1e-16  Score=126.42  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|.+|||||||++.+++..+....    .+|...........++.  .+.+|||||...           +.....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETY----DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-----------YTALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchHhhEEEEEEECCEEEEEEEEECCCchh-----------hHHHHH
Confidence            4899999999999999999866542211    11211111111223444  478999999432           222333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++.++|++++|+|++...+... ..++..+...... ....|++||+||+|....  ..+....       ...+....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEE-------GAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHh
Confidence            45678899999999984333222 3444445443321 123499999999997543  1111100       22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      +.||+.+.++.+++..+.+.+..
T Consensus       137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         137 GCEFI------EASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence            44333      56888889999999999887654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=99.74  E-value=7.3e-17  Score=125.02  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|.+|||||||++++++... ..    ..+|........ .+.+..+.+|||||...           +......+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~-~~~~~~i~l~Dt~G~~~-----------~~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETV-EYKNLKFTIWDVGGKHK-----------LRPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEE-EECCEEEEEEECCCChh-----------cchHHHHH
Confidence            589999999999999999997643 11    122333323222 35677899999999643           22233334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh-cC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CD  177 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~  177 (277)
                      +.++|++++|+|++.+-+..+  ...++.......  ...|++||+||+|....  ...++....      ..+... ++
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~------~~~~~~~~~  133 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTEL------LSLHKLCCG  133 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHH------hCCccccCC
Confidence            577899999999983322222  223333332211  12489999999997543  233322211      001011 11


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..    .++|++.+.|+.+++++|.+.+..
T Consensus       134 ~~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         134 RSWYI----QGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CcEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence            12222    256888999999999999877655

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.74  E-value=7.3e-16  Score=135.70  Aligned_cols=123  Identities=17%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      +...+|+++|++|+|||||+|+|++........ ..+.|...... ...+++..+.+|||||+.+...   .+...-...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~-~i~~~g~~v~l~DTaG~~~~~~---~ie~~gi~~  275 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEG-DFELNGILIKLLDTAGIREHAD---FVERLGIEK  275 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEE-EEEECCEEEEEeeCCCcccchh---HHHHHHHHH
Confidence            355899999999999999999999875311211 12333333333 3346788899999999875321   111111111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ...++..+|++++|+|++.+.+..+. ++..+..   .+  .|+++|+||+|..
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~  323 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK  323 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence            22345788999999999866655443 3333321   12  3899999999974

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04149 Arf6 Arf6 subfamily

Probab=99.73  E-value=7.6e-17  Score=124.74  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|||||||++.+...... ..    .+|........ ......+.+|||||..           .+.....
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~----~~t~g~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~~~   71 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETV-TYKNVKFNVWDVGGQD-----------KIRPLWR   71 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-cc----cCCcccceEEE-EECCEEEEEEECCCCH-----------HHHHHHH
Confidence            489999999999999999999865432 11    11222222222 2456779999999953           2333334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh--
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ--  174 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~--  174 (277)
                      .++.++|++++|+|++...+..+  ...++.+.....  ...|++||+||+|....  ...++.         ...+.  
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~~  138 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEI---------QEKLGLT  138 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHH---------HHHcCCC
Confidence            46778999999999984322222  223333332211  12499999999997543  222221         11111  


Q ss_pred             hc-CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       175 ~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .. ...+..    .++||+.+.|+.+++++|.+
T Consensus       139 ~~~~~~~~~----~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         139 RIRDRNWYV----QPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             ccCCCcEEE----EEeeCCCCCChHHHHHHHhc
Confidence            00 111222    25688899999999998753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.73  E-value=1.5e-16  Score=122.01  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||+|++++..+....    .+|...........++.  .+.+|||||...           +....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEECCEEEEEEEEECCCCcc-----------hHHHH
Confidence            58999999999999999999976642221    11211111111223443  477899999542           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|++++.+-+..+ ..++..+..... ....|++||+||+|....  ......        ...+....
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~  135 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY  135 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence            334567899999999983322222 223334443321 122499999999997643  111111        22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      +.|++.+.|++++++.+.+.+
T Consensus       136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         136 GIPYI------ETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCeEE------EecCCCCCCHHHHHHHHHHHh
Confidence            43333      457888899999999886543

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.73  E-value=8.3e-16  Score=143.19  Aligned_cols=180  Identities=16%  Similarity=0.166  Sum_probs=110.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||+|+|+|.... .+.. .+.|+...... ..+++..+.+|||||.++.....  ....+.+...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~-pGvTve~k~g~-~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNW-AGVTVERKEGQ-FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCceEeeEEEE-EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            478999999999999999999997652 2222 34454443333 34677889999999998754321  1222232222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      . .....+|++++|+|++ .... ...+...+.+. +    .|+++++||+|..+.  ..+...        .+.+-+..
T Consensus        80 ~-l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L  141 (772)
T PRK09554         80 Y-ILSGDADLLINVVDAS-NLER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRID--------IDALSARL  141 (772)
T ss_pred             H-HhccCCCEEEEEecCC-cchh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence            1 1235789999999998 4332 22333344432 3    399999999997644  222221        33344445


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC--CCCCChHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKRGAT  225 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~--~~~~~~~~~~~~~  225 (277)
                      +.+++      +.|+..+.+++++.+.+........  ...|++++.+..+
T Consensus       142 G~pVv------piSA~~g~GIdeL~~~I~~~~~~~~~~~~~yp~~le~~I~  186 (772)
T PRK09554        142 GCPVI------PLVSTRGRGIEALKLAIDRHQANENVELVHYPQPLLNEAD  186 (772)
T ss_pred             CCCEE------EEEeecCCCHHHHHHHHHHhhhccCCcccCCCHHHHHHHH
Confidence            65544      3566677899999999988764221  1225555444333

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.73  E-value=1.3e-16  Score=122.79  Aligned_cols=158  Identities=20%  Similarity=0.173  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|++|||||||+|++++........  .... ....... ..++  ..+.+|||||....           .....
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~t~~-~~~~~~~-~~~~~~~~l~i~Dt~g~~~~-----------~~~~~   66 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--PTIE-DSYRKQI-EIDGEVCLLDILDTAGQEEF-----------SAMRD   66 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccC--Cchh-hhEEEEE-EECCEEEEEEEEECCCcccc-----------hHHHH
Confidence            79999999999999999999766422211  1111 1111112 2333  45779999996542           11222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .++..+|++++|+|+..+-+... ..+...+...... ...|+++|+||+|....  ..+...  .     ...+....+
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~--~-----~~~~~~~~~  136 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE--E-----GKELARQWG  136 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH--H-----HHHHHHHcC
Confidence            23456799999999984322222 2233334333221 12499999999997643  111110  0     223334434


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..++      +.|++.+.++.++++.+.+.+.
T Consensus       137 ~~~~------~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      137 CPFL------ETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             CEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence            3333      5678888999999999877654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK04213 GTP-binding protein; Provisional

Probab=99.73  E-value=3.3e-16  Score=124.79  Aligned_cols=168  Identities=19%  Similarity=0.188  Sum_probs=97.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH-
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC-   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-   96 (277)
                      ...+|+++|++|+|||||+|+|++... ..+.. .+.|.....  .. +.  .+.+|||||++............+... 
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~-~~~t~~~~~--~~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKR-PGVTRKPNH--YD-WG--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CceeeCceE--Ee-ec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            347899999999999999999998764 22221 233332221  11 22  689999999865443332222333332 


Q ss_pred             ---HhhcCCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           97 ---LGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        97 ---~~~~~~~~~~~l~v~d~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                         +......++++++|+|......           ..+...+..+.. .  +  .|+++|+||+|....  .  .+.. 
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~--~p~iiv~NK~Dl~~~--~--~~~~-  150 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-L--G--IPPIVAVNKMDKIKN--R--DEVL-  150 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-c--C--CCeEEEEECccccCc--H--HHHH-
Confidence               2223345689999999862111           122333444432 1  2  389999999997654  2  1111 


Q ss_pred             ccCCchHHHHHhhcCC--eEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                             .++....+.  .+... ......||+.+ +++++++.|...+..
T Consensus       151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence                   122222221  11000 11236788999 999999999887755

>cd04136 Rap_like Rap-like subfamily

Probab=99.73  E-value=1.7e-16  Score=122.00  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++..+....    .+|...........++  ..+.+|||||...           +....
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ-----------FTAMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEECCEEEEEEEEECCCccc-----------cchHH
Confidence            68999999999999999999976542221    1222111111122344  3467899999543           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+++++|++++|+|++..-+..+ ..++..+..... ....|+++|+||+|....  ..+..  ..     ...+....
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~--~~-----~~~~~~~~  136 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE--RVVSR--EE-----GQALARQW  136 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceecH--HH-----HHHHHHHc
Confidence            334678899999999984332222 233444444322 123499999999997543  11111  00     22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +..++      +.|++.+.++.++++.+.+.
T Consensus       137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         137 GCPFY------ETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             CCeEE------EecCCCCCCHHHHHHHHHHh
Confidence            33333      56778889999999988764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.73  E-value=2.6e-16  Score=121.17  Aligned_cols=157  Identities=14%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCccee--eEEEEEe--eeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKT--CEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ++|+++|++|||||||++++.+. ..+...   ..+|..  .......  ......+.+|||||..           .+.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~   66 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence            47999999999999999999853 122211   122221  1111111  1233568999999932           233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      ......+..+|++++|+|++...+... ..++..+....   ...|+++|+||+|....  ..+....       .+.+.
T Consensus        67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~  134 (164)
T cd04101          67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA  134 (164)
T ss_pred             HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence            333445678899999999984322222 23334444332   22499999999997544  2111111       11222


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ...+..++      ..|+..+.++.++++.+.+.+
T Consensus       135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         135 QANQLKFF------KTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHcCCeEE------EEeCCCCCChHHHHHHHHHHh
Confidence            22232332      457788899999999887653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04125 RabA_like RabA-like subfamily

Probab=99.73  E-value=2.6e-16  Score=124.02  Aligned_cols=160  Identities=19%  Similarity=0.238  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++..+.....  .+........... .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~-----------~~~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVY-IENKIIKLQIWDTNGQE-----------RFRSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHhhH
Confidence            479999999999999999999776522111  1111222222222 333  347899999943           222233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+.++|++++|+|++.+-+... ..++..+....+..  .|+++|+||.|....  ..+....       ...+....
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~  135 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL  135 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence            445678899999999984332222 23334444433322  489999999997644  2221111       12232333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ..|++.+.++++++..+.+.+..
T Consensus       136 ~~~~~------evSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         136 NIPFF------ETSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            33333      45777788999999888776654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.73  E-value=2.7e-16  Score=121.44  Aligned_cols=159  Identities=16%  Similarity=0.132  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|.+|||||||+|++++..+... ....  ................+.+|||||....           ...+...
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRV--LPEITIPADVTPERVPTTIVDTSSRPQD-----------RANLAAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCc--ccceEeeeeecCCeEEEEEEeCCCchhh-----------hHHHhhh
Confidence            799999999999999999997665322 1111  1111111111123456889999996531           1122223


Q ss_pred             CCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc-cHHHHhcccCCchHHHHHhhcC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-TLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      +..+|++++|+|++.+.+...  ..++..+..... .  .|+++|+||+|....... .++..        +..+.....
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~~~  136 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNEFR  136 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHH--------HHHHHHHHh
Confidence            467899999999984433333  234455555432 2  499999999997654100 11121        222222221


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..    .....+|+..+.+++++++.+...+
T Consensus       137 ~~----~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         137 EI----ETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             cc----cEEEEeccccccCHHHHHHHHHHHh
Confidence            10    1122668888899999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=2.1e-16  Score=131.16  Aligned_cols=153  Identities=21%  Similarity=0.274  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEE-eeeCC--ceEEEEeCCCCCCCCCCch---
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTT-VLKDG--QVVNVIDTPGLFDLSAGSE---   87 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~-~~~~~--~~~~liDtpG~~~~~~~~~---   87 (277)
                      .+|+++|++|+|||||+|+|++.........      ....|+....... ...++  ..++|||||||++......   
T Consensus         5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~   84 (276)
T cd01850           5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK   84 (276)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence            7899999999999999999998876544321      1233333322221 12344  3589999999998654221   


Q ss_pred             HHH----HHHHHHHh--------hc--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           88 FVG----KEIVKCLG--------MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        88 ~~~----~~~~~~~~--------~~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      .+.    +++..++.        ..  ...+|+++|+++.+ .++...+...++.+..    .  .|+++|+||+|....
T Consensus        85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l~~  158 (276)
T cd01850          85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcCCH
Confidence            111    12222221        11  23589999999987 4677777777777654    2  389999999998766


Q ss_pred             ccccHHHHhcccCCchHHHHHhhcCCeEEEEeC
Q 023779          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN  185 (277)
Q Consensus       153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
                        ..+..+...     +.+.+...+.+++.|..
T Consensus       159 --~e~~~~k~~-----i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         159 --EELKEFKQR-----IMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             --HHHHHHHHH-----HHHHHHHcCCceECCCC
Confidence              556555555     77777877777776554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.73  E-value=1.9e-16  Score=121.09  Aligned_cols=156  Identities=19%  Similarity=0.249  Sum_probs=94.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCC
Q 023779           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (277)
Q Consensus        24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (277)
                      |+|++|+|||||+|+|++..... +. ..+.|......... +++..+.+|||||+.+.......  ..+....... .+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence            58999999999999999876322 21 22334444333333 56778999999998765432211  1222222222 58


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE
Q 023779          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (277)
Q Consensus       104 ~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  183 (277)
                      +|++++|+|+. .... ...++..+.. .+    .|+++|+||+|....  ..+...        ...+....+..++  
T Consensus        75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~--  135 (158)
T cd01879          75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVV--  135 (158)
T ss_pred             CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeE--
Confidence            89999999998 3322 2233333332 22    399999999998654  222211        2223233333333  


Q ss_pred             eCCCcccccChhHHHHHHHHHHHHH
Q 023779          184 DNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       184 ~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                          ..|+..+.++..+++.+..+.
T Consensus       136 ----~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         136 ----PTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ----EEEccCCCCHHHHHHHHHHHh
Confidence                457777788999998887764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.72  E-value=2.9e-16  Score=123.85  Aligned_cols=136  Identities=18%  Similarity=0.232  Sum_probs=89.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ..+|+++|+.++|||||+++|++......              .....+.|......... +++..+.++||||+.    
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~----   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA----   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH----
Confidence            37899999999999999999985311000              00123445444444333 567789999999954    


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH-Hhcc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGH  163 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~-~l~~  163 (277)
                             .+...+..+...+|++++|+|+..+....+...+..+... +..   ++++++||+|....  ....+ ..+.
T Consensus        77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~--~~~~~~~~~~  143 (195)
T cd01884          77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD--EELLELVEME  143 (195)
T ss_pred             -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc--HHHHHHHHHH
Confidence                   2333334445678999999999877777777777777663 431   47899999998644  33323 3333


Q ss_pred             cCCchHHHHHhhcC
Q 023779          164 ECPKPLKEILQLCD  177 (277)
Q Consensus       164 ~~~~~~~~~~~~~~  177 (277)
                           +..++...+
T Consensus       144 -----i~~~l~~~g  152 (195)
T cd01884         144 -----VRELLSKYG  152 (195)
T ss_pred             -----HHHHHHHhc
Confidence                 666666554

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04175 Rap1 Rap1 subgroup

Probab=99.72  E-value=2e-16  Score=121.87  Aligned_cols=158  Identities=18%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|||||||+++++.......    ..+|...........++  ..+.+|||||...           +....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence            6899999999999999999985543111    11222211111122343  3467999999542           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++..-+..+ ..++..+..... ....|++||+||+|...........         ...+....
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQW  136 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHH---------HHHHHHHh
Confidence            335677899999999873322222 233343433221 1224999999999976431111111         22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      +.|++.+.++.+++..+.+.+
T Consensus       137 ~~~~~------~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         137 GCAFL------ETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             CCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence            43333      567888899999999987655

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04123 Rab21 Rab21 subfamily

Probab=99.72  E-value=3.6e-16  Score=119.87  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||+|++++..+....  ....+......... ..+  ..+.+|||||..           .+....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~~~   66 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVN-IGGKRIDLAIWDTAGQE-----------RYHALG   66 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEE-ECCEEEEEEEEECCchH-----------HHHHhh
Confidence            37999999999999999999977653221  11111111111122 223  358899999932           122222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|++++-+... ..++..+......  ..|+++|+||+|....  ..+..  .     ....+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~--~-----~~~~~~~~~  135 (162)
T cd04123          67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSK--S-----EAEEYAKSV  135 (162)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCH--H-----HHHHHHHHc
Confidence            334567899999999984332222 2333444444332  2499999999997643  11110  0     122333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      ..|+..+.++.++++.+.+.+
T Consensus       136 ~~~~~------~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         136 GAKHF------ETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence            44433      456777889999999987653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.72  E-value=1.9e-16  Score=123.39  Aligned_cols=159  Identities=13%  Similarity=0.110  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|.+|||||||++.+...... .    ..+|......... .....+.+|||||...           +.....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~   75 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-T----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLWR   75 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence            489999999999999999999644331 1    1123322222222 4667899999999542           333344


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++.++|++++|+|++.+.+..+  ..+++.......  ...|++||+||.|....  ...+++...     +. + ...
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~  144 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI  144 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence            45788999999999983322221  223333332211  12489999999997543  222222211     00 0 011


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+...   ..+.|++.+.++.+++++|...+
T Consensus       145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence            112111   11468888999999999987654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.72  E-value=3e-16  Score=123.14  Aligned_cols=164  Identities=15%  Similarity=0.112  Sum_probs=92.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||++++++...... ....+  .........  ...+..+.+|||||..           .+...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKG--FNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccc--cceeEEEeeccCCCceEEEEEECCCcH-----------hHHHH
Confidence            47899999999999999999987654221 11111  111111111  1234679999999943           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++..-+..+ ..++..+..... ....|++||+||+|....  ...++. ..     +..+...
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~~-~~-----~~~~~~~  139 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSEV-EK-----LLALHEL  139 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHHH-HH-----HhCcccc
Confidence            3445678899999999983211111 122222222211 123499999999997543  222221 11     1000001


Q ss_pred             cCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ... .+..    .+.|++.+.|++++++.|.+.+.
T Consensus       140 ~~~~~~~~----~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         140 SASTPWHV----QPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             CCCCceEE----EEeecccCCCHHHHHHHHHHHHH
Confidence            111 1111    25688889999999999877663

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=4e-16  Score=135.82  Aligned_cols=166  Identities=19%  Similarity=0.171  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      .|+|+|.+|||||||+|+|++..+ ... ....+|.......+...++..++++||||+.........+...+...+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP-KIA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC-ccc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            799999999999999999998663 111 112233333333333223678999999999754332333444444443   


Q ss_pred             CCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          101 KDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                       ..++++++|+|++..   -...+ ..+.+.+......-..+|++||+||+|....  .   ..        +..+.+..
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~---e~--------l~~l~~~l  300 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--E---EN--------LEEFKEKL  300 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--H---HH--------HHHHHHHh
Confidence             355999999999721   11122 3444455543221123599999999996322  1   11        22222332


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +..++      ..|+..+.++++|++.|...+...
T Consensus       301 ~~~i~------~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        301 GPKVF------PISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCcEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            32222      457788899999999999988764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.72  E-value=1.6e-16  Score=122.77  Aligned_cols=156  Identities=17%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|||||||+++++.......    ..+|......... ..+  ...+.+|||||....           ...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF-----------GGL   65 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh-----------ccc
Confidence            3799999999999999999985543211    1223222222211 112  345889999995432           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+..+|++++|+|++.+.+... ..++..+....+   ..|+++|+||+|....  .....         ...+...
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~  131 (166)
T cd00877          66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK  131 (166)
T ss_pred             cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence            1224567899999999984333222 234455555443   3499999999997533  11111         1122222


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      +.|++.+.++.++++.+.+.+.+
T Consensus       132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence            223333      56888889999999999877654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.72  E-value=6.7e-16  Score=119.04  Aligned_cols=163  Identities=18%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh---
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---   98 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~---   98 (277)
                      |+++|++|+|||||+|.|++...........+.|......    .....+.+|||||+.....+. .....+...+.   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence            8999999999999999999433322212222223222222    122388999999998754422 11222322222   


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh-hcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~  177 (277)
                      ......+++++++|.....+..+...+.++... +    .|+++|+||+|....  .........     +...++ ...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence            223456889999999855556666666676653 3    389999999998655  333333332     333333 122


Q ss_pred             -CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 -~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                       .+++      +.|+..+.++.++++.|...
T Consensus       145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPII------LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCceE------EEecCCCCCHHHHHHHHHHh
Confidence             2333      45666778899999888764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.72  E-value=2.5e-16  Score=123.45  Aligned_cols=162  Identities=12%  Similarity=0.082  Sum_probs=95.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|++|||||||++.+.......  .   .+|........ ...+..+.+|||||..           .+...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~---~~T~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~   77 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT--T---IPTIGFNVETV-EYKNLKFTMWDVGGQD-----------KLRPL   77 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c---CCccccceEEE-EECCEEEEEEECCCCH-----------hHHHH
Confidence            345899999999999999999997544321  1   12222222222 2466789999999943           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.+-+..+  ...++...+...  ...|++||+||.|..+.  ...++....     +.  +.
T Consensus        78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~  146 (182)
T PTZ00133         78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH  146 (182)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence            4456788999999999983221111  122333332221  12489999999996543  222222111     00  01


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+.. .++.    .+.|++.+.|+++++++|.+.+..
T Consensus       147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHHH
Confidence            1111 1221    145788889999999999876654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.72  E-value=3.2e-16  Score=120.35  Aligned_cols=156  Identities=21%  Similarity=0.159  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|+|||||++.+++.......  ..+............   .....+.+|||||..           .+...
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~   67 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAI   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHh
Confidence            37999999999999999999976542211  111111111111111   123468999999932           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+++++|++++|+|+..+-+... ..++..+.....   ..|+++|+||+|.........++         ...+...
T Consensus        68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~  135 (162)
T cd04106          68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVITNEE---------AEALAKR  135 (162)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCCHHH---------HHHHHHH
Confidence            4445678899999999983322222 233333333222   24999999999976541111111         2333444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .+.+++      +.|++.+.+++++++.|..
T Consensus       136 ~~~~~~------~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         136 LQLPLF------RTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             cCCeEE------EEECCCCCCHHHHHHHHHH
Confidence            444443      4567777899999988764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.72  E-value=8.3e-17  Score=123.44  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|||||||++.+++......     .+|...............+.+|||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            489999999999999999998765322     11222222222222346799999999542           22333334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +..+|++++|+|++...+...  ...++...+...  ...|+++|+||+|....  ...++.... ..  ...+...  .
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~--~  135 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSD--R  135 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCC--C
Confidence            567899999999983322222  112222222111  12499999999997543  222222111 00  0101000  1


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .+.    ..++|++.+.|++++++.|.+
T Consensus       136 ~~~----~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         136 DWY----VQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cEE----EEecccccCCChHHHHHHHhc
Confidence            111    125788899999999998854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04117 Rab15 Rab15 subfamily

Probab=99.72  E-value=2.6e-16  Score=120.95  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      +|+++|++|+|||||++.+++..+.+..    ..|...  ...... ..+  ..+.+|||||..           .+...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence            6999999999999999999876653221    222222  112222 333  357899999943           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+-+... ..++..+......  ..|+++|.||.|....  ..+...  .     ...+...
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~--~~v~~~--~-----~~~~~~~  134 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK--RQVGDE--Q-----GNKLAKE  134 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCHH--H-----HHHHHHH
Confidence            3445678899999999984322222 2333334333222  2489999999997543  111110  0     2223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+..++      ++|++.+.++.+++..|.+.
T Consensus       135 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         135 YGMDFF------ETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHhh
Confidence            333332      56888889999999988654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=4.3e-16  Score=137.30  Aligned_cols=169  Identities=16%  Similarity=0.142  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      -.|+|||.+|||||||+|+|++....   ++..+.|+...........+..++|+||||+.+.......+..++.+.+  
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--  234 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--  234 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence            46999999999999999999986541   2222333333333334456778999999999754333333444444443  


Q ss_pred             cCCCccEEEEEEeCCCC----CCHHHH-HHHHHHHHHhC---------cCccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779          100 AKDGIHAFLVVFSVTNR----FSQEEE-TAVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~----~~~~~~-~~~~~l~~~~~---------~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~  165 (277)
                        ..+|++++|+|++..    -...+. .+...|.....         .-..+|++||+||+|....  ..+.+.+    
T Consensus       235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l----  306 (500)
T PRK12296        235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV----  306 (500)
T ss_pred             --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence              456999999999721    111121 22223332211         1123599999999997644  2332222    


Q ss_pred             CchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                          ...+...+..++      ..|+..+.++.+|+..|..++...
T Consensus       307 ----~~~l~~~g~~Vf------~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        307 ----RPELEARGWPVF------EVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             ----HHHHHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHhh
Confidence                222333333333      457777889999999999888653

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.72  E-value=2.8e-16  Score=122.95  Aligned_cols=160  Identities=15%  Similarity=0.095  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|..|||||||++.+........     .+|........ ...+..+.+|||||..           .+...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~-~~~~~~~~i~D~~Gq~-----------~~~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQD-----------KIRPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEE-EECCEEEEEEECCCCH-----------HHHHH
Confidence            3458999999999999999999985443211     22222222222 2567789999999932           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.+-+..+  ...++...+...  ...|++||+||.|....  ...+++..         .+.
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~  144 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLG  144 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence            4456788999999999983322221  222333332211  12499999999997544  32222221         111


Q ss_pred             hc--CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~--~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..  ..+...+   .++||+.+.|+.+++++|...+.
T Consensus       145 l~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        145 LHSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             ccccCCCceEE---EeccCCCCCCHHHHHHHHHHHHh
Confidence            11  1111111   14578888999999999977654

>cd04128 Spg1 Spg1p

Probab=99.72  E-value=4.6e-16  Score=121.86  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|.+|||||||++.+++..+...    ..+|...... .....++  ..+.+|||+|..           .+...
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~----~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~-----------~~~~~   65 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGVNFMEKTISIRGTEITFSIWDLGGQR-----------EFINM   65 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCEEEEEEEEeCCCch-----------hHHHh
Confidence            4799999999999999999987654221    1222221111 1122344  357899999943           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc-ccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~-~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...+++++|++++|+|++++.+..+ ..++..+.......  .| ++|+||+|...... .........     ...+..
T Consensus        66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~  137 (182)
T cd04128          66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAK  137 (182)
T ss_pred             hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHHH
Confidence            4456789999999999984433333 24444454432222  25 67899999753200 111111111     333434


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ++||+.+.+++++++.+.+.+..
T Consensus       138 ~~~~~~~------e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         138 AMKAPLI------FCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            4443332      56888899999999998876643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.72  E-value=1.9e-16  Score=121.36  Aligned_cols=155  Identities=14%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|.+|||||||++.+....+. ..    .+|........ ......+.+|||||..           .+......
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~----~pt~g~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~~~   63 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETV-EYKNISFTVWDVGGQD-----------KIRPLWRH   63 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCCCCcceEEE-EECCEEEEEEECCCCH-----------hHHHHHHH
Confidence            37999999999999999999755432 21    12222222222 2456779999999953           23333445


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ++.++|++++|+|++.+.+..+  ...++.......  ...|++|++||.|....  ....+....     + .+ ....
T Consensus        64 ~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~~-~~~~  132 (159)
T cd04150          64 YFQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L-GL-HSLR  132 (159)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h-Cc-cccC
Confidence            6788999999999983322211  122233322111  12499999999997543  222222211     1 00 0001


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      .+...   ..++|++.+.|+++++++|.
T Consensus       133 ~~~~~---~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         133 NRNWY---IQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCEE---EEEeeCCCCCCHHHHHHHHh
Confidence            11111   12568888999999998874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.72  E-value=5.2e-16  Score=122.21  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-C--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ++|+++|++|+|||||++.+++.......    .+|....+....... +  ..+.+|||||..           ++...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY----VPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCC----CCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence            47999999999999999999977653221    223222222222222 2  358899999943           22233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.+.+..+.  .++..+... ..+  .|+++|+||.|....  ......+.   ......+..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~  137 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK  137 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence            33456789999999999844333332  233333332 222  499999999997543  11100110   011333444


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+. .++      .+|++.+.++.+++..+...+..
T Consensus       138 ~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         138 KQGAFAYL------ECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             HcCCcEEE------EccCCCCCCHHHHHHHHHHHHHh
Confidence            4443 332      56788889999999998877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.72  E-value=1.5e-16  Score=127.28  Aligned_cols=155  Identities=12%  Similarity=0.095  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEEEEEeeeCCceE
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV   71 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (277)
                      +|+++|++|+|||||+++|+...-.-..                             ....+.|........ .+.+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence            5899999999999999999753311000                             001344544444443 3678899


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      .||||||+.+           +...+..+...+|++++|+|++.+....+...+.++.. .+.   .++++|+||+|...
T Consensus        80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence            9999999532           22222334567899999999986665555555454443 332   26788999999764


Q ss_pred             cccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779          152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  199 (277)
                      .....+......     ++.++...+....   ...+.|+..+.++.+
T Consensus       145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~  184 (208)
T cd04166         145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS  184 (208)
T ss_pred             CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence            311223344443     5555555553210   112446666655543

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04134 Rho3 Rho3 subfamily

Probab=99.72  E-value=2.1e-16  Score=124.63  Aligned_cols=165  Identities=18%  Similarity=0.114  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|++|||||||++.+++..+....    .+|....+......++  ..+.+|||||...           +....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence            47999999999999999999977653221    1222222211122333  4588999999542           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----C-CchHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~-~~~~~  170 (277)
                      ..++..+|++++|+|++.+-+...  ..++..+.....   ..|++||.||+|....  ....+.....    . .....
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL  140 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence            335678999999999984433322  234555554322   2499999999997654  2222111100    0 00012


Q ss_pred             HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+....+. .++      ++||+.+.++++++..+.+.+..
T Consensus       141 ~~~~~~~~~~~~------e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         141 AVAKRINALRYL------ECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHHHHcCCCEEE------EccCCcCCCHHHHHHHHHHHHhc
Confidence            23333232 222      56888889999999999877643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.72  E-value=1.6e-16  Score=123.47  Aligned_cols=159  Identities=18%  Similarity=0.136  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|+|||||++.|++......     .+|........ ...+..+.+|||||..           .+...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i-~~~~~~~~~~D~~G~~-----------~~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV-QSDGFKLNVWDIGGQR-----------AIRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE-EECCEEEEEEECCCCH-----------HHHHH
Confidence            4468999999999999999999998754211     11111112222 2457789999999943           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHH-HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~-~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|+....+... ...+ ..+.....  ...|+++++||+|....  ....++...     +. + .
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~  143 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLATA--APAEEIAEA-----LN-L-H  143 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-c
Confidence            3344577899999999983211111 1111 12221111  12499999999997654  333333221     10 0 0


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ....+...+   .+.|++.+.|+++++++|.+
T Consensus       144 ~~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         144 DLRDRTWHI---QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ccCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence            111121111   25688899999999998753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN03118 Rab family protein; Provisional

Probab=99.72  E-value=9.1e-16  Score=123.19  Aligned_cols=167  Identities=16%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVG   90 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~   90 (277)
                      .++.....+|+|+|++|||||||+++|++....  ... ............. .++  ..+.||||||...         
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~---------   74 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER---------   74 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchh---------
Confidence            344455689999999999999999999976541  111 1111222222222 233  4688999999543         


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (277)
Q Consensus        91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~  168 (277)
                        +......+++.+|++++|+|++.+-+....  .+...+.. .......|+++|.||+|....  ..+...  .     
T Consensus        75 --~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~--~-----  142 (211)
T PLN03118         75 --FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE--E-----  142 (211)
T ss_pred             --hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH--H-----
Confidence              222233446788999999999843222222  12222322 222222489999999997543  121100  0     


Q ss_pred             HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+....+..++      ++|++.+.+++++++.|...+..
T Consensus       143 ~~~~~~~~~~~~~------e~SAk~~~~v~~l~~~l~~~~~~  178 (211)
T PLN03118        143 GMALAKEHGCLFL------ECSAKTRENVEQCFEELALKIME  178 (211)
T ss_pred             HHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            1222222233222      56777889999999999888754

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.72  E-value=5.4e-16  Score=120.79  Aligned_cols=162  Identities=19%  Similarity=0.112  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|+|||||++.+....+...    ..+|...........++  ..+.+|||||...           +....
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRLR   66 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEECCEEEEEEEEECCCccc-----------hhhhh
Confidence            6899999999999999999997654221    12232222211112344  4578999999543           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC-----chHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~-----~~~~  170 (277)
                      ..++.++|++++|+|++.+-+....  .++..+.... ..  .|++||.||.|....  ..+.+.+.....     ...+
T Consensus        67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~  141 (175)
T cd01874          67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PK--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE  141 (175)
T ss_pred             hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence            3356789999999999844333332  2444454432 22  499999999997544  222222211000     1122


Q ss_pred             HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+....+. .++      ++||+.+.|+.++++.+.+.
T Consensus       142 ~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         142 KLARDLKAVKYV------ECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             HHHHHhCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence            23333332 333      56888889999999887653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01890 LepA LepA subfamily

Probab=99.72  E-value=1.1e-16  Score=125.14  Aligned_cols=160  Identities=18%  Similarity=0.148  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC------ccccCC-------CCCcceeeEEEEEe----eeCCceEEEEeCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKA------FKASAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~------~~~~~~-------~~~~t~~~~~~~~~----~~~~~~~~liDtpG~~~~   82 (277)
                      ++|+++|++|+|||||+++|++...      +.....       ..+.+.........    ...+..+.+|||||..+.
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            4699999999999999999986321      000000       01122222111111    123456889999997642


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                                 ......++.++|++++|+|++.+.+..+...+..+..   .+  .|+++|+||+|....   .......
T Consensus        81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~---~~~~~~~  141 (179)
T cd01890          81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA---DPERVKQ  141 (179)
T ss_pred             -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC---CHHHHHH
Confidence                       2222334557799999999985555555444433322   12  389999999997533   1111122


Q ss_pred             ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .     +.   ...+...   ......|++.+.++++|++.+...++
T Consensus       142 ~-----~~---~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         142 Q-----IE---DVLGLDP---SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             H-----HH---HHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            1     22   2222210   11236688889999999999877653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00154 Rab Rab family

Probab=99.71  E-value=4.4e-16  Score=118.72  Aligned_cols=154  Identities=19%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-ee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|+|||||+|.+++.......    ..|......... ..  ....+.+||+||..           .+...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----------~~~~~   65 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-----------RFRSI   65 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChH-----------HHHHH
Confidence            47999999999999999999987764331    112222222111 12  23568899999943           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+..+|++++|+|++.+-+... ..++..+......  ..|+++++||+|..... ....+.        ...+...
T Consensus        66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~  134 (159)
T cd00154          66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE  134 (159)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence            3445677899999999983211122 2344444443322  24999999999985221 111111        3334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      .+..++      ..|+..+.++.++++.|.
T Consensus       135 ~~~~~~------~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         135 NGLLFF------ETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cCCeEE------EEecCCCCCHHHHHHHHh
Confidence            344443      346666788899888764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.71  E-value=6.2e-16  Score=122.50  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=73.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC-CCccccC-------------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .++|+++|++|+|||||+++|++. ..+....             ...+.+......... +.+..+.+|||||..+   
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~---   77 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHAD---   77 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHH---
Confidence            368999999999999999999852 1121110             012223322222222 5677899999999653   


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                              +......++.++|++++|+|+..+.......++..+..   .+  .|+++|+||+|....
T Consensus        78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA  132 (194)
T ss_pred             --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence                    23333345567899999999985443333343443332   22  389999999997543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01889 SelB_euk SelB subfamily

Probab=99.71  E-value=2.2e-16  Score=124.83  Aligned_cols=169  Identities=18%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEEEEEee-------------eCCceEEEEeCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD   81 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~liDtpG~~~   81 (277)
                      .+|+++|++|+|||||+++|++..   .+...  ....+.|..........             ..+..+.+|||||..+
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            379999999999999999998631   11000  00112333333222221             1256799999999632


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                                 +...+......+|++++|+|+....+..+...+.+.. ..+.    |+++++||+|....  ......+
T Consensus        81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~~----~~iiv~NK~Dl~~~--~~~~~~~  142 (192)
T cd01889          81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILCK----KLIVVLNKIDLIPE--EERERKI  142 (192)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcCC----CEEEEEECcccCCH--HHHHHHH
Confidence                       2222222345679999999998555555444444332 2332    89999999998754  3333333


Q ss_pred             cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .. ....+...+...+..   .-...+.|++.+.++.+|++.+...++.
T Consensus       143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            32 000122222111111   0112356888889999999999887653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.71  E-value=1.6e-15  Score=118.65  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|.+|+|||||++.+++..+....    .+|...........++  ..+.+|||+|-.           ++..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e-----------~~~~   68 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSP-----------YYDN   68 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEECCEEEEEEEEECCCch-----------hhHh
Confidence            3478999999999999999999876642221    2222222211122343  358899999932           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-CCchH
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPL  169 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~~~~~  169 (277)
                      ....+++++|++++|+|++.+.+...  ..++..+..... .  .|++||+||.|+.... ..+......   . .....
T Consensus        69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~  144 (182)
T cd04172          69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG  144 (182)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence            44456789999999999995544443  345556666432 3  4999999999964321 111000000   0 00123


Q ss_pred             HHHHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHH
Q 023779          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (277)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~  207 (277)
                      .++....+. .|+      ++||+.+.+ +.+++..+.+.
T Consensus       145 ~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         145 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence            445555553 344      578888888 99999888764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04157 Arl6 Arl6 subfamily

Probab=99.71  E-value=1.7e-16  Score=121.87  Aligned_cols=158  Identities=13%  Similarity=0.056  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|||||||++.|++...+....   .+|........ ...+..+.+|||||...           +......+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~---~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQII---VPTVGFNVESF-EKGNLSFTAFDMSGQGK-----------YRGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCccee---cCccccceEEE-EECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence            48999999999999999999865322221   12222111212 24667899999999542           22333345


Q ss_pred             CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +.++|++++|+|++.+.+... ...+..+..... .....|+++|+||+|....  .........     + .+......
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l-~~~~~~~~  137 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----L-GLENIKDK  137 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----h-CCccccCc
Confidence            678899999999984332211 222232222110 0123499999999997644  222211111     0 00000011


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      .+.    ..+.|++.+.++++++++|.
T Consensus       138 ~~~----~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         138 PWH----IFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             eEE----EEEeeCCCCCchHHHHHHHh
Confidence            111    12568888999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04116 Rab9 Rab9 subfamily

Probab=99.71  E-value=5.1e-16  Score=120.31  Aligned_cols=160  Identities=18%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|+|||||++.+++........  ............. .++.  .+.+|||||..           .+..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~   69 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTLQIWDTAGQE-----------RFRS   69 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence            34899999999999999999999766432221  1111111111222 3333  47899999932           3333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ....++..+|++++|++++.+-+... ..+...+......  ....|+++|+||+|..... .... .        .+++
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~-~--------~~~~  139 (170)
T cd04116          70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE-E--------AQAW  139 (170)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH-H--------HHHH
Confidence            44445678899999999984322222 2233333332211  1224999999999975330 1111 1        3344


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ....+...+     .+.|++.+.++.++++.+.+
T Consensus       140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         140 CRENGDYPY-----FETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHCCCCeE-----EEEECCCCCCHHHHHHHHHh
Confidence            444442222     25677888899999888764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.71  E-value=2.7e-16  Score=120.39  Aligned_cols=156  Identities=15%  Similarity=0.057  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|||||||++++++... ...    ..|........ .+.+..+.+|||||...           +.......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETV-EYKNVSFTVWDVGGQDK-----------IRPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEE-EECCEEEEEEECCCChh-----------hHHHHHHH
Confidence            589999999999999999998763 211    22222222222 24567899999999543           12223334


Q ss_pred             CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +..+|++++|+|+..+-+... ...+..+..... ....|+++|+||+|....  ...++....     +...  .....
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~--~~~~~  133 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLE--KILGR  133 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChh--hccCC
Confidence            567799999999983211111 122222222111 122499999999998765  323222211     1100  01111


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ...   ....|++.+.++.++++.|..
T Consensus       134 ~~~---~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         134 RWH---IQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             cEE---EEEeeCCCCCCHHHHHHHHhh
Confidence            111   124577788999999888753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.71  E-value=3.2e-16  Score=121.97  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|+|||||++.|++......     .+|........ .+.+..+.+|||||...           +.....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEI-VYKNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEE-EECCeEEEEEECCCCHH-----------HHHHHH
Confidence            47899999999999999999987654221     12222222222 25677899999999542           233333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++.++|++++|+|++.+-+...  ...++.......  ...|++|++||+|....  ...++....     +. + ...
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~--~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~-~-~~~  146 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPL--TKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISES-----LG-L-TSI  146 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-c-ccc
Confidence            45678899999999983321111  112222222111  12499999999997543  222222111     10 0 000


Q ss_pred             -CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                       ...+.    ..++||..+.+++++++.|.
T Consensus       147 ~~~~~~----~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         147 RDHTWH----IQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             cCCceE----EEecccCCCCCHHHHHHHHh
Confidence             11121    12568888899999998875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04118 Rab24 Rab24 subfamily

Probab=99.71  E-value=4.5e-16  Score=123.18  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|+|||||++++++..+.. +.  ...|....+. .....++.  .+.+|||||...           +...
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~   66 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLV-GP--YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER-----------YEAM   66 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCC-cC--cccceeeEEEEEEEEECCEEEEEEEEECCCchh-----------hhhh
Confidence            479999999999999999999766422 11  1222221111 11223443  466999999532           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++..-+... ..++..+... ..  ..|+++|+||+|....  ......+.   ......+...
T Consensus        67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~  138 (193)
T cd04118          67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADE  138 (193)
T ss_pred             hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccccc--ccccCccC---HHHHHHHHHH
Confidence            2334678899999999983322221 2344444443 22  2499999999997543  10000000   0012333333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.+|++.+.+.+..
T Consensus       139 ~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         139 IKAQHF------ETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            343333      45777889999999999877643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01863 Rab18 Rab18 subfamily

Probab=99.71  E-value=5.9e-16  Score=118.81  Aligned_cols=157  Identities=20%  Similarity=0.143  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||+|+|++.........  ..+.+....... ..+  ..+.+|||||...           +....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAA--TIGVDFKVKTLT-VDGKKVKLAIWDTAGQER-----------FRTLT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCC--cccceEEEEEEE-ECCEEEEEEEEECCCchh-----------hhhhh
Confidence            4799999999999999999997764222211  111121111111 232  4688999999432           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...++.+|++++|+|++..-+... ..++..+..... ....|+++|+||+|..... ...++         ...+....
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~  135 (161)
T cd01863          67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKH  135 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHc
Confidence            334578899999999983332222 233444444322 2234899999999976331 11221         22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +..++      +.|++.+.++.++++.+...
T Consensus       136 ~~~~~------~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         136 NMLFI------ETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             CCEEE------EEecCCCCCHHHHHHHHHHh
Confidence            33333      45777788999999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04111 Rab39 Rab39 subfamily

Probab=99.71  E-value=8.4e-16  Score=123.21  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++.......  ..+.........+...++  ..+.+|||||..           .+....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~~   69 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSIT   69 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHHH
Confidence            78999999999999999999977652221  112222221222221223  358899999943           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHHhh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~  175 (277)
                      ..++.++|++++|+|++.+-+... ..++..+...... ...|++||.||.|....  ..+ .+.        ...+...
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~~~--------~~~~~~~  138 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTREE--------AEKLAKD  138 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCHHH--------HHHHHHH
Confidence            445678899999999984322222 2333333333222 12368899999997543  111 111        2233444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      +.|++.+.++.++++.|.+.+..
T Consensus       139 ~~~~~~------e~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         139 LGMKYI------ETSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             hCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            443333      46778889999999999886654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK11058 GTPase HflX; Provisional

Probab=99.71  E-value=9.8e-16  Score=134.15  Aligned_cols=165  Identities=17%  Similarity=0.089  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|.+|||||||+|+|++...+...  ..+.|...............+.+|||||+....  ...+...+...+ .
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l--p~~lve~f~~tl-~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHL--PHDLVAAFKATL-Q  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccC--CHHHHHHHHHHH-H
Confidence            57999999999999999999987754222  123343333333332334478999999985321  122233344333 3


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      ....+|++++|+|++.+...... .+..++..+...+  .|+++|+||+|....  ..  ..+..          ...+.
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~~--~~~~~----------~~~~~  336 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--FE--PRIDR----------DEENK  336 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--hh--HHHHH----------HhcCC
Confidence            45788999999999854433333 2334455442222  499999999997643  11  11110          01121


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .++     ...|++.+.|++.|++.|...+..
T Consensus       337 ~~~-----v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        337 PIR-----VWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             Cce-----EEEeCCCCCCHHHHHHHHHHHhhh
Confidence            111     235888899999999999988754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.71  E-value=3e-16  Score=126.54  Aligned_cols=196  Identities=17%  Similarity=0.176  Sum_probs=126.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVKC   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~   96 (277)
                      +.++|+++|.+|+|||||.|.+.|..+  +..+....|+++....+.+.+..++.|+||||+....... ......+...
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            568999999999999999999999998  4456677888888888877888999999999998654322 1112222233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH--HHHhcccCCch-HHHHH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL--EDFLGHECPKP-LKEIL  173 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l--~~~l~~~~~~~-~~~~~  173 (277)
                      .+.+...+|++++++|++..-.....+.+..+.....-    |-++|+||.|.......-+  .+.+....... ..++-
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            34456788999999999843333334566666665333    8999999999875410000  11111100000 01111


Q ss_pred             hhcCC-e----------EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          174 QLCDN-R----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       174 ~~~~~-~----------~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                      +++.. .          +--|......|+..+.++.+|.+++....+. +...|+.++
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i  281 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADI  281 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCccc
Confidence            22110 1          2224444566889999999999999887654 444565554

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.70  E-value=3.6e-16  Score=121.72  Aligned_cols=162  Identities=20%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCC
Q 023779           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (277)
Q Consensus        24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (277)
                      ++|++|||||||+|+|++.... .+. ..+.|........ .+. +..+.+|||||+.........+...+..    .+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~~~-~~~~t~~~~~~~~-~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-VAN-YPFTTLEPNLGVV-EVPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-ccC-CCceeecCcceEE-EcCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            5899999999999999987641 111 1222333333322 255 7889999999986432222222222222    245


Q ss_pred             CccEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhCc-----CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779          103 GIHAFLVVFSVTNRF-----S-QEE-ETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus       103 ~~~~~l~v~d~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      ++|++++|+|+....     . ..+ ..+...+......     -...|+++|+||+|....  ........       .
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~  144 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R  144 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence            679999999998332     2 222 2222333322110     023499999999998755  33322210       1


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .........++      ..|+..+.++.++++.+...
T Consensus       145 ~~~~~~~~~~~------~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         145 ELALEEGAEVV------PISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHhcCCCCCEE------EEehhhhcCHHHHHHHHHhh
Confidence            11111122222      45777888999998887553

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04151 Arl1 Arl1 subfamily

Probab=99.70  E-value=2.6e-16  Score=120.52  Aligned_cols=155  Identities=15%  Similarity=0.042  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|+|||||++.|+.......     .+|........ ...+..+.+|||||...           +......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETV-TYKNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEE-EECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            589999999999999999976554221     12222222222 24567899999999542           22333445


Q ss_pred             CCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +..+|++++|+|++.+.+..  ...+...+.....  ...|+++|+||+|....  ....+....     +. . .....
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~  132 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD  132 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence            67889999999998322111  1222222222111  12499999999997644  222222111     10 0 00011


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ...   ...+.|++.+.+++++++.+.+
T Consensus       133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         133 RTW---SIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence            101   1236688889999999998753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04114 Rab30 Rab30 subfamily

Probab=99.70  E-value=7.7e-16  Score=119.14  Aligned_cols=157  Identities=16%  Similarity=0.120  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++....+...  .+.+........ .+.+  ..+.+|||||...           +....
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~-----------~~~~~   73 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTV-EIKGEKIKLQIWDTAGQER-----------FRSIT   73 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEE-EECCEEEEEEEEECCCcHH-----------HHHHH
Confidence            889999999999999999998655422211  111112222222 2344  3478899999432           22232


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++...+... ..++..+......+  .|+++|.||+|....  ..+....       .+.+....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~~  142 (169)
T cd04114          74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQR-------AEEFSDAQ  142 (169)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHH-------HHHHHHHc
Confidence            345677899999999983322221 23344444443333  388999999997643  2221111       11122222


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...++      .+|+..+.++.++++.|.+.
T Consensus       143 ~~~~~------~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         143 DMYYL------ETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             CCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence            22222      56778889999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.70  E-value=1.2e-15  Score=118.19  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH-HH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV-KC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~-~~   96 (277)
                      .+|+++|++|+|||||++.+++.......  ............ ....+  ..+.+|||||...           +. ..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~-----------~~~~~   68 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERT-VEIDGERIKVQLWDTAGQER-----------FRKSM   68 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEE-EEECCeEEEEEEEeCCChHH-----------HHHhh
Confidence            78999999999999999999876542221  111111111111 22344  4688999999432           22 12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+-+.... .++..+..... ....|+++|.||+|....  ..+ .+.        ...+..
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~~--------~~~~~~  137 (170)
T cd04115          69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ--IQVPTDL--------AQRFAD  137 (170)
T ss_pred             HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh--cCCCHHH--------HHHHHH
Confidence            33456788999999999844333332 33333333221 122499999999997543  111 111        122333


Q ss_pred             hcCCeEEEEeCCCcccccC---hhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~---~~~~~~L~~~i~~~~  208 (277)
                      .....++.      +|++.   ..++.+++..+.+.+
T Consensus       138 ~~~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         138 AHSMPLFE------TSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HcCCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence            33333433      45554   567888777765543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01862 Rab7 Rab7 subfamily

Probab=99.70  E-value=1.5e-15  Score=117.84  Aligned_cols=162  Identities=17%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||+|++++........  ............ .+.+.  .+.+|||||...           +....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~-----------~~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEV-TVDDKLVTLQIWDTAGQER-----------FQSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEE-EECCEEEEEEEEeCCChHH-----------HHhHH
Confidence            379999999999999999999776422211  111111111112 23443  467999999432           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ..++.++|++++++|+..+.+.... .+...+...+..  ....|+++|+||+|...+.....+ .        ...+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~  137 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ  137 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence            3456788999999999833222221 222222222221  112499999999998632101111 1        223444


Q ss_pred             hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+ ..++      ..|+..+.++..+++.|...+.+
T Consensus       138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         138 SNGNIPYF------ETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             HcCCceEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence            444 2333      45777889999999998876544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04131 Rnd Rnd subfamily

Probab=99.70  E-value=2.9e-15  Score=116.84  Aligned_cols=163  Identities=15%  Similarity=0.075  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+.+..+...    ..+|...........++  ..+.+|||||..           .+....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~-----------~~~~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSP-----------YYDNVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhcc
Confidence            5899999999999999999997664222    12222222211122344  347899999943           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-CCchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~~~~~~~  171 (277)
                      ..+++++|++++|+|++.+-+...  ..++..+..... .  .|+++|.||.|+.... ......-..   . ......+
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~  142 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA  142 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence            446789999999999985544443  345556666543 3  3999999999964320 111110000   0 0112344


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHH
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~  207 (277)
                      +....+. .++      ++||+.+.+ +.+++..+.+.
T Consensus       143 ~a~~~~~~~~~------E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         143 IAKQLGAEIYL------ECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHhCCCEEE------ECccCcCCcCHHHHHHHHHHH
Confidence            4444453 333      568888875 99999888764

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00369 Ras-like protein; Provisional

Probab=99.70  E-value=7.5e-16  Score=121.53  Aligned_cols=161  Identities=19%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|.+|+|||||++++++..+.....    +|...........++  ..+.+|||||..+.           ...
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l   69 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SAM   69 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hhh
Confidence            3899999999999999999999766432211    121111111111333  34779999996542           222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++++-+... ..++..+..... ....|+++|.||+|....  ..+....       ...+...
T Consensus        70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~  139 (189)
T PTZ00369         70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS  139 (189)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence            2334667899999999984333222 233344443322 112489999999996433  1111110       1223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.+++..+.+.+..
T Consensus       140 ~~~~~~------e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        140 FGIPFL------ETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             hCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence            333333      55778889999999998776543

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.70  E-value=4.4e-16  Score=120.09  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|++|+|||||++++++....  +..  ..|...........++.  .+.+|||||......      ....    
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~----   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFI--GEY--DPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLE----   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccc--ccc--CCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHH----
Confidence            4899999999999999999865431  111  11111111111123444  477999999763100      0111    


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .++..+|++++|+|++.+-+... ..++.++..........|+++|+||+|....  ..+...       ....+....+
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~  137 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG  137 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence            23456799999999984333222 3344555553210122499999999996433  111110       0223334444


Q ss_pred             CeEEEEeCCCcccccCh-hHHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI  208 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~-~~~~~L~~~i~~~~  208 (277)
                      ..++      ++|++.+ .++.+++..+.+.+
T Consensus       138 ~~~~------e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         138 CLFF------EVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CEEE------EeCCCCCchhHHHHHHHHHHHH
Confidence            4433      4566666 48999999887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.70  E-value=5e-16  Score=126.29  Aligned_cols=190  Identities=18%  Similarity=0.179  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      +|+++|+.|+|||||+++|+.....  ..|.              ...+.|........ .+.+..+.+|||||+.+.  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccch--
Confidence            4899999999999999999743210  0010              01122233333333 367889999999998752  


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                           ......    ++..+|++++|+|+..+.......++..+... +.    |+++++||+|....   .....+.  
T Consensus        78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a---~~~~~~~--  138 (237)
T cd04168          78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA---DLEKVYQ--  138 (237)
T ss_pred             -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC---CHHHHHH--
Confidence                 122333    34556999999999977776666676766543 32    89999999997643   3444443  


Q ss_pred             CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023779          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKRE  244 (277)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (277)
                            ++...++.+.++++.+.....                +..             ..+.  ..+.++.+.+.+++.
T Consensus       139 ------~i~~~~~~~~~~~~~p~~~~~----------------~~~-------------~~~~--~~~l~e~vae~dd~l  181 (237)
T cd04168         139 ------EIKEKLSSDIVPMQKVGLAPN----------------ICE-------------TNEI--DDEFWETLAEGDDEL  181 (237)
T ss_pred             ------HHHHHHCCCeEEEECCcEeee----------------eee-------------eeec--cHHHHHHHhcCCHHH
Confidence                  344556777777664421100                000             0011  134456667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779          245 ISKLMGQMQESYEDRIKRMAEMRAG  269 (277)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
                      ++++.+..+...++..+.+++.+.+
T Consensus       182 ~e~yl~~~~~~~~el~~~l~~~~~~  206 (237)
T cd04168         182 LEKYLEGGPIEELELDNELSARIAK  206 (237)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            8888887777776777777666554

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01875 RhoG RhoG subfamily

Probab=99.70  E-value=2.4e-15  Score=118.82  Aligned_cols=167  Identities=17%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|..|||||||++.++...+....    .+|....+......++  ..+.+|||||..           .+...
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e-----------~~~~l   67 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEY----IPTVFDNYSAQTAVDGRTVSLNLWDTAGQE-----------EYDRL   67 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCC----CCceEeeeEEEEEECCEEEEEEEEECCCch-----------hhhhh
Confidence            378999999999999999999876542221    2222222211112344  357899999943           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK  170 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~  170 (277)
                      ...+++++|++++|+|++.+-+....  .++..+.... ..  .|++||.||.|..... ...+......    .....+
T Consensus        68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~  143 (191)
T cd01875          68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG  143 (191)
T ss_pred             hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence            44567899999999999844333332  2334344332 23  4999999999975330 1111111100    001123


Q ss_pred             HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+....+. .++      ++||+.+.++.+++..+.+.+..
T Consensus       144 ~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         144 ALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHhc
Confidence            34333332 333      56788889999999999877643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.70  E-value=2.7e-16  Score=123.53  Aligned_cols=166  Identities=8%  Similarity=-0.030  Sum_probs=93.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|.+|||||||+|.+++..+...     .+|........ ...+..+.+|||||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEEL-AIGNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence            4558999999999999999999998654211     11222222222 24677899999999542           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.. .... ....++..++..  ....|+++|+||+|....  ...++..+. ..  +.....
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~-~~~~-~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-l~--l~~~~~  150 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDK-ERFA-ESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYA-LG--LTNTTG  150 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHH-cC--CCcccc
Confidence            34456789999999999832 1111 111222222211  012499999999997543  223222211 00  010000


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .++..-........+|+..+.++.+++++|..
T Consensus       151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence            00000001112346688888999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.70  E-value=3.5e-16  Score=119.33  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=88.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (277)
                      |+++|++|||||||+|+|++..+....    .+|......... ..+..+.+|||||...           +......++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            799999999999999999987652221    222222222222 4557789999999532           223333445


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       102 ~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ..+|++++|+|++.. .... ....++......  ....|+++|+||+|....  .........     +. +.......
T Consensus        66 ~~~d~ii~v~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~  135 (159)
T cd04159          66 RGVNAIVYVVDAADR-TALE-AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE  135 (159)
T ss_pred             hcCCEEEEEEECCCH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence            678999999999822 1111 111223322211  112489999999997654  333322221     00 00000111


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      +..    ...|++.+.++.++++.|..
T Consensus       136 ~~~----~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         136 VSC----YSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             eEE----EEEEeccCCChHHHHHHHhh
Confidence            111    24577788899999988754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.69  E-value=7.4e-16  Score=140.62  Aligned_cols=165  Identities=17%  Similarity=0.203  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .|+++|+.++|||||+++|+|.+.... .....+.|...........++..+.||||||..           .+...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence            689999999999999999998542111 122346666665554443456789999999943           33333444


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ...++|++++|+|+..++...+...+.++.. .+..   +++||+||+|....  ..++.....     +.+++...+..
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~  139 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA  139 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence            4567899999999987777777777776655 3431   46899999998755  455554444     55555544321


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .   .+..+.|+..+.|++.|++.|..+...
T Consensus       140 ~---~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        140 E---AKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             C---CcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            0   112356788889999999999887654

>cd04133 Rop_like Rop subfamily

Probab=99.69  E-value=8.5e-16  Score=119.46  Aligned_cols=165  Identities=20%  Similarity=0.160  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|+|||||+..++...+....    .+|...........++  ..+.+|||+|...           +....
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~----~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVSVDGNTVNLGLWDTAGQED-----------YNRLR   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC----CCcceeeeEEEEEECCEEEEEEEEECCCCcc-----------ccccc
Confidence            57999999999999999999976642221    1222111111112333  4578999999543           22333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh--cccCCchHHHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEIL  173 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l--~~~~~~~~~~~~  173 (277)
                      ..+++++|++++|+|++.+-+...  ..++..+.... .+  .|++||.||+|..... .......  ..-.....+.+.
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~a  142 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PN--VPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEELR  142 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHHH
Confidence            346789999999999995555444  24555555443 23  4999999999975320 0000000  000001133444


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ...+...+.     ++||+.+.+++++++.+.+.+
T Consensus       143 ~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         143 KQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             HHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence            444432222     678889999999999998865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.69  E-value=1.5e-15  Score=118.12  Aligned_cols=162  Identities=20%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      |+++|++|||||||++++++..+....    ..+...........++.  .+.+|||||...           +......
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEVDGKPVELGLWDTAGQED-----------YDRLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEECCEEEEEEEEECCCCcc-----------cchhchh
Confidence            589999999999999999987652221    12222222222223443  488999999543           1222233


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHHHH
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEIL  173 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~~~  173 (277)
                      .+.++|++++|+|++..-+...  ..++..+.....   ..|+++|+||+|..... .....+....    .......+.
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  141 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA  141 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence            5678899999999984322222  234444544322   34999999999976431 1222221100    001123344


Q ss_pred             hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ...+. .++      ++|++.+.++.++++.+.+.+
T Consensus       142 ~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      142 KRIGAVKYL------ECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             HHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence            44443 333      468888899999999887654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=8.1e-16  Score=118.15  Aligned_cols=164  Identities=17%  Similarity=0.173  Sum_probs=112.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +.+...+|+++|++|||||+++-.+....+..+..+..+  .+.....+. .++.  .+.+|||.|           +++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~-l~g~~i~lQiWDtaG-----------Qer   73 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIE-LDGKKIKLQIWDTAG-----------QER   73 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEE-eCCeEEEEEEEEccc-----------chh
Confidence            445668999999999999999999986554222222222  222222222 4444  378999999           346


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      +.....+++++++++++|+|++..-+.+. ..|++.+.++...++  |.|+|+||+|+...  ..+..       ..-+.
T Consensus        74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~  142 (207)
T KOG0078|consen   74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEA  142 (207)
T ss_pred             HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHH
Confidence            66777778899999999999994444433 568888988877665  99999999997653  11111       11344


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +....|..++      +.||+.+.|+.+.+-.+...+.
T Consensus       143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             HHHHhCCeEE------EccccCCCCHHHHHHHHHHHHH
Confidence            5566666666      5688888999988877766554

>cd00157 Rho Rho (Ras homology) family

Probab=99.69  E-value=7.8e-16  Score=119.25  Aligned_cols=161  Identities=19%  Similarity=0.110  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|++|+|||||+++|++........    .+............  ...+.+|||||.....           ...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~   65 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV----PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLR   65 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence            479999999999999999999876522211    11111111111123  3458899999966421           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh----cccCCchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l----~~~~~~~~~~  171 (277)
                      ...+..+|++++|+|.+.+.+..  ...++..+.....   ..|+++|+||+|....  ......+    ..-.......
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~  140 (171)
T cd00157          66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK  140 (171)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence            22346789999999998322222  2234444444322   2499999999997755  2211100    0000001222


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      +....+. .++      ..|++.+.++.++++.|.+
T Consensus       141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         141 LAKEIGAIGYM------ECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHHhCCeEEE------EeecCCCCCHHHHHHHHhh
Confidence            3333333 232      5577788899999988754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.69  E-value=4.2e-16  Score=117.16  Aligned_cols=139  Identities=19%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|+|||||+|++++....      ...|...     . +..   .+|||||....       ...+...+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~~-----~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQAV-----E-YND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------cccceeE-----E-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            7999999999999999999977531      1112111     1 222   58999996310       11222222234


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-e
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R  179 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~  179 (277)
                      ++++|++++|+|++.+.+.....++.    ...    .|+++|+||+|..... ...+ .        ..++.+..+. .
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~~  121 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAEP  121 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCCc
Confidence            78899999999998544433322222    222    2899999999975431 1111 1        2233333332 2


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      ++      ..|++.+.+++++++.+.
T Consensus       122 ~~------~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       122 IF------EISSVDEQGLEALVDYLN  141 (142)
T ss_pred             EE------EEecCCCCCHHHHHHHHh
Confidence            22      457788899999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN03108 Rab family protein; Provisional

Probab=99.68  E-value=3.3e-15  Score=119.75  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=92.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|++|+|||||++.+++..+......  ........... ...+  ..+.+|||||..           .+...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~~~~~~~i-~~~~~~i~l~l~Dt~G~~-----------~~~~~   71 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMI-TIDNKPIKLQIWDTAGQE-----------SFRSI   71 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CccceEEEEEE-EECCEEEEEEEEeCCCcH-----------HHHHH
Confidence            47999999999999999999997664322211  11111111111 2333  347899999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+..+|++++|+|++..-+... ..++..+......  ..|+++|+||+|.........++         ...+...
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~  140 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE  140 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence            3334567899999999983322222 1333334333322  24999999999975431011111         2223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      +.|++.+.++.+++..+.+.+
T Consensus       141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        141 HGLIFM------EASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence            333333      457777788999887776554

>cd00880 Era_like Era (E

Probab=99.68  E-value=2.7e-15  Score=114.25  Aligned_cols=162  Identities=23%  Similarity=0.206  Sum_probs=93.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCC
Q 023779           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (277)
Q Consensus        24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (277)
                      ++|++|+|||||+|+|++......+ ...+.+...............+.+|||||+.+............    ...+..
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence            5899999999999999987654222 12223333333333322267899999999987654332211122    223456


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE
Q 023779          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (277)
Q Consensus       104 ~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  183 (277)
                      +|++++|+++..........++.....   ..  .|+++|+||+|....  .........    ...........+++  
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~---~~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~--  142 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE---RG--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVI--  142 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceE--
Confidence            799999999995444444331222221   12  389999999998765  333332210    00001111122333  


Q ss_pred             eCCCcccccChhHHHHHHHHHHHH
Q 023779          184 DNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       184 ~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                          ..++..+.++..+++.+...
T Consensus       143 ----~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         143 ----AVSALTGEGIDELREALIEA  162 (163)
T ss_pred             ----EEeeeccCCHHHHHHHHHhh
Confidence                34556667889988887654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.68  E-value=2.7e-15  Score=115.28  Aligned_cols=159  Identities=20%  Similarity=0.179  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||++++++..+....    ..+...........++  ..+.+|||||...           +....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~   65 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQED-----------YAAIR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcccc----CCcchhhEEEEEEECCEEEEEEEEECCChhh-----------hhHHH
Confidence            37999999999999999999976542211    1111111111222333  4588999999543           22223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+...+++++|+++...-+... ..++..+..... ....|+++|+||+|...........         ...+....
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~  135 (164)
T cd04139          66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW  135 (164)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence            334567799999999873221111 233333333311 2235999999999976420011111         22233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      ..|+..+.++.++++.+...+.
T Consensus       136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         136 GVPYV------ETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             CCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence            43333      5677888999999999876653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00879 Sar1 Sar1 subfamily

Probab=99.68  E-value=9e-16  Score=121.16  Aligned_cols=168  Identities=10%  Similarity=-0.018  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|++|||||||++++++......     .+|.......+ .+.+..+.+|||||...           ....
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i-~~~~~~~~l~D~~G~~~-----------~~~~   79 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEEL-TIGNIKFKTFDLGGHEQ-----------ARRL   79 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence            3458999999999999999999997654211     11222222222 35677899999999432           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCc-ccccHHHHhcccCCchH--HH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPL--KE  171 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~-~~~~l~~~l~~~~~~~~--~~  171 (277)
                      ...++.++|++++|+|++..-+..  ....++......  ....|++|++||+|.... ....+.+++........  ..
T Consensus        80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (190)
T cd00879          80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS  157 (190)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccc
Confidence            334557889999999998321111  112233333221  122599999999997543 11122222211000000  00


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +.......+.    ...+|++.+.|+.+++++|...
T Consensus       158 ~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         158 LKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence            0001111111    2366889999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.68  E-value=2.2e-15  Score=121.03  Aligned_cols=113  Identities=22%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|.+|||||||++.+++..+...     .+|....... ..+....+.||||||...           +......
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~-~~~~~~~l~iwDt~G~e~-----------~~~l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYL-KQWGPYNISIWDTAGREQ-----------FHGLGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEE-EEeeEEEEEEEeCCCccc-----------chhhHHH
Confidence            4799999999999999999997765321     1222222221 223456789999999543           1222233


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      ++.++|++++|+|++.+.+.... .++..+......+  .|++||.||+|...
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            46788999999999944333332 2333333332333  38999999999764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04169 RF3 RF3 subfamily

Probab=99.68  E-value=5.8e-16  Score=127.96  Aligned_cols=117  Identities=17%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC--ccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA--FKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (277)
                      .++|+|+|+.|+|||||+++|+....  ...|..                  ..+.+.......+ .+.+..+.+|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCC
Confidence            37899999999999999999973211  111110                  0122222333333 37788999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+.       ..+...    ++..+|++++|+|++.++......++..+.. .+    .|+++++||+|....
T Consensus        81 ~~df-------~~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDF-------SEDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR  138 (267)
T ss_pred             chHH-------HHHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence            6542       122222    3346699999999986666555555554433 22    389999999996544

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.68  E-value=1.9e-15  Score=136.98  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=101.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..++|+++|++++|||||+++|.+..+...  ...+.|...........++..++||||||..++           ....
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence            557999999999999999999998765332  223455555555444223348999999997642           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ...+..+|++++|+|+..+........+..+.. .+    .|+++++||+|........+...+..     ..-.....+
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~  222 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG  222 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence            334567899999999986665555555554433 22    28999999999754311222222221     111111222


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ....    ..+.||..+.|+++|++.|..
T Consensus       223 ~~~~----~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       223 GDTI----FVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CCce----EEEEECCCCCChHHHHHhhhh
Confidence            2111    125688899999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.68  E-value=5.3e-16  Score=118.65  Aligned_cols=145  Identities=18%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+++|++|+|||||+|.|.|.....      ..|...      .+...  .+|||||+....       .++...+..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v------~~~~~--~~iDtpG~~~~~-------~~~~~~~~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV------EFNDK--GDIDTPGEYFSH-------PRWYHALIT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEE------EECCC--CcccCCccccCC-------HHHHHHHHH
Confidence            479999999999999999999764311      111111      12222  279999986432       122233233


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-  178 (277)
                      .+..+|++++|+|++...+....    ++... +..  .|+++++||+|....   ..+.         +.+++...+. 
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~  121 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GVS--KRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE  121 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH----HHHhc-cCC--CCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence            35788999999999843322221    22222 112  389999999996432   2221         2333333332 


Q ss_pred             -eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 -~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                       +++      ..|++.+.++++|++.+.+.+..
T Consensus       122 ~p~~------~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        122 EPIF------ELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCEE------EEECCCccCHHHHHHHHHHhchh
Confidence             233      46888889999999999888754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.68  E-value=2.9e-15  Score=136.36  Aligned_cols=166  Identities=18%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..|+++|++++|||||+++|+|..... ......+.|......... +++..+.+|||||..           .+...+.
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe-----------~f~~~~~   68 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHE-----------KFISNAI   68 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCHH-----------HHHHHHH
Confidence            369999999999999999999854211 111234556666555444 566889999999942           3444444


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      ..+.++|++++|+|++.+........+.++.. .+.   .+++||+||+|....  ..++.....     +.+++...+.
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~  137 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF  137 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence            45678899999999986666666666665554 343   149999999998765  444333333     5555544321


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .  .-....+.|+..+.|++++++.+..++..
T Consensus       138 ~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       138 L--KNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             C--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            1  00012255778889999999998887764

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04176 Rap2 Rap2 subgroup

Probab=99.68  E-value=1.2e-15  Score=117.36  Aligned_cols=156  Identities=19%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|.+|+|||||++.++.........    +|.. ...... ..++.  .+.||||||....           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEI-EVDSSPSVLEILDTAGTEQF-----------ASM   65 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEE-EECCEEEEEEEEECCCcccc-----------cch
Confidence            689999999999999999998766533221    1211 111112 23443  4779999996432           122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+-+..+ ..++..+..... ....|+++|+||+|....  ..+....       ...+...
T Consensus        66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~  135 (163)
T cd04176          66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE  135 (163)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence            2234567899999999984332222 334444544322 123499999999997543  1111100       1222222


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+..++      ++|++.+.++.+++..+.+.
T Consensus       136 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         136 WGCPFM------ETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             hCCEEE------EecCCCCCCHHHHHHHHHHh
Confidence            233322      55778889999999888654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.67  E-value=4e-15  Score=115.76  Aligned_cols=162  Identities=17%  Similarity=0.083  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|||||||+.+++...+....    .+|...........++  ..+.+|||||...           +....
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLR   66 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcC----CCcceeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence            68999999999999999999875542221    1122111111112344  4578999999432           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~  171 (277)
                      ..++.++|++++|+|++.+-+....  .++..+.... .  ..|++||.||.|..... ...+......    .......
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  142 (174)
T cd01871          67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA  142 (174)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence            3456789999999999843333332  3444454432 2  24999999999975321 1121111110    0011233


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      +....+. .++      ++||+.+.+++++++.+.+
T Consensus       143 ~~~~~~~~~~~------e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         143 MAKEIGAVKYL------ECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHHHcCCcEEE------EecccccCCHHHHHHHHHH
Confidence            4333332 222      6788889999999988765

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.67  E-value=1.2e-15  Score=114.05  Aligned_cols=167  Identities=16%  Similarity=0.103  Sum_probs=103.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .-++|+++|.+|+|||||+|.+....+....  ...+.......... .+++  .+.+|||.|           ++++..
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy--kaTIgadFltKev~-Vd~~~vtlQiWDTAG-----------QERFqs   73 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQY--KATIGADFLTKEVQ-VDDRSVTLQIWDTAG-----------QERFQS   73 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHh--ccccchhheeeEEE-EcCeEEEEEEEeccc-----------HHHhhh
Confidence            3489999999999999999999877653222  11222222222222 3344  377999999           234444


Q ss_pred             HHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           96 CLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .-...|+++|+.++|+|+..  .+...+...-+++...-..+ -.-|+||++||+|....  .+...-..     ..+.+
T Consensus        74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--~~r~VS~~-----~Aq~W  146 (210)
T KOG0394|consen   74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--KSRQVSEK-----KAQTW  146 (210)
T ss_pred             cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--ccceeeHH-----HHHHH
Confidence            44456899999999999983  34444444444555443222 33599999999997653  11111111     14445


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...-|.-.+.     +.||+...++...+..+.+..-.
T Consensus       147 C~s~gnipyf-----EtSAK~~~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  147 CKSKGNIPYF-----ETSAKEATNVDEAFEEIARRALA  179 (210)
T ss_pred             HHhcCCceeE-----EecccccccHHHHHHHHHHHHHh
Confidence            5554543333     56888889999999888776544

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.67  E-value=7.9e-15  Score=117.85  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++.+++..+....    .+|....+......++  ..+.||||+|..           .+....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y----~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e-----------~~~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSY----VPTVFENYTASFEIDKRRIELNMWDTSGSS-----------YYDNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCccccceEEEEEECCEEEEEEEEeCCCcH-----------HHHHHh
Confidence            68999999999999999999976653221    1222221211122344  357899999933           333444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~  171 (277)
                      ..+++++|++|+|+|++.+-+...  ..+...+...+ ..  .|++||+||+|+.... ..+...-...    .......
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~  142 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV  142 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence            556889999999999984433322  22333333322 23  3999999999975431 1111110000    0011333


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHHH
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVI  208 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~~  208 (277)
                      +....+. .|+      ++||+.+.+ +.+++..+....
T Consensus       143 ~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         143 LAKQVGAVSYV------ECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             HHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHHH
Confidence            4444453 344      567777664 999999887754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04148 RGK RGK subfamily

Probab=99.67  E-value=3.6e-15  Score=120.39  Aligned_cols=161  Identities=21%  Similarity=0.114  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .+|+++|++|||||||++.+++..+......+... ......... ......+.+|||||...          ....   
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~---   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM----------WTED---   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch----------HHHh---
Confidence            37999999999999999999765542111111111 011111111 11335688999999541          1111   


Q ss_pred             hcCC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~-~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++. ++|++++|+|++.+-+... ..++..+.... .....|+++|+||+|....  ..+...  .     ...+....
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~--~-----~~~~a~~~  136 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQ--E-----GRACAVVF  136 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHH--H-----HHHHHHHc
Confidence            1233 7899999999984332222 33444444432 1123499999999997544  211110  0     12233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      +.|+..+.+++++++.+...+..
T Consensus       137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence            43333      46888889999999999888754

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.67  E-value=2.6e-15  Score=116.85  Aligned_cols=163  Identities=17%  Similarity=0.110  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.+++.......    .+|...........++.  .+.+|||||...           +....
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence            68999999999999999999976642211    11221111111123333  578999999543           12222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC-----chHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~-----~~~~  170 (277)
                      ...+.++|++++|++++.+-+...  ..++..+.....   ..|+++|+||+|....  ......+.....     ...+
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~~  141 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR  141 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHHH
Confidence            234578899999999983322222  223344443322   2499999999997543  222111111000     1122


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+....+...+     ..+|++.+.++.++++.|...
T Consensus       142 ~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         142 DMANKIGAFGY-----MECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             HHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence            33333332112     256888889999999988754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.67  E-value=2e-15  Score=116.75  Aligned_cols=157  Identities=14%  Similarity=0.078  Sum_probs=90.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|||||||++.+++..  ....   .+|........ ...+..+.+|||||..           .+......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~-~~~~~~~~i~D~~G~~-----------~~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKL-RLDKYEVCIFDLGGGA-----------NFRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEE-EECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence            48999999999999999999762  2221   11221212222 2467789999999943           233333456


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +..+|++++|+|++..-+..+  ...++..+....  ...|++||+||.|....  ....+.... .  .+..+....+.
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-~--~l~~~~~~~~~  136 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEY-L--SLEKLVNENKS  136 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHh-c--CcccccCCCCc
Confidence            688899999999983322222  122333322211  23499999999997654  333333332 0  02222222233


Q ss_pred             eEEEEeCCCcccccCh------hHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGT------EQVRQLLSLVN  205 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~------~~~~~L~~~i~  205 (277)
                      .+..+    .+|+..+      .++.+.+++|.
T Consensus       137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence            33332    3456555      67888888874

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04135 Tc10 TC10 subfamily

Probab=99.67  E-value=5.5e-15  Score=114.93  Aligned_cols=163  Identities=18%  Similarity=0.115  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|++|+|||||++.+++.......    .+|...........++.  .+.+|||||.....           ...
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------RLR   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence            47999999999999999999976643221    12221111111223433  46799999965421           122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----C-CchHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~-~~~~~  170 (277)
                      ...+..+|++++|+++..+-+..+  ..++..+... ..  ..|+++|+||+|....  ......+...    . .....
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ  140 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence            234678899999999984323222  2344455443 22  2499999999997543  1111111100    0 01122


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+....+...+.     .+|++.+.|++++++.+...
T Consensus       141 ~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         141 KLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             HHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence            333344432222     56888899999999887654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.67  E-value=2.6e-15  Score=121.01  Aligned_cols=165  Identities=20%  Similarity=0.145  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCC-------------CCccee--eEE---------------------EEEe
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-------------SGVTKT--CEM---------------------KTTV   64 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-------------~~~t~~--~~~---------------------~~~~   64 (277)
                      +|+++|+.++|||||++.++...+ ..+...             .+.|..  ...                     ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            589999999999999999985332 111000             011110  000                     0112


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                      ...++.++++||||..+       ........+.  ...+|++++|+|+..+....+...+.++... +.    |+++|+
T Consensus        80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvv  145 (224)
T cd04165          80 EKSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVV  145 (224)
T ss_pred             eeCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEE
Confidence            24467899999999542       1222222221  1367999999999877888888888888764 43    899999


Q ss_pred             eCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEE--------------------EEeCCCcccccChhHHHHHHHHH
Q 023779          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV--------------------LFDNKTKDEAKGTEQVRQLLSLV  204 (277)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~s~~~~~~~~~L~~~i  204 (277)
                      ||+|....  ..+...+..     +..++...+..-.                    ...+....|+..+.|++.|...|
T Consensus       146 NK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L  218 (224)
T cd04165         146 TKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL  218 (224)
T ss_pred             ECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence            99998765  556555554     5555543222110                    11133355888889999999888


Q ss_pred             HHH
Q 023779          205 NSV  207 (277)
Q Consensus       205 ~~~  207 (277)
                      ..+
T Consensus       219 ~~l  221 (224)
T cd04165         219 NLL  221 (224)
T ss_pred             Hhc
Confidence            654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK09866 hypothetical protein; Provisional

Probab=99.67  E-value=2.8e-15  Score=133.24  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=77.3

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      .+++|+||||+.....  ..+.+.+...    ...+|++|||+|+....+..+..+++.+... ++.  .|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence            4689999999986432  1233334443    4567999999999866788888888877764 321  28999999999


Q ss_pred             CCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .........+.....     +...+.....   .+....+.|+..+.+++.|++.|..
T Consensus       301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence            864321122222221     2222222111   2333346688889999999998877

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.3e-15  Score=114.89  Aligned_cols=162  Identities=23%  Similarity=0.223  Sum_probs=104.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|.+|||||||+-.+....+.....+..+.......   ...++  ..+.+|||.|..           ++...
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tkt---v~~~~~~ikfeIWDTAGQE-----------Ry~sl   70 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKT---VTVDDNTIKFEIWDTAGQE-----------RYHSL   70 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEE---EEeCCcEEEEEEEEcCCcc-----------ccccc
Confidence            389999999999999999988755542222222221111111   11233  457799999933           44455


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+|+++++.|+|+|+++.-+... +.|+..|+...++++  -+.||+||+|+...-....++         .+.+.+.
T Consensus        71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~  139 (200)
T KOG0092|consen   71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAES  139 (200)
T ss_pred             ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHh
Confidence            5678999999999999993322222 566666666555432  344689999988631122221         3344444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .+..++      +.|++.+.|+.+|+..|...++..
T Consensus       140 ~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  140 QGLLFF------ETSAKTGENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             cCCEEE------EEecccccCHHHHHHHHHHhccCc
Confidence            444444      568899999999999999988753

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.66  E-value=6e-16  Score=113.70  Aligned_cols=141  Identities=21%  Similarity=0.269  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|||++|+|||||+++|.|.....      .-|....      +.+   .+|||||-+-.       ...+..++..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~------~~~---~~IDTPGEyiE-------~~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE------YYD---NTIDTPGEYIE-------NPRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE------ecc---cEEECChhhee-------CHHHHHHHHH
Confidence            689999999999999999999865411      1121111      111   36999995531       2345556655


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +...+|++++|.|++.+.+.--.    -+...|.    +|+|-|+||+|...+. ..++    .     .++++...|..
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP----~fa~~f~----~pvIGVITK~Dl~~~~-~~i~----~-----a~~~L~~aG~~  121 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPP----GFASMFN----KPVIGVITKIDLPSDD-ANIE----R-----AKKWLKNAGVK  121 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCc----hhhcccC----CCEEEEEECccCccch-hhHH----H-----HHHHHHHcCCC
Confidence            66788999999999833221111    1222343    3999999999977321 2332    2     44566666654


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      ..+     ..|+..+.++++|.++|.
T Consensus       122 ~if-----~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  122 EIF-----EVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CeE-----EEECCCCcCHHHHHHHHh
Confidence            332     446677899999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.66  E-value=4.2e-15  Score=118.10  Aligned_cols=158  Identities=20%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +|+++|++|+|||||++.+++..+... .   ..|. ...... ..+.+  ..+.+|||||...           +....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~---~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~-----------~~~~~   64 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y---RRTVEEMHRKE-YEVGGVSLTLDILDTSGSYS-----------FPAMR   64 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc-C---CCchhhheeEE-EEECCEEEEEEEEECCCchh-----------hhHHH
Confidence            589999999999999999997664221 1   1121 111111 22344  4688999999553           11222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh-h
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~  175 (277)
                      ..++..+|++++|+|++...+... ..++..+..... ....|++||+||+|..... ..+... .      ...... .
T Consensus        65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~  135 (198)
T cd04147          65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELD  135 (198)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhh
Confidence            234678899999999983322222 223333443322 1234999999999976421 111100 0      111111 1


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      ..|++.+.++.++++.+...+.
T Consensus       136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         136 WNCGFV------ETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence            122222      4588888999999999988764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.66  E-value=6e-15  Score=115.40  Aligned_cols=162  Identities=19%  Similarity=0.227  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|+|||||++.+++........    +|............+  ..+.+|||||...           +....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY----PTIENTFSKIIRYKGQDYHLEIVDTAGQDE-----------YSILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccC----cchhhhEEEEEEECCEEEEEEEEECCChHh-----------hHHHH
Confidence            689999999999999999999765422111    111111111112333  3478999999542           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++...+... ..++..+....+ ....|+++|+||+|....  ..+...       ....+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~  136 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW  136 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence            234557799999999983322222 222233333222 123489999999997543  111110       022233333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      +..++      +.|+..+.++.+++..+.+.+....
T Consensus       137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         137 GAAFL------ESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            33333      4577778899999999988776543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01892 Miro2 Miro2 subfamily

Probab=99.66  E-value=3.7e-15  Score=115.44  Aligned_cols=162  Identities=14%  Similarity=0.012  Sum_probs=93.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+++|.+|||||||++++++..+.... ...+.......... ..++  ..+.+|||+|....           ..
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~-----------~~   69 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTV-EVYGQEKYLILREVGEDEVA-----------IL   69 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEE-EECCeEEEEEEEecCCcccc-----------cc
Confidence            4589999999999999999999987653011 11111111221222 2344  35789999995432           11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....++.++|++++|+|++.+-+  ......++..... ....|+++|+||+|....  ...  ....     ..++...
T Consensus        70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~  137 (169)
T cd01892          70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRK  137 (169)
T ss_pred             cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHH
Confidence            12223578899999999973311  1122234433211 123499999999997543  111  0111     2233333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+...     ....|+..+.++.++++.+.+.+.
T Consensus       138 ~~~~~-----~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         138 LGLPP-----PLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             cCCCC-----CEEEEeccCccHHHHHHHHHHHhh
Confidence            33211     124577888899999999887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.66  E-value=2.4e-15  Score=139.51  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+|+|+.++|||||+++|.+..+...  ...+.|.....+.+. +++..++||||||+.++           ...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m  353 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAM  353 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhH
Confidence            3558899999999999999999987665322  223455555555444 56788999999997653           112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH---HH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE---IL  173 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~---~~  173 (277)
                      ....+..+|++++|+|+..+........+..+.. .+    .|++|++||+|....   ..+.....     +..   +.
T Consensus       354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a---~~e~V~~e-----L~~~~~~~  420 (787)
T PRK05306        354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGA---NPDRVKQE-----LSEYGLVP  420 (787)
T ss_pred             HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECcccccc---CHHHHHHH-----HHHhcccH
Confidence            2233456799999999986666666666555443 23    289999999997543   22222221     111   11


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      +..+..+.    ..+.|+..+.|+..|++.|..
T Consensus       421 e~~g~~vp----~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        421 EEWGGDTI----FVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             HHhCCCce----EEEEeCCCCCCchHHHHhhhh
Confidence            22222111    124688888999999998864

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.66  E-value=1.5e-14  Score=114.54  Aligned_cols=171  Identities=17%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee------CCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .+|+++|.+|||||||++.+++..+........+..  .....+...      ....+.+|||+|..           .+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~~   67 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------SV   67 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCch-----------hH
Confidence            379999999999999999999876533221111111  111111111      12358899999943           23


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-----------------cCccCcEEEEEeCCCCCCcccc
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDHEK  155 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~nk~D~~~~~~~  155 (277)
                      ......+++++|++++|+|++++-+... ..|+..+....+                 .....|++||.||.|+......
T Consensus        68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~  147 (202)
T cd04102          68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES  147 (202)
T ss_pred             HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence            3344456789999999999995544433 234444433211                 1112499999999997543001


Q ss_pred             cHHHHhcccCCchHHHHHhhcCCeEEEEeCCCccc-ccChhHHHHHHHHHHHHH
Q 023779          156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       156 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~L~~~i~~~~  208 (277)
                      .-...+..     ...+...++......+.....+ +....+-..|.....+.+
T Consensus       148 ~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~  196 (202)
T cd04102         148 SGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVI  196 (202)
T ss_pred             chHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHH
Confidence            11112222     3445566776666655442211 111234444544444444

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.66  E-value=3.4e-15  Score=125.70  Aligned_cols=166  Identities=22%  Similarity=0.158  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .-+.|+++|-+|+|||||+|+|++..++....-.  .|.+.........+++.+.+-||.||...-  +..+...|...+
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTL  266 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTL  266 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHH
Confidence            4478999999999999999999998876544222  222222222333458899999999998632  222333333333


Q ss_pred             hhcCCCccEEEEEEeCCCCCC-HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .. ...+|+++.|+|++.+.. ..-......+.++-..+  .|+++|+||+|.+.+  ......+.           ...
T Consensus       267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~-----------~~~  330 (411)
T COG2262         267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELE-----------RGS  330 (411)
T ss_pred             HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhh-----------hcC
Confidence            22 368899999999994422 22245556666652223  499999999998866  33111111           111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +       +....||..+.+++.|++.|...++.
T Consensus       331 ~-------~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         331 P-------NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             C-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            1       22345889999999999999998874

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.65  E-value=7.4e-15  Score=120.17  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|..|||||||++.+++..+.. ..   .+|.. .... ....++  ..+.||||+|...           +...
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y---~pTi~d~~~k-~~~i~~~~~~l~I~Dt~G~~~-----------~~~~   64 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QY---TPTIEDFHRK-LYSIRGEVYQLDILDTSGNHP-----------FPAM   64 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCC-CC---CCChhHhEEE-EEEECCEEEEEEEEECCCChh-----------hhHH
Confidence            379999999999999999998765422 11   11221 1111 112344  4578999999543           1122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-------cCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~  168 (277)
                      ...++..+|++++|+|++.+-+... ..++..+.....       .....|++||+||+|.........++         
T Consensus        65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------  135 (247)
T cd04143          65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------  135 (247)
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence            2224567899999999984333222 233444433210       11235999999999976421011111         


Q ss_pred             HHHHHhhc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++... +..++      +.|++.+.+++++++.|..+..
T Consensus       136 i~~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         136 VEQLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHhc
Confidence            22233221 12222      5688888999999999988653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd00876 Ras Ras family

Probab=99.65  E-value=7.8e-15  Score=112.20  Aligned_cols=156  Identities=19%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|++|||||||++++++... ....   ..+............  ...+.+||+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            589999999999999999997763 2221   112212122222233  24578999999543           222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..+...|++++|+|....-+..+ ..++..+..... ....|+++|+||+|.........+.         ...+....+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~  135 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEE---------GKALAKEWG  135 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHH---------HHHHHHHcC
Confidence            34456799999999983222222 233334444333 1234999999999977531111111         222333333


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..++      ..|+..+.++.++++.|.+.
T Consensus       136 ~~~~------~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         136 CPFI------ETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CcEE------EeccCCCCCHHHHHHHHHhh
Confidence            2332      45777788999999988653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.65  E-value=3.1e-15  Score=139.32  Aligned_cols=217  Identities=19%  Similarity=0.235  Sum_probs=122.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (277)
                      +..+.++|+|+|+.++|||||+|+|+.....  ..+.              ...+.|......... +++..+.+|||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG   84 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPG   84 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCC
Confidence            3456689999999999999999999732210  0000              012445555455444 7889999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~  158 (277)
                      +.+..       .+...+    +..+|++++|+|+..+....+...+..+... +    .|+++++||+|....   .+.
T Consensus        85 ~~~~~-------~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~---~~~  145 (689)
T TIGR00484        85 HVDFT-------VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA---NFL  145 (689)
T ss_pred             Ccchh-------HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC---CHH
Confidence            87632       122233    3455999999999876777777776665543 3    289999999997754   344


Q ss_pred             HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH---Hhh-cC----CCCCChHHHHHHHHHHHH
Q 023779          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV---IVQ-NG----GQPYTDELKRGATELRDK  230 (277)
Q Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~---~~~-~~----~~~~~~~~~~~~~~~~~~  230 (277)
                      ..+..     +...+   +...+...  .+.++..+  +..+++.+...   ... ..    ...++.++.+...++  +
T Consensus       146 ~~~~~-----i~~~l---~~~~~~~~--ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  211 (689)
T TIGR00484       146 RVVNQ-----IKQRL---GANAVPIQ--LPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKEL--R  211 (689)
T ss_pred             HHHHH-----HHHHh---CCCceeEE--eccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHH--H
Confidence            44443     33333   32221111  11222211  22222222110   000 00    011334444444444  5


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023779          231 KAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAE  265 (277)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (277)
                      .+.++.+.+.+++.++++.+......++..+.++.
T Consensus       212 ~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~  246 (689)
T TIGR00484       212 ENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRK  246 (689)
T ss_pred             HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            66667777888888888876544333444444443

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.65  E-value=4.4e-15  Score=136.68  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-e--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K--DGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ...++|+|+|++|+|||||+++|.+..+....  ..+.|.....+.... .  .+..++||||||+.           .+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence            35579999999999999999999876543221  123443333333221 1  34789999999953           23


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH--
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE--  171 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~--  171 (277)
                      ......++..+|++++|+|+..+........+..+.. .+    .|++|++||+|....   ........     +..  
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~---~~e~v~~e-----L~~~~  375 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANA---NTERIKQQ-----LAKYN  375 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCcccc---CHHHHHHH-----HHHhc
Confidence            3333334567799999999986666666666665543 22    399999999997643   22222221     111  


Q ss_pred             -HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          172 -ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                       +....+..+    .....||..+.++++|++.|..+.
T Consensus       376 ll~e~~g~~v----pvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        376 LIPEKWGGDT----PMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             cchHhhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence             111122111    112568888899999999887653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.1e-14  Score=110.04  Aligned_cols=162  Identities=16%  Similarity=0.146  Sum_probs=105.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      -+..+|+++|..+|||||||+..+-..+...    ...|.-  .....+ .+.++  .+.+|||.|           +++
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~----YqATIGiDFlskt~-~l~d~~vrLQlWDTAG-----------QER   83 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNT----YQATIGIDFLSKTM-YLEDRTVRLQLWDTAG-----------QER   83 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhccc----ccceeeeEEEEEEE-EEcCcEEEEEEEeccc-----------HHH
Confidence            3458999999999999999999985443222    223332  222222 23444  478999999           456


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      +...+..+++++.++++|+|++.+-+.+. ..|++-+..-.|.+. .-+++|+||.|+..+  ..+..  .+     -..
T Consensus        84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~--eE-----g~~  153 (221)
T KOG0094|consen   84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSI--EE-----GER  153 (221)
T ss_pred             HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhH--HH-----HHH
Confidence            77777888999999999999995555444 455555554444421 256788999998865  22211  10     111


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .....+.-|.      ..|++.+.++..|+.+|...++.
T Consensus       154 kAkel~a~f~------etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  154 KAKELNAEFI------ETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             HHHHhCcEEE------EecccCCCCHHHHHHHHHHhccC
Confidence            1223333222      56888899999999999888765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.64  E-value=2.3e-14  Score=116.33  Aligned_cols=87  Identities=22%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++|+|||||+|+|+|.... .+. ....|..... ....+.+..+.+|||||+.+.......    +...+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~-~~~tT~~~~~-g~~~~~~~~i~l~DtpG~~~~~~~~~~----~~~~~l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE-VAA-YEFTTLTCVP-GVLEYKGAKIQLLDLPGIIEGAADGKG----RGRQVIAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc-ccC-CCCccccceE-EEEEECCeEEEEEECCCcccccccchh----HHHHHHHh
Confidence            6899999999999999999987642 221 1223333322 223367888999999998754321111    22222334


Q ss_pred             CCCccEEEEEEeCC
Q 023779          101 KDGIHAFLVVFSVT  114 (277)
Q Consensus       101 ~~~~~~~l~v~d~~  114 (277)
                      ++.+|++++|+|++
T Consensus        75 ~~~ad~il~V~D~t   88 (233)
T cd01896          75 ARTADLILMVLDAT   88 (233)
T ss_pred             hccCCEEEEEecCC
Confidence            67889999999987

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04177 RSR1 RSR1 subgroup

Probab=99.64  E-value=8.9e-15  Score=113.16  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|+|||||++++++.......    .+|...........++  ..+.+|||||....           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence            57999999999999999999976642221    1122111111111333  45789999996542           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..++++++|++++.+-+... ..+...+..... ....|+++++||.|.........++         ...+....
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~  136 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW  136 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence            334567799999999983322222 233344444332 1234999999999975431011111         12222333


Q ss_pred             C-CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      + ..++      ..||+.+.++.++++.+...
T Consensus       137 ~~~~~~------~~SA~~~~~i~~~f~~i~~~  162 (168)
T cd04177         137 GNVPFY------ETSARKRTNVDEVFIDLVRQ  162 (168)
T ss_pred             CCceEE------EeeCCCCCCHHHHHHHHHHH
Confidence            3 2222      46888889999999988754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.64  E-value=4.2e-15  Score=115.56  Aligned_cols=161  Identities=19%  Similarity=0.135  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|++|+|||||++++++..+...    ..+|....+......++  ..+.+|||||...           +....
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE----YVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLR   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hcccc
Confidence            4799999999999999999986554221    12222111111122333  3578999999542           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC----CchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~----~~~~~~  171 (277)
                      ..++.++|++++|+|++.+-+...  ..++..+.... .+  .|+++|+||+|..... ..+..+.....    ......
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PK--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA  141 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence            335678999999999984433322  23444454432 22  4999999999976431 11111111100    001223


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      +....+. .++      ++|++.+.++.++++.+.
T Consensus       142 ~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         142 LAEKIGACEYI------ECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence            3333333 333      568888899999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.64  E-value=6.4e-13  Score=110.56  Aligned_cols=150  Identities=25%  Similarity=0.394  Sum_probs=99.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccc----c--CCCCCcceeeEEEEEee-eCCc--eEEEEeCCCCCCCCCCc---
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----S--AGSSGVTKTCEMKTTVL-KDGQ--VVNVIDTPGLFDLSAGS---   86 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~----~--~~~~~~t~~~~~~~~~~-~~~~--~~~liDtpG~~~~~~~~---   86 (277)
                      ..+|+++|++|.|||||+|+|++......    +  ......+.......... .++.  .++++|||||+|.....   
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w  102 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW  102 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence            47999999999999999999998743221    0  11122333343333222 2232  48899999999876432   


Q ss_pred             h----HHHHHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           87 E----FVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        87 ~----~~~~~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      +    .+..++..++..          ...++|++||.+..+ ++++..|...++.+.+.+      ++|=|+.|.|.+.
T Consensus       103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~lT  176 (373)
T COG5019         103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------CeeeeeeccccCC
Confidence            1    233344444421          125689999999977 688888888777766642      8999999999998


Q ss_pred             cccccHHHHhcccCCchHHHHHhhcCCeEE
Q 023779          152 DHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (277)
Q Consensus       152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  181 (277)
                      .  ..+..+...     +.+.+..+..+++
T Consensus       177 ~--~El~~~K~~-----I~~~i~~~nI~vf  199 (373)
T COG5019         177 D--DELAEFKER-----IREDLEQYNIPVF  199 (373)
T ss_pred             H--HHHHHHHHH-----HHHHHHHhCCcee
Confidence            8  777776665     6666665554444

>PRK12735 elongation factor Tu; Reviewed

Probab=99.64  E-value=1.5e-14  Score=126.53  Aligned_cols=166  Identities=17%  Similarity=0.217  Sum_probs=101.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+.++|+++|+.++|||||+++|++...      +.    .    .....+.|......... .++..+.|+||||+.  
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~--   86 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA--   86 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH--
Confidence            4559999999999999999999986210      00    0    01123455554444333 466789999999953  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EEEEeCCCCCCcccccHHHHh
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~nk~D~~~~~~~~l~~~l  161 (277)
                               ++...+......+|++++|+|+..+....+...+..+.. .+.    |. ++++||+|....  ..+.+.+
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~  150 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV  150 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHH
Confidence                     333444444567899999999986566666666666554 343    54 467999998644  2332222


Q ss_pred             cccCCchHHHHHhhcCC---eEEEEeCCCcccccCh----------hHHHHHHHHHHHHHh
Q 023779          162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV  209 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~----------~~~~~L~~~i~~~~~  209 (277)
                      ..    .+..++..++.   .+..+    +.|+..+          .++..|++.|...++
T Consensus       151 ~~----ei~~~l~~~~~~~~~~~ii----~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        151 EM----EVRELLSKYDFPGDDTPII----RGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HH----HHHHHHHHcCCCcCceeEE----ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            21    15556655542   12222    2233332          256788888887654

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.63  E-value=6.9e-15  Score=116.56  Aligned_cols=151  Identities=15%  Similarity=0.048  Sum_probs=92.8

Q ss_pred             EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEE-eeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779           25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (277)
Q Consensus        25 vG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (277)
                      +|..|||||||+++++...+. ..   ..+|........ ...+  ...+.||||||..           .+......++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence            699999999999999865432 11   122322222111 1123  3468899999943           3334444567


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       102 ~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      .++|++++|+|++.+.+... ..++..+.... ..  .|++||+||+|....  ....+         ...+....+..+
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~~--~v~~~---------~~~~~~~~~~~~  131 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-EN--IPIVLCGNKVDVKDR--KVKAK---------SITFHRKKNLQY  131 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CC--CCEEEEEECcccccc--cCCHH---------HHHHHHHcCCEE
Confidence            88999999999995444333 24455555543 23  399999999996433  11111         112222323333


Q ss_pred             EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +      ++||+.+.++.+++.++.+.+..
T Consensus       132 ~------e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      132 Y------DISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            2      56888899999999999887654

Ran is involved in the active transport of proteins through nuclear pores.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.63  E-value=2e-14  Score=109.35  Aligned_cols=154  Identities=19%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||+|.|++... .... ..+.+........ ..++  ..+.+|||||..+.           ....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~-----------~~~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVI-EEDGKTYKFNLLDTAGQEDY-----------RAIR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEE-EECCEEEEEEEEECCCcccc-----------hHHH
Confidence            6899999999999999999998773 3221 1222222222222 2455  66889999995432           1111


Q ss_pred             hhcCCCccEEEEEEeCCCC-CC--HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           98 GMAKDGIHAFLVVFSVTNR-FS--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ......++.+++++|.... .+  .........+......  ..|+++++||+|....  . +...        ....+.
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~  134 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA  134 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence            1122344666666666522 11  1112333334333322  3499999999998754  2 1111        222223


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      ..+...     ..+.|+..+.++.++++.|.
T Consensus       135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       135 KLNGEP-----IIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence            222211     22557777889999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.63  E-value=5.6e-15  Score=106.42  Aligned_cols=158  Identities=17%  Similarity=0.217  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+.+|+|++|+|||||+-.+....+  ++.......++..+.... .+|.  .+.||||.|           .+.+...+
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAG-----------qErFrtit   74 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAG-----------QERFRTIT   74 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEee-cCCcEEEEEEeeccc-----------HHHHHHHH
Confidence            4578999999999999998876554  232222222333333222 3343  488999999           45677777


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+++++|++++|+|+++.-+... ++|++.++..+..   .|-++|.||.|..+.  ..+...       ..+.+....
T Consensus        75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R--rvV~t~-------dAr~~A~~m  142 (198)
T KOG0079|consen   75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER--RVVDTE-------DARAFALQM  142 (198)
T ss_pred             HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc--eeeehH-------HHHHHHHhc
Confidence            788999999999999995444444 6777777776653   389999999997765  222211       133343333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +...+      +.|++...+++..+..|.+.+-
T Consensus       143 gie~F------ETSaKe~~NvE~mF~cit~qvl  169 (198)
T KOG0079|consen  143 GIELF------ETSAKENENVEAMFHCITKQVL  169 (198)
T ss_pred             Cchhe------ehhhhhcccchHHHHHHHHHHH
Confidence            43333      5688888999999988877653

>CHL00071 tufA elongation factor Tu

Probab=99.62  E-value=2.2e-14  Score=125.98  Aligned_cols=137  Identities=17%  Similarity=0.245  Sum_probs=89.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+.++|+++|++++|||||+|+|++......+              ....+.|......... .++..+.|+||||+.  
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~--   86 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA--   86 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH--
Confidence            45599999999999999999999964211000              0113444444333332 466789999999943  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                               .+...+......+|++++|+|+..++...+...+..+... +.    | +++++||+|....  ..+.+.+
T Consensus        87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~~  150 (409)
T CHL00071         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLELV  150 (409)
T ss_pred             ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHHH
Confidence                     2333333344577999999999877777777777776653 43    5 7789999998754  3332322


Q ss_pred             -cccCCchHHHHHhhcC
Q 023779          162 -GHECPKPLKEILQLCD  177 (277)
Q Consensus       162 -~~~~~~~~~~~~~~~~  177 (277)
                       .+     +..++..++
T Consensus       151 ~~~-----l~~~l~~~~  162 (409)
T CHL00071        151 ELE-----VRELLSKYD  162 (409)
T ss_pred             HHH-----HHHHHHHhC
Confidence             23     666666554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.62  E-value=9e-15  Score=129.33  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccC---------------CCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------GSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~~~   68 (277)
                      +.++|+++|+.++|||||+++|+.....-              .|.               -..+.|.......+. +++
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~~   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TDK   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cCC
Confidence            45899999999999999999998432110              010               024566666555444 577


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      ..+.||||||..+           +...+......+|++++|+|+..  .+...+...+.++.. ++.   .|++|++||
T Consensus        84 ~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviNK  148 (425)
T PRK12317         84 YYFTIVDCPGHRD-----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAINK  148 (425)
T ss_pred             eEEEEEECCCccc-----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEEc
Confidence            8899999999643           11222223457899999999985  555555555555543 342   279999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  199 (277)
                      +|........+......     +..++...+..... ....+.|+..+.++.+
T Consensus       149 ~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~-~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        149 MDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDD-IPFIPVSAFEGDNVVK  195 (425)
T ss_pred             cccccccHHHHHHHHHH-----HHHHHHhhCCCcCc-ceEEEeecccCCCccc
Confidence            99764211233333333     55555554421000 0112346666666654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.62  E-value=3.5e-14  Score=124.02  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+.++|+++|+.++|||||+++|++.....              ......+.|......... .++..+.+|||||..  
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~--   86 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA--   86 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH--
Confidence            345899999999999999999998632100              000123455555444332 456789999999943  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                               ++..........+|++++|+|+..+....+...+.++... +.    | ++|++||+|....  ..+.+.+
T Consensus        87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i  150 (394)
T PRK12736         87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV  150 (394)
T ss_pred             ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence                     2223333334577999999999877777777777776654 43    5 6789999998644  3333322


Q ss_pred             cccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh--------hHHHHHHHHHHHHHh
Q 023779          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV  209 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~--------~~~~~L~~~i~~~~~  209 (277)
                      ..    .+..++...+.     .++.      .|+..+        .++..|++.+...++
T Consensus       151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            21    15566655542     2333      333332        357888888888765

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.61  E-value=4e-14  Score=113.99  Aligned_cols=162  Identities=15%  Similarity=0.042  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE--Ee-eeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV-LKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      +.....+|+++|++|||||||++.++........    .+|.......  .. ......+.+|||||...          
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------   70 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------   70 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence            3445589999999999999999765433322111    1222221211  11 11234688999999432          


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                       +......++...+++++|+|++.+.+... ..++..+.... ..  .|+++++||+|....  .....         ..
T Consensus        71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~~~--~~~~~---------~~  135 (215)
T PTZ00132         71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVKDR--QVKAR---------QI  135 (215)
T ss_pred             -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCccc--cCCHH---------HH
Confidence             12222334567799999999984443333 23334444332 22  389999999996533  11111         11


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .+....+..++      +.|++.+.++++++..|.+.+..+
T Consensus       136 ~~~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        136 TFHRKKNLQYY------DISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhc
Confidence            22233333333      457777888999998888777553

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.4e-14  Score=103.35  Aligned_cols=156  Identities=18%  Similarity=0.253  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|..|+|||.|+..++..- |+.|.+.. ..+..-...+. .++.  .+.+|||.|           .+++....
T Consensus         8 fkivlvgnagvgktclvrrftqgl-fppgqgat-igvdfmiktve-v~gekiklqiwdtag-----------qerfrsit   73 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGAT-IGVDFMIKTVE-VNGEKIKLQIWDTAG-----------QERFRSIT   73 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccC-CCCCCCce-eeeeEEEEEEE-ECCeEEEEEEeeccc-----------hHHHHHHH
Confidence            689999999999999999988554 33332211 11222222222 3443  588999999           34566666


Q ss_pred             hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+|+.+|++++|+|++ ++--.--..|+..+.+.....+  -.|+|.||.|....  ..+...+..       ++-+. 
T Consensus        74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige-------efs~~-  141 (213)
T KOG0095|consen   74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE-------EFSEA-  141 (213)
T ss_pred             HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH-------HHHHh-
Confidence            67889999999999998 2211223456666766654433  46788999997755  333322221       11111 


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ...|+.     +.|++...+++.|+..+.-
T Consensus       142 qdmyfl-----etsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen  142 QDMYFL-----ETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             hhhhhh-----hhcccchhhHHHHHHHHHH
Confidence            233443     5678888999998876644

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=5.1e-15  Score=115.21  Aligned_cols=161  Identities=15%  Similarity=0.127  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|..||||||+++.|.......     ..+|.......+. +.+..+.+||.+|-.           .+...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence            456899999999999999999998654322     2334444444433 678899999999932           23344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|+++||+|.+.. .... ...+.+..++...  ...|++|+.||.|....  ...+++... ..  +..+ .
T Consensus        75 w~~y~~~~~~iIfVvDssd~-~~l~-e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~-l~--l~~l-~  146 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDP-ERLQ-EAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEY-LG--LEKL-K  146 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGG-GGHH-HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHH-TT--GGGT-T
T ss_pred             ceeeccccceeEEEEecccc-eeec-ccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhh-hh--hhhc-c
Confidence            45567889999999999822 1111 1222333333321  22499999999997654  333332221 00  1111 1


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                       ...++..+    .+++..+.|+.+.+++|.+.
T Consensus       147 -~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  147 -NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             -SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred             -cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence             12344443    45777889999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04129 Rho2 Rho2 subfamily

Probab=99.61  E-value=2.3e-14  Score=112.84  Aligned_cols=165  Identities=17%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|+|||||++.++........    ..|....+.......+  ..+.+|||||.....           ...
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE-----------RLR   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEECCEEEEEEEEECCCChhcc-----------ccc
Confidence            58999999999999999999854432211    1222222221112333  347899999964321           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC--chHHHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP--KPLKEIL  173 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~--~~~~~~~  173 (277)
                      ...+..+|+++++++++..-+...  ..++..+..... +  .|+++|+||+|..... ...+........  .....+.
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  142 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA  142 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence            123567899999999983322222  235555555433 2  4999999999964320 111110000000  0122233


Q ss_pred             hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+. .++      .+|++.+.+++++++.+.+...
T Consensus       143 ~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         143 KEIGAKKYM------ECSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             HHhCCcEEE------EccCCCCCCHHHHHHHHHHHHh
Confidence            33332 232      5688899999999999987653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.61  E-value=2.7e-14  Score=104.39  Aligned_cols=118  Identities=18%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ..++|++||.+|+|||||+-+++...+ +.. .+....++..+.... .++  ..+.+|||.|           ++++..
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-d~~-~~~tIGvDFkvk~m~-vdg~~~KlaiWDTAG-----------qErFRt   75 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTF-DDL-HPTTIGVDFKVKVMQ-VDGKRLKLAIWDTAG-----------QERFRT   75 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhccc-Ccc-CCceeeeeEEEEEEE-EcCceEEEEEEeccc-----------hHhhhc
Confidence            458999999999999999999885543 322 122223334333333 343  4588999999           446677


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ....+|+++.++++|+|++.+-+.... .|++.+... ..+..--.|+|.||+|..
T Consensus        76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y-stn~diikmlVgNKiDke  130 (209)
T KOG0080|consen   76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY-STNPDIIKMLVGNKIDKE  130 (209)
T ss_pred             cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh-cCCccHhHhhhcccccch
Confidence            777889999999999999954443332 333333332 222212356889999965

>PLN03127 Elongation factor Tu; Provisional

Probab=99.60  E-value=2.5e-14  Score=126.16  Aligned_cols=169  Identities=15%  Similarity=0.187  Sum_probs=102.9

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCC------CC-cc---c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGR------KA-FK---A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~------~~-~~---~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      ...+.++|+++|+.++|||||+++|++.      .. +.   .    .....+.|......... .++.++.++||||+.
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~  135 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHA  135 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCcc
Confidence            3456689999999999999999999732      10 00   0    01114556665555443 466789999999975


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~  159 (277)
                      +       ....+..    ....+|++++|+|+..+....+...+.++... +.    | +++++||+|....  ..+.+
T Consensus       136 ~-------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~  197 (447)
T PLN03127        136 D-------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLE  197 (447)
T ss_pred             c-------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHH
Confidence            4       1122222    22357999999999867777777777777654 43    5 5788999998754  33333


Q ss_pred             HhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh-------hHHHHHHHHHHHHHh
Q 023779          160 FLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT-------EQVRQLLSLVNSVIV  209 (277)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~-------~~~~~L~~~i~~~~~  209 (277)
                      .+..    .+.+++..++.     .++..+.   .++..+       ..+..|++.+...++
T Consensus       198 ~i~~----~i~~~l~~~~~~~~~vpiip~Sa---~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        198 LVEM----ELRELLSFYKFPGDEIPIIRGSA---LSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHH----HHHHHHHHhCCCCCcceEEEecc---ceeecCCCcccccchHHHHHHHHHHhCC
Confidence            3321    15555554332     2222111   111111       347788888887765

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.60  E-value=2.7e-14  Score=109.25  Aligned_cols=152  Identities=19%  Similarity=0.137  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++.++...+... ..+   +...... ....++  ..+.+|||+|...            .   
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~-~i~~~~~~~~l~i~D~~g~~~------------~---   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKK-EVLVDGQSHLLLIRDEGGAPD------------A---   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEE-EEEECCEEEEEEEEECCCCCc------------h---
Confidence            3799999999999999998876543221 111   1111111 223455  3488999999642            0   


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                       .++.++|++++|+|++.+-+... ..++..+..... ....|+++|.||.|........+....       ...+....
T Consensus        61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~  131 (158)
T cd04103          61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM  131 (158)
T ss_pred             -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence             12356799999999995544444 345555555432 122499999999986421001111110       12233332


Q ss_pred             C-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      + ..++      ++||+.+.++++++..+.+
T Consensus       132 ~~~~~~------e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         132 KRCSYY------ETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             CCCcEE------EEecCCCCCHHHHHHHHHh
Confidence            2 2232      5688899999999988764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.60  E-value=8.7e-15  Score=112.39  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+++|+.|||||||++.+.+..+........+  ........ ..++.  .+.+||++|...           +.....
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~l~i~D~~g~~~-----------~~~~~~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEV-SIDGKPVNLEIWDTSGQER-----------FDSLRD   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEE-EETTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccc--cccccccc-ccccccccccccccccccc-----------cccccc
Confidence            689999999999999999997664322211111  12222222 23343  488999999432           112222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..+..+|++++|+|++.+-+... ..++..+......+  .|++||.||.|.........++         .+.+....+
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~  135 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE---------AQEFAKELG  135 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhhH---------HHHHHHHhC
Confidence            34567899999999983322222 35555556555423  3999999999976531011111         344555656


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..|+      ..|++.+.++.+++..+.+.+
T Consensus       136 ~~~~------e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  136 VPYF------EVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             SEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred             CEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            5555      456677788999888776654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.60  E-value=2.3e-14  Score=118.86  Aligned_cols=154  Identities=23%  Similarity=0.331  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEEee-eCC--ceEEEEeCCCCCCCCCCch---
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSE---   87 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~---   87 (277)
                      ++|+|+|.+|+|||||||+|++.........      ....+.......... .++  ..++|+|||||++......   
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~   84 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE   84 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence            7899999999999999999998776444210      111222222222221 223  3588999999997654321   


Q ss_pred             ----HHHHHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           88 ----FVGKEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        88 ----~~~~~~~~~~~~---------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                          .+..++...+..         ...++|++||+++.+ .++...|...++.|...    +  |+|-|+.|.|.+.. 
T Consensus        85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~-  157 (281)
T PF00735_consen   85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP-  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H-
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH-
Confidence                122233333321         124689999999987 57888888777766653    2  89999999999988 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
                       ..+..+...     +..-+...+.+++.|...
T Consensus       158 -~el~~~k~~-----i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  158 -EELQAFKQR-----IREDLEENNIKIFDFPED  184 (281)
T ss_dssp             -HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred             -HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence             778777766     777777777776665544

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK00007 elongation factor G; Reviewed

Probab=99.60  E-value=3.2e-14  Score=132.52  Aligned_cols=119  Identities=23%  Similarity=0.296  Sum_probs=84.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh---CCCCcccc-C-------------CCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~---~~~~~~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (277)
                      ..+.++|+|+|+.++|||||+|+|+   |... ..+ .             ...+.|......... +.+..+.|+||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCC
Confidence            4456899999999999999999996   3211 010 0             123455555444443 7889999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      +.++       ..++..++    ..+|++++|+|+..+.+..+...+..+... +.    |+++++||+|....
T Consensus        85 ~~~f-------~~ev~~al----~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~  142 (693)
T PRK00007         85 HVDF-------TIEVERSL----RVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA  142 (693)
T ss_pred             cHHH-------HHHHHHHH----HHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            7541       12334443    445999999999878888888888877764 33    78999999997754

>PRK12739 elongation factor G; Reviewed

Probab=99.60  E-value=5.5e-14  Score=130.99  Aligned_cols=128  Identities=22%  Similarity=0.279  Sum_probs=87.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ..+.++|+|+|+.++|||||+++|+.....  ..+.              ...+.|......... +++..+.+|||||+
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~   83 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGH   83 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCH
Confidence            345689999999999999999999732110  0000              123455555555444 78899999999996


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~  159 (277)
                      .+       ...+...    +...+|++++|+|+..+....+...+..+... +.    |+++++||+|....   .+..
T Consensus        84 ~~-------f~~e~~~----al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~---~~~~  144 (691)
T PRK12739         84 VD-------FTIEVER----SLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA---DFFR  144 (691)
T ss_pred             HH-------HHHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHH
Confidence            53       1223333    34455999999999877777777777776653 32    89999999998754   3444


Q ss_pred             Hhcc
Q 023779          160 FLGH  163 (277)
Q Consensus       160 ~l~~  163 (277)
                      .+..
T Consensus       145 ~~~~  148 (691)
T PRK12739        145 SVEQ  148 (691)
T ss_pred             HHHH
Confidence            4444

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.7e-14  Score=109.36  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +.-.+|+++|++|+|||-|+..++...+...  +..+.-+........ .+++  ...||||.|           ++++.
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~--SksTIGvef~t~t~~-vd~k~vkaqIWDTAG-----------QERyr   77 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRTVN-VDGKTVKAQIWDTAG-----------QERYR   77 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcc--cccceeEEEEeecee-ecCcEEEEeeecccc-----------hhhhc
Confidence            4457899999999999999999987665222  222222222222222 3444  468999999           33455


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      ....++|+++.+.++|+|++.+.+... .+|+..|+.+..+.+  ++|+|.||+|+..
T Consensus        78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~  133 (222)
T KOG0087|consen   78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH  133 (222)
T ss_pred             cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence            555677899999999999985555544 577777777765554  8999999999654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.59  E-value=4.6e-14  Score=128.37  Aligned_cols=167  Identities=14%  Similarity=0.247  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-Cc-ccc------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRK-AF-KAS------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~-~~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (277)
                      ++|+++|+.++|||||+++|+... .+ ..+            ....+.|.......+. |.+..+.||||||+.++   
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF---   77 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADF---   77 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHH---
Confidence            679999999999999999998421 11 111            0112455555545444 78899999999996542   


Q ss_pred             chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (277)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~  165 (277)
                          ..++..    ++..+|++++|+|+..+.......++..+... +.    |++|++||+|....   .....+..  
T Consensus        78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e--  139 (594)
T TIGR01394        78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE--  139 (594)
T ss_pred             ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence                223333    34566999999999866666667777766653 32    88999999997533   23333333  


Q ss_pred             CchHHHHHhhcCCeEEEE-eCCCcccccCh----------hHHHHHHHHHHHHHhhc
Q 023779          166 PKPLKEILQLCDNRCVLF-DNKTKDEAKGT----------EQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~----------~~~~~L~~~i~~~~~~~  211 (277)
                         +..++..++...-.+ ......|+..+          .++..|++.|...++..
T Consensus       140 ---i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       140 ---VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             ---HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence               333333222110000 01112344444          36889999988887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.59  E-value=7.2e-14  Score=110.48  Aligned_cols=161  Identities=14%  Similarity=0.039  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHH-HHhCCCCcccc--CCCCCccee---eEEEE-------EeeeCC--ceEEEEeCCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT---CEMKT-------TVLKDG--QVVNVIDTPGLFDLSA   84 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin-~l~~~~~~~~~--~~~~~~t~~---~~~~~-------~~~~~~--~~~~liDtpG~~~~~~   84 (277)
                      .+|+++|..|||||||+. .+.+..+ ..+  .....+|..   .....       ....++  ..+.||||+|...   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---   78 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---   78 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh---
Confidence            789999999999999996 5544322 111  111122321   10000       001233  4588999999542   


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-----
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-----  157 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-----  157 (277)
                             .+   ...+++++|++++|+|++.+.+....  .++..+.... .+  .|+++|.||+|.........     
T Consensus        79 -------~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          79 -------KD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PR--VPVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             -------hh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CC--CCEEEEEEchhccccccchhhhccc
Confidence                   11   12367899999999999855444433  3555565543 23  39999999999643100000     


Q ss_pred             --------HHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          158 --------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       158 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                              ...+.   ....+.+....+..|+      ++||+.+.+++++++.+.+
T Consensus       146 ~~~~~~~~~~~V~---~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         146 PLARPIKNADILP---PETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccccccCCccC---HHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence                    00000   1123445555555443      6788899999999988765

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.59  E-value=2.9e-14  Score=125.04  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEe--------------e-----------eCCceE
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV--------------L-----------KDGQVV   71 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~   71 (277)
                      +..+|+++|+.++|||||+++|++....... ....+.|....+....              .           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            3489999999999999999999874321100 1111222222211100              0           024679


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      .+|||||..           ++...+......+|++++|+|++.+. .......+..+.. ++.   +|+++++||+|..
T Consensus        83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence            999999943           22223333334679999999998554 4445555555533 332   2799999999987


Q ss_pred             CcccccHHHHhcccCCchHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          151 EDHEKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..  .........     +..++.... ..+    ...+.|+..+.+++.|++.|...++.
T Consensus       148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~----~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       148 SK--EKALENYEE-----IKEFVKGTVAENA----PIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             CH--HHHHHHHHH-----HHhhhhhcccCCC----eEEEEECCCCCChHHHHHHHHHhCCC
Confidence            54  222222222     333333211 011    11255788889999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.58  E-value=8.3e-14  Score=121.70  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+.++|+++|+.++|||||+++|++......              .....+.|......... .++..+.++||||+.  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~--   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence            4558999999999999999999986311000              00123445554433332 466789999999953  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE-EEEeCCCCCCcccccH-HHH
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTL-EDF  160 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i-vv~nk~D~~~~~~~~l-~~~  160 (277)
                               ++...+......+|++++|+|+..+....+...+..+... +.    |.+ +++||+|....  ... +..
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~  150 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELV  150 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHH
Confidence                     3444444455788999999999867777777777776653 43    665 68999998743  222 222


Q ss_pred             hcccCCchHHHHHhhcCC-----eEEEEeCCCcc--c--ccChhHHHHHHHHHHHHHh
Q 023779          161 LGHECPKPLKEILQLCDN-----RCVLFDNKTKD--E--AKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       161 l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--s--~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...     +..++..++.     .++........  +  ..-..++..|++.|...++
T Consensus       151 ~~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        151 EME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            223     5566655442     23332221100  0  0001246788888887654

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=1.6e-13  Score=103.01  Aligned_cols=159  Identities=15%  Similarity=0.135  Sum_probs=101.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+++++|++|||||.|+...+...+.+...  .+..+....... ..+++  .+.+|||.|..           .+...
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~-~id~k~IKlqiwDtaGqe-----------~frsv   71 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMV-TIDGKQIKLQIWDTAGQE-----------SFRSV   71 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEE-EEcCceEEEEEEecCCcH-----------HHHHH
Confidence            3889999999999999999999776533222  222223333322 24544  48899999933           45566


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+|+++.+.|+|+|++.+-+..- ..||.-++....++.  -++|+.||+|....  ..+...       .-+.+.+.
T Consensus        72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~E-------EGeaFA~e  140 (216)
T KOG0098|consen   72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSKE-------EGEAFARE  140 (216)
T ss_pred             HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccHH-------HHHHHHHH
Confidence            6678999999999999994433332 355566666543433  67788999997755  222111       12233333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                       +.-.+.     +.|++...++++.+.-+...+
T Consensus       141 -hgLifm-----ETSakt~~~VEEaF~nta~~I  167 (216)
T KOG0098|consen  141 -HGLIFM-----ETSAKTAENVEEAFINTAKEI  167 (216)
T ss_pred             -cCceee-----hhhhhhhhhHHHHHHHHHHHH
Confidence             222222     668888999998887665544

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.57  E-value=5.2e-14  Score=127.50  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=74.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-----------------CCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~   81 (277)
                      ...|+++|++++|||||+|+|++..+....  +.+.|.+.........                 ....+.||||||...
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            367999999999999999999987653221  1222222222111100                 012388999999543


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                                 +......++..+|++++|+|++.++...+...+.++... +    .|+++++||+|...
T Consensus        82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVVAANKIDRIP  135 (590)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence                       222223345678999999999866666666666665542 2    38999999999763

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.57  E-value=1e-13  Score=126.40  Aligned_cols=163  Identities=18%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC------ccccC-------CCCCcceeeEEEEEeee--CC--ceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASA-------GSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~~--~~~~liDtpG~~~   81 (277)
                      .++|+++|+.++|||||+++|+....      +....       ...+.|...........  ++  ..+.||||||..+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            47899999999999999999985321      00000       01244444333333211  22  5689999999765


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                      +       ...+..    ++..+|++++|+|++.+.+..+...+..+.. .  +  .|+++|+||+|....   ......
T Consensus        83 F-------~~~v~~----~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~--~--ipiIiViNKiDl~~~---~~~~~~  143 (595)
T TIGR01393        83 F-------SYEVSR----SLAACEGALLLVDAAQGIEAQTLANVYLALE-N--D--LEIIPVINKIDLPSA---DPERVK  143 (595)
T ss_pred             H-------HHHHHH----HHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c--C--CCEEEEEECcCCCcc---CHHHHH
Confidence            2       122333    3456699999999986666666544443332 1  2  289999999996533   222222


Q ss_pred             cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..     +...+   +...   ......|++.+.|+.+|++.|...++..
T Consensus       144 ~e-----l~~~l---g~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       144 KE-----IEEVI---GLDA---SEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HH-----HHHHh---CCCc---ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            22     33222   2110   0123568889999999999998887653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.56  E-value=1.2e-13  Score=103.93  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      ++|++|+|||||+|+|++........   ..|. ........   ..+..+.+|||||....           .......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence            58999999999999999876521211   1121 11111111   12567899999996541           1111334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      .+.+|++++|+|++...+..+...+  ..+...  .....|+++++||+|....  ....... .     ..........
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~  135 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGV  135 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCC
Confidence            5678999999999843333333222  111111  1223599999999997755  2222111 0     1112222333


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      .++.      .|+..+.++.+++++|.
T Consensus       136 ~~~~------~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         136 PYFE------TSAKTGENVEELFEELA  156 (157)
T ss_pred             cEEE------EecCCCCChHHHHHHHh
Confidence            4443      35555677888887764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.56  E-value=1e-13  Score=122.55  Aligned_cols=160  Identities=17%  Similarity=0.175  Sum_probs=93.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--cc------------cc---------------CCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--FK------------AS---------------AGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~~------------~~---------------~~~~~~t~~~~~~~~~~~~~   68 (277)
                      +.++|+++|+.++|||||+++|+...-  ..            .|               ....+.|.......+. +++
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~~   84 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TDK   84 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cCC
Confidence            458999999999999999999984211  00            00               0112455555554443 567


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      ..+.||||||..           .+...+...+..+|++++|+|++.+   ........+..+ ..++.   .|++|++|
T Consensus        85 ~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVviN  149 (426)
T TIGR00483        85 YEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAIN  149 (426)
T ss_pred             eEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEEE
Confidence            789999999943           2333333345678999999999854   222223322333 23342   37999999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  199 (277)
                      |+|........+......     ++.++...+.... .....+.|++.+.++.+
T Consensus       150 K~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       150 KMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence            999864211334444443     6666665542100 00112456666666654

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.56  E-value=8.5e-14  Score=122.05  Aligned_cols=169  Identities=12%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEee-----------------e---C-----Cce
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-----------------K---D-----GQV   70 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-----------------~---~-----~~~   70 (277)
                      .+..+|+++|+.++|||||+.+|++..... ......+.|..........                 .   .     ...
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            345899999999999999999997642110 0111223343332211000                 0   0     257


Q ss_pred             EEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779           71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (277)
Q Consensus        71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~  149 (277)
                      +.||||||..           .+...+......+|++++|+|+..+. .......+..+.. .+.   .|+++|+||+|.
T Consensus        87 i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl  151 (411)
T PRK04000         87 VSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL  151 (411)
T ss_pred             EEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence            8999999943           23333333345679999999998554 4555555555543 232   278999999998


Q ss_pred             CCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...  .........     +..++.......   ....+.|+..+.+++.|++.|...++.
T Consensus       152 ~~~--~~~~~~~~~-----i~~~l~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        152 VSK--ERALENYEQ-----IKEFVKGTVAEN---APIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ccc--hhHHHHHHH-----HHHHhccccCCC---CeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            754  232222222     333332211000   011256888889999999999887653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.56  E-value=4.8e-14  Score=125.51  Aligned_cols=141  Identities=11%  Similarity=0.120  Sum_probs=87.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCC-----------------CCCcceeeEEEEEe
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAG-----------------SSGVTKTCEMKTTV   64 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~-----------------~~~~t~~~~~~~~~   64 (277)
                      ....++|+++|+.++|||||+++|+...-.-              .|..                 ..+.|.........
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            4566999999999999999999997432100              1110                 12445555544443


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                       +++..+.||||||+.+           +..........+|++++|+|+..++...+...+..+.. .+.   +|++|++
T Consensus       104 -~~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvvv  167 (474)
T PRK05124        104 -TEKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVAV  167 (474)
T ss_pred             -cCCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEEE
Confidence             5678899999999432           22222223467799999999986665555554444443 342   3789999


Q ss_pred             eCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ||+|........+......     +..++...+
T Consensus       168 NKiD~~~~~~~~~~~i~~~-----l~~~~~~~~  195 (474)
T PRK05124        168 NKMDLVDYSEEVFERIRED-----YLTFAEQLP  195 (474)
T ss_pred             EeeccccchhHHHHHHHHH-----HHHHHHhcC
Confidence            9999874311334444433     545444433

>PRK10218 GTP-binding protein; Provisional

Probab=99.56  E-value=1.9e-13  Score=124.23  Aligned_cols=169  Identities=14%  Similarity=0.162  Sum_probs=101.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC-Cccc-c------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-S------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (277)
                      ..++|+++|+.++|||||+++|+... .+.. +            ....+.|.......+. +++..+.+|||||..++.
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence            34899999999999999999998522 1111 1            0122344444444333 678899999999976531


Q ss_pred             CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~  163 (277)
                             ..+    ..++..+|++++|+|+..+....+...+..+... +.    |.++++||+|....   .....+..
T Consensus        83 -------~~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a---~~~~vl~e  143 (607)
T PRK10218         83 -------GEV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA---RPDWVVDQ  143 (607)
T ss_pred             -------HHH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC---chhHHHHH
Confidence                   122    2334667999999999866666666666665542 32    78999999996533   33333333


Q ss_pred             cCCchHHHHHhhcCCeEEEE-eCCCcccccChh----------HHHHHHHHHHHHHhhc
Q 023779          164 ECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTE----------QVRQLLSLVNSVIVQN  211 (277)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~----------~~~~L~~~i~~~~~~~  211 (277)
                           +..++..++...... .+....|+..+.          ++..|++.|...++..
T Consensus       144 -----i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        144 -----VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             -----HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence                 333332211100000 001123444443          5788888888877643

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.56  E-value=5.4e-14  Score=123.27  Aligned_cols=137  Identities=13%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCc--c------------ccC-----------------CCCCcceeeEEEEEeeeCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAF--K------------ASA-----------------GSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~--~------------~~~-----------------~~~~~t~~~~~~~~~~~~~   68 (277)
                      ++|+++|+.++|||||+++|+...-.  .            .+.                 ...+.|......... +++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence            47999999999999999999632210  0            011                 012445555555443 577


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.||||||+.+           +...+......+|++++|+|+..++...+...+..+... +.   ++++|++||+|
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence            8899999999542           222222344577999999999867766666665555543 32   27899999999


Q ss_pred             CCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          149 DLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ........+......     +..++...+
T Consensus       145 ~~~~~~~~~~~i~~~-----~~~~~~~~~  168 (406)
T TIGR02034       145 LVDYDEEVFENIKKD-----YLAFAEQLG  168 (406)
T ss_pred             cccchHHHHHHHHHH-----HHHHHHHcC
Confidence            875321233333333     555555444

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.55  E-value=3.2e-14  Score=110.03  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEE--------------------------------------
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKT--------------------------------------   62 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~--------------------------------------   62 (277)
                      |+++|..++|||||||+|+|....+.+..+.+.... .....                                      
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999999876665443221111 11100                                      


Q ss_pred             --------------EeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 023779           63 --------------TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL  128 (277)
Q Consensus        63 --------------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l  128 (277)
                                    ........+.|+||||+.+......       ..+..+.+.+|++++|+++.+.++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence                          0111123589999999976433222       2222223677999999999966666665554444


Q ss_pred             HHHhCcCccCcEEEEEeCC
Q 023779          129 PNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus       129 ~~~~~~~~~~~~ivv~nk~  147 (277)
                      ......    .+++|+||.
T Consensus       154 ~~~~~~----~~i~V~nk~  168 (168)
T PF00350_consen  154 LDPDKS----RTIFVLNKA  168 (168)
T ss_dssp             HTTTCS----SEEEEEE-G
T ss_pred             hcCCCC----eEEEEEcCC
Confidence            443222    589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.55  E-value=8.7e-13  Score=120.36  Aligned_cols=154  Identities=18%  Similarity=0.183  Sum_probs=94.3

Q ss_pred             cCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCcc
Q 023779           26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH  105 (277)
Q Consensus        26 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (277)
                      |.+|+|||||+|+|+|... ..+. ..+.|........ .+++..+.+|||||..+......+  +.+..... ....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n-~pG~Tv~~~~~~i-~~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l-~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGN-WPGVTVEKKEGKL-GFQGEDIEIVDLPGIYSLTTFSLE--EEVARDYL-LNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecC-CCCeEEEEEEEEE-EECCeEEEEEECCCccccCccchH--HHHHHHHH-hhcCCC
Confidence            8999999999999998764 2222 2344444433333 357788999999998765432211  12222211 134789


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeC
Q 023779          106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN  185 (277)
Q Consensus       106 ~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
                      ++++|+|++ .+...    +.+..+....+  .|+++|+||+|..+.  ..+...        .+.+.+..+..++    
T Consensus        75 vvI~VvDat-~ler~----l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pvv----  133 (591)
T TIGR00437        75 LVVNVVDAS-NLERN----LYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPVV----  133 (591)
T ss_pred             EEEEEecCC-cchhh----HHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCEE----
Confidence            999999998 43322    22222222222  399999999997644  222111        2333344454443    


Q ss_pred             CCcccccChhHHHHHHHHHHHHH
Q 023779          186 KTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       186 ~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                        +.|++++.|++++++.+.+..
T Consensus       134 --~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       134 --PTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             --EEECCCCCCHHHHHHHHHHHh
Confidence              457788899999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.55  E-value=2e-14  Score=104.61  Aligned_cols=116  Identities=20%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +|+|+|+.|||||||+++|++.....  ......+.+........ ......+.+||++|....       .......+ 
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-------~~~~~~~~-   71 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEF-------YSQHQFFL-   71 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCH-------HCTSHHHH-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCcccee-------cccccchh-
Confidence            69999999999999999999877541  11111222222222211 122334889999995421       11111112 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                         ..+|++++|+|++...+... ..++.++....+.....|++||.||.|
T Consensus        72 ---~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   72 ---KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             ---HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             ---hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence               34599999999983322222 234455555543222349999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.55  E-value=1.6e-13  Score=125.31  Aligned_cols=165  Identities=15%  Similarity=0.178  Sum_probs=100.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cc--c---------CCCCCcceeeEEEEEee----eCCceEEEEeCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KA--S---------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGL   79 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~--~---------~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~   79 (277)
                      .+.++|+|+|+.++|||||+.+|+.....  ..  +         ....+.|..........    ..+..+.||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            34589999999999999999999742210  00  0         00123444333332221    12457899999997


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~  159 (277)
                      .++       ..++..+    +..+|++++|+|++.+.+..+...+.++.. .  +  .|+++|+||+|....   ....
T Consensus        85 ~dF-------~~~v~~s----l~~aD~aILVVDas~gv~~qt~~~~~~~~~-~--~--lpiIvViNKiDl~~a---~~~~  145 (600)
T PRK05433         85 VDF-------SYEVSRS----LAACEGALLVVDASQGVEAQTLANVYLALE-N--D--LEIIPVLNKIDLPAA---DPER  145 (600)
T ss_pred             HHH-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C--C--CCEEEEEECCCCCcc---cHHH
Confidence            652       2233333    345699999999986676666555544433 1  2  289999999997533   2222


Q ss_pred             HhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ....     +...   ++...   ......|+..+.++.+|++.|...++..
T Consensus       146 v~~e-----i~~~---lg~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        146 VKQE-----IEDV---IGIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHH-----HHHH---hCCCc---ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            2222     3222   22110   0123568888999999999998887653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.55  E-value=2.5e-13  Score=118.87  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=79.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC------Ccc----cc----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFK----AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~------~~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      ..+.++|+++|+.++|||||+++|++..      .+.    ..    ....+.|......... ..+..+.||||||..+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence            3456999999999999999999998431      000    00    0113555555444332 4567799999999543


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                                 +..........+|++++|+|+..+....+...+.++... +.   .++++++||+|....
T Consensus        88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD  143 (394)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence                       222222233577999999999866667777777776653 33   145578999998754

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.55  E-value=1.1e-13  Score=115.35  Aligned_cols=126  Identities=17%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee------------eCCceEEEEeCCCCCCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------------KDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~liDtpG~~~~   82 (277)
                      |.....+|+|+|..|||||||++.+++..+........+.+..........            .....+.||||+|..  
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE--   94 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE--   94 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh--
Confidence            344558999999999999999999997664222211122221111111100            012348899999943  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC---------c-CccCcEEEEEeCCCCCC
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG---------K-NVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~---------~-~~~~~~ivv~nk~D~~~  151 (277)
                               .+......++++++++|+|+|++.+-+... ..++..+.....         . ....|++||.||+|+..
T Consensus        95 ---------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         95 ---------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             ---------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                     344444556889999999999994433333 244455554321         0 01248999999999754

>smart00053 DYNc Dynamin, GTPase

Probab=99.55  E-value=3.6e-13  Score=108.77  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCccee---------eE-----------------------------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKT---------CE-----------------------------   59 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~---------~~-----------------------------   59 (277)
                      +.|+++|++|+||||++++|+|..+++.+..  ...++.-         ..                             
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~  106 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT  106 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999864443311  1100000         00                             


Q ss_pred             ---------EEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHH-HHHHH
Q 023779           60 ---------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVH  126 (277)
Q Consensus        60 ---------~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~-~~~~~  126 (277)
                               ...+...+...++|+||||+.....  ....+...+...+..+.. ..+.+|+|+++...+...+ ..+.+
T Consensus       107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~  186 (240)
T smart00053      107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK  186 (240)
T ss_pred             CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence                     0001111124689999999975421  123344556665555555 3468999999886666655 35555


Q ss_pred             HHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779          127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (277)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
                      ++... +    .++++|+||+|..... ..+.+.+..        -.......|+.+.|.
T Consensus       187 ~ld~~-~----~rti~ViTK~D~~~~~-~~~~~~~~~--------~~~~l~~g~~~v~nr  232 (240)
T smart00053      187 EVDPQ-G----ERTIGVITKLDLMDEG-TDARDILEN--------KLLPLRRGYIGVVNR  232 (240)
T ss_pred             HHHHc-C----CcEEEEEECCCCCCcc-HHHHHHHhC--------CccccCCCEEEEECC
Confidence            55442 3    3899999999987652 224444433        011234566666665

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.54  E-value=8.2e-14  Score=112.35  Aligned_cols=136  Identities=18%  Similarity=0.221  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC--cc------------cc---------------CCCCCcceeeEEEEEeeeCCceE
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKA--FK------------AS---------------AGSSGVTKTCEMKTTVLKDGQVV   71 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~--~~------------~~---------------~~~~~~t~~~~~~~~~~~~~~~~   71 (277)
                      +|+++|+.|+|||||+.+|+....  ..            .|               ....+.|.......+. +.+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence            489999999999999999962210  00            00               1122444444444443 678899


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                      .+|||||+.+           +...+..+...+|++++|+|+...       ........+..+. ..+.   +|++|++
T Consensus        80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv  144 (219)
T cd01883          80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV  144 (219)
T ss_pred             EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence            9999999532           222222334567999999999842       2223344443333 2332   3899999


Q ss_pred             eCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779          145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       145 nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ||+|....  ....++..+..     +..++...+
T Consensus       145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~  174 (219)
T cd01883         145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVG  174 (219)
T ss_pred             EccccccccccHHHHHHHHHH-----HHHHHHHcC
Confidence            99998732  11334555544     555555543

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.54  E-value=8.1e-14  Score=128.84  Aligned_cols=142  Identities=11%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccC-----------------CCCCcceeeEEEEE
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT   63 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~   63 (277)
                      +..+.++|+++|++++|||||+++|+.....-              .|.                 ...+.|........
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44556899999999999999999998533110              111                 01234444444433


Q ss_pred             eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779           64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (277)
Q Consensus        64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (277)
                      . +++..+.|+||||+.+           +...+......+|++++|+|+..+....+...+.++... +.   ++++|+
T Consensus       100 ~-~~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv  163 (632)
T PRK05506        100 A-TPKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA  163 (632)
T ss_pred             c-cCCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence            3 5778899999999532           222222234577999999999866665555555555443 42   378999


Q ss_pred             EeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      +||+|........+......     +..++...+
T Consensus       164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~  192 (632)
T PRK05506        164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLG  192 (632)
T ss_pred             EEecccccchhHHHHHHHHH-----HHHHHHHcC
Confidence            99999864211334444443     555555444

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.54  E-value=6.1e-14  Score=122.24  Aligned_cols=197  Identities=15%  Similarity=0.144  Sum_probs=133.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....||+|+|.-|+||||||-+|+...+++.-+.... .+...  .-.+.......++||+.-.+           -..+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP--advtPe~vpt~ivD~ss~~~-----------~~~~   72 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP--ADVTPENVPTSIVDTSSDSD-----------DRLC   72 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC--CccCcCcCceEEEecccccc-----------hhHH
Confidence            3558999999999999999999998887554332221 11111  11223445588999984222           1222


Q ss_pred             HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      +....+.+|+++++++.++  .+..-...|+..++..+|+....|+|+|.||+|.......+++..        ...++.
T Consensus        73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~  144 (625)
T KOG1707|consen   73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMI  144 (625)
T ss_pred             HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHH
Confidence            2233445699999998873  344555788999999999888899999999999776522322321        112222


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE  239 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      .    +..++....+||+...++.+++.+..+.+-+.-++.|..+.++........-.++-.+..
T Consensus       145 ~----f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D  205 (625)
T KOG1707|consen  145 A----FAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISD  205 (625)
T ss_pred             H----hHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhc
Confidence            1    223344457899999999999999999998888888988877777766666666666554

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.54  E-value=3.2e-13  Score=122.80  Aligned_cols=115  Identities=18%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee----------C-------CceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~liDtpG~~   80 (277)
                      .+..|+++|++|+|||||+|+|.+.......  ..+.|.+.........          .       -..++||||||..
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            3467999999999999999999876542211  1122222211111000          0       0127899999965


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      +           +.......+..+|++++|+|++.++...+...+..+... +    .|+++++||+|..
T Consensus        83 ~-----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~  136 (586)
T PRK04004         83 A-----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K----TPFVVAANKIDRI  136 (586)
T ss_pred             H-----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence            3           222222344567999999999866767776666665542 2    3899999999975

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=1.5e-13  Score=111.66  Aligned_cols=159  Identities=19%  Similarity=0.211  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEEEEeeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      -.|++||-+|+|||||+|+|+...+ ..+  ....|+ ....- ...+++. ++++-|.||+........-+...+.+.+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp-kVa--~YaFTTL~P~iG-~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi  272 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP-KVA--HYAFTTLRPHIG-TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI  272 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC-ccc--ccceeeeccccc-eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence            3589999999999999999997664 222  233333 33333 3345554 4999999999987777777778888887


Q ss_pred             hhcCCCccEEEEEEeCCCC--CCHHH--HH---HHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           98 GMAKDGIHAFLVVFSVTNR--FSQEE--ET---AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~--~~~~~--~~---~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      ..+    ..++||+|++..  .++.+  ..   .++...+..   ..+|.+||.||+|..+.+    .+++        .
T Consensus       273 ER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L---~~rp~liVaNKiD~~eae----~~~l--------~  333 (366)
T KOG1489|consen  273 ERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL---ADRPALIVANKIDLPEAE----KNLL--------S  333 (366)
T ss_pred             Hhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh---ccCceEEEEeccCchhHH----HHHH--------H
Confidence            766    999999999932  13333  12   222233332   345899999999964321    1112        2


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ++........++     +.||+...++..|++.+..
T Consensus       334 ~L~~~lq~~~V~-----pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  334 SLAKRLQNPHVV-----PVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HHHHHcCCCcEE-----EeeeccccchHHHHHHHhh
Confidence            333333333222     4577778889999887764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.54  E-value=1.8e-13  Score=109.05  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +|+++|++|||||||++.|++..+.....+     +.........   ..+..+.||||||...           +...+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~   65 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL   65 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence            589999999999999999997654222111     1111111111   2356799999999553           22333


Q ss_pred             hhcCCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779           98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        98 ~~~~~~~-~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..++... ++++||+|+. .....-.....++..++    ......|++|+.||+|....
T Consensus        66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            3344555 9999999998 33111112222222211    11122499999999997654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.4e-13  Score=117.86  Aligned_cols=178  Identities=14%  Similarity=0.135  Sum_probs=110.6

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC-CCCCchHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD-LSAGSEFVGKEIV   94 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~   94 (277)
                      ...++.|+|+|++|+|||||+|+|+..+.  +..++.+.|++.........+|..++|+||.|+-. .....+.+.  +.
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g--I~  340 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG--IE  340 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh--HH
Confidence            34568999999999999999999998887  66677777777766666668999999999999987 222222221  12


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCc----CccCcEEEEEeCCCCCCcccccHHHHhcccCCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGK----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~  167 (277)
                      ++ ......+|++++|+|+....+..+....+.+...   +..    .-+++++++.||.|...+    +...-..    
T Consensus       341 rA-~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~----~~~~~~~----  411 (531)
T KOG1191|consen  341 RA-RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK----IPEMTKI----  411 (531)
T ss_pred             HH-HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc----cccccCC----
Confidence            22 2234677999999999644444444444444332   111    122689999999997654    1000000    


Q ss_pred             hHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          168 PLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       168 ~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                       ........+ ..+..   ....++.++.+...|.+.+.+.+..
T Consensus       412 -~~~~~~~~~~~~~~i---~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  412 -PVVYPSAEGRSVFPI---VVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             -ceeccccccCcccce---EEEeeechhhhHHHHHHHHHHHHHH
Confidence             000001111 11111   1124667788999998888777654

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2e-13  Score=98.44  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..++.++|.+.+|||||+-+-++..+...-.+..+..  ..+..+.. -....+.+|||.|..           .+....
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqE-----------ryrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccch-----------hhhHHH
Confidence            4689999999999999999999877533322222222  22222211 123458999999933           344555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..+++++++|++++|+++.-+... ..+.-.++..+-.++  |+|++.||||+...  ..+...       .-+.+....
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~e-------~g~~l~~~L  156 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISHE-------RGRQLADQL  156 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeHH-------HHHHHHHHh
Confidence            567899999999999983222222 223333333333333  89999999997654  222111       133455555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      |-.++      +.|++.+-++..+++.+-..+-
T Consensus       157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  157 GFEFF------ETSAKENINVKQVFERLVDIIC  183 (193)
T ss_pred             ChHHh------hhcccccccHHHHHHHHHHHHH
Confidence            54333      5677777788877776665543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.4e-13  Score=123.55  Aligned_cols=217  Identities=22%  Similarity=0.259  Sum_probs=133.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCC--ccccCCC--------------CCcceeeEEEEEeeeCC-ceEEEEeCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGS--------------SGVTKTCEMKTTVLKDG-QVVNVIDTPG   78 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~--~~~~~~~--------------~~~t~~~~~~~~~~~~~-~~~~liDtpG   78 (277)
                      ..+.++|+|+||..+|||||..+|+-..-  -..|...              .+.|......... |.+ ..+++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeCCCC
Confidence            34568999999999999999998862110  0011111              2566666555554 775 9999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~  158 (277)
                      +.|+.       .++.+++..+    |+.++|+|+..+........|+.+.+.   .+  |.++++||+|....      
T Consensus        86 HVDFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a------  143 (697)
T COG0480          86 HVDFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA------  143 (697)
T ss_pred             ccccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc------
Confidence            99863       4666776655    999999999988888888888877764   33  89999999998876      


Q ss_pred             HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC-CCC-----CChHHHHHHHHHHHHHH
Q 023779          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG-GQP-----YTDELKRGATELRDKKA  232 (277)
Q Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~  232 (277)
                      ++...     ...+...++.....++......    ..+......+....-... +..     .+.+....+.++  +..
T Consensus       144 ~~~~~-----~~~l~~~l~~~~~~v~~pIg~~----~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~--r~~  212 (697)
T COG0480         144 DFYLV-----VEQLKERLGANPVPVQLPIGAE----EEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEA--REK  212 (697)
T ss_pred             Chhhh-----HHHHHHHhCCCceeeeccccCc----cccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHH--HHH
Confidence            23222     4445566666666665554431    111211222211111111 111     224444555454  444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023779          233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEM  266 (277)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (277)
                      -++.+.+.+++.++.+.+..+...++..+.++..
T Consensus       213 ~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~  246 (697)
T COG0480         213 LLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG  246 (697)
T ss_pred             HHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence            5555666666677777776665555544554443

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.53  E-value=4.7e-13  Score=110.16  Aligned_cols=168  Identities=20%  Similarity=0.199  Sum_probs=108.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      |++||-+++|||||+++++...+   .+...+.|+-.....+.. ..+..+++-|.||+........-+..++.+.+..+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            78999999999999999997653   222333343333332332 35667999999999987766666788888888777


Q ss_pred             CCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779          101 KDGIHAFLVVFSVTNRFS----QEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                          -++++|+|++ +..    ..+ ..+...|...-..=..+|.+||+||+|+..+. +.++.+.+        .+.+.
T Consensus       239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~--------~l~~~  304 (369)
T COG0536         239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKK--------ALAEA  304 (369)
T ss_pred             ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHH--------HHHHh
Confidence                8999999998 332    222 23333343321111335999999999965441 23332222        22233


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ++.....+     .|+....+++.|+..+..++...
T Consensus       305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         305 LGWEVFYL-----ISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence            33322221     37777789999999998888763

>PRK13351 elongation factor G; Reviewed

Probab=99.53  E-value=1.5e-13  Score=128.29  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=83.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cc-----cC---------CCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KA-----SA---------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~-----~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      ...++|+|+|+.|+|||||+++|+.....  ..     +.         ...+.|......... +.+..+.+|||||..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcH
Confidence            35589999999999999999999742210  00     00         012334444444443 678899999999965


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~  160 (277)
                      +           +......++..+|++++|+|+..+........+..+... +    .|+++++||+|....   .+...
T Consensus        85 d-----------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~---~~~~~  145 (687)
T PRK13351         85 D-----------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA---DLFKV  145 (687)
T ss_pred             H-----------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC---CHHHH
Confidence            4           222223344566999999999866666666666655542 2    389999999997654   45544


Q ss_pred             hcc
Q 023779          161 LGH  163 (277)
Q Consensus       161 l~~  163 (277)
                      ++.
T Consensus       146 ~~~  148 (687)
T PRK13351        146 LED  148 (687)
T ss_pred             HHH
Confidence            444

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.52  E-value=7.9e-14  Score=119.49  Aligned_cols=137  Identities=18%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      ++..+...+++|+|-+++|||||+|.++..++   .+.+...|+..-+.++..+.-..+.++||||+.+.-..+..+.+ 
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-  237 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-  237 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-
Confidence            44456679999999999999999999987664   33445556655555555567778999999999985432222221 


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~  159 (277)
                      +. ++.....-..++||+.|++  -+++..+ ..++..++.+|...   |+|+|+||+|....  +.+.+
T Consensus       238 mq-sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~  301 (620)
T KOG1490|consen  238 MQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ  301 (620)
T ss_pred             HH-HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence            11 1111122337899999999  3566555 57778888888764   89999999998887  45543

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=5.8e-13  Score=111.64  Aligned_cols=154  Identities=21%  Similarity=0.301  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeeEEEEEeee-CCc--eEEEEeCCCCCCCCCCc-----
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGS-----   86 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~~--~~~liDtpG~~~~~~~~-----   86 (277)
                      +++.++|.+|.|||||||+|++......     .......|........... +|.  .++|+|||||+|.....     
T Consensus        22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p  101 (366)
T KOG2655|consen   22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP  101 (366)
T ss_pred             eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence            7899999999999999999998754221     1111122333333333222 232  48899999999876432     


Q ss_pred             --hHHHHHHHHHHhh-------c--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc
Q 023779           87 --EFVGKEIVKCLGM-------A--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (277)
Q Consensus        87 --~~~~~~~~~~~~~-------~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~  154 (277)
                        ..+..++..++..       .  ..++|+.||.+... .++.+.|...++.+...    +  ++|-|+.|.|.+.+  
T Consensus       102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~lT~--  173 (366)
T KOG2655|consen  102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTLTK--  173 (366)
T ss_pred             hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccCCH--
Confidence              2344455555532       1  23789999999977 56888888777766653    2  89999999999988  


Q ss_pred             ccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (277)
Q Consensus       155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
                      ..+..+...     ....+.....+++.|...
T Consensus       174 ~El~~~K~~-----I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  174 DELNQFKKR-----IRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence            777777766     676777766666665544

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.52  E-value=1.3e-13  Score=117.16  Aligned_cols=175  Identities=19%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...+|+|+|.+|+|||||||+|.|...-+.+..+.+   +|.....+..  ..-.++++||.||.+.+.-+.+.    +.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~----Yl  107 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEE----YL  107 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence            348999999999999999999987443323333332   3333333332  34456999999999865433322    22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC-Cc----ccccH--HHHhcccCCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED----HEKTL--EDFLGHECPK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~-~~----~~~~l--~~~l~~~~~~  167 (277)
                      ....  +...|.||++.+ . +++..+..+...++.+ |+    |+.+|-||+|.. ..    ....+  +..++. ...
T Consensus       108 ~~~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~  177 (376)
T PF05049_consen  108 KEVK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRE  177 (376)
T ss_dssp             HHTT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHH
T ss_pred             HHcc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCHHHHHHH-HHH
Confidence            2221  234488777655 3 8988888888888874 55    899999999952 00    00011  122221 001


Q ss_pred             hHHHHHhh---cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          168 PLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       168 ~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ...+-+..   +..+++.+++....    ...++.|.+.+.+-++...
T Consensus       178 ~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  178 NCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence            12222222   23567777776443    3678888888887776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.52  E-value=1.1e-12  Score=96.48  Aligned_cols=157  Identities=19%  Similarity=0.217  Sum_probs=100.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|.++|..|+||||+++.+.+.+.  .   ...+|......... +++..+.+||.-|           +..+..+.
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~-~~~~~L~iwDvGG-----------q~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLE-YKGYTLNIWDVGG-----------QKTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEE-ecceEEEEEEcCC-----------cchhHHHH
Confidence            468999999999999999999998774  2   22344444444443 7889999999998           23566677


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ..+|...|++++|+|.+.+..-.+  ....+++.....  +-.|++|+.||.|..+.  -..+.+...   ..+.++...
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~---~~L~~l~ks  150 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA---LDLEELAKS  150 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh---hCHHHhccc
Confidence            777888899999999984333222  222333332211  11389999999997644  333332211   126666666


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i  204 (277)
                      ++.+.+.      +++..+.++.+-++++
T Consensus       151 ~~~~l~~------cs~~tge~l~~gidWL  173 (185)
T KOG0073|consen  151 HHWRLVK------CSAVTGEDLLEGIDWL  173 (185)
T ss_pred             cCceEEE------EeccccccHHHHHHHH
Confidence            6666664      4555554444434443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.52  E-value=2.9e-13  Score=119.32  Aligned_cols=168  Identities=11%  Similarity=0.112  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEe--------------------------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV--------------------------------   64 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~--------------------------------   64 (277)
                      ...+|+++|+..+|||||+.+|+|....... ....+.|...++....                                
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            4589999999999999999999986642211 1112223222211100                                


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV  143 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (277)
                      ....+.+.|+||||..           .+...+......+|++++|+|+..+ ......+.+..+. .++-   +|++|+
T Consensus       113 ~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iIVv  177 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHIIIL  177 (460)
T ss_pred             ccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEEEE
Confidence            0012468999999943           3333333344577999999999843 3444455554443 3443   279999


Q ss_pred             EeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +||+|....  ..+.+.+..     +++++..+..   ......+.|+..+.|++.|++.|...++.
T Consensus       178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             EecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            999998754  444444444     5555433211   11122356888889999999999976654

>cd04167 Snu114p Snu114p subfamily

Probab=99.52  E-value=6.2e-13  Score=106.84  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeeEEEEEee----eCCceEEEEeCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG   78 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG   78 (277)
                      ++|+++|+.|+|||||+++|++.......                 ....+.+..........    .....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            46999999999999999999864321110                 00012222222222111    1235689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ..+.           ......++..+|++++|+|+....+.....++..+..   .+  .|+++|+||+|..
T Consensus        81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL  136 (213)
T ss_pred             Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence            7652           1222223456699999999985555555444444332   12  3899999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.51  E-value=2.1e-13  Score=111.30  Aligned_cols=163  Identities=20%  Similarity=0.250  Sum_probs=107.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .--+|+|||++++|||||+|.|++...   .......|+-..+.....+++-.+.++|+||+.....+..-...++.   
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl---  135 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL---  135 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee---
Confidence            447999999999999999999998663   33334445555555556689999999999999865544332223332   


Q ss_pred             hhcCCCccEEEEEEeCCC------------------------------------------CCCHHHHHHHH-H-------
Q 023779           98 GMAKDGIHAFLVVFSVTN------------------------------------------RFSQEEETAVH-R-------  127 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~------------------------------------------~~~~~~~~~~~-~-------  127 (277)
                       ...+.+|++++|+|+..                                          +++..+...+. .       
T Consensus       136 -sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~  214 (365)
T COG1163         136 -SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH  214 (365)
T ss_pred             -eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence             33567799999999872                                          22211111111 1       


Q ss_pred             ---------------HHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCccccc
Q 023779          128 ---------------LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK  192 (277)
Q Consensus       128 ---------------l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  192 (277)
                                     +..+.+.....|.++|+||.|....  +.++...+.             .       +....|++
T Consensus       215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~l~~~-------------~-------~~v~isa~  272 (365)
T COG1163         215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELERLARK-------------P-------NSVPISAK  272 (365)
T ss_pred             cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHHHHhc-------------c-------ceEEEecc
Confidence                           1222334557899999999998765  333332221             1       22234777


Q ss_pred             ChhHHHHHHHHHHHHHh
Q 023779          193 GTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       193 ~~~~~~~L~~~i~~~~~  209 (277)
                      .+.|+++|.+.|.+.+.
T Consensus       273 ~~~nld~L~e~i~~~L~  289 (365)
T COG1163         273 KGINLDELKERIWDVLG  289 (365)
T ss_pred             cCCCHHHHHHHHHHhhC
Confidence            88899999999999875

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.50  E-value=1.1e-12  Score=105.78  Aligned_cols=116  Identities=19%  Similarity=0.171  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-C--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|+.|||||||++++.+..+.....    .|........... .  ...+.+|||+|.           .++...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHH
Confidence            899999999999999999999877643322    1211111111111 1  345889999993           345566


Q ss_pred             HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ...++.+++++++|+|...  +.......+...+....+..  .|+++|.||+|....
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~  126 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE  126 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence            6667899999999999983  22222345555556654322  399999999997755

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.50  E-value=1.7e-13  Score=109.94  Aligned_cols=115  Identities=20%  Similarity=0.309  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc----cC----------CCCCcceeeEEEEEee-e--------CCceEEEEeC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKA----SA----------GSSGVTKTCEMKTTVL-K--------DGQVVNVIDT   76 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~----~~----------~~~~~t~~~~~~~~~~-~--------~~~~~~liDt   76 (277)
                      ++|+++|+.++|||||+.+|+...-...    +.          ...+.|.......... .        .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            4799999999999999999974321000    00          0112232222211111 1        1567899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ||..+.       .....    .++..+|++++|+|+..+.+......+..+...   .  .|+++++||+|..
T Consensus        81 PG~~~f-------~~~~~----~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDF-------SSEVT----AALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL  138 (222)
T ss_pred             CCcccc-------HHHHH----HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence            997752       12233    334566999999999977777666665555432   2  2899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=4.9e-12  Score=95.27  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=86.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~   89 (277)
                      ...+|+++|+.|+||||++..++.......     ..+..+   .|+...+.....+.+..+++++|||.          
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq----------   78 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ----------   78 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc----------
Confidence            346899999999999999999986653111     112222   45555555566555688999999993          


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                       .++.-.+....+++.++++++|.+...+.....++..+.....    .|++|..||.|....
T Consensus        79 -~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a  136 (187)
T COG2229          79 -ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA  136 (187)
T ss_pred             -HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC
Confidence             3455555556788999999999986666666777777776543    289999999997765

>PLN03126 Elongation factor Tu; Provisional

Probab=99.47  E-value=1.4e-12  Score=115.81  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=89.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+.++|+++|+.++|||||+++|++.....              ......+.|.......+. +++..+.+|||||+.+ 
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~-  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD-  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH-
Confidence            455899999999999999999998522100              001123445444444333 5678899999999542 


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHh
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFL  161 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l  161 (277)
                                +...+......+|++++|+|+..+....+++.+..+... +..   ++++++||+|....  .. .+...
T Consensus       157 ----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~  220 (478)
T PLN03126        157 ----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE  220 (478)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence                      222223333567999999999877777777777766553 431   37889999998754  33 23333


Q ss_pred             cccCCchHHHHHhhcC
Q 023779          162 GHECPKPLKEILQLCD  177 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~  177 (277)
                      .+     +..++..++
T Consensus       221 ~~-----i~~~l~~~g  231 (478)
T PLN03126        221 LE-----VRELLSSYE  231 (478)
T ss_pred             HH-----HHHHHHhcC
Confidence            33     667776653

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.47  E-value=9.4e-13  Score=116.45  Aligned_cols=139  Identities=17%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--ccc------------c---------------CCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--FKA------------S---------------AGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~~~------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (277)
                      +..+|+++|+.++|||||+.+|+....  ...            +               ....+.|.......+. +++
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~   84 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   84 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence            448999999999999999998873110  000            0               0122455555555443 678


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      +.++|+||||+.+           +...+......+|++++|+|+..+.       ....++.+..+.. .|-.   ++|
T Consensus        85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii  149 (446)
T PTZ00141         85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI  149 (446)
T ss_pred             eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence            8899999999543           3333333446779999999998543       2455666666554 3432   578


Q ss_pred             EEEeCCCCCC--cccccHHHHhcccCCchHHHHHhhcC
Q 023779          142 VVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       142 vv~nk~D~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      |++||+|...  -....++.....     +..++...+
T Consensus       150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g  182 (446)
T PTZ00141        150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVG  182 (446)
T ss_pred             EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcC
Confidence            9999999432  111455666655     666666554

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.7e-12  Score=112.52  Aligned_cols=160  Identities=15%  Similarity=0.174  Sum_probs=116.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .++.|-|+|+...|||||+.+|-+..+...  -..+.|..++.+.+....|..++|+||||..           .|...-
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR  218 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR  218 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence            567899999999999999999987666333  2457888888888877789999999999943           344444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH---HHHh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK---EILQ  174 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~---~~~~  174 (277)
                      .......|.+++|+.+.+++.+.+.+.+..++..   ++  |++|.+||+|+.+.   ..+.....     |-   =.++
T Consensus       219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a---~pekv~~e-----L~~~gi~~E  285 (683)
T KOG1145|consen  219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGA---NPEKVKRE-----LLSQGIVVE  285 (683)
T ss_pred             hccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCC---CHHHHHHH-----HHHcCccHH
Confidence            4455677999999999988877777766655543   33  99999999997654   33333332     21   1356


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..|..+..+    +.|+.++.|++.|.+.+.-.
T Consensus       286 ~~GGdVQvi----piSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  286 DLGGDVQVI----PISALTGENLDLLEEAILLL  314 (683)
T ss_pred             HcCCceeEE----EeecccCCChHHHHHHHHHH
Confidence            667666553    45777888999888776543

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.8e-12  Score=112.82  Aligned_cols=162  Identities=16%  Similarity=0.187  Sum_probs=112.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+.|.++|+...|||||+-.|-+.++...  -..+.|.....+.....  ....++|+||||..           .|...
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~m   71 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTAM   71 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHHH
Confidence            46799999999999999999987776333  24578888888877644  34789999999943           33333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      -...+.-.|.+++|+++..++.+.+...++.++.. +-    |++|.+||+|+...+...+...+.. ..    =..+.+
T Consensus        72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~v----P~iVAiNKiDk~~~np~~v~~el~~-~g----l~~E~~  141 (509)
T COG0532          72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-GV----PIVVAINKIDKPEANPDKVKQELQE-YG----LVPEEW  141 (509)
T ss_pred             HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-CC----CEEEEEecccCCCCCHHHHHHHHHH-cC----CCHhhc
Confidence            33344566999999999988888888887777764 33    9999999999886522222222222 00    011222


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +....+    .+.||+.+.|+++|+..|.-.
T Consensus       142 gg~v~~----VpvSA~tg~Gi~eLL~~ill~  168 (509)
T COG0532         142 GGDVIF----VPVSAKTGEGIDELLELILLL  168 (509)
T ss_pred             CCceEE----EEeeccCCCCHHHHHHHHHHH
Confidence            322211    256899999999999987654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.46  E-value=2.6e-12  Score=100.55  Aligned_cols=154  Identities=20%  Similarity=0.274  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----CCCCCcceeeEEEEEeee-CCc--eEEEEeCCCCCCCCCCch----
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGSE----   87 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~-~~~--~~~liDtpG~~~~~~~~~----   87 (277)
                      .+|.+||.+|.||||++|+|+...+..++     .-+.+.|+.......... ++.  .++++|||||+|....+.    
T Consensus        47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP  126 (336)
T KOG1547|consen   47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP  126 (336)
T ss_pred             eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence            68999999999999999999754443321     123345555544433322 332  489999999998765431    


Q ss_pred             ---HHHHHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           88 ---FVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        88 ---~~~~~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                         .+.++..+++..          ....+|++||.+..+ ..+...|..+++.+.+..      +++-|+-|.|.+.- 
T Consensus       127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl-  199 (336)
T KOG1547|consen  127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL-  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH-
Confidence               133333333321          124679999999988 778888888888777752      78899999998765 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
                       +....|.+.     +++-+.+.+..++.....
T Consensus       200 -eEr~~Fkqr-----I~~el~~~~i~vYPq~~f  226 (336)
T KOG1547|consen  200 -EERSAFKQR-----IRKELEKHGIDVYPQDSF  226 (336)
T ss_pred             -HHHHHHHHH-----HHHHHHhcCccccccccc
Confidence             555566655     666666666666654443

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.46  E-value=1.7e-12  Score=116.66  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=77.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC--CCCccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt   76 (277)
                      .+.++|+|+|+.|+|||||+++|+.  ......|..                  ..+.+.......+ .+++..+.+|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~-~~~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF-PYRDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-EECCEEEEEEEC
Confidence            3458999999999999999999962  111111100                  0122333333333 367889999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ||..+.       ..+....    +..+|++++|+|+..++......++..... .+    .|+++++||+|....
T Consensus        87 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDF-------SEDTYRT----LTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhh-------HHHHHHH----HHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence            997652       1223333    345699999999986676666666655443 23    289999999997654

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.2e-12  Score=113.44  Aligned_cols=167  Identities=19%  Similarity=0.239  Sum_probs=119.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc---c----------CCCCCcceeeEEEEEeeeCC---ceEEEEeCCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA---S----------AGSSGVTKTCEMKTTVLKDG---QVVNVIDTPG   78 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~---~----------~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG   78 (277)
                      |.++-++++||.+...|||||...|+....+-.   +          .-..+.|...+...+. |.+   ..+++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasif-y~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIF-YKDGQSYLLNLIDTPG  134 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEE-EEcCCceEEEeecCCC
Confidence            446778999999999999999999874332100   0          0123677766666555 343   6689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~  158 (277)
                      ..|+..       +..+.+..+    +++|+|+|++++....+...+.+..+. +-    .+|.|+||+|.-.   ...+
T Consensus       135 HvDFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~---adpe  195 (650)
T KOG0462|consen  135 HVDFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPS---ADPE  195 (650)
T ss_pred             cccccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCC---CCHH
Confidence            998754       667777766    999999999988877776665555443 22    5889999999654   3555


Q ss_pred             HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      .....     +.++...++....      ..|++.+.++.+|++.|.+.++...
T Consensus       196 ~V~~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  196 RVENQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             HHHHH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCC
Confidence            55554     6666666665433      3488889999999999999887643

>TIGR00503 prfC peptide chain release factor 3

Probab=99.44  E-value=2.9e-12  Score=115.23  Aligned_cols=119  Identities=16%  Similarity=0.150  Sum_probs=77.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC--CCCccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt   76 (277)
                      .+.++|+|+|+.|+|||||+++|+-  ......|..                  ..+.+.......+. +.+..+.+|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence            3558999999999999999999852  111111100                  11233333334333 67889999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ||..+           +......++..+|++++|+|+..++......+++.+.. .+    .|+++++||+|....
T Consensus        88 PG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHED-----------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhh-----------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence            99753           22222223456799999999986666666666654443 22    389999999997543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.44  E-value=4.6e-13  Score=94.01  Aligned_cols=143  Identities=20%  Similarity=0.250  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|++||+.|+|||||+++|-|.+.....      |..      ..+++.  ..|||||.+-       -......++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQA------ve~~d~--~~IDTPGEy~-------~~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQA------VEFNDK--GDIDTPGEYF-------EHPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcc------cce------eeccCc--cccCCchhhh-------hhhHHHHHHHH
Confidence            68999999999999999999987753221      111      112222  2789999553       12344555666


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ....+|++++|..+..+.+.-.    ..+...+    .+|+|-|+||.|+.++  ..++    .     .+.++...|..
T Consensus        61 t~~dadvi~~v~~and~~s~f~----p~f~~~~----~k~vIgvVTK~DLaed--~dI~----~-----~~~~L~eaGa~  121 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFP----PGFLDIG----VKKVIGVVTKADLAED--ADIS----L-----VKRWLREAGAE  121 (148)
T ss_pred             HhhccceeeeeecccCccccCC----ccccccc----ccceEEEEecccccch--HhHH----H-----HHHHHHHcCCc
Confidence            6778999999999883322111    1122222    2379999999998866  3333    2     44556666644


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .++     ..++..+.++++|++++...
T Consensus       122 ~IF-----~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         122 PIF-----ETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             ceE-----EEeccCcccHHHHHHHHHhh
Confidence            333     33555668899999887654

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.40  E-value=6.4e-12  Score=92.33  Aligned_cols=162  Identities=17%  Similarity=0.132  Sum_probs=102.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..++++||++-+|||+|+..++...++  +.+.+...++....-+....|.  .+.+|||.|           ++.+...
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfa--elsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi   74 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFA--ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI   74 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCccc--ccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence            478999999999999999999977763  2333322222211112223343  488999999           4466677


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcE-EEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...+|++.-++++|+|++++-+.+- ..++.......+.+ .+++ .+|.+|+|+...  ..+..  +     ..+.+..
T Consensus        75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P-~k~VFlLVGhKsDL~Sq--RqVt~--E-----EaEklAa  144 (213)
T KOG0091|consen   75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGP-DKVVFLLVGHKSDLQSQ--RQVTA--E-----EAEKLAA  144 (213)
T ss_pred             HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCC-CeeEEEEeccccchhhh--ccccH--H-----HHHHHHH
Confidence            7778899999999999996655544 44555555444422 2344 477899997743  11110  1     1334545


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+|-.++      ++|++.+.|+++.+..+.+-+.
T Consensus       145 ~hgM~FV------ETSak~g~NVeEAF~mlaqeIf  173 (213)
T KOG0091|consen  145 SHGMAFV------ETSAKNGCNVEEAFDMLAQEIF  173 (213)
T ss_pred             hcCceEE------EecccCCCcHHHHHHHHHHHHH
Confidence            5554444      5688888899988887766543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.39  E-value=1.1e-11  Score=109.77  Aligned_cols=139  Identities=15%  Similarity=0.210  Sum_probs=88.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--c------------cc---------------cCCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--F------------KA---------------SAGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~------------~~---------------~~~~~~~t~~~~~~~~~~~~~   68 (277)
                      +.++|+++|+.++|||||+-+|+-...  .            ..               .....+.|.......+. +.+
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~   84 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTK   84 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCC
Confidence            448999999999999999988862110  0            00               01122455555555444 577


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~------~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      +.++++||||..           ++...+..++..+|++++|+|+..+ +.      ...++.+..+.. .+-.   +++
T Consensus        85 ~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~iI  149 (447)
T PLN00043         85 YYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QMI  149 (447)
T ss_pred             EEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cEE
Confidence            889999999943           3444445556788999999999843 32      333444444433 3432   678


Q ss_pred             EEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779          142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       142 vv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      |++||+|....  ....+++.++.     ++.++...+
T Consensus       150 V~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g  182 (447)
T PLN00043        150 CCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG  182 (447)
T ss_pred             EEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence            89999996521  11345555655     777777665

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.39  E-value=2.1e-12  Score=94.32  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +.+|+++|..=+|||||+-..+...+.....+....+.......+. ...-.+.+|||.|           ++.+-..-.
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAG-----------QErfHALGP   80 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAG-----------QERFHALGP   80 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccc-----------hHhhhccCc
Confidence            3899999999999999998887544311111111111111111111 1234588999999           223333334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .+|++.++.|+|+|++.+-+..- +.|+..++.+.|..+  -++||.||+|..+.  ..+.  ...     .....+..|
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt--~qe-----Ae~YAesvG  149 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVT--RQE-----AEAYAESVG  149 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhh--HHH-----HHHHHHhhc
Confidence            67899999999999995544433 677778888888776  78899999996533  1110  111     233445556


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..|.      ..|++.+.++.+|+..+...+-
T Consensus       150 A~y~------eTSAk~N~Gi~elFe~Lt~~Mi  175 (218)
T KOG0088|consen  150 ALYM------ETSAKDNVGISELFESLTAKMI  175 (218)
T ss_pred             hhhe------ecccccccCHHHHHHHHHHHHH
Confidence            6655      4688889999999998866443

>cd01882 BMS1 Bms1

Probab=99.39  E-value=4.5e-11  Score=96.67  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+..|+++|++|+|||||+|.|++........ ....+     .......+..+.++||||..          ..+...
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~~  100 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMIDI  100 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-ccccc-----EEEEecCCceEEEEeCCchH----------HHHHHH
Confidence            345889999999999999999998753211111 11111     11122367789999999832          223333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED  152 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~  152 (277)
                      +    ..+|++++++|+...+...+..++..+... +.    | +++|+||+|....
T Consensus       101 a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~  148 (225)
T cd01882         101 A----KVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK  148 (225)
T ss_pred             H----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence            2    456999999999867777777777777653 32    5 4569999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.9e-11  Score=88.85  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+++++|+.|+|||.|+..+....+ .. .+.+...+..... +....+  ..+.+|||.|           ++.+....
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kf-kD-dssHTiGveFgSr-IinVGgK~vKLQIWDTAG-----------QErFRSVt   75 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKF-KD-DSSHTIGVEFGSR-IVNVGGKTVKLQIWDTAG-----------QERFRSVT   75 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhh-cc-cccceeeeeecce-eeeecCcEEEEEEeeccc-----------HHHHHHHH
Confidence            6899999999999999999886554 22 2222222222211 122333  3588999999           44666667


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+|+++.+.++|+|++.+-+... ..|+.-++.+..+.+  -++++.||.|....
T Consensus        76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~  129 (214)
T KOG0086|consen   76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE  129 (214)
T ss_pred             HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence            778999999999999996555544 345555555544432  45566899996644

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.37  E-value=4.9e-11  Score=103.66  Aligned_cols=89  Identities=20%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--------------------eeC---CceEEEEeC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------LKD---GQVVNVIDT   76 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~---~~~~~liDt   76 (277)
                      .+|+|+|.+|+|||||+|+|++..... ... ...|.........                    ..+   ...+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~-~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEI-ANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccc-cCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            579999999999999999999876422 111 1222222111100                    011   245789999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ||+.........+...+...+    +.+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            999764332333444454444    4569999999996

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.37  E-value=4.6e-11  Score=101.66  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc-----------------cccCCCCCcceeeEE---EEEeeeCC----ceEE
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-----------------KASAGSSGVTKTCEM---KTTVLKDG----QVVN   72 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~-----------------~~~~~~~~~t~~~~~---~~~~~~~~----~~~~   72 (277)
                      ...+.|+++|+.++|||||||++++.-+.                 .++.+..-.|+....   ........    .+++
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45589999999999999999999998221                 112222224444444   22222233    5799


Q ss_pred             EEeCCCCCCCCCCchHHHHH--------------HHHH----HhhcC-CCccEEEEEE-eCC------CCCCHHHHHHHH
Q 023779           73 VIDTPGLFDLSAGSEFVGKE--------------IVKC----LGMAK-DGIHAFLVVF-SVT------NRFSQEEETAVH  126 (277)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~--------------~~~~----~~~~~-~~~~~~l~v~-d~~------~~~~~~~~~~~~  126 (277)
                      ++||+|+.+.......-...              |..+    ..... .+++..|+|. |.+      ..+...+.++++
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999998755332211111              0011    01112 3678888888 664      356677788888


Q ss_pred             HHHHHhCcCccCcEEEEEeCCCCC
Q 023779          127 RLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      .+++. +.    |+++|+|+.|-.
T Consensus       175 eLk~~-~k----PfiivlN~~dp~  193 (492)
T TIGR02836       175 ELKEL-NK----PFIILLNSTHPY  193 (492)
T ss_pred             HHHhc-CC----CEEEEEECcCCC
Confidence            88875 43    999999999944

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.37  E-value=6.8e-11  Score=100.62  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC----------------ceEEEEeCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS   83 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~   83 (277)
                      .+|+|+|.+|+|||||+|+|++... ..+. ...+|...........+.                ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~n-ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAAN-YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eecc-cccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6899999999999999999998773 2211 122332322211111111                258999999998654


Q ss_pred             CCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .....+...+...+    +.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i----~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANI----REVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence            43344555555444    4669999999984

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.36  E-value=8.8e-12  Score=100.14  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|+.|+||||..+.|.+... +......+.|.+....+........+.+||+||..+......      .......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence            689999999999999999996653 333445567777776665545566899999999876432210      0111123


Q ss_pred             CCCccEEEEEEeCC-CCCCHHHHHH---HHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          101 KDGIHAFLVVFSVT-NRFSQEEETA---VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       101 ~~~~~~~l~v~d~~-~~~~~~~~~~---~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      +.++++++||+|+. ..+...-...   ++.+.+. .+++  .+.|++.|+|.+.+  ....+..+. ..+.+.+.+...
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~--~~r~~~~~~-~~~~i~~~~~~~  147 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE--DEREEIFRD-IQQRIRDELEDL  147 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H--HHHHHHHHH-HHHHHHHHHHHT
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH--HHHHHHHHH-HHHHHHHHhhhc
Confidence            46779999999998 4433322222   3333332 3333  89999999998865  222222222 111144444433


Q ss_pred             C-CeEEEEeCCCcc
Q 023779          177 D-NRCVLFDNKTKD  189 (277)
Q Consensus       177 ~-~~~~~~~~~~~~  189 (277)
                      + .....|...++.
T Consensus       148 ~~~~~~~~~TSI~D  161 (232)
T PF04670_consen  148 GIEDITFFLTSIWD  161 (232)
T ss_dssp             T-TSEEEEEE-TTS
T ss_pred             cccceEEEeccCcC
Confidence            3 246666666554

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.35  E-value=7.1e-11  Score=99.71  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEE--EEEe---------------------eeCCceEEEEeCCC
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTV---------------------LKDGQVVNVIDTPG   78 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~---------------------~~~~~~~~liDtpG   78 (277)
                      |+++|.+|+|||||+|+|++... .....+. .|.....  ....                     ......+.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            68999999999999999998764 2221111 2212111  1110                     01224689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      +.........+...+...    ++.+|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence            965432223334444444    35669999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.9e-11  Score=102.15  Aligned_cols=137  Identities=18%  Similarity=0.267  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------------------------CCcceeeEEEEEe
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------------------------SGVTKTCEMKTTV   64 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---------------------------------~~~t~~~~~~~~~   64 (277)
                      +..+++++|+..+|||||+-.|+    +..|...                                 .+.|.......+.
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLl----y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe   81 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLL----YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE   81 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhH----HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence            34899999999999999998886    2222111                                 1566666555554


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCcc
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVF  137 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~  137 (277)
                       .+...++++|+||.-           .+..-.......+|+.++|+|+...       ..+.++..+ +|....|-.  
T Consensus        82 -t~k~~~tIiDaPGHr-----------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~--  146 (428)
T COG5256          82 -TDKYNFTIIDAPGHR-----------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIK--  146 (428)
T ss_pred             -cCCceEEEeeCCchH-----------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCc--
Confidence             456679999999933           2333333344678999999999843       333344443 444455643  


Q ss_pred             CcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       138 ~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                       .+||++||+|...-....+++....     +..+++.+|..
T Consensus       147 -~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~  182 (428)
T COG5256         147 -QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN  182 (428)
T ss_pred             -eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence             8999999999886544677777776     77788888843

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.32  E-value=5.2e-12  Score=97.16  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEE--eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ...|+|+|++|+|||+|+..|.......+      .|....-...  ....+..+.+||+||....       ...+...
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T------~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rl-------r~~~~~~   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT------VTSMENNIAYNVNNSKGKKLRLVDIPGHPRL-------RSKLLDE   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEETT-HCC-------CHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCe------eccccCCceEEeecCCCCEEEEEECCCcHHH-------HHHHHHh
Confidence            36799999999999999999985533221      1111111111  1124567999999997642       2233332


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~  152 (277)
                      +. +.+.+-+++||+|.+ .+...-....+.|..++    ......|++|+.||.|....
T Consensus        70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            11 234579999999987 33222233333333322    11223499999999998754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=3.1e-10  Score=101.07  Aligned_cols=131  Identities=21%  Similarity=0.269  Sum_probs=89.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-----------------------------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------------------------------   62 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-----------------------------------   62 (277)
                      ..-+|+++|.+++||||++|+++-..+.++|..+.+. ..+.+..                                   
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~Tn-cF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTN-CFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccce-eeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            3478999999999999999999988887777544310 0001100                                   


Q ss_pred             ------EeeeCC-------ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023779           63 ------TVLKDG-------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP  129 (277)
Q Consensus        63 ------~~~~~~-------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~  129 (277)
                            ...++.       ..+.++|.||+.-.        .+...++......+|+++||+++.+.++..++.++....
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs  258 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS  258 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence                  111221       24789999998853        244455555567889999999999888888888777665


Q ss_pred             HHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779          130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus       130 ~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                      +-     +.+++|+.||||....+..-.++.+.
T Consensus       259 ~~-----KpniFIlnnkwDasase~ec~e~V~~  286 (749)
T KOG0448|consen  259 EE-----KPNIFILNNKWDASASEPECKEDVLK  286 (749)
T ss_pred             cc-----CCcEEEEechhhhhcccHHHHHHHHH
Confidence            53     23788999999977653233344443

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.31  E-value=7.8e-11  Score=92.81  Aligned_cols=161  Identities=23%  Similarity=0.223  Sum_probs=99.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|.+|+|||+|...+.+..+....    .+|....+......++.  .+.|+||+|..           ++...
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y----~ptied~y~k~~~v~~~~~~l~ilDt~g~~-----------~~~~~   67 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY----DPTIEDSYRKELTVDGEVCMLEILDTAGQE-----------EFSAM   67 (196)
T ss_pred             ceEEEEECCCCCCcchheeeeccccccccc----CCCccccceEEEEECCEEEEEEEEcCCCcc-----------cChHH
Confidence            378999999999999999988876653321    22222222222223443  47799999933           33344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+....|+|++|++++++-+..+ ..+.+.+....+. ..-|+++|+||+|....-....++         -+.+...
T Consensus        68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~  137 (196)
T KOG0395|consen   68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS  137 (196)
T ss_pred             HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence            4445677799999999996655555 3444444333232 224999999999976520011111         1222233


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ++|++...++++++..+.+.+..
T Consensus       138 ~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  138 WGCAFI------ETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence            333333      56777778999999988887765

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.30  E-value=1.1e-11  Score=89.42  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=94.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ...+.++|-.++|||||+|.+.......    ...+|+-....... .....+.+||.||-.           .+.....
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~t-kgnvtiklwD~gGq~-----------rfrsmWe   83 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVT-KGNVTIKLWDLGGQP-----------RFRSMWE   83 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEec-cCceEEEEEecCCCc-----------cHHHHHH
Confidence            4678999999999999999987543311    12334444444332 344568899999933           4555556


Q ss_pred             hcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++++.++++||+|+..  .++..-.+...++.+..-  ...|++|+.||.|..+.  -.-.+.+..     + .+... 
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~A--L~~~~li~r-----m-gL~si-  152 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGA--LSKIALIER-----M-GLSSI-  152 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhh--cCCcEEEecccccCccc--ccHHHHHHH-----h-Ccccc-
Confidence            67899999999999982  333322222223322211  11499999999997654  222222221     0 01111 


Q ss_pred             CCe-EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~-~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      -+| ++.|    ..|+++..+++.+++++.+.-
T Consensus       153 tdREvcC~----siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  153 TDREVCCF----SISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             ccceEEEE----EEEEcCCccHHHHHHHHHHHh
Confidence            122 2222    236677789999999887654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=2e-11  Score=92.13  Aligned_cols=164  Identities=13%  Similarity=0.046  Sum_probs=105.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ..+..+|+++|--|+||||+++.|--..+..+     .+|.-..+..+. +.+..+.+||.-|..           .+..
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~-----------k~R~   76 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQE-----------KLRP   76 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCc-----------cccc
Confidence            45668999999999999999998864443222     445555555544 678899999999943           3455


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      ....+++..++++||+|.+++..-.+  ......+...--  ...|+++..||.|....  -+..++-+.      -.+-
T Consensus        77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~a--ls~~ei~~~------L~l~  146 (181)
T KOG0070|consen   77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGA--LSAAEITNK------LGLH  146 (181)
T ss_pred             chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhcccc--CCHHHHHhH------hhhh
Confidence            56667889999999999983322222  222222322211  22489999999997765  443333221      1222


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+...++..    .+.|..+.++.+-++++...+..
T Consensus       147 ~l~~~~w~iq----~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  147 SLRSRNWHIQ----STCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             ccCCCCcEEe----eccccccccHHHHHHHHHHHHhc
Confidence            3333444442    33555678999999998887653

>PTZ00416 elongation factor 2; Provisional

Probab=99.29  E-value=2.4e-11  Score=115.29  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=78.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccC----------CCCCcceeeEEEEEeeeC----------CceE
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK----ASA----------GSSGVTKTCEMKTTVLKD----------GQVV   71 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~----------~~~~~t~~~~~~~~~~~~----------~~~~   71 (277)
                      .++.++|+++|+.++|||||+++|+...-..    .|.          ...+.|......... +.          +..+
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~~~~~~~~~~~i   94 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLY-YEHDLEDGDDKQPFLI   94 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEE-eecccccccCCCceEE
Confidence            3456899999999999999999998532110    000          001222222112122 22          5569


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      .++||||+.+           +...+..+...+|++++|+|+..++...+...++.+... +    .|+++++||+|..
T Consensus        95 ~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~  157 (836)
T PTZ00416         95 NLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA  157 (836)
T ss_pred             EEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence            9999999765           222233345677999999999977888888777766653 2    2899999999987

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.29  E-value=1.8e-11  Score=94.62  Aligned_cols=165  Identities=19%  Similarity=0.120  Sum_probs=105.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-Cce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQV--VNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~--~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .++++|||..++|||+++-+.+...+ +..   ..+|+...+......+ +..  +.+|||.|-.+.           .+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~---yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr   68 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEE---YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR   68 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcC-ccc---ccCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence            48899999999999999988875543 332   2345554444444453 554  789999996653           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~~  168 (277)
                      .-..+|+..|+||+|+++..+.+..+  ..|+..++..+. .+  |+|+|+||.|+..+  ...-+.+...     ....
T Consensus        69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~v--piiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~  143 (198)
T KOG0393|consen   69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NV--PIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ  143 (198)
T ss_pred             ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CC--CEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence            11347899999999999985555554  566777777663 33  99999999997744  2221122210     1122


Q ss_pred             HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ...+....|..-+.     ++|+....++.++++......
T Consensus       144 g~~lA~~iga~~y~-----EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  144 GLELAKEIGAVKYL-----ECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             HHHHHHHhCcceee-----eehhhhhCCcHHHHHHHHHHH
Confidence            34455555543222     667777777777777665543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.27  E-value=1.6e-11  Score=114.97  Aligned_cols=118  Identities=17%  Similarity=0.281  Sum_probs=75.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--------------ccccCCCCCcceeeEEEE---EeeeCCceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~~~~~liDtpG~~   80 (277)
                      ..++|+++|+.|+|||||+++|+....              +.......+.|.......   ...+.+..+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            458999999999999999999863210              000000122333222111   123567789999999987


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      +..       .....+    +..+|++++|+|+..+....+...+..+... +    .|.++++||+|...
T Consensus        98 ~f~-------~~~~~a----l~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFG-------GDVTRA----MRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N----VKPVLFINKVDRLI  152 (720)
T ss_pred             ccH-------HHHHHH----HHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C----CCEEEEEEChhccc
Confidence            632       223333    3556999999999866666666665554432 2    27789999999764

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK12740 elongation factor G; Reviewed

Probab=99.26  E-value=5.4e-11  Score=111.15  Aligned_cols=111  Identities=23%  Similarity=0.303  Sum_probs=72.0

Q ss_pred             EcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779           25 LGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (277)
Q Consensus        25 vG~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (277)
                      +|+.|+|||||+++|+.....  ..+..              ..+.|......... +.+..+.+|||||..+.      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHH------
Confidence            699999999999999532211  00000              12344444444443 68889999999996531      


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                       .......    +..+|++++|+|++..........+..+... +    .|+++|+||+|....
T Consensus        74 -~~~~~~~----l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -TGEVERA----LRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA  127 (668)
T ss_pred             -HHHHHHH----HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence             1222333    3456999999999866666666666555442 2    289999999997644

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.26  E-value=7.7e-11  Score=112.04  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=78.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc----cC----------CCCCcceeeEEEEEee---------------e
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA----SA----------GSSGVTKTCEMKTTVL---------------K   66 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~----~~----------~~~~~t~~~~~~~~~~---------------~   66 (277)
                      ..+.++|+|+|+.++|||||+++|+...-.-.    +.          ...+.|..........               .
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            34568999999999999999999974331100    00          0112333322222221               1


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .+..++++||||+.++       ..++..+    ...+|+.++|+|+..++...++..++.+... +    .|+++++||
T Consensus        96 ~~~~inliDtPGh~dF-------~~e~~~a----l~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~----~p~i~~iNK  159 (843)
T PLN00116         96 NEYLINLIDSPGHVDF-------SSEVTAA----LRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNK  159 (843)
T ss_pred             CceEEEEECCCCHHHH-------HHHHHHH----HhhcCEEEEEEECCCCCcccHHHHHHHHHHC-C----CCEEEEEEC
Confidence            2566899999997642       2233333    3556999999999988887787777766543 2    289999999


Q ss_pred             CCCC
Q 023779          147 GDDL  150 (277)
Q Consensus       147 ~D~~  150 (277)
                      +|..
T Consensus       160 ~D~~  163 (843)
T PLN00116        160 MDRC  163 (843)
T ss_pred             Cccc
Confidence            9987

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.24  E-value=7.1e-11  Score=94.45  Aligned_cols=132  Identities=17%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH--HH-HHhCcCccCcEEEEEe
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR--LP-NLFGKNVFDYMIVVFT  145 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~ivv~n  145 (277)
                      ..+.+|||||......+... +.-+...+...  .+-+++||+|.. +-+......-++  .+ -++...  .|+|+++|
T Consensus       116 ~~~~liDTPGQIE~FtWSAs-GsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktk--lp~ivvfN  189 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSAS-GSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTK--LPFIVVFN  189 (366)
T ss_pred             cCEEEEcCCCceEEEEecCC-ccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhcc--CCeEEEEe
Confidence            34889999997644332211 12233344333  568899999987 333322211122  12 222333  49999999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEE------------E---eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL------------F---DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      |.|....  .-..+++..  -..+++.+......|..            |   -.....|+..+.|+++++..+...+.+
T Consensus       190 K~Dv~d~--~fa~eWm~D--fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  190 KTDVSDS--EFALEWMTD--FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             ccccccc--HHHHHHHHH--HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            9998776  444444433  01122222210100000            0   011234566677788888877777765

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.2e-10  Score=80.74  Aligned_cols=155  Identities=16%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .+.+++|+-|+|||.|+..++...+...  .+....+......+. +-....+.+|||.|           .+++.....
T Consensus        12 fkyiiigdmgvgkscllhqftekkfmad--cphtigvefgtriievsgqkiklqiwdtag-----------qerfravtr   78 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR   78 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHHhhc--CCcccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence            6788999999999999999986664222  122222222222222 12234588999999           345666667


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .+++++.+.|.|+|+..+-+-.- ..|+.-.+.+..+.  .-++++.||.|.....+...++         .+.+.+..|
T Consensus        79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faeeng  147 (215)
T KOG0097|consen   79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEENG  147 (215)
T ss_pred             HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhhcC
Confidence            78999999999999984333222 23333334433332  2466778999965331233332         233444433


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i  204 (277)
                      --+.      ++|++.+.++++.+-..
T Consensus       148 l~fl------e~saktg~nvedafle~  168 (215)
T KOG0097|consen  148 LMFL------EASAKTGQNVEDAFLET  168 (215)
T ss_pred             eEEE------EecccccCcHHHHHHHH
Confidence            3332      45777788877654433

>cd01900 YchF YchF subfamily

Probab=99.23  E-value=7.4e-11  Score=97.29  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=56.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCCCC
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSA   84 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~   84 (277)
                      |+|+|.+|+|||||+|+|++... ..+. ...+|......... +.+                 ..+.++||||+.....
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n-~pftTi~p~~g~v~-v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~   77 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAAN-YPFCTIEPNVGIVP-VPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   77 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-cccc-ccccchhceeeeEE-eccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence            58999999999999999999875 2221 12233232222221 222                 1489999999987554


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ....+...+...+    +.+|++++|+|+.
T Consensus        78 ~~~glg~~fL~~i----~~~D~li~VV~~f  103 (274)
T cd01900          78 KGEGLGNKFLSHI----REVDAIAHVVRCF  103 (274)
T ss_pred             hhhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence            4445555555444    4569999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.23  E-value=1e-10  Score=100.73  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF   80 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~   80 (277)
                      ....+|+|||.+|+|||||+|+|++.... .+. ...+|...........+                ..++.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v~n-~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP-AEN-FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCccc-ccC-CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            35579999999999999999999987642 221 12233233222222111                2358999999998


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ........+...+...+    +.+|++++|+|..
T Consensus        97 ~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHI----RAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence            65443444555555544    4569999999984

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.22  E-value=4.7e-11  Score=85.70  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      +-++++..++|+++|-.++|||||++.|.++++...     .+|.-.....+......++++||.-|-           +
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGq-----------r   73 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQ-----------R   73 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCc-----------c
Confidence            346678889999999999999999999998886222     223333333344334478999999883           3


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~  160 (277)
                      .+..+...+|.++|.++||+|...  ++........+++.+.--  ...|+.|.-||-|.+..  ...++.
T Consensus        74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eei  140 (185)
T KOG0074|consen   74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEI  140 (185)
T ss_pred             ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHH
Confidence            466677778899999999999662  222222333333333211  22489999999998866  555544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.22  E-value=1.3e-09  Score=92.19  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHhCcCccCcEEEEEeC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ivv~nk  146 (277)
                      +..+.|+||+|......       .   ..    ..+|.++++.+..   ++.+...+.. +.+.       .-++|+||
T Consensus       148 g~d~viieT~Gv~qs~~-------~---i~----~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK  203 (332)
T PRK09435        148 GYDVILVETVGVGQSET-------A---VA----GMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK  203 (332)
T ss_pred             CCCEEEEECCCCccchh-------H---HH----HhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence            46789999999885321       1   11    2359999997632   1233322221 2221       34899999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +|....  .........     ++..+.....+.... .+....|+.++.++++|++.|...++.
T Consensus       204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            998765  333334333     444443322110001 122346778889999999999998874

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.20  E-value=9.3e-11  Score=110.17  Aligned_cols=119  Identities=18%  Similarity=0.316  Sum_probs=76.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCC----------CCCcceeeEEEEEee-e--CCceEEEEeCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK----ASAG----------SSGVTKTCEMKTTVL-K--DGQVVNVIDTPGL   79 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~~----------~~~~t~~~~~~~~~~-~--~~~~~~liDtpG~   79 (277)
                      .+.++|+++|+.++|||||+.+|+...-..    .|..          ..+.|.......... +  .+..+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            355789999999999999999997322100    0000          012232222222211 1  3567899999998


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      .+.       ..++..++    ..+|++++|+|+..+....+...+..+... +.    |.++++||+|...
T Consensus        98 ~df-------~~~~~~~l----~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDF-------GGDVTRAM----RAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI  153 (731)
T ss_pred             cCh-------HHHHHHHH----HhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence            863       23344443    455999999999877777777777765443 32    6789999999763

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=7e-09  Score=86.46  Aligned_cols=131  Identities=17%  Similarity=0.250  Sum_probs=84.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-----------------------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------------------   67 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------------------   67 (277)
                      ..+.-|+++|+...||||||+.|+..+++...+++.+.|............                             
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            356789999999999999999999988764444444444333322100000                             


Q ss_pred             ----------CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCc
Q 023779           68 ----------GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNV  136 (277)
Q Consensus        68 ----------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~  136 (277)
                                -..+++|||||+.+.....-...-.+...+......+|.|++++|+. -.++.+-.+++..++-   .+ 
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E-  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE-  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc-
Confidence                      03589999999987654321111123333333346779999999998 4444444565555543   23 


Q ss_pred             cCcEEEEEeCCCCCCc
Q 023779          137 FDYMIVVFTGGDDLED  152 (277)
Q Consensus       137 ~~~~ivv~nk~D~~~~  152 (277)
                       ..+-||+||.|+...
T Consensus       212 -dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 -DKIRVVLNKADQVDT  226 (532)
T ss_pred             -ceeEEEeccccccCH
Confidence             268899999999877

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.19  E-value=3e-11  Score=90.17  Aligned_cols=160  Identities=16%  Similarity=0.109  Sum_probs=97.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..++++++|..++||||+|.+.+...+ ..+ ......++.-...+. ...+..+.+|||.|           .+++..
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgif-Tkd-ykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDa   84 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKD-YKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDA   84 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhcccc-ccc-cccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHH
Confidence            3458999999999999999999984443 221 111111111111111 11234467999999           345666


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....+|+++.+.++|++.+.+.+.+- ..+-+.+..-++.   .|.++|-||+|.+++  ..+..-.       ...+..
T Consensus        85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved--s~~~~~e-------vE~lak  152 (246)
T KOG4252|consen   85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED--SQMDKGE-------VEGLAK  152 (246)
T ss_pred             HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh--hhcchHH-------HHHHHH
Confidence            66678999999999999987766554 3444555554443   399999999998876  2222111       223334


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..+.|.+.      .|.+...++..++.++..-
T Consensus       153 ~l~~RlyR------tSvked~NV~~vF~YLaeK  179 (246)
T KOG4252|consen  153 KLHKRLYR------TSVKEDFNVMHVFAYLAEK  179 (246)
T ss_pred             Hhhhhhhh------hhhhhhhhhHHHHHHHHHH
Confidence            44444442      3556666777766665443

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=2.4e-11  Score=88.93  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--EEEEeeeC------CceEEEEeCCCCCCCCCCchHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD------GQVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      ++.+.+|++|+|||||+...+...+-..-++..++..+..  ++...-.+      ..++.+|||.|           ++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-----------QE   78 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-----------QE   78 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------HH
Confidence            5678899999999999988775543211122222221111  11110000      12578999999           34


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~  169 (277)
                      ++.......++.+-+||+++|+++.-+..+ ..|+..++-+. ..+  .-++++.||+|....  ..+.+-       ..
T Consensus        79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~--R~Vs~~-------qa  147 (219)
T KOG0081|consen   79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQ--RVVSED-------QA  147 (219)
T ss_pred             HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhh--hhhhHH-------HH
Confidence            555555566788899999999984433333 44555554431 222  158889999996543  222211       14


Q ss_pred             HHHHhhcCCeEEE
Q 023779          170 KEILQLCDNRCVL  182 (277)
Q Consensus       170 ~~~~~~~~~~~~~  182 (277)
                      ..+..+.+.+|+.
T Consensus       148 ~~La~kyglPYfE  160 (219)
T KOG0081|consen  148 AALADKYGLPYFE  160 (219)
T ss_pred             HHHHHHhCCCeee
Confidence            4577788888875

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=5.1e-10  Score=95.42  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .|+..|+--.|||||+.+++|...-. ......+.|.+..++... ..+..+.|||.||+.+           +...+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcHH-----------HHHHHHh
Confidence            58899999999999999999865311 123456788888887655 4556899999999664           3344444


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      .....|..++|+++..++...+.+.+..+.. +|-.   +.+||+||+|....  ..+++....        ++....  
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~--  133 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS--  133 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence            5567899999999977888888777666655 5654   78999999998866  555544433        333323  


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                       ..-.+....|+..+.++++|.+.|.++.
T Consensus       134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         134 -LANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             -cccccccccccccCCCHHHHHHHHHHhh
Confidence             2222334668888899999999999987

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.18  E-value=9.3e-10  Score=94.14  Aligned_cols=170  Identities=16%  Similarity=0.314  Sum_probs=104.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      -++|+||.+...|||||+..|+.+.. |...             .-..+.|.-..-. ...|++..+.++||||.-|+.+
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnT-av~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNT-AVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccc-eeecCCeEEEEecCCCcCCccc
Confidence            37899999999999999999985431 1111             0011333322222 3448899999999999988755


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                             +..+.+...    |.+++++|+..+.-+..+..++...+. |-    +.|||+||+|....   ..+..+.. 
T Consensus        84 -------EVERvl~MV----DgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~A---rp~~Vvd~-  143 (603)
T COG1217          84 -------EVERVLSMV----DGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDA---RPDEVVDE-  143 (603)
T ss_pred             -------hhhhhhhhc----ceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCC---CHHHHHHH-
Confidence                   555555444    999999999966666676666655543 22    57889999997643   33333333 


Q ss_pred             CCchHHHHHhhcCC------eEEEEeC-CC----cccccChhHHHHHHHHHHHHHhhcCC
Q 023779          165 CPKPLKEILQLCDN------RCVLFDN-KT----KDEAKGTEQVRQLLSLVNSVIVQNGG  213 (277)
Q Consensus       165 ~~~~~~~~~~~~~~------~~~~~~~-~~----~~s~~~~~~~~~L~~~i~~~~~~~~~  213 (277)
                          .-.+....+.      ..++|.. ..    ........++..|++.|.+.++...+
T Consensus       144 ----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         144 ----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             ----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence                2223222231      1122211 11    11222335799999999999886543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.17  E-value=2.9e-10  Score=97.48  Aligned_cols=169  Identities=20%  Similarity=0.234  Sum_probs=110.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc-----------cc--cCCCCCcceeeEEEEEeee----CCceEEEEeCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-----------KA--SAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG   78 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~-----------~~--~~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG   78 (277)
                      -.+.++..++.+-..|||||...|+.....           ++  -.-..+.|...+.......    +.+.+.+|||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            345678999999999999999998642210           00  0111255655444433322    235689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~  158 (277)
                      ..|+..       ++.+++.+|    .+.|+|+|+++++...+....-+..+.   +.  -++-|+||+|+...   ..+
T Consensus        86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlAle~---~L--eIiPViNKIDLP~A---dpe  146 (603)
T COG0481          86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLALEN---NL--EIIPVLNKIDLPAA---DPE  146 (603)
T ss_pred             ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHHHHc---Cc--EEEEeeecccCCCC---CHH
Confidence            998653       566777666    788999999988877665554444443   22  58889999996543   444


Q ss_pred             HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCC
Q 023779          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (277)
Q Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~  214 (277)
                      ....+     +..++.....      ....+||+.+-|++++++.|...++...|.
T Consensus       147 rvk~e-----Ie~~iGid~~------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         147 RVKQE-----IEDIIGIDAS------DAVLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             HHHHH-----HHHHhCCCcc------hheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence            44443     4444432211      222458999999999999999998865443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.6e-10  Score=93.23  Aligned_cols=168  Identities=14%  Similarity=0.169  Sum_probs=102.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEee-------------------------eCCceE
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-------------------------KDGQVV   71 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-------------------------~~~~~~   71 (277)
                      ...+|+++|+...|||||..+|+|.-.-. +.....+.|.+.++.....                         .--+.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            34899999999999999999999854311 1111223333332221100                         012468


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKC-LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~  149 (277)
                      .|+|.||.            +...+ +.+...-.|+.++|+.++.++-+ ..++.+- ..+.+|-.   +++|+=||+|.
T Consensus        89 SfVDaPGH------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIigik---~iiIvQNKIDl  152 (415)
T COG5257          89 SFVDAPGH------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIGIK---NIIIVQNKIDL  152 (415)
T ss_pred             EEeeCCch------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhccc---eEEEEecccce
Confidence            89999993            22222 22222345899999999844333 3333333 33445554   89999999998


Q ss_pred             CCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...  +...+..++     ++++++.   -+..-.+..+.||....|++.|++.|.+.++..
T Consensus       153 V~~--E~AlE~y~q-----Ik~FvkG---t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         153 VSR--ERALENYEQ-----IKEFVKG---TVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             ecH--HHHHHHHHH-----HHHHhcc---cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            876  333322232     5555543   222222334678889999999999999998754

>PRK13768 GTPase; Provisional

Probab=99.16  E-value=2.8e-10  Score=93.52  Aligned_cols=132  Identities=18%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~  149 (277)
                      .+.+|||||....... ......+.+.+....  .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            5899999996543211 122333444443322  7999999999744455554443333311100112499999999998


Q ss_pred             CCcccccHHHHhcccCC-------------------chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          150 LEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       150 ~~~~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...  ...+.....-..                   ..+-+.+...+..+    .....|+..+.++++|++.|.+.++.
T Consensus       175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~----~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPV----RVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCC----cEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            866  333332221000                   00111223333211    11234666778999999999988753

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.5e-09  Score=77.91  Aligned_cols=159  Identities=16%  Similarity=0.204  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+.+|-.++||||++..|.-...     ....+|+-..+..+ .+.+..+.+||.-|-           ..+....
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetV-tykN~kfNvwdvGGq-----------d~iRplW   78 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETV-TYKNVKFNVWDVGGQ-----------DKIRPLW   78 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEE-EeeeeEEeeeeccCc-----------hhhhHHH
Confidence            458999999999999999998873221     11233444444443 478888999999883           3577777


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCcc--CcEEEEEeCCCCCCc-ccccHHHHhcccCCchHHHHHh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF--DYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ivv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ..+|++..+++||+|...+ ...+... +.+...++.+.+  -+++|+.||-|.... ....+.++++      +.   .
T Consensus        79 rhYy~gtqglIFV~Dsa~~-dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le------Le---~  147 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADR-DRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE------LE---R  147 (180)
T ss_pred             HhhccCCceEEEEEeccch-hhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc------cc---c
Confidence            8889999999999998844 2233222 223333332211  267788899997654 1133334433      11   1


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .-+.++++.    ++++..++++.+=+.++.+.+
T Consensus       148 ~r~~~W~vq----p~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  148 IRDRNWYVQ----PSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             ccCCccEee----ccccccchhHHHHHHHHHhhc
Confidence            123445442    334445566666666665543

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.14  E-value=4.7e-11  Score=84.81  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779           24 LLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (277)
Q Consensus        24 lvG~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (277)
                      ++|.+++|||.|+=..-... |..+  ++..+...+....... .....+.+|||.|           ++++......+|
T Consensus         2 llgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~-~~kvklqiwdtag-----------qerfrsvt~ayy   68 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAG-----------QERFRSVTHAYY   68 (192)
T ss_pred             ccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccC-CcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence            78999999999875543222 2222  2222222222222211 1223588999999           345555556678


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       102 ~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      +.+|++++++|+.++.+... ..|+..+.+.....+  .++++.||+|....      ..+...   .-+.+.+..+.++
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~d---dg~kla~~y~ipf  137 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRD---DGEKLAEAYGIPF  137 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccc---hHHHHHHHHCCCc
Confidence            99999999999997666655 566667776554444  68899999997643      111110   1223334444333


Q ss_pred             EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .      +.|++.+.+++..+-.|..-+..
T Consensus       138 m------etsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  138 M------ETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             e------eccccccccHhHHHHHHHHHHHH
Confidence            3      56888889998877776655443

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.10  E-value=4.4e-09  Score=84.93  Aligned_cols=94  Identities=20%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +-..|+|+|++++|||||+|.|+|. ..|..+.....+|...-.......  .+..+.++||||+++...........+.
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3478999999999999999999987 356555444444443332222111  3577999999999987664411111122


Q ss_pred             HHHhhcCCCccEEEEEEeCC
Q 023779           95 KCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .....   -.++++|..+..
T Consensus        86 ~l~~l---lss~~i~n~~~~  102 (224)
T cd01851          86 ALATL---LSSVLIYNSWET  102 (224)
T ss_pred             HHHHH---HhCEEEEeccCc
Confidence            11111   238888887765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2.8e-10  Score=84.78  Aligned_cols=165  Identities=17%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-C--CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-A--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..|+|+|.-++|||||+.++-....-..+ .  +...+|+.....++. .....+.+||.-|            ++..++
T Consensus        18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgG------------Qe~lrS   84 (197)
T KOG0076|consen   18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGG------------QESLRS   84 (197)
T ss_pred             hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCC------------hHHHHH
Confidence            67999999999999999876432211111 1  222334434434333 4577899999888            233333


Q ss_pred             H-hhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHH-hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           97 L-GMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        97 ~-~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~-~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      + ..+|..+|+++|++|+..  ++... ...++.+... .-.++  |++++.||-|+...  ....+.-..     +. .
T Consensus        85 lw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg~--p~L~lankqd~q~~--~~~~El~~~-----~~-~  153 (197)
T KOG0076|consen   85 LWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEGA--PVLVLANKQDLQNA--MEAAELDGV-----FG-L  153 (197)
T ss_pred             HHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcCC--chhhhcchhhhhhh--hhHHHHHHH-----hh-h
Confidence            3 345677899999999983  33222 2222322211 11222  99999999997665  444433322     22 2


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .+..+.|...|.+   .|+..+.++.+-..++...++.+
T Consensus       154 ~e~~~~rd~~~~p---vSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  154 AELIPRRDNPFQP---VSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcCCccCcccc---chhhhcccHHHHHHHHHHHHhhc
Confidence            3444555555544   47777888898888888887765

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=99.09  E-value=5.2e-09  Score=91.24  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--------------------------------
Q 023779            5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--------------------------------   52 (277)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~--------------------------------   52 (277)
                      .++.+|.+....   ++|++||+-.+||||.+.+|.....|+.|.+..                                
T Consensus       297 ~YD~sYnt~DhL---PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE  373 (980)
T KOG0447|consen  297 DYDASYNTQDHL---PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE  373 (980)
T ss_pred             cccccccccccC---ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccch
Confidence            356666555544   899999999999999999998877777663321                                


Q ss_pred             --------------------CcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCc--hHHHHHHHHHHhhcCCCccEE
Q 023779           53 --------------------GVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS--EFVGKEIVKCLGMAKDGIHAF  107 (277)
Q Consensus        53 --------------------~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  107 (277)
                                          +.|+...+.... ..|   ..++++|.||...+...+  .+....+......+..+|++|
T Consensus       374 ~DLq~LR~e~E~RMr~sVr~GkTVSnEvIslt-VKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI  452 (980)
T KOG0447|consen  374 EDLAALRHEIELRMRKNVKEGCTVSPETISLN-VKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI  452 (980)
T ss_pred             hHHHHHHHHHHHHHHhcccCCcccccceEEEe-ecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE
Confidence                                444444443332 222   357899999998766543  334556666667778899999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          108 LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       108 l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ++|+.-. ....+-...-.++..+ . +.-+..|+|+||+|+.+.
T Consensus       453 ILCIQDG-SVDAERSnVTDLVsq~-D-P~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  453 ILCIQDG-SVDAERSIVTDLVSQM-D-PHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             EEEeccC-CcchhhhhHHHHHHhc-C-CCCCeeEEEEeecchhhh
Confidence            9998876 5544433333344433 1 122479999999998765

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.08  E-value=2e-09  Score=89.17  Aligned_cols=141  Identities=12%  Similarity=0.176  Sum_probs=97.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC--cc---------c---cCC-----------------CCCcceeeEEEEEee
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FK---------A---SAG-----------------SSGVTKTCEMKTTVL   65 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~--~~---------~---~~~-----------------~~~~t~~~~~~~~~~   65 (277)
                      ...++.+-+|...-||||||-.|+-...  +.         +   +..                 ..+.|.+..+..+. 
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-   82 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-   82 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-
Confidence            3458999999999999999999873321  00         0   000                 01667666665444 


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      -..+.+.+.||||..           ++.+-+.....-+|+.++++|+..++-...++ -..+..++|-.   ++++.+|
T Consensus        83 T~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVN  147 (431)
T COG2895          83 TEKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVN  147 (431)
T ss_pred             cccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEe
Confidence            467789999999943           44444444455679999999998555444433 35666667765   8999999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      |+|+..=..+.++.+...     +..+.+..+.
T Consensus       148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~  175 (431)
T COG2895         148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGL  175 (431)
T ss_pred             eecccccCHHHHHHHHHH-----HHHHHHHcCC
Confidence            999886444677777776     7777777774

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.08  E-value=3.9e-10  Score=92.29  Aligned_cols=161  Identities=19%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ...|++||-+|+||||||++|++....+...-.  .|.+..........|..+.+.||.||.+.-  +-.+...|...+.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLF--ATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLe  253 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF--ATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLE  253 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhh--eeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHH
Confidence            378999999999999999999977664443211  121111111223578889999999998521  1222222332222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC---ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                       -...+|+++.|+|++++..... ...+..+..+ |-.   ....++=|=||.|..+.       ++..          +
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~-------~~e~----------E  314 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEED-------EVEE----------E  314 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccc-------cCcc----------c
Confidence             1356799999999995544444 4556666654 321   11234455677774433       2222          0


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .        ++....|+.++.+++++++.+...+..
T Consensus       315 ~--------n~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  315 K--------NLDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             c--------CCccccccccCccHHHHHHHHHHHhhh
Confidence            0        112245788889999999998877653

>cd01858 NGP_1 NGP-1

Probab=99.06  E-value=5e-10  Score=85.55  Aligned_cols=57  Identities=26%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ...+|+++|.+|+|||||+|+|.+......+..+ +.|......    ..+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYI----TLMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEE----EcCCCEEEEECcCC
Confidence            3478999999999999999999987764444322 233333222    12345889999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1e-08  Score=86.31  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE--EE---------------eeeCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TT---------------VLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~---------------~~~~~~~~~liDtpG~~~   81 (277)
                      .++++|||.||||||||+|+|+.... ..... +-+|......  ..               ...-...+.|+|.+|+-.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a-~~aNY-PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGA-EIANY-PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCc-cccCC-CcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            37899999999999999999997663 21111 1122221111  10               001112478999999987


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .....+-++.++...++    .+|+++.|++..
T Consensus        80 GAs~GeGLGNkFL~~IR----evdaI~hVVr~f  108 (372)
T COG0012          80 GASKGEGLGNKFLDNIR----EVDAIIHVVRCF  108 (372)
T ss_pred             CcccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence            77666777777777765    559999999987

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1e-09  Score=96.64  Aligned_cols=213  Identities=16%  Similarity=0.186  Sum_probs=129.4

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--------------------CCcceeeEEEEEeeeCCceEEE
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------------SGVTKTCEMKTTVLKDGQVVNV   73 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~l   73 (277)
                      .|.++-++|+++.+-.+||||+-+.++-    ..|.+.                    .+.|....... ..|....+.+
T Consensus        34 ~~~~k~RNIgi~AhidsgKTT~tEr~Ly----y~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~-~~w~~~~iNi  108 (721)
T KOG0465|consen   34 IPLNKIRNIGISAHIDAGKTTLTERMLY----YTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATY-FTWRDYRINI  108 (721)
T ss_pred             CchhhhcccceEEEEecCCceeeheeee----ecceeeeccccccCceeeehHHHHHhcCceeeeceee-eeeccceeEE
Confidence            3445678999999999999999988762    121111                    14444444443 4478899999


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                      |||||..|+..       ++.+++.    -.|+.++|+++-.+........++.++.. +.    |.+..+||+|..+. 
T Consensus       109 IDTPGHvDFT~-------EVeRALr----VlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~v----P~i~FiNKmDRmGa-  171 (721)
T KOG0465|consen  109 IDTPGHVDFTF-------EVERALR----VLDGAVLVLDAVAGVESQTETVWRQMKRY-NV----PRICFINKMDRMGA-  171 (721)
T ss_pred             ecCCCceeEEE-------Eehhhhh----hccCeEEEEEcccceehhhHHHHHHHHhc-CC----CeEEEEehhhhcCC-
Confidence            99999987543       3444443    33887888887767777777777777764 33    89999999998876 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh-hcCC----CCCChHHHHHHHHHH
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV-QNGG----QPYTDELKRGATELR  228 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~  228 (277)
                        ..-..        +..+..+....-.+++-+..... ...++-+|++...-... ++++    ...+.++.+.+.+. 
T Consensus       172 --~~~~~--------l~~i~~kl~~~~a~vqiPig~e~-~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~-  239 (721)
T KOG0465|consen  172 --SPFRT--------LNQIRTKLNHKPAVVQIPIGSES-NFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEK-  239 (721)
T ss_pred             --ChHHH--------HHHHHhhcCCchheeEccccccc-cchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHH-
Confidence              11122        33344444444444444433221 23344444332211111 1111    12466677777766 


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023779          229 DKKAEVDSLKEYSKREISKLMGQMQESYEDRIK  261 (277)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (277)
                       +++.++.+.+.+++..+.+.++.+-+..+..+
T Consensus       240 -R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~  271 (721)
T KOG0465|consen  240 -RQALIETLADVDETLAEMFLEEEEPSAQQLKA  271 (721)
T ss_pred             -HHHHHHHHhhhhHHHHHHHhccCCCCHHHHHH
Confidence             77778878777777777777766654433333

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.05  E-value=1.8e-10  Score=86.94  Aligned_cols=63  Identities=33%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccC-----CCCCccee-eEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-----~~~~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (277)
                      ..+++|+|++|||||||+|+|++......+.     .....|++ .....   . .....|||||||.+....
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~---l-~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP---L-PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE---E-TTSEEEECSHHHHT--GC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe---c-CCCcEEEECCCCCccccc
Confidence            3789999999999999999999875444331     12223333 33222   2 234679999998776543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=6.9e-09  Score=90.87  Aligned_cols=162  Identities=14%  Similarity=0.147  Sum_probs=96.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+++..|+++||+|+||||||.+|.....-. ......+.|       +.....+.++++.+|.  |        ...+.
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT-------vvsgK~RRiTflEcp~--D--------l~~mi  128 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT-------VVSGKTRRITFLECPS--D--------LHQMI  128 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE-------EeecceeEEEEEeChH--H--------HHHHH
Confidence            3455889999999999999999998543211 111112222       2234557799999994  1        12333


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....    -+|++|+++|..-++.-+...++.++..+ |-+   .++-|+||.|....+ ..+......-...+|   .+
T Consensus       129 DvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKrlkhRfW---tE  196 (1077)
T COG5192         129 DVAK----IADLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKRLKHRFW---TE  196 (1077)
T ss_pred             hHHH----hhheeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHHHhhhHH---HH
Confidence            3333    34999999999877877788888888875 443   688899999988652 445444433111222   23


Q ss_pred             hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .|. ...+.+... .........+-.|-..|.-|
T Consensus       197 iyqGaKlFylsgV-~nGRYpDreilnLsRfisVM  229 (1077)
T COG5192         197 IYQGAKLFYLSGV-ENGRYPDREILNLSRFISVM  229 (1077)
T ss_pred             HcCCceEEEeccc-ccCCCCCHHHHHHHHHHhhh
Confidence            333 444443322 22333334555555555544

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.5e-09  Score=93.04  Aligned_cols=142  Identities=20%  Similarity=0.301  Sum_probs=94.4

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCC-----------cccc---------------CCCCCcceeeEEEEEee
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSIL---GRKA-----------FKAS---------------AGSSGVTKTCEMKTTVL   65 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~---~~~~-----------~~~~---------------~~~~~~t~~~~~~~~~~   65 (277)
                      +....+..+++|+..+|||||+..|+   |..-           ...|               ....+.|.......+. 
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-  251 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-  251 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-
Confidence            33456899999999999999998875   2110           0011               1112677777666665 


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCC----C--HHHHHHHHHHHHHhCcCccC
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF----S--QEEETAVHRLPNLFGKNVFD  138 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~----~--~~~~~~~~~l~~~~~~~~~~  138 (277)
                      -....++|+|+||.-++.          ..++ .....+|+.++|+|++ ..|    .  +..+.....++. +|..   
T Consensus       252 s~~~~~tliDaPGhkdFi----------~nmi-~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi~---  316 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFI----------PNMI-SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGIS---  316 (603)
T ss_pred             cCceeEEEecCCCccccc----------hhhh-ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCcc---
Confidence            466789999999966532          2222 2335679999999998 322    2  122444444444 5643   


Q ss_pred             cEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH-hhcC
Q 023779          139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD  177 (277)
Q Consensus       139 ~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~  177 (277)
                      .+||++||+|...-....++++...     +..++ +.||
T Consensus       317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g  351 (603)
T KOG0458|consen  317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG  351 (603)
T ss_pred             eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence            8999999999987654778887777     88877 7777

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.02  E-value=3.2e-09  Score=85.29  Aligned_cols=127  Identities=19%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+....++++|.+|+|||||+|.++..... .++.+..+.|....-+    .-+..++++|.||++-.... .++.+++.
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~-~~~~~d~~  207 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYG-FELPADWD  207 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCC-ccCcchHh
Confidence            455589999999999999999999865532 1222233334333222    34678999999995432211 11122222


Q ss_pred             HHHhhc---CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           95 KCLGMA---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        95 ~~~~~~---~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      .+...+   ....-.+++++|++-++...|...++|+.+.   .+  |+.+|+||+|...+
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK  263 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence            222222   2233456677777768888888888888875   33  89999999997744

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.01  E-value=1e-09  Score=84.76  Aligned_cols=57  Identities=32%  Similarity=0.391  Sum_probs=40.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ...+|+++|.+|+|||||+|+|+|......+.. .+.|.......    .+..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~----~~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH----LDKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE----eCCCEEEEECcCC
Confidence            347999999999999999999999876555432 33444333222    2356889999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=7.2e-09  Score=83.92  Aligned_cols=173  Identities=16%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCC---------cccc-----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKA---------FKAS-----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~---------~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      +.+..+|+.||+...|||||..+|++.-.         +...     .-..+.|....-.... ...+++-.+|+||.-|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH
Confidence            34458999999999999999999874211         0000     0112344433222222 3567899999999654


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                                .+.+.+. .....|..++|+.+..+-.+..+..+-+.++ .|-+   .+++++||+|+..+  ..+-+.+
T Consensus        88 ----------YvKNMIt-gAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelV  150 (394)
T COG0050          88 ----------YVKNMIT-GAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELV  150 (394)
T ss_pred             ----------HHHHHhh-hHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHH
Confidence                      2222222 2235588899998885555566555444444 3543   67788999999986  5555555


Q ss_pred             cccCCchHHHHHhhcCC---eEEEEeCCCc----ccccChhHHHHHHHHHHHHHhh
Q 023779          162 GHECPKPLKEILQLCDN---RCVLFDNKTK----DEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +.    ..++++...+-   ..-.+.....    ..+.-...+.+|++.++.+++.
T Consensus       151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            44    27778877652   1111111100    0111124567777777777664

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=7.9e-09  Score=87.98  Aligned_cols=118  Identities=18%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh--CCCCccccCCC------------------CCcceeeEEEEEeeeCCceEEEEeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAGS------------------SGVTKTCEMKTTVLKDGQVVNVIDTP   77 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~--~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~liDtp   77 (277)
                      +.++.+||.++.+|||||-..|+  |......|...                  .++++...+..+. |.++.++|+|||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDTP   89 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDTP   89 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCCC
Confidence            34789999999999999997764  33332222111                  1455555555544 889999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |..|++.       ...+.+.    -+|..+.|+|+..++.......++. +.+-+-    |++-.+||+|....
T Consensus        90 GHeDFSE-------DTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeV-crlR~i----PI~TFiNKlDR~~r  148 (528)
T COG4108          90 GHEDFSE-------DTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEV-CRLRDI----PIFTFINKLDREGR  148 (528)
T ss_pred             Cccccch-------hHHHHHH----hhheeeEEEecccCccHHHHHHHHH-HhhcCC----ceEEEeeccccccC
Confidence            9988643       2223332    2399999999987777776665543 333233    99999999998766

>PTZ00099 rab6; Provisional

Probab=99.00  E-value=1.4e-08  Score=79.04  Aligned_cols=114  Identities=19%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      ..+.||||||..           .+......++.++|++|+|+|++.+.+... ..++..+....+..  .|++||+||+
T Consensus        29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~   95 (176)
T PTZ00099         29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT   95 (176)
T ss_pred             EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence            458899999943           333344456789999999999984333222 23444444433333  3889999999


Q ss_pred             CCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      |.........++         ...+....+..++      ++|++.+.++.++++.|.+.++.
T Consensus        96 DL~~~~~v~~~e---------~~~~~~~~~~~~~------e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         96 DLGDLRKVTYEE---------GMQKAQEYNTMFH------ETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ccccccCCCHHH---------HHHHHHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence            975320011111         1222333333332      56888999999999999988865

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.97  E-value=6e-08  Score=81.92  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|+|++|+|||||++.|.+
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.4e-07  Score=76.03  Aligned_cols=136  Identities=17%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEE--EEEe-eeCCceEEEEeCCCCCCCCCCch-------
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEM--KTTV-LKDGQVVNVIDTPGLFDLSAGSE-------   87 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~--~~~~-~~~~~~~~liDtpG~~~~~~~~~-------   87 (277)
                      ..+|+-||.+|.|||||+.+|++..+ .+.++ ..-+++....  +... +.-.-.++++||.||+|-...++       
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            37899999999999999999997764 22222 2222222221  1111 00123589999999998654332       


Q ss_pred             HHHHHHHHHH----------hh-cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc
Q 023779           88 FVGKEIVKCL----------GM-AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK  155 (277)
Q Consensus        88 ~~~~~~~~~~----------~~-~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~  155 (277)
                      .+..++..++          .. ....+|+.||.+..+ +++...+...++.+..    .  .++|-|+-|.|.+..  .
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----k--VNIIPvIAKaDtisK--~  192 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----K--VNIIPVIAKADTISK--E  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----h--hhhHHHHHHhhhhhH--H
Confidence            1222222222          11 135689999998887 5666666555444433    2  278888899998877  5


Q ss_pred             cHHHHhcc
Q 023779          156 TLEDFLGH  163 (277)
Q Consensus       156 ~l~~~l~~  163 (277)
                      .+..|...
T Consensus       193 eL~~FK~k  200 (406)
T KOG3859|consen  193 ELKRFKIK  200 (406)
T ss_pred             HHHHHHHH
Confidence            66555444

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=3.5e-08  Score=81.72  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=97.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEEEEEeeeCC--------ceEEEEeCCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVLKDG--------QVVNVIDTPGLFDLSAG   85 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~   85 (277)
                      ..+++++|+..+|||||..+|....   .|+..  ....+.|.+.+........+        -+++++|+||...    
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----   82 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----   82 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence            3899999999999999999996322   12211  11234444444443332222        3469999999543    


Q ss_pred             chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc--cccHHHHhcc
Q 023779           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGH  163 (277)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~--~~~l~~~l~~  163 (277)
                             +.+.+.....-.|..++|+|+..+......+.+-.-... .+    ..+||+||.|....+  ...++..-..
T Consensus        83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-c~----klvvvinkid~lpE~qr~ski~k~~kk  150 (522)
T KOG0461|consen   83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-CK----KLVVVINKIDVLPENQRASKIEKSAKK  150 (522)
T ss_pred             -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-cc----ceEEEEeccccccchhhhhHHHHHHHH
Confidence                   333333334556999999999855555554444333333 33    689999999987541  1233333332


Q ss_pred             cCCchHHHHHhhcC----CeEEEEeCCCcccccCh----hHHHHHHHHHHHHHhh
Q 023779          164 ECPKPLKEILQLCD----NRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       164 ~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~----~~~~~L~~~i~~~~~~  210 (277)
                           +++-++..+    .+++.      .|+..+    ..+.+|.+.+...+.+
T Consensus       151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhcC
Confidence                 444445443    22332      233334    7788888888776643

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.96  E-value=2.5e-09  Score=80.14  Aligned_cols=59  Identities=31%  Similarity=0.463  Sum_probs=39.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      ....+++++|.+|+|||||+|+|++........ ..+.|.....  .. .+ ..+.+|||||+.
T Consensus        81 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~--~~-~~-~~~~i~DtpG~~  139 (141)
T cd01857          81 KENATIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQT--IF-LT-PTITLCDCPGLV  139 (141)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEE--EE-eC-CCEEEEECCCcC
Confidence            333489999999999999999999877543222 2233333222  11 22 368999999986

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.95  E-value=1.3e-08  Score=97.39  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             cHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           31 GKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        31 GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      +||||+.+|.+..+...  -..+.|...+.+.+.....                 ..+.||||||..+           +
T Consensus       473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F  539 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F  539 (1049)
T ss_pred             ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence            39999999998887433  2456677766655432111                 1279999999543           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      .......+..+|++++|+|++.++...+...+..+... +    .|+++++||+|...
T Consensus       540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K----TPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence            22223345678999999999877777777777766653 3    28999999999763

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.94  E-value=3.6e-07  Score=79.79  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCCCccc--cCCCC---------CcceeeEEEEEee---------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKA--SAGSS---------GVTKTCEMKTTVL---------------   65 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~--~~~~~---------~~t~~~~~~~~~~---------------   65 (277)
                      ++..|+++|++|+||||++..|.      |..+.-.  .....         .......++....               
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            34789999999999999999986      3332111  01000         0000011111000               


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                       ..+..+.||||||...   .+..+..++......  ..++.+++|+|+..+  .......+.+.+..     .+.-+|+
T Consensus       179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il  246 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII  246 (429)
T ss_pred             HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence             0256789999999764   344555566655433  367899999998632  22233334443322     2678999


Q ss_pred             eCCCCCCc
Q 023779          145 TGGDDLED  152 (277)
Q Consensus       145 nk~D~~~~  152 (277)
                      ||+|....
T Consensus       247 TKlD~~ar  254 (429)
T TIGR01425       247 TKLDGHAK  254 (429)
T ss_pred             ECccCCCC
Confidence            99997755

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=6.4e-09  Score=87.93  Aligned_cols=156  Identities=18%  Similarity=0.226  Sum_probs=101.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC--CccccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK--AFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      +-++|+++.+..+||||.-..|+--.  .-..|..              ..+.|.......+ .|.|+.+.+|||||..|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-dwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-DWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec-ccccceEeeecCCCcce
Confidence            44789999999999999998875111  0001111              1245555544444 48999999999999988


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                      +..       ++.+++.-.    |+++.|+|++.+........|+...+. .    .|.++.+||+|+...   .++.. 
T Consensus       115 f~l-------everclrvl----dgavav~dasagve~qtltvwrqadk~-~----ip~~~finkmdk~~a---nfe~a-  174 (753)
T KOG0464|consen  115 FRL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADKF-K----IPAHCFINKMDKLAA---NFENA-  174 (753)
T ss_pred             EEE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhcccc-C----Cchhhhhhhhhhhhh---hhhhH-
Confidence            643       455555433    999999999988777776666655442 2    388999999998765   33333 


Q ss_pred             cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHH
Q 023779          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL  201 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~  201 (277)
                             ...+-++.+.+.+.+.-+.....--+.++-+++
T Consensus       175 -------vdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil  207 (753)
T KOG0464|consen  175 -------VDSIEEKLGAKALKLQLPIGEAKGFNKGFLDIL  207 (753)
T ss_pred             -------HHHHHHHhCCceEEEEecccccccccchHHHHH
Confidence                   445557778777666655543322224444444

>cd01855 YqeH YqeH

Probab=98.92  E-value=1.8e-09  Score=85.15  Aligned_cols=57  Identities=28%  Similarity=0.326  Sum_probs=37.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ..+++++|.+|+|||||+|+|++.....      ...+.. +.|........    +..+.||||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            4689999999999999999999865322      122222 33333322222    225799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.92  E-value=3.6e-09  Score=80.59  Aligned_cols=57  Identities=28%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ...+++++|.+|+|||||+|+|++......+.  ...|+..... .  ..+..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~--~~~~t~~~~~-~--~~~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN--VPGTTTSQQE-V--KLDNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccC--CCCcccceEE-E--EecCCEEEEECCCC
Confidence            45889999999999999999999876533322  2233333222 1  12356899999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.91  E-value=2e-08  Score=79.64  Aligned_cols=88  Identities=20%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      -+|+++|.+.+|||||+..|+...   +.......|+-.-......+++-.+.++|.||+........-..+    .+.+
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~---SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGR----Qvia  135 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTH---SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGR----QVIA  135 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcch---hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCc----eEEE
Confidence            799999999999999999998643   222222333332233344589999999999999765432222111    2223


Q ss_pred             cCCCccEEEEEEeCC
Q 023779          100 AKDGIHAFLVVFSVT  114 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~  114 (277)
                      ..+.+|++|.|+|++
T Consensus       136 vArtaDlilMvLDat  150 (364)
T KOG1486|consen  136 VARTADLILMVLDAT  150 (364)
T ss_pred             EeecccEEEEEecCC
Confidence            346679999999997

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.90  E-value=9.2e-09  Score=86.29  Aligned_cols=66  Identities=27%  Similarity=0.358  Sum_probs=46.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (277)
                      ...+|+++|.+|+|||||+|+|++......+. ..+.|......    .-+..+.++||||+..+...+.+
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~----~~~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWI----KLGKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEE----EeCCcEEEEECCCcCCCCCCcHH
Confidence            45799999999999999999999987644432 22344443322    22456889999999876544433

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3.2e-09  Score=76.64  Aligned_cols=163  Identities=16%  Similarity=0.115  Sum_probs=101.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      +...+|.++|--|+||||.+-.+--.++.     ...+|....+..+ .+.+-.+.+||.-|-.           .+.-.
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevv-----ttkPtigfnve~v-~yKNLk~~vwdLggqt-----------SirPy   78 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVV-----TTKPTIGFNVETV-PYKNLKFQVWDLGGQT-----------SIRPY   78 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccc-----ccCCCCCcCcccc-ccccccceeeEccCcc-----------cccHH
Confidence            35689999999999999988665422211     1122222333322 3577789999988844           35566


Q ss_pred             HhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...+|.+.|+++||+|.+  .+++.....+..++++---...  .++|+.||.|....  ....+.+..   ..++++  
T Consensus        79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a--~llv~anKqD~~~~--~t~~E~~~~---L~l~~L--  149 (182)
T KOG0072|consen   79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA--KLLVFANKQDYSGA--LTRSEVLKM---LGLQKL--  149 (182)
T ss_pred             HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc--eEEEEeccccchhh--hhHHHHHHH---hChHHH--
Confidence            666788899999999998  3455444555555554322222  57788999998766  344443332   002222  


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                        .+|...+   ...||-.+.+++..++++.+-+..
T Consensus       150 --k~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  150 --KDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             --hhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence              2333221   234777789999999999887754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2.4e-08  Score=77.26  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ..|+++|++++|||+|+-.|.-......-   .+.......+   .+....+.+||.||...       +...+...+..
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~---r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATY---RLGSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeE---eecCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            67999999999999999877633221110   1111111111   13444589999999552       33444444332


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHH----HHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVH----RLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      . ..+-+++||+|.. -+...-+..-+    .+....+..-..|++|+-||.|....
T Consensus       106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            2 3678999999987 44333333333    33333111122389999999998755

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.88  E-value=1.3e-09  Score=97.81  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEE
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM   60 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~   60 (277)
                      ..+-+|+|||++|+|||||++.|+|...+..|........+..+
T Consensus        27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~   70 (530)
T COG0488          27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGY   70 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEE
Confidence            35589999999999999999999999877776433333333333

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.87  E-value=4.7e-08  Score=71.43  Aligned_cols=119  Identities=21%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh-CCCCccccCCCCCcceee-EEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~-~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      +..+|+++|--++|||+++..|+ |...+  +. ...+|... -...+.+..+  ..+.|.||.|+.+..       .++
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~--~~-e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~-------~eL   77 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP--GT-ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ-------QEL   77 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCC--CC-ccccchhhheeEeeecCCChhheEEEeecccccCch-------hhh
Confidence            34789999999999999998776 43332  21 22333332 2223332222  458999999988631       122


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcCccCcEEEEEeCCCCCCc
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~---~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      -+.   ++.-+|+|++|++..+   .+....++.+++-   +......|++|+.|+.|..+.
T Consensus        78 prh---y~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   78 PRH---YFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             hHh---HhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence            222   3455699999999762   2333333433332   233334599999999998655

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.87  E-value=9.8e-09  Score=80.98  Aligned_cols=73  Identities=25%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.||||||...   .+.....++...+...  .++-+++|++++..  ..+...+....+.++     +-=+++||.
T Consensus        83 ~~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl  150 (196)
T PF00448_consen   83 GYDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL  150 (196)
T ss_dssp             TSSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred             CCCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence            35689999999875   2344455666655544  56889999998722  233333333434333     345779999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       151 Det~~  155 (196)
T PF00448_consen  151 DETAR  155 (196)
T ss_dssp             TSSST
T ss_pred             cCCCC
Confidence            97755

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01856 YlqF YlqF

Probab=98.86  E-value=8.3e-09  Score=79.93  Aligned_cols=59  Identities=27%  Similarity=0.381  Sum_probs=40.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      +...+++++|.+|+|||||+|.|++......+. ..+.|.......   .. ..+.++||||++
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~T~~~~~~~---~~-~~~~~iDtpG~~  171 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGN-KPGVTKGIQWIK---IS-PGIYLLDTPGIL  171 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCEEeeeEEEE---ec-CCEEEEECCCCC
Confidence            345789999999999999999999876532221 223333333222   22 568899999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.85  E-value=9.9e-09  Score=87.84  Aligned_cols=62  Identities=24%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce-eeEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~   85 (277)
                      ..++|+|.+|||||||||+|++.....++..+.     ..|+ ....+..  ..+  ..|+||||+-.....
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~--~~liDTPGir~~~l~  273 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHG--GDLIDSPGVREFGLW  273 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCC--CEEEECCCCCcccCC
Confidence            458999999999999999999887655443221     2333 3333332  122  359999999876543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.84  E-value=1.9e-08  Score=83.89  Aligned_cols=62  Identities=26%  Similarity=0.326  Sum_probs=43.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ...+++++|.+|+|||||+|+|++......+.. .+.|.......   . +..+.++||||+.....
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~---~-~~~~~l~DtPG~~~~~~  178 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIK---L-SDGLELLDTPGILWPKF  178 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEE---e-CCCEEEEECCCcccCCC
Confidence            457899999999999999999998775444332 23343333221   2 34688999999976543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=83.34  Aligned_cols=63  Identities=32%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCccee-eEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .+...+++|++|||||||+|+|.+......+..     ....|++ ...++.   . ....|+|||||.....
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l---~-~gG~iiDTPGf~~~~l  231 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL---P-GGGWIIDTPGFRSLGL  231 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc---C-CCCEEEeCCCCCccCc
Confidence            346899999999999999999997554333311     2223333 333332   1 2345999999986543

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=1.5e-08  Score=79.23  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=77.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..++|+++|.+|+||||+=..+.... -.......+.|.+..-.+.....+..+.+||+-|-.      ..+...+...-
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~   75 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQE   75 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcc
Confidence            34899999999999999877765222 112233456666666555554455678899999822      12222222122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ...+..++++++|+|++.+--..|    ...++.+.+.. +.  ..++++++|+|....
T Consensus        76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~--AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PE--AKIFCLLHKMDLVQE  131 (295)
T ss_pred             hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-Cc--ceEEEEEeechhccc
Confidence            345678899999999983322222    23344444432 22  278899999998865

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.1e-08  Score=87.54  Aligned_cols=117  Identities=22%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------CCcceeeEEEEEe--eeC--CceEEEEeCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------SGVTKTCEMKTTV--LKD--GQVVNVIDTPG   78 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---------------~~~t~~~~~~~~~--~~~--~~~~~liDtpG   78 (277)
                      ..++|+++|+-++|||+|+..|.+...+......               .+.+....-....  ...  .+-++++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            4589999999999999999999876653321000               0122211111111  112  23488999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ..++.       .+....+.    -+|++++++|+..+......+.++...+.   .  .|+++|+||+|.+
T Consensus       207 HVnF~-------DE~ta~l~----~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~--~~i~vviNKiDRL  262 (971)
T KOG0468|consen  207 HVNFS-------DETTASLR----LSDGVVLVVDVAEGVMLNTERIIKHAIQN---R--LPIVVVINKVDRL  262 (971)
T ss_pred             cccch-------HHHHHHhh----hcceEEEEEEcccCceeeHHHHHHHHHhc---c--CcEEEEEehhHHH
Confidence            88742       35555554    44999999999977777666665544433   2  2899999999966

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.81  E-value=1.1e-08  Score=83.81  Aligned_cols=60  Identities=25%  Similarity=0.253  Sum_probs=40.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ..++++|++|||||||+|+|++......+...     .. +|+.......   .  ...|+||||+.....
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l  186 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL  186 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence            68999999999999999999987654443211     12 3333333332   2  237999999987654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.81  E-value=9.6e-09  Score=87.95  Aligned_cols=60  Identities=25%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce-eeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (277)
                      ..++|+|++|||||||||+|++......+..+.     ..|+ .......  ..+  ..|+||||+....
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~~  238 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQPD  238 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCccccc
Confidence            468999999999999999999876544432211     1233 3332222  123  3799999987644

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=4.4e-08  Score=88.27  Aligned_cols=174  Identities=17%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-----------------eeCCceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----------------LKDGQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~~~~liDtpG~~   80 (277)
                      .++.+.|+|+..+|||-|+..|-+.++.....  .+.|..++...+.                 .+.-..+.+|||||..
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea--ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA--GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccc--cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            45789999999999999999999877643332  2333333222110                 0111237899999965


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc----cccc
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----HEKT  156 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~----~~~~  156 (277)
                      +           |...-.......|..|+|+|+.+++.+.....+++|+..   ..  |+||.+||+|.+-.    +...
T Consensus       552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~  615 (1064)
T KOG1144|consen  552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAP  615 (1064)
T ss_pred             h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCch
Confidence            4           222222223344999999999989988888888888764   22  89999999998732    2233


Q ss_pred             HHHHhcccCC-------chHHHHHhhc---C-CeEEEEe--------CCCcccccChhHHHHHHHHHHHHHh
Q 023779          157 LEDFLGHECP-------KPLKEILQLC---D-NRCVLFD--------NKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       157 l~~~l~~~~~-------~~~~~~~~~~---~-~~~~~~~--------~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +.+.+.....       ..+..++..+   | +-.+.|.        ...++||..+.|+.+|+.+|..+-+
T Consensus       616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            3333222100       1123332221   1 1111122        2246688889999999998877644

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.79  E-value=2.4e-07  Score=76.69  Aligned_cols=91  Identities=19%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-------------C---CceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------------D---GQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~---~~~~~liDtpG~~~   81 (277)
                      +.++|+|||-+++|||||+|+|+.....+..  .+-+|.......+...             .   .-.+.+.|..|+-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~N--fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAAN--FPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccC--CCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            5689999999999999999999976653221  1222322222111101             1   12488999999987


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ......-++..+...+.    .+|+++-|+++.
T Consensus        97 GAs~G~GLGN~FLs~iR----~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIR----HVDAIFHVVRAF  125 (391)
T ss_pred             CcccCcCchHHHHHhhh----hccceeEEEEec
Confidence            77666667777776654    458888888875

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=9.1e-08  Score=70.98  Aligned_cols=116  Identities=11%  Similarity=0.036  Sum_probs=72.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +.-+++++|--|+|||||++.|-..... ...+...+|+..     -...+..++.+|.-|.           .+-.+..
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~-----l~Ig~m~ftt~DLGGH-----------~qArr~w   81 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE-----LSIGGMTFTTFDLGGH-----------LQARRVW   81 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHH-----heecCceEEEEccccH-----------HHHHHHH
Confidence            3468999999999999999999754431 112122222211     1256778999998882           2334444


Q ss_pred             hhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+++.+|++++++|+.  .++... +..++.+... ..-.+.|++++.||+|....
T Consensus        82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence            56678889999999998  233222 2222222221 10123499999999997655

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.76  E-value=3.8e-08  Score=84.02  Aligned_cols=123  Identities=18%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEEEE----------------------------EeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKT----------------------------TVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~----------------------------~~~~~~   68 (277)
                      +++.|+||||+||||||++-.|........+.... -.|++.....                            ......
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            47999999999999999998887544311221111 1222221111                            111234


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      +.+.||||.|...   .+.....++..++..+  ...-+.+|++++.. ...-+.++..    |+.-  ..--+++||+|
T Consensus       282 ~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~----f~~~--~i~~~I~TKlD  349 (407)
T COG1419         282 CDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQ----FSLF--PIDGLIFTKLD  349 (407)
T ss_pred             CCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHH----hccC--CcceeEEEccc
Confidence            6799999999775   3444555666666544  33445566666511 1111333333    3321  13557899999


Q ss_pred             CCCc
Q 023779          149 DLED  152 (277)
Q Consensus       149 ~~~~  152 (277)
                      ....
T Consensus       350 ET~s  353 (407)
T COG1419         350 ETTS  353 (407)
T ss_pred             ccCc
Confidence            7644

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.75  E-value=1.8e-07  Score=68.62  Aligned_cols=180  Identities=17%  Similarity=0.144  Sum_probs=102.5

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779            5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .+.++.-+.....-.++|+++|++-.|||||+-...+...-.......+.........+. .....+.+||.-|      
T Consensus         6 tv~~~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG------   78 (205)
T KOG1673|consen    6 TVANNSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGG------   78 (205)
T ss_pred             ccccCCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCC------
Confidence            344444444455566899999999999999998877655421111111111111111111 1233578999988      


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                           .+++...+..+..++-++|+++|++.+.+...  +.+|.++..|-....--|+|+||-|..-.-...+...+.. 
T Consensus        79 -----~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~-  150 (205)
T KOG1673|consen   79 -----QREFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR-  150 (205)
T ss_pred             -----cHhhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-
Confidence                 34677777777788899999999995544333  4456666555443223567899999663311223222221 


Q ss_pred             CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                         ..+..........++      +|+-..-++..++..+..-+
T Consensus       151 ---qar~YAk~mnAsL~F------~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  151 ---QARKYAKVMNASLFF------CSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             ---HHHHHHHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence               133344444444443      23344567888887665443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.75  E-value=1.5e-08  Score=82.30  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=32.2

Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH---HHHhCcCccCcEEEEEeC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL---PNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ivv~nk  146 (277)
                      .+.++||||....... ......+.+.+..  ...-++++++|.. .++......-..+   .-++.-+  .|.+.|+||
T Consensus        92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK  165 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK  165 (238)
T ss_dssp             SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred             cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence            6899999994321100 0111222222221  3456889999987 4443222211111   1111112  299999999


Q ss_pred             CCCCCc
Q 023779          147 GDDLED  152 (277)
Q Consensus       147 ~D~~~~  152 (277)
                      +|....
T Consensus       166 ~Dl~~~  171 (238)
T PF03029_consen  166 IDLLSK  171 (238)
T ss_dssp             GGGS-H
T ss_pred             cCcccc
Confidence            998873

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.74  E-value=4.4e-08  Score=82.56  Aligned_cols=60  Identities=30%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cccee-eEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      ...++++|++|+|||||+|+|+|......+....     ..|++ .....   .. ....++||||+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~---~~-~~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD---LP-GGGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE---cC-CCcEEEECCCcCcc
Confidence            4689999999999999999999877655442221     12332 22222   12 22479999998853

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.74  E-value=3.2e-08  Score=85.53  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCCCCc-ceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~---~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...++++|.+|||||||+|+|++.....   ...+..+. |......  .  -+..+.++||||+.........+..+..
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l  229 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--P--LDDGHSLYDTPGIINSHQMAHYLDKKDL  229 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--E--eCCCCEEEECCCCCChhHhhhhcCHHHH
Confidence            3689999999999999999999754211   11222333 3332222  1  1334679999999864211111111111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+. .........++++..+.+..+....+.++..   ..  ..+.+.+++.+....
T Consensus       230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~h~  281 (360)
T TIGR03597       230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNIHR  281 (360)
T ss_pred             hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCceeEe
Confidence            1211 1245677788877765444444333333332   11  145556666655543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.74  E-value=1.3e-07  Score=87.75  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccC-CCCCcceeeEE------------------EE----------EeeeCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEM------------------KT----------TVLKDGQ   69 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~------------------~~----------~~~~~~~   69 (277)
                      +..|+|||++|+||||++..|++......|. ...-.+.+...                  ..          .....+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            4789999999999999999998654221110 00000000000                  00          0112245


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      .++||||||....   +..+.+++.....  ...++-.++|+|++.  ...+ ..++..+....+.+   +.=+|+||.|
T Consensus       265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~---i~glIlTKLD  334 (767)
T PRK14723        265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGED---VDGCIITKLD  334 (767)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence            6899999997652   2334444443322  235677889998872  1222 12333333321112   4568899999


Q ss_pred             CCCc
Q 023779          149 DLED  152 (277)
Q Consensus       149 ~~~~  152 (277)
                      ....
T Consensus       335 Et~~  338 (767)
T PRK14723        335 EATH  338 (767)
T ss_pred             CCCC
Confidence            7755

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.74  E-value=5.4e-08  Score=81.61  Aligned_cols=59  Identities=31%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      ..++++|++|+|||||+|+|+|...+..+...     .. +|+......   .. ....++||||+.+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~---~~-~~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP---LP-GGGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE---cC-CCCEEEECCCCCcc
Confidence            78999999999999999999998765555221     11 222222222   11 12479999999653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.73  E-value=6e-08  Score=83.03  Aligned_cols=123  Identities=19%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--------ccccCCCCC---------cceeeEEEEE-------------eeeC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--------FKASAGSSG---------VTKTCEMKTT-------------VLKD   67 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--------~~~~~~~~~---------~t~~~~~~~~-------------~~~~   67 (277)
                      +..+|+|+|++|+||||++..|.+.-.        ...+....+         ....+.+...             ....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            347899999999999999999863211        000000000         0000000000             0001


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.||||||-..   .+.....++...+...  .++.+++|++++ .-...-...++.+..      ...-=+|+||+
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~------~~idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD------IHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC------CCCCEEEEEcc
Confidence            34789999999764   2334444555555433  457788888875 111111333333332      12466899999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       388 DET~k  392 (436)
T PRK11889        388 DETAS  392 (436)
T ss_pred             cCCCC
Confidence            97754

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.71  E-value=6.4e-08  Score=84.41  Aligned_cols=124  Identities=15%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----Ccceee---------------EEEE----------EeeeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTKTC---------------EMKT----------TVLKD   67 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~~t~~~---------------~~~~----------~~~~~   67 (277)
                      ..+.+|+|+|++|+||||++..|.+......+....    ..+.+.               ....          .....
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~  268 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR  268 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence            456899999999999999999887642111110000    000000               0000          01122


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.+|||+|....   +.....++... .. ...++-.++|++++..  ..+  ..+.+.. |..  ...-=+|+||+
T Consensus       269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~--~~~~~~~-f~~--~~~~~~I~TKl  336 (420)
T PRK14721        269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT--LDEVISA-YQG--HGIHGCIITKV  336 (420)
T ss_pred             CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH--HHHHHHH-hcC--CCCCEEEEEee
Confidence            456889999997752   23333444332 21 2335667788888721  222  2122222 322  12566899999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       337 DEt~~  341 (420)
T PRK14721        337 DEAAS  341 (420)
T ss_pred             eCCCC
Confidence            97755

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.70  E-value=5.1e-08  Score=82.85  Aligned_cols=62  Identities=29%  Similarity=0.355  Sum_probs=43.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ...+++++|-+||||||+||+|+|......+.. ++.|.......    -...+.++||||+.-...
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~  192 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCCCcCCCCc
Confidence            347899999999999999999999887433322 24443333332    234488999999986543

>TIGR00092 GTP-binding protein YchF

Probab=98.69  E-value=1.1e-07  Score=81.23  Aligned_cols=90  Identities=14%  Similarity=0.072  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS   83 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~   83 (277)
                      .+++|+|.+++|||||+|+|++......... ..+|...........+                ...+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6899999999999999999998765122221 1122222221111112                1357899999998654


Q ss_pred             CCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .....+...+...+..    .|++++|++..
T Consensus        82 s~g~Glgn~fL~~ir~----~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIRE----VDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHh----CCEEEEEEeCC
Confidence            3334455566666554    49999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=1.2e-07  Score=81.51  Aligned_cols=129  Identities=19%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccceee------------------EEEE----------EeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTC------------------EMKT----------TVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~------------------~~~~----------~~~~~~   68 (277)
                      .+..++|+|++|+||||++..|.+......|.... -.+.+.                  ....          ...+.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            45789999999999999999987542111110000 000000                  0000          011235


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCc---cCcEEEEEe
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT  145 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ivv~n  145 (277)
                      ..+.||||||....   +..+.+++.. +.. ...+.-.++|+++..+....+ ..+..+....+.+.   ....=+|+|
T Consensus       216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~T  289 (374)
T PRK14722        216 KHMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILT  289 (374)
T ss_pred             CCEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEe
Confidence            67899999997752   2223333332 222 233455678888873322222 23344444322110   013458899


Q ss_pred             CCCCCCc
Q 023779          146 GGDDLED  152 (277)
Q Consensus       146 k~D~~~~  152 (277)
                      |.|....
T Consensus       290 KlDEt~~  296 (374)
T PRK14722        290 KLDEASN  296 (374)
T ss_pred             ccccCCC
Confidence            9997755

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.69  E-value=1.3e-07  Score=93.32  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC----chHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFVG   90 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~   90 (277)
                      -.+|||++|+||||+|+.- |..++-...      ...+.|..|     ..|-....++|||+|.+-...+    +...-
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-----~wwf~~~avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-----DWWFTDEAVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-----ceEecCCEEEEcCCCccccCCCcccccHHHH
Confidence            3899999999999999875 555432211      111223322     3344566779999997644322    22234


Q ss_pred             HHHHHHHhhc--CCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           91 KEIVKCLGMA--KDGIHAFLVVFSVTNRFS--QE--------EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        91 ~~~~~~~~~~--~~~~~~~l~v~d~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+...+...  .+.++++|+++++..-+.  ..        -+..+..+...+|...  ||.||+||+|.+..
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC
Confidence            4455555544  356899999999982222  22        1344556666677766  99999999998843

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=5e-08  Score=88.16  Aligned_cols=118  Identities=21%  Similarity=0.383  Sum_probs=82.5

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--------------cccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAF--------------KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      .++.+.++|.++.+...|||||+.+|+..+..              .......+.|......... ..++.+++||+||.
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspgh   82 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCCc
Confidence            45567789999999999999999998754320              0111223555555444322 46788999999999


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHhCcCccCcEEEEEeCCCCC
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH--RLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      .|+.       .++..+...+    |.+++++|+-.++...+...++  |+...       ..++|+||+|.+
T Consensus        83 vdf~-------sevssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~~~~-------~~~lvinkidrl  137 (887)
T KOG0467|consen   83 VDFS-------SEVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWIEGL-------KPILVINKIDRL  137 (887)
T ss_pred             cchh-------hhhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHHccC-------ceEEEEehhhhH
Confidence            8853       3555555444    9999999998788877776666  44432       688999999944

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.69  E-value=1e-06  Score=74.69  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc--------CCCC---------CcceeeEEEEEe---------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------AGSS---------GVTKTCEMKTTV---------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------~~~~---------~~t~~~~~~~~~---------------   64 (277)
                      .++..|+++|++|+||||++..|.+......+        ....         .......+....               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999999988653211100        0000         000001111100               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (277)
Q Consensus        65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (277)
                       ...+..+.||||||....   +.....++.......    ...++..++|++++.+  .........+.+.+     .+
T Consensus       192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence             013456899999997653   233333444443221    2357888999999832  22222122222222     25


Q ss_pred             EEEEEeCCCCCCc
Q 023779          140 MIVVFTGGDDLED  152 (277)
Q Consensus       140 ~ivv~nk~D~~~~  152 (277)
                      .-+|+||+|....
T Consensus       262 ~giIlTKlD~t~~  274 (318)
T PRK10416        262 TGIILTKLDGTAK  274 (318)
T ss_pred             CEEEEECCCCCCC
Confidence            7799999996644

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=9.5e-08  Score=72.45  Aligned_cols=157  Identities=17%  Similarity=0.080  Sum_probs=93.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--eeCC-ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ..+++++|..|.||||++++.+-..+-....    .|+.....+..  ...+ ..+.+|||.|..-           ...
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~----at~Gv~~~pl~f~tn~g~irf~~wdtagqEk-----------~gg   74 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP----ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK-----------KGG   74 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceeccc----CcceeEEeeeeeecccCcEEEEeeeccccee-----------ecc
Confidence            5899999999999999999887555422222    22222222222  1223 5688999999442           122


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      .-..++-...+.++++|+..+++-.. .++.+-+...++.   .|++++.||.|....  .     ....    --.+..
T Consensus        75 lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r--~-----~k~k----~v~~~r  140 (216)
T KOG0096|consen   75 LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR--K-----VKAK----PVSFHR  140 (216)
T ss_pred             cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc--c-----cccc----cceeee
Confidence            22234556688999999997777666 3555556666654   399999999996544  1     1100    001111


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .-...|+      ..|++.+.++..-+-++.+.+..
T Consensus       141 kknl~y~------~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  141 KKNLQYY------EISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             cccceeE------EeecccccccccchHHHhhhhcC
Confidence            1122222      23566677788877777776643

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.64  E-value=7e-08  Score=86.79  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .++-+|+|+|++|+|||||++.|+|...+.+|....+.+....++...... ...-+++|.-.-...    ......+..
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~~e~~~r~  421 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVRA  421 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc----cccHHHHHH
Confidence            466799999999999999999999888777776666777777777543211 011122221000000    000234444


Q ss_pred             HHhhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE---EeCCCCCCcccccHHHHhcc
Q 023779           96 CLGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        96 ~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv---~nk~D~~~~~~~~l~~~l~~  163 (277)
                      ++... +++.++.-   .+. .++++++..+.+.+-+..++   +++|+   +||.|...-  ..+++.+..
T Consensus       422 ~L~~f~F~~~~~~~---~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~  484 (530)
T COG0488         422 YLGRFGFTGEDQEK---PVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLD  484 (530)
T ss_pred             HHHHcCCChHHHhC---chh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHh
Confidence            54433 23333322   222 67789988888877766653   67776   799997655  556666554

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.64  E-value=5.6e-07  Score=80.03  Aligned_cols=25  Identities=28%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+..|+|+|++|+||||++..|..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999988864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.63  E-value=1.2e-06  Score=72.71  Aligned_cols=76  Identities=21%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEE
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (277)
                      .+..+.||||||....   +.....++.......    ...+|..++|+++..  ..........+.+.++     ..-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence            3467899999998752   334444444443322    234789999999972  2333332233333222     5678


Q ss_pred             EEeCCCCCCc
Q 023779          143 VFTGGDDLED  152 (277)
Q Consensus       143 v~nk~D~~~~  152 (277)
                      |+||+|....
T Consensus       223 IlTKlDe~~~  232 (272)
T TIGR00064       223 ILTKLDGTAK  232 (272)
T ss_pred             EEEccCCCCC
Confidence            9999997655

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.63  E-value=2.2e-07  Score=79.39  Aligned_cols=124  Identities=19%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC------C--ccccCCCCCc---------ceeeEEEEEee-------------e
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK------A--FKASAGSSGV---------TKTCEMKTTVL-------------K   66 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~------~--~~~~~~~~~~---------t~~~~~~~~~~-------------~   66 (277)
                      .+...|+++|++|+||||++..|....      +  ........+.         ...........             .
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~  283 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV  283 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence            356889999999999999999886321      1  0000100000         00000100000             0


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .+..+.||||||...   .+.....++.......  .+|.+++|++++  ....+  ....+.. |..  ...--+|+||
T Consensus       284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TK  351 (407)
T PRK12726        284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITK  351 (407)
T ss_pred             CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEc
Confidence            245789999999865   2334444454444322  457777777664  22223  3333333 322  1256788999


Q ss_pred             CCCCCc
Q 023779          147 GDDLED  152 (277)
Q Consensus       147 ~D~~~~  152 (277)
                      .|....
T Consensus       352 LDET~~  357 (407)
T PRK12726        352 MDETTR  357 (407)
T ss_pred             ccCCCC
Confidence            997654

>PRK14974 cell division protein FtsY; Provisional

Probab=98.62  E-value=4.9e-07  Score=76.90  Aligned_cols=73  Identities=18%  Similarity=0.142  Sum_probs=43.4

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.||||+|....   +..+..++......  -.+|..++|+++..+  .........+....+     .--+|+||+
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence            456899999997752   33444455444332  256888999998622  222222233322222     467899999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       290 D~~~~  294 (336)
T PRK14974        290 DADAK  294 (336)
T ss_pred             cCCCC
Confidence            97654

>cd01859 MJ1464 MJ1464

Probab=98.62  E-value=1.4e-07  Score=71.84  Aligned_cols=57  Identities=32%  Similarity=0.427  Sum_probs=38.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ...+++++|.+|+||||++|.+.+......+.. .+.|......    ..+..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV----KITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE----EcCCCEEEEECcCC
Confidence            347899999999999999999997654333221 2223222211    12346889999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.62  E-value=3.2e-07  Score=73.93  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      +..+.||.|.|.+.         .++. ..    .-+|.+++|+...  ..+...-.-    +.++       .=++|+|
T Consensus       121 G~D~IiiETVGvGQ---------sE~~-I~----~~aD~~v~v~~Pg~GD~iQ~~KaG----imEi-------aDi~vVN  175 (266)
T PF03308_consen  121 GFDVIIIETVGVGQ---------SEVD-IA----DMADTVVLVLVPGLGDEIQAIKAG----IMEI-------ADIFVVN  175 (266)
T ss_dssp             T-SEEEEEEESSST---------HHHH-HH----TTSSEEEEEEESSTCCCCCTB-TT----HHHH--------SEEEEE
T ss_pred             CCCEEEEeCCCCCc---------cHHH-HH----HhcCeEEEEecCCCccHHHHHhhh----hhhh-------ccEEEEe
Confidence            56789999999885         1222 22    2348888887765  222211111    2222       3578999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      |.|....     +.....     ++..+.....   .+.+  +...+++..+.++++|++.|.+....
T Consensus       176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~p--pV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRP--PVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB----EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCChHHH-----HHHHHH-----HHHHHhhccccccCCCC--CEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9994322     233332     4444433221   1110  11245667789999999999887643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.7e-06  Score=71.80  Aligned_cols=173  Identities=17%  Similarity=0.217  Sum_probs=104.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC------Cccc--------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      ..+..+|+-||+...|||||-.+|+..-      .+..        ..-..+.|....-.... -..+++-=+|+||..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence            3456899999999999999999986311      1100        01112444332222222 2456788899999654


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                                .+.+.+. .....|+.++|+.+.++.-+..++.+-+.++. |-+   +++|.+||.|...+  +..-+.+
T Consensus       130 ----------YIKNMIt-GaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~d--~e~leLV  192 (449)
T KOG0460|consen  130 ----------YIKNMIT-GAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVDD--PEMLELV  192 (449)
T ss_pred             ----------HHHHhhc-CccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccCC--HHHHHHH
Confidence                      2333332 33466999999999866666677766666664 543   79999999999966  5555555


Q ss_pred             cccCCchHHHHHhhcC---CeEEEEeCCCcc------cccChhHHHHHHHHHHHHHhh
Q 023779          162 GHECPKPLKEILQLCD---NRCVLFDNKTKD------EAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +-    ..++++..+|   +..-++...+-+      +......+.+|++.++..++.
T Consensus       193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~  246 (449)
T KOG0460|consen  193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT  246 (449)
T ss_pred             HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence            43    2677777765   222222221111      111224577888888887654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.54  E-value=6.2e-06  Score=72.71  Aligned_cols=72  Identities=22%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.||||||....   +..+.+++......  ..+|.+++|+|++.+  .   ..++.+.. |.... ...-+|+||+|
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence            46899999997652   34444455544332  256889999998732  1   23334443 33211 13568899999


Q ss_pred             CCCc
Q 023779          149 DLED  152 (277)
Q Consensus       149 ~~~~  152 (277)
                      ....
T Consensus       244 ~~a~  247 (437)
T PRK00771        244 GTAK  247 (437)
T ss_pred             CCCc
Confidence            7654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.53  E-value=3.9e-07  Score=78.99  Aligned_cols=124  Identities=17%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcccc---------CCCCC---------cceeeEEEEE---------eeeCCceE
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS---------AGSSG---------VTKTCEMKTT---------VLKDGQVV   71 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~---------~~~~~---------~t~~~~~~~~---------~~~~~~~~   71 (277)
                      ...|+++|++||||||++..|........|         ....+         ..........         ....+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            467999999999999999888642211111         00000         0000000000         00135578


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      .||||||+...   +.....++...+.... ..++-.++|++++..  ..+  ....+. .|..  ..+-=+|+||+|..
T Consensus       303 VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~--~~~~~~-~f~~--~~~~glIlTKLDEt  372 (432)
T PRK12724        303 ILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH--TLTVLK-AYES--LNYRRILLTKLDEA  372 (432)
T ss_pred             EEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH--HHHHHH-HhcC--CCCCEEEEEcccCC
Confidence            99999998742   2233344544444322 234567888888722  212  212222 2321  12566899999976


Q ss_pred             Cc
Q 023779          151 ED  152 (277)
Q Consensus       151 ~~  152 (277)
                      ..
T Consensus       373 ~~  374 (432)
T PRK12724        373 DF  374 (432)
T ss_pred             CC
Confidence            54

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.53  E-value=1.4e-07  Score=82.00  Aligned_cols=60  Identities=35%  Similarity=0.353  Sum_probs=44.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ..+|++||-+||||||+||+|.|...  .+++ .++.|...+..    .-...+.|.|+||+.-++-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TPGkTKHFQTi----~ls~~v~LCDCPGLVfPSf  374 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTPGKTKHFQTI----FLSPSVCLCDCPGLVFPSF  374 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCce--eeeecCCCCcceeEEE----EcCCCceecCCCCccccCC
Confidence            48999999999999999999999886  3333 34445444433    2345678999999976543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.53  E-value=3e-06  Score=69.43  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=57.4

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhCcCccCcEEEEEeC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ivv~nk  146 (277)
                      |+.+.||.|.|.+....       ++.       .-+|.+++|.-..  . +.+.+.++ =+.++       -=++|+||
T Consensus       143 G~DvIIVETVGvGQsev-------~I~-------~~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK  198 (323)
T COG1703         143 GYDVIIVETVGVGQSEV-------DIA-------NMADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK  198 (323)
T ss_pred             CCCEEEEEecCCCcchh-------HHh-------hhcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence            46788999999876321       222       2238888776544  2 12222222 12222       34789999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .|.-..  .   .....     +...+....  .+.... .....+++..+.++++|++.|......
T Consensus       199 aD~~~A--~---~a~r~-----l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         199 ADRKGA--E---KAARE-----LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             cChhhH--H---HHHHH-----HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            994332  1   11111     222222211  111111 122356777889999999999988764

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.52  E-value=1.3e-06  Score=77.53  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .+..|+|+|++||||||++..|++..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHH
Confidence            34789999999999999999998643

>PRK13796 GTPase YqeH; Provisional

Probab=98.49  E-value=2.6e-07  Score=80.03  Aligned_cols=59  Identities=25%  Similarity=0.210  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCCCC-cceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~---~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      ...+.++|.+|||||||||+|++.....   ...+..+ +|.......   .+ ....++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~---l~-~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP---LD-DGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE---cC-CCcEEEECCCccc
Confidence            4689999999999999999998643111   1122233 333332222   12 2247999999964

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.49  E-value=7.6e-07  Score=77.20  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-------c-----cCCCC-------------CcceeeEEEE------Eeee
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK-------A-----SAGSS-------------GVTKTCEMKT------TVLK   66 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-------~-----~~~~~-------------~~t~~~~~~~------~~~~   66 (277)
                      .+..|+++|++|+||||++..|.......       .     .....             +.........      ....
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            45789999999999999998886321100       0     00000             0000000000      0112


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .+..+.||||||....   +.....++...+.... ..+-.++|++++..  ..+  ..+.+... ..  ..+-=+|+||
T Consensus       253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence            3567999999998752   2222345555554332 23357888888733  222  22333433 11  1156789999


Q ss_pred             CCCCCc
Q 023779          147 GDDLED  152 (277)
Q Consensus       147 ~D~~~~  152 (277)
                      .|....
T Consensus       322 lDet~~  327 (388)
T PRK12723        322 LDETTC  327 (388)
T ss_pred             ccCCCc
Confidence            997654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.48  E-value=4.4e-07  Score=79.97  Aligned_cols=122  Identities=20%  Similarity=0.193  Sum_probs=62.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceee------------------EEEE----------EeeeCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTC------------------EMKT----------TVLKDGQ   69 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~------------------~~~~----------~~~~~~~   69 (277)
                      ...|+|+|++|+||||++..|..... ...+....-.+.+.                  ....          .....+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            46899999999999999988754321 01110000000000                  0000          0011245


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      .+.||||||....   +.....++..++... ....-.++|++++.  ...+ ...+..    |..-  .+--+|+||+|
T Consensus       301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~--~~~~l~~~~~~----f~~~--~~~~vI~TKlD  368 (424)
T PRK05703        301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATT--KYEDLKDIYKH----FSRL--PLDGLIFTKLD  368 (424)
T ss_pred             CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCC--CHHHHHHHHHH----hCCC--CCCEEEEeccc
Confidence            7899999998652   233334455554422 23356677777752  2222 222232    3221  13468999999


Q ss_pred             CCCc
Q 023779          149 DLED  152 (277)
Q Consensus       149 ~~~~  152 (277)
                      ....
T Consensus       369 et~~  372 (424)
T PRK05703        369 ETSS  372 (424)
T ss_pred             cccc
Confidence            7544

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.46  E-value=1.8e-06  Score=65.82  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .++++|..|+|||||++.+++.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4789999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.44  E-value=1.5e-06  Score=70.74  Aligned_cols=41  Identities=24%  Similarity=0.279  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779            6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +-.+..+.-+  ++..++|+||+|||||||+++|+|.-.+..|
T Consensus        17 il~~ls~~i~--~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G   57 (258)
T COG1120          17 ILDDLSFSIP--KGEITGILGPNGSGKSTLLKCLAGLLKPKSG   57 (258)
T ss_pred             EEecceEEec--CCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            3344444443  4588999999999999999999986665554

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.43  E-value=9e-07  Score=70.74  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..+.|+|+|+.|+|||||++.++..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4588999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.43  E-value=7.3e-06  Score=63.87  Aligned_cols=31  Identities=32%  Similarity=0.427  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998665444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.42  E-value=9e-06  Score=63.09  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++|+|++|+|||||++.|+|...+..|
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence            45679999999999999999999998765554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.39  E-value=1.1e-05  Score=66.58  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~   47 (277)
                      ..+++..|+++|.+|+||||||..|-|.+.+..
T Consensus        48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~~Kk   80 (473)
T KOG3905|consen   48 KLPSGKNVLVLGDNGSGKTSLISKLQGSETVKK   80 (473)
T ss_pred             cCCCCCeEEEEccCCCchhHHHHHhhcccccCC
Confidence            345678999999999999999999998765333

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.37  E-value=1.6e-06  Score=71.56  Aligned_cols=123  Identities=19%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC---cccc-CCCC-------------CcceeeEEEEEe-------------eeC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA---FKAS-AGSS-------------GVTKTCEMKTTV-------------LKD   67 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~---~~~~-~~~~-------------~~t~~~~~~~~~-------------~~~   67 (277)
                      +..+|+++|++|+||||++..|++...   ...+ ....             ............             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            447999999999999999998865321   0011 0000             000000001000             012


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.||||||-...   +.....++...+...  .++..++|++++..  ..+  ..+.+.. |..  ..+-=+|+||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~--~~d--~~~~~~~-f~~--~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK--SKD--MIEIITN-FKD--IHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC--HHH--HHHHHHH-hCC--CCCCEEEEEee
Confidence            457899999997642   234444555554433  45678999998611  222  2233333 222  12566899999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       222 Det~~  226 (270)
T PRK06731        222 DETAS  226 (270)
T ss_pred             cCCCC
Confidence            97755

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.37  E-value=1.5e-06  Score=70.37  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+||+|+|||||+++|+|.-.+..|
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            4478999999999999999999996665555

>TIGR00101 ureG urease accessory protein UreG

Probab=98.35  E-value=8.6e-06  Score=64.53  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+|+|+|++|+|||||++.+++.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999998865

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.34  E-value=4.6e-05  Score=67.17  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.|+||||....   +..+..++.......  .++.+++|+|+.   +..  ..++.+... .... ...-+|+||.
T Consensus       183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~---~gq--~av~~a~~F-~~~~-~i~giIlTKl  250 (433)
T PRK10867        183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAM---TGQ--DAVNTAKAF-NEAL-GLTGVILTKL  250 (433)
T ss_pred             CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecc---cHH--HHHHHHHHH-HhhC-CCCEEEEeCc
Confidence            356899999997642   334444444443322  567789999975   222  222333332 1111 1356788999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       251 D~~~r  255 (433)
T PRK10867        251 DGDAR  255 (433)
T ss_pred             cCccc
Confidence            96644

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.34  E-value=7.8e-06  Score=63.38  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH----H-H
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV----G-K   91 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----~-~   91 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|....... ...... ........++...|.+.......+.+    . .
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~-~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~  101 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK-DIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK  101 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-Ecccch-HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence            345789999999999999999999976544442111000 000000 00112233455556554321111111    1 1


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeC
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      +...........++++++=-+.. .+..... .+++.+......+   ..+|+++|
T Consensus       102 qrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g---~tiii~th  153 (173)
T cd03230         102 QRLALAQALLHDPELLILDEPTS-GLDPESRREFWELLRELKKEG---KTILLSSH  153 (173)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHHHHCC---CEEEEECC
Confidence            11222222345666665554444 6666553 4445555543322   47777776

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.34  E-value=5.2e-06  Score=63.71  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSG   55 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            35578999999999999999999998765444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=1.9e-06  Score=83.25  Aligned_cols=135  Identities=17%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH-HHHH---HHHHH
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKE---IVKCL   97 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~---~~~~~   97 (277)
                      .+|||++|+||||++.. +|..++-................+..+-+..-++|||.|-.-...+..+ -..+   +...+
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            78999999999999975 3444322221111111111112223456677889999998755442222 1222   33333


Q ss_pred             hhc--CCCccEEEEEEeCCC--CCCHHHH--------HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779           98 GMA--KDGIHAFLVVFSVTN--RFSQEEE--------TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        98 ~~~--~~~~~~~l~v~d~~~--~~~~~~~--------~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~  163 (277)
                      ...  .+.++++++.+++..  ..+..+.        ..+..+.+.++...  |+.|++||.|.+..    +++|...
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~efF~~  278 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEEFFGS  278 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHHHHhc
Confidence            433  467899999999982  2222222        23455566666655  99999999998843    5555554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.30  E-value=4.4e-07  Score=75.08  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+...|.|+|++|+|||||++.+++.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35688999999999999999988764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.28  E-value=6.7e-06  Score=64.30  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRPPASG   55 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998765554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.4e-06  Score=73.20  Aligned_cols=139  Identities=20%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccce--eeEEEEE------eeeC-----------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVTK--TCEMKTT------VLKD-----------   67 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------~~t~--~~~~~~~------~~~~-----------   67 (277)
                      .+++++|...+|||||+-.|+.... +.|....             +-|.  ......+      ..|.           
T Consensus       168 vRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  168 VRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            7999999999999999999875442 1111100             1111  1111110      0011           


Q ss_pred             -CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           68 -GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        68 -~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                       .+-++++|..|.....       +.....+.  .-.+|..++|+++..+++...++.+.++..+   ++  |++|++||
T Consensus       247 SSKlvTfiDLAGh~kY~-------~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvtK  312 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQ-------KTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVTK  312 (591)
T ss_pred             hcceEEEeecccchhhh-------eeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEEe
Confidence             1347888888844211       11111122  2357999999999878877777777777765   33  99999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      +|...+  ..++..++.     +..++.+.|.+-
T Consensus       313 ~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~k  339 (591)
T KOG1143|consen  313 MDLVDR--QGLKKTVKD-----LSNLLAKAGCTK  339 (591)
T ss_pred             eccccc--hhHHHHHHH-----HHHHHhhcCccc
Confidence            999888  777777777     777877766443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.24  E-value=2.4e-05  Score=58.74  Aligned_cols=32  Identities=31%  Similarity=0.366  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG   55 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence            35578999999999999999999998764444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd00066 G-alpha G protein alpha subunit

Probab=98.24  E-value=1.5e-05  Score=67.83  Aligned_cols=74  Identities=11%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~-  135 (277)
                      +++..+.+||+.|-..           ....+..++.++++++||+|.+ .+.         ..-...+..+..++... 
T Consensus       158 ~~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~ls-d~d~~~~e~~~~nrl~esl~~f~~i~~~~~  225 (317)
T cd00066         158 IKNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALS-EYDQVLFEDESTNRMQESLNLFDSICNSRW  225 (317)
T ss_pred             ecceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEch-hcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence            4566788999999432           2222334567889999999998 331         11223344445444322 


Q ss_pred             -ccCcEEEEEeCCCCCC
Q 023779          136 -VFDYMIVVFTGGDDLE  151 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~~  151 (277)
                       ...|++|++||.|...
T Consensus       226 ~~~~pill~~NK~D~f~  242 (317)
T cd00066         226 FANTSIILFLNKKDLFE  242 (317)
T ss_pred             ccCCCEEEEccChHHHH
Confidence             2259999999999654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.23  E-value=4.2e-05  Score=60.04  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+||+|||||||+.+|.+-..+.+|
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G   57 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG   57 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence            34578999999999999999999988877766

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.23  E-value=6.5e-05  Score=57.78  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSG   56 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35678999999999999999999998765554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.22  E-value=0.00013  Score=63.07  Aligned_cols=77  Identities=18%  Similarity=0.128  Sum_probs=48.7

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.|+||.|=..   .++.+..++...-..  -.||-+|+|+|+..+  +.-....+.+.+..+     -.=||+||+|
T Consensus       183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~--~~P~E~llVvDam~G--QdA~~~A~aF~e~l~-----itGvIlTKlD  250 (451)
T COG0541         183 YDVVIVDTAGRLH---IDEELMDELKEIKEV--INPDETLLVVDAMIG--QDAVNTAKAFNEALG-----ITGVILTKLD  250 (451)
T ss_pred             CCEEEEeCCCccc---ccHHHHHHHHHHHhh--cCCCeEEEEEecccc--hHHHHHHHHHhhhcC-----CceEEEEccc
Confidence            4689999999664   356666666655443  478999999998722  122233333443332     2558899999


Q ss_pred             CCCcccccH
Q 023779          149 DLEDHEKTL  157 (277)
Q Consensus       149 ~~~~~~~~l  157 (277)
                      .....|..+
T Consensus       251 GdaRGGaAL  259 (451)
T COG0541         251 GDARGGAAL  259 (451)
T ss_pred             CCCcchHHH
Confidence            776644444

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.21  E-value=6.7e-06  Score=66.35  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999997654444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.21  E-value=4.4e-06  Score=70.49  Aligned_cols=138  Identities=16%  Similarity=0.201  Sum_probs=86.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccc--eeeEEEEEe-----------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVT--KTCEMKTTV-----------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------~~t--~~~~~~~~~-----------------   64 (277)
                      +....|+..|+..+|||||.-+|+-...- .|....             +-+  .+..++.+.                 
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            34589999999999999999888643321 111100             111  122222211                 


Q ss_pred             ---eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE
Q 023779           65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        65 ---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                         .-.++.+.|+||-|...      .+...+...+   -..+|-.++++.+..+.+...++.+-.+..+   +.  |++
T Consensus       194 ~vv~~aDklVsfVDtvGHEp------wLrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--Pvi  259 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEP------WLRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVI  259 (527)
T ss_pred             HhhhhcccEEEEEecCCccH------HHHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEE
Confidence               01134578999999552      2222233222   3567999999999888888777776665543   22  999


Q ss_pred             EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      +++||+|+..+  ..+...++.     ...++...
T Consensus       260 VvvTK~D~~~d--dr~~~v~~e-----i~~~Lk~v  287 (527)
T COG5258         260 VVVTKIDMVPD--DRFQGVVEE-----ISALLKRV  287 (527)
T ss_pred             EEEEecccCcH--HHHHHHHHH-----HHHHHHHh
Confidence            99999999987  666666665     55555443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.20  E-value=1.2e-05  Score=62.36  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+..|
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPTSG   57 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            5578999999999999999999998765554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.20  E-value=1e-05  Score=62.62  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G   57 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG   57 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            35578999999999999999999998765544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.19  E-value=4.4e-06  Score=68.69  Aligned_cols=70  Identities=26%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (277)
                      ....+.|+|-+|+|||||||++-.......+    -...+.|...... +.......++++||||...+...+.+
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence            4578999999999999999998543321111    1123444443322 22245566999999999987665544

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.18  E-value=3.5e-05  Score=60.93  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK--AFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|..  .+..|
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G   66 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG   66 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            355789999999999999999999976  54444

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>smart00275 G_alpha G protein alpha subunit

Probab=98.17  E-value=2.2e-05  Score=67.44  Aligned_cols=74  Identities=11%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~-  135 (277)
                      +.+..+.+||..|-..           ....+..++.++++++||+|++ .+.         ..-...+..+..++... 
T Consensus       181 ~~~~~~~~~DvgGqr~-----------~R~kW~~~f~~v~~IiFvvdlS-d~d~~~~Ed~~~nrl~esl~~f~~l~~~~~  248 (342)
T smart00275      181 VKKLFFRMFDVGGQRS-----------ERKKWIHCFDNVTAIIFCVALS-EYDQVLEEDESTNRMQESLNLFESICNSRW  248 (342)
T ss_pred             ECCeEEEEEecCCchh-----------hhhhHHHHhCCCCEEEEEEECc-ccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence            4566788999988321           2223334567889999999998 331         11223344555554433 


Q ss_pred             -ccCcEEEEEeCCCCCC
Q 023779          136 -VFDYMIVVFTGGDDLE  151 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~~  151 (277)
                       ...|++|++||.|...
T Consensus       249 ~~~~piil~~NK~D~~~  265 (342)
T smart00275      249 FANTSIILFLNKIDLFE  265 (342)
T ss_pred             ccCCcEEEEEecHHhHH
Confidence             2249999999999654

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.17  E-value=6e-07  Score=78.79  Aligned_cols=128  Identities=19%  Similarity=0.115  Sum_probs=68.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEe-------CCCCCCCCCCchHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID-------TPGLFDLSAGSEFVG   90 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liD-------tpG~~~~~~~~~~~~   90 (277)
                      ..-+|++|||+|+|||||++.++|.-.+..|......-....++......   -.-.|       .|-+.+     ..-.
T Consensus       415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e---~ldl~~s~le~~~~~~~~-----~~~~  486 (614)
T KOG0927|consen  415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE---QLDLDKSSLEFMMPKFPD-----EKEL  486 (614)
T ss_pred             cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh---hcCcchhHHHHHHHhccc-----cchH
Confidence            34689999999999999999999988877775443322222222110000   00111       011111     1123


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE----EeCCCCCCcccccHHHHhc
Q 023779           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv----~nk~D~~~~~~~~l~~~l~  162 (277)
                      +++...+..+  +.++-.-++..+ .++.+++..+-+.......    |-+++    +|++|...-  ..+.++++
T Consensus       487 e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiN  553 (614)
T KOG0927|consen  487 EEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAIN  553 (614)
T ss_pred             HHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHh
Confidence            3455555443  333333444454 6667776665555554444    66666    699996443  34444444

>TIGR00959 ffh signal recognition particle protein

Probab=98.16  E-value=0.00017  Score=63.64  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.|+||||...   .+..+..++......  -.++.+++|+|+..  ..........+....+     ..-+|+||+
T Consensus       182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCccc---cCHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            35689999999764   233344444444332  25688899999761  1222223233332222     356789999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       250 D~~~~  254 (428)
T TIGR00959       250 DGDAR  254 (428)
T ss_pred             cCccc
Confidence            96544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.9e-05  Score=70.39  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++++|++|+|||||+|.|.|...+..|
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G  376 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQG  376 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence            45689999999999999999999998876555

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.12  E-value=8.9e-06  Score=67.21  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G   67 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG   67 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            35578999999999999999999998765444

>PRK01889 GTPase RsgA; Reviewed

Probab=98.12  E-value=2.6e-06  Score=73.60  Aligned_cols=30  Identities=43%  Similarity=0.643  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +.+++|+|.+|+|||||+|+|+|...+.+|
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G  224 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTG  224 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhccccee
Confidence            468999999999999999999987765554

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=2.5e-06  Score=69.76  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEE----------------------------------E
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMK----------------------------------T   62 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~----------------------------------~   62 (277)
                      ..++|+-+|+...||||++++|.|.....-. .-....|...++.                                  .
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g  116 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG  116 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence            4589999999999999999999885421100 0001111111110                                  0


Q ss_pred             Ee--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh-hcCCCccEEEEEEeCCC----CCCHHHHHHHHHHHHHhCcC
Q 023779           63 TV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG-MAKDGIHAFLVVFSVTN----RFSQEEETAVHRLPNLFGKN  135 (277)
Q Consensus        63 ~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~d~~~----~~~~~~~~~~~~l~~~~~~~  135 (277)
                      ..  ..--+++.++|+||.+            +..+.- ....-.|+.++++....    +-+.+-...++..+.     
T Consensus       117 ~~~~~klvRHVSfVDCPGHD------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----  179 (466)
T KOG0466|consen  117 CEGKMKLVRHVSFVDCPGHD------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----  179 (466)
T ss_pred             CCCceEEEEEEEeccCCchH------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----
Confidence            00  0112468899999943            222211 11122377777777762    222222232232221     


Q ss_pred             ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       136 ~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                        ++++++-||+|....  ....+..++     ++.++.....   .-.+..+.||.-..+++-+.++|-+.++..
T Consensus       180 --khiiilQNKiDli~e--~~A~eq~e~-----I~kFi~~t~a---e~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  180 --KHIIILQNKIDLIKE--SQALEQHEQ-----IQKFIQGTVA---EGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             --ceEEEEechhhhhhH--HHHHHHHHH-----HHHHHhcccc---CCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence              389999999998866  333222232     5555543321   111223567778899999999999988754

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=3.3e-05  Score=66.65  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC   58 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~   58 (277)
                      -+|+||||+|+|||||+..|+|.-.+..|......+..+
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i  652 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI  652 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence            479999999999999999999987766554444434333

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.11  E-value=1.9e-05  Score=61.56  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            35578999999999999999999998765554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.11  E-value=1.9e-05  Score=63.54  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999997655444

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.10  E-value=5.5e-06  Score=75.77  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+++|++|+|||||++.|+|...+..|
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G  390 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQG  390 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            36689999999999999999999998776655

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.08  E-value=2.5e-05  Score=62.03  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .++-.++|+|++|+|||||++.|.|.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45578999999999999999999997

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.07  E-value=5.1e-06  Score=70.40  Aligned_cols=64  Identities=28%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ....++++|+|-+++||||+||+|.....-..|.. .+.|..-+..    .-+..+.|+|.||+.-...
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqeV----~Ldk~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQEV----KLDKKIRLLDSPGIVPPSI  312 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhhe----eccCCceeccCCceeecCC
Confidence            35679999999999999999999987665444432 2334333222    4567789999999875443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.06  E-value=0.0002  Score=55.43  Aligned_cols=73  Identities=19%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.++||||....   +.....++.....  ...++.+++|+++...  .........+.+..+     ..-+|+||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence            456889999997532   2223333333322  1347999999998621  222233333333222     356778999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            97755

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.06  E-value=1.3e-05  Score=64.43  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+-.++|+|++|+|||||++.|+|...+..|
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            35578999999999999999999998765555

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=1.9e-05  Score=65.16  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35578999999999999999999998765555

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.04  E-value=2.8e-05  Score=62.31  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            45678999999999999999999998765555

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.04  E-value=0.00031  Score=66.62  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..++|+|++|+|||||+++|.+.
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHH
Confidence            68999999999999999999875

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.04  E-value=4.9e-06  Score=63.38  Aligned_cols=31  Identities=32%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+.+++|+|++|+|||||+|.|.|...+.+|
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G   54 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG   54 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence            4578999999999999999999998887766

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.03  E-value=5.7e-06  Score=66.34  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-.|+|+|++|||||||+|.|.|-..+..|
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998877666

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.02  E-value=1e-05  Score=65.95  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            35578999999999999999999997655444

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.01  E-value=6.8e-05  Score=56.47  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 023779           22 VVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~   41 (277)
                      |+++|++|+|||||+..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.01  E-value=6.9e-06  Score=64.10  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779            2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++++.++.+...  .++..++|+||+|+|||||++.|+|.-.+.+|
T Consensus        12 ~Gr~ll~~vsl~~--~pGev~ailGPNGAGKSTlLk~LsGel~p~~G   56 (259)
T COG4559          12 AGRRLLDGVSLDL--RPGEVLAILGPNGAGKSTLLKALSGELSPDSG   56 (259)
T ss_pred             ecceeccCcceec--cCCcEEEEECCCCccHHHHHHHhhCccCCCCC
Confidence            3566677766655  34588999999999999999999998776665

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.01  E-value=9.2e-05  Score=57.75  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G   54 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG   54 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35678999999999999999999997654444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.01  E-value=0.00011  Score=57.99  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++..++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.00  E-value=8.5e-05  Score=66.09  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      ...+.|+|+|..++|||||+..|.|...
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e~   50 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIED   50 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccCC
Confidence            3458999999999999999999987553

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.00  E-value=7.9e-06  Score=68.75  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=58.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE--EeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|..    .....-..  .........++.+.|.+++....     .+...
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i----~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~-----~e~l~  100 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI----LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV-----RENLE  100 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE----EEcCEeCccCHHHHHhheEEEccCCCCCccccH-----HHHHH
Confidence            447899999999999999999999876554421    11000000  00112234678888887654332     22222


Q ss_pred             HHhhcCCCc--------cEEEEEE------eCC-CCCCHHHHHHHHHHHHHhCc
Q 023779           96 CLGMAKDGI--------HAFLVVF------SVT-NRFSQEEETAVHRLPNLFGK  134 (277)
Q Consensus        96 ~~~~~~~~~--------~~~l~v~------d~~-~~~~~~~~~~~~~l~~~~~~  134 (277)
                      ++...+...        +-++-.+      +.. ..++.+.++.+..+..+++.
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~  154 (293)
T COG1131         101 FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD  154 (293)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence            222221110        0000000      111 36778888888888887776

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.99  E-value=6e-05  Score=70.48  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+++|.+|||||||++.|+|...+..|
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G  528 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG  528 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35689999999999999999999998877666

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.98  E-value=7.6e-06  Score=65.27  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +.+-.|+|+|++|||||||+|.|.|-+.+.+|
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G   60 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG   60 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            45678999999999999999999988876555

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.98  E-value=4.7e-05  Score=61.09  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35688999999999999999999998765555

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.96  E-value=0.00013  Score=59.11  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++++|++|+|||||++.|.|-..+.+|
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G   59 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG   59 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence            4578999999999999999999998876665

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.96  E-value=1.1e-05  Score=66.05  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            35578999999999999999999997655444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.96  E-value=0.00024  Score=56.37  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.++|+|++|+|||||++.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            579999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.95  E-value=2.1e-05  Score=72.99  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++|+|++|+|||||++.|+|.. +..|
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G  404 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQG  404 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence            366899999999999999999999987 5555

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=6.2e-05  Score=64.98  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G   61 (351)
T PRK11432         31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG   61 (351)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence            4578999999999999999999998876665

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=97.94  E-value=3.8e-07  Score=69.05  Aligned_cols=162  Identities=16%  Similarity=0.162  Sum_probs=91.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc---eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ---VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      =.++.|+|.-|+|||+++...+-..+  +......+....... +..|+..   .+.|||..|-.           ++-.
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalk-Vl~wdd~t~vRlqLwdIagQe-----------rfg~   90 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALK-VLQWDDKTIVRLQLWDIAGQE-----------RFGN   90 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHH-HhccChHHHHHHHHhcchhhh-----------hhcc
Confidence            36899999999999999988763332  111111111111111 1124443   36699999832           3444


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-------hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL-------FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~  168 (277)
                      ....+|+.+++.++|+|++...+.+-  ...|.+++       +|.++  |++++-||+|....  ...+ .-..     
T Consensus        91 mtrVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~--a~~~-~~~~-----  158 (229)
T KOG4423|consen   91 MTRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS--AKNE-ATRQ-----  158 (229)
T ss_pred             eEEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcc--hheeccchhccChH--hhhh-hHHH-----
Confidence            44557899999999999995544433  22333333       44444  88999999996544  1111 0000     


Q ss_pred             HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +..+....     -|..-...|++.+.++++....+-.++--+
T Consensus       159 ~d~f~ken-----gf~gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  159 FDNFKKEN-----GFEGWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             HHHHHhcc-----CccceeeeccccccChhHHHHHHHHHHHhh
Confidence            22222211     122233567788888888877776655443

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.94  E-value=2.2e-06  Score=68.28  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++...+++|||+|+|||||+|.|+|...+..|
T Consensus        28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G   59 (250)
T COG0411          28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG   59 (250)
T ss_pred             cCCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence            45678999999999999999999998877665

>cd01858 NGP_1 NGP-1

Probab=97.93  E-value=6.4e-05  Score=57.26  Aligned_cols=90  Identities=10%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      +...+|++++|+|++.++...+..+.+.+... ..  ..|+++|+||+|...+  ..+..++..     +    ..... 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~-----~----~~~~~-   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI-----L----SKEYP-   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH-----H----hcCCc-
Confidence            45678999999999865555566666666653 21  1389999999998755  333333322     1    11111 


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..    ....|+..+.++..|++.+....
T Consensus        70 ~~----~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          70 TI----AFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EE----EEEeeccccccHHHHHHHHHHHH
Confidence            11    12457777888999999987764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.93  E-value=0.00025  Score=57.52  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G   65 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDDGSSG   65 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            35679999999999999999999998765554

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.93  E-value=9.4e-05  Score=64.74  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-.=+|+|.+|+|||||++.|.|...+++|
T Consensus        29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G   59 (501)
T COG3845          29 KGEIHALLGENGAGKSTLMKILFGLYQPDSG   59 (501)
T ss_pred             CCcEEEEeccCCCCHHHHHHHHhCcccCCcc
Confidence            3456789999999999999999999887776

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.92  E-value=0.0016  Score=48.80  Aligned_cols=116  Identities=14%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC---CCccc-cCCCCCcceeeEEEEEeeeCCce--EEEEeCC----------CCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR---KAFKA-SAGSSGVTKTCEMKTTVLKDGQV--VNVIDTP----------GLFDL   82 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~---~~~~~-~~~~~~~t~~~~~~~~~~~~~~~--~~liDtp----------G~~~~   82 (277)
                      ..+|++.|++|+||||++..|...   ..+.. |.......          .++..  +.++|..          |+...
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR----------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~   74 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR----------EGGKRIGFKIVDLATGEEGILARVGFSRP   74 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee----------cCCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence            479999999999999999887632   11111 11110000          11111  3344432          11111


Q ss_pred             C-----CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           83 S-----AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        83 ~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      .     ...+.+.+-...++..++..+|+++  +|--.++......+.+.+.+.+..+.  |++.++-+-+
T Consensus        75 rvGkY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~k--pliatlHrrs  141 (179)
T COG1618          75 RVGKYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGK--PLIATLHRRS  141 (179)
T ss_pred             ccceEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCC--cEEEEEeccc
Confidence            1     1112233344455555556667654  33333666666777788888876653  7777766554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.92  E-value=9.1e-06  Score=75.85  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-+++|+|++|+|||||++.|+|...+..|
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G  374 (635)
T PRK11147        343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSG  374 (635)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            35578999999999999999999998765555

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.92  E-value=0.00056  Score=59.13  Aligned_cols=154  Identities=17%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC-----------------CccccCCCCCcceeeEEEE-----EeeeC--CceEE
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK-----------------AFKASAGSSGVTKTCEMKT-----TVLKD--GQVVN   72 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~-----------------~~~~~~~~~~~t~~~~~~~-----~~~~~--~~~~~   72 (277)
                      ...+.|++|||..+||||||+.+...-                 .+.++.+..-.|+.....+     +...+  ..+++
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            455899999999999999999975432                 2334444444444332221     22112  23578


Q ss_pred             EEeCCCCCCCCCC--chHHHH------------HHHHHHhhc-----CCCcc-EEEEEEeCC-CC-----CCHHHHHHHH
Q 023779           73 VIDTPGLFDLSAG--SEFVGK------------EIVKCLGMA-----KDGIH-AFLVVFSVT-NR-----FSQEEETAVH  126 (277)
Q Consensus        73 liDtpG~~~~~~~--~~~~~~------------~~~~~~~~~-----~~~~~-~~l~v~d~~-~~-----~~~~~~~~~~  126 (277)
                      +||+.|+.=....  .+.-..            =|..+....     ..++. ++++.-|.+ ..     +-..+.+.++
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            8887776311100  000000            011111111     11222 345555544 22     2234567777


Q ss_pred             HHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779          127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (277)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
                      .|+++ |+    |++|++|-.+-...      +..+-     ..++-++.+..+.+++-.
T Consensus       175 ELk~i-gK----PFvillNs~~P~s~------et~~L-----~~eL~ekY~vpVlpvnc~  218 (492)
T PF09547_consen  175 ELKEI-GK----PFVILLNSTKPYSE------ETQEL-----AEELEEKYDVPVLPVNCE  218 (492)
T ss_pred             HHHHh-CC----CEEEEEeCCCCCCH------HHHHH-----HHHHHHHhCCcEEEeehH
Confidence            77774 54    89999997763332      11111     234556667777765543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.92  E-value=0.00033  Score=55.03  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      .....+++||+|||||||+.+|-+..-
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhcc
Confidence            347899999999999999999876543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.91  E-value=0.00011  Score=60.88  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G   79 (264)
T PRK13546         48 YEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG   79 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            35678999999999999999999998765554

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.91  E-value=7.8e-05  Score=64.89  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G   58 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSG   58 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998765555

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.91  E-value=1.9e-05  Score=65.19  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            35678999999999999999999998765555

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.90  E-value=7.3e-05  Score=54.12  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +|+++|..|+|||+++..+...
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcC
Confidence            7999999999999999998643

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.89  E-value=1.3e-05  Score=74.85  Aligned_cols=32  Identities=31%  Similarity=0.328  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-+++|+|++|+|||||++.|+|...+.+|
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G  367 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG  367 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            35679999999999999999999998766565

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.89  E-value=1.1e-05  Score=64.55  Aligned_cols=105  Identities=17%  Similarity=0.289  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      -+++++|.+.+||||++..|+|...   .......|+-..+.....+.+-.+.+.|.||+.+......-..+++..    
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia----  132 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA----  132 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE----
Confidence            4899999999999999999998653   222223344444444555788899999999998755433322233222    


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG  133 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~  133 (277)
                      ..+..+++++|+|+-.+++  -+.+++.-.+.||
T Consensus       133 vartcnli~~vld~~kp~~--hk~~ie~eleg~g  164 (358)
T KOG1487|consen  133 VARTCNLIFIVLDVLKPLS--HKKIIEKELEGFG  164 (358)
T ss_pred             EeecccEEEEEeeccCccc--HHHHHHHhhhcce
Confidence            2344488999999874433  2334444334444

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.87  E-value=8.1e-05  Score=66.81  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG   79 (549)
T PRK13545         48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG   79 (549)
T ss_pred             eCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999998765554

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.87  E-value=3.8e-05  Score=70.91  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++++|++|+||||++|.|.+-..+..|
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G  384 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG  384 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            45689999999999999999999987765444

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.86  E-value=4.9e-05  Score=58.63  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      -++|.+.|++|||||||+..++.
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~   35 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLR   35 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHH
Confidence            38999999999999999988764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.85  E-value=1.2e-05  Score=59.72  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G   40 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSG   40 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred             CCCEEEEEccCCCccccceeeeccccccccc
Confidence            3468999999999999999999998765444

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.85  E-value=0.00029  Score=56.01  Aligned_cols=24  Identities=29%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++.+++|+|++|+|||||+++|.+
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHHH
Confidence            447899999999999999999983

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.85  E-value=5.1e-05  Score=70.38  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++.+|+|+|++|+|||||++.|+|...+..|
T Consensus       360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G  390 (588)
T PRK13657        360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSG  390 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            5688999999999999999999998776555

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.85  E-value=4.9e-05  Score=60.32  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      ...++|.++.|+|.+ .-+-.....+..|..-.+   .+++.+|+||+|..
T Consensus       152 ~~~~vD~vivVvDpS-~~sl~taeri~~L~~elg---~k~i~~V~NKv~e~  198 (255)
T COG3640         152 TIEGVDLVIVVVDPS-YKSLRTAERIKELAEELG---IKRIFVVLNKVDEE  198 (255)
T ss_pred             cccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence            346789999999988 222223233333333344   35899999999954

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.84  E-value=2.8e-05  Score=68.11  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG   58 (402)
T PRK09536         27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAG   58 (402)
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            35578999999999999999999997765554

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.84  E-value=1.3e-05  Score=68.03  Aligned_cols=64  Identities=27%  Similarity=0.303  Sum_probs=42.6

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ..+.+-|++||-+|+||||+||+|-...+-...+ ..+.|...++..    --+.+.|||+||......
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence            4567889999999999999999997666522211 122232222221    235688999999976553

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.84  E-value=5.4e-05  Score=65.56  Aligned_cols=31  Identities=26%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+..|
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G   52 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG   52 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998765555

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=9.2e-05  Score=64.09  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G   59 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSG   59 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence            4568999999999999999999998766555

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.83  E-value=2.7e-05  Score=62.14  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|||||||.+.|.|-..+..|
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G   62 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSG   62 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence            35678999999999999999999998876666

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.82  E-value=1.7e-05  Score=73.27  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-----------------------------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------------------------------   62 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-----------------------------------   62 (277)
                      .-+.|+++|..++||||.++++.|..+.+.|....  |...-+..                                   
T Consensus        28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~giv--TRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~  105 (657)
T KOG0446|consen   28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIV--TRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS  105 (657)
T ss_pred             cCCceEEecCCCCcchhHHHHhhccccccccccce--ecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence            33679999999999999999999988766553211  11100000                                   


Q ss_pred             --------------------EeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHH
Q 023779           63 --------------------TVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE  120 (277)
Q Consensus        63 --------------------~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~  120 (277)
                                          .....--.++++|.||+.....  ....+..++......+...++++++.+... ...-.
T Consensus       106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~a  184 (657)
T KOG0446|consen  106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIA  184 (657)
T ss_pred             hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhh
Confidence                                0001112478999999975443  345677788888877778888887776665 22223


Q ss_pred             HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ....+..+++.-...  ..++.|+||+|....
T Consensus       185 ts~alkiarevDp~g--~RTigvitK~Dlmdk  214 (657)
T KOG0446|consen  185 TSPALVVAREVDPGG--SRTLEVITKFDFMDK  214 (657)
T ss_pred             cCHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence            344566666653222  378899999997654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.82  E-value=0.00016  Score=62.65  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+..++|+|++|+|||||++.|.|...+.+|
T Consensus        17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G   48 (363)
T TIGR01186        17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG   48 (363)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999998776555

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.82  E-value=3.9e-05  Score=72.48  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+|+|++|+|||||++.|+|...+..|
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G  508 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESG  508 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            35689999999999999999999998876665

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=5.9e-05  Score=59.93  Aligned_cols=125  Identities=16%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+++|+++|.-.+||||.-+...-...+ ...-....|......++. ..-..+.+||-||..+...+....    ..  
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsP-neTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D~----e~--   97 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFDY----EM--   97 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCC-CceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccCH----HH--
Confidence            4477999999999999998877633221 111111111111111111 122357899999987655433221    11  


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                        .+++..+++||+|+...+...-.+....+.....-....++=|.+.|+|.+.+
T Consensus        98 --iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   98 --IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             --HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence              23456899999999732222112222222332333333466688999998865

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.82  E-value=4e-05  Score=70.83  Aligned_cols=32  Identities=31%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++|+|++|+|||||++.|+|...+..|
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G  395 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG  395 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35679999999999999999999998766655

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.81  E-value=0.00019  Score=54.56  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|.|...+..|
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G   54 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSG   54 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            4478999999999999999999987654333

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.81  E-value=0.00012  Score=64.26  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070         52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            35578999999999999999999998765555

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.81  E-value=2.3e-05  Score=62.75  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35578999999999999999999998765554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.81  E-value=4.5e-05  Score=70.49  Aligned_cols=32  Identities=34%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+|+|++|+|||||++.|+|...+..|
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G  387 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSG  387 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            35689999999999999999999998876655

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.80  E-value=3.7e-05  Score=70.00  Aligned_cols=31  Identities=29%  Similarity=0.316  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+..|
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G   66 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSG   66 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998765554

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.80  E-value=2.3e-05  Score=63.89  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999998765554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.80  E-value=8.1e-05  Score=62.25  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC-------------CccccCCC----CCcceeeEEEEEe---------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK-------------AFKASAGS----SGVTKTCEMKTTV---------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~-------------~~~~~~~~----~~~t~~~~~~~~~---------------   64 (277)
                      +++..|+++|-+|+||||.|-.|....             .|..+...    ++....+.+....               
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            346899999999999999998875211             12111000    0000001111000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc---C-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA---K-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (277)
Q Consensus        65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (277)
                       ...+..+.|+||.|=...   ...+..++.+...-.   . ..||-+++++|+..+  .....-.+.+.+..+     -
T Consensus       217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~-----l  286 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVG-----L  286 (340)
T ss_pred             HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcC-----C
Confidence             012456899999996543   334455555444332   2 345779999998722  122233344444433     2


Q ss_pred             EEEEEeCCCCCCc
Q 023779          140 MIVVFTGGDDLED  152 (277)
Q Consensus       140 ~ivv~nk~D~~~~  152 (277)
                      .-+++||+|....
T Consensus       287 ~GiIlTKlDgtAK  299 (340)
T COG0552         287 DGIILTKLDGTAK  299 (340)
T ss_pred             ceEEEEecccCCC
Confidence            4578999995544

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.79  E-value=2.5e-05  Score=62.71  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG   42 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG   42 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence            4578999999999999999999998765555

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.79  E-value=0.00052  Score=54.59  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      +++..++|+|++|+|||||++.|+|...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            3557999999999999999999999765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=2.4e-05  Score=62.51  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+-+|+|+|++|+|||||++.|.|...|++|
T Consensus        51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134          51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            45689999999999999999999998887766

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.79  E-value=7.8e-05  Score=62.98  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHH--HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKC--LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      ..++|||..|...           +.+.  +..+-.-+|.-.+++-+..++-...++.+-+...+   .+  |+++|+||
T Consensus       219 KviTFIDLAGHEk-----------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL---~V--PVfvVVTK  282 (641)
T KOG0463|consen  219 KVITFIDLAGHEK-----------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL---HV--PVFVVVTK  282 (641)
T ss_pred             eeEEEEeccchhh-----------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh---cC--cEEEEEEe
Confidence            4578999988432           1111  11122446777777777766666677666655554   22  89999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +|+...  ..+.+.++.     +..++...|.
T Consensus       283 IDMCPA--NiLqEtmKl-----l~rllkS~gc  307 (641)
T KOG0463|consen  283 IDMCPA--NILQETMKL-----LTRLLKSPGC  307 (641)
T ss_pred             eccCcH--HHHHHHHHH-----HHHHhcCCCc
Confidence            998877  566666655     7777777543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.79  E-value=0.00012  Score=63.46  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G   53 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLTRPQKG   53 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999998765555

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.79  E-value=4.7e-05  Score=72.23  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+|+|++|+|||||++.|+|...+..|
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G  534 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG  534 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35689999999999999999999998776555

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.79  E-value=0.00046  Score=55.33  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-+.+|+|++|+|||||++.++|..++.++
T Consensus        56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg   86 (257)
T COG1119          56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG   86 (257)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            4467899999999999999999998875443

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.78  E-value=2.6e-05  Score=62.23  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35578999999999999999999998765555

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.78  E-value=2.6e-05  Score=62.82  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence            35578999999999999999999998765544

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.78  E-value=2.8e-05  Score=61.25  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999997665444

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.78  E-value=2.7e-05  Score=62.82  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999997655544

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.78  E-value=7.1e-05  Score=68.52  Aligned_cols=32  Identities=31%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++++|++|+|||||++.|+|...+..|
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  377 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEG  377 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35689999999999999999999998776555

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.78  E-value=2.6e-05  Score=66.11  Aligned_cols=31  Identities=35%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+||+|||||||++.|.|-..+.+|
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G   58 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG   58 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998876666

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.77  E-value=2.9e-05  Score=62.36  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35578999999999999999999998654444

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=2.6e-05  Score=66.31  Aligned_cols=143  Identities=17%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----------------------cc-------CCCCCcceeeEEEEEee
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK----------------------AS-------AGSSGVTKTCEMKTTVL   65 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~----------------------~~-------~~~~~~t~~~~~~~~~~   65 (277)
                      +.....++.++|+..+||||.-..|+......                      +.       .-..+-|+......+. 
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE-  153 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE-  153 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-
Confidence            33456899999999999999988776322100                      00       0011344455555444 


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-C----CCCHH-HHHHHHHHHHHhCcCccCc
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-N----RFSQE-EETAVHRLPNLFGKNVFDY  139 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~----~~~~~-~~~~~~~l~~~~~~~~~~~  139 (277)
                      ...+.+++.|+||.-.+.          ...+ ....++|+-++|+++. .    +|..+ +.+--..+.+..|.   ++
T Consensus       154 te~~~ftiLDApGHk~fv----------~nmI-~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~  219 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFV----------PNMI-GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KH  219 (501)
T ss_pred             ecceeEEeeccCcccccc----------hhhc-cccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ce
Confidence            456789999999966431          1222 2234668888887774 1    22222 23333345555454   38


Q ss_pred             EEEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779          140 MIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       140 ~ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      +|+++||+|....  ..+.++++...     +..++...|
T Consensus       220 lVv~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g  254 (501)
T KOG0459|consen  220 LIVLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLG  254 (501)
T ss_pred             EEEEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhc
Confidence            9999999995533  22455555554     666666555

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.77  E-value=2.8e-05  Score=62.35  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            35578999999999999999999998765554

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.76  E-value=5e-05  Score=70.48  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+|+|+|++|+|||||++.|+|...+..|
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G  396 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEG  396 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            35689999999999999999999998876655

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.76  E-value=6.2e-05  Score=69.51  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++|+|++|+|||||++.|+|...+..|
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G  370 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG  370 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            45679999999999999999999998766555

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.75  E-value=6.4e-05  Score=69.64  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++.+++|+|++|+|||||++.|+|...+..|
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G  398 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEG  398 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence            5678999999999999999999998876665

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.74  E-value=3.4e-05  Score=61.86  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG   55 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35578999999999999999999998765444

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.74  E-value=3.4e-05  Score=61.76  Aligned_cols=32  Identities=31%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35578999999999999999999997655444

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.74  E-value=3.4e-05  Score=61.90  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            35578999999999999999999998765554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.74  E-value=3.5e-05  Score=62.20  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35578999999999999999999998765554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.73  E-value=3.4e-05  Score=61.56  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4578999999999999999999998765444

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.73  E-value=3.7e-05  Score=60.93  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            35578999999999999999999997655444

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.73  E-value=9.3e-05  Score=58.95  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G   60 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSG   60 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence            35578999999999999999999998765554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.73  E-value=3.7e-05  Score=60.82  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765554

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.73  E-value=7.6e-05  Score=68.59  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++|+|++|+|||||++.|+|...+..|
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G  378 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG  378 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            36689999999999999999999998766555

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.73  E-value=3.3e-05  Score=61.90  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++|+|++|+|||||++.|+|...+..|
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   54 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSG   54 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            8999999999999999999997665454

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.73  E-value=3.8e-05  Score=61.02  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++..++|+|++|+|||||++.|+|...+..|
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            35689999999999999999999998765554

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00017  Score=64.00  Aligned_cols=138  Identities=17%  Similarity=0.036  Sum_probs=67.4

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-CC-----cceeeEEEEEeeeCCceEEEEeC---
Q 023779            6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SG-----VTKTCEMKTTVLKDGQVVNVIDT---   76 (277)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-~~-----~t~~~~~~~~~~~~~~~~~liDt---   76 (277)
                      +-.+..+.-  +.+.+|+++|++|+||||+++.|++-.- .+|... .+     .+...-...+.........+=||   
T Consensus       367 iL~gvsf~I--~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~  443 (591)
T KOG0057|consen  367 VLKGVSFTI--PKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY  443 (591)
T ss_pred             eecceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence            334433333  4568999999999999999999986433 222110 00     01000000001011111222222   


Q ss_pred             -CCCCCCCCCchHHHHHHHHHHh--hcCCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE---EeCCCC
Q 023779           77 -PGLFDLSAGSEFVGKEIVKCLG--MAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDD  149 (277)
Q Consensus        77 -pG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv---~nk~D~  149 (277)
                       -.++....+++++.+...++-.  ...+-+++. -.|-.-...+++++++.+...+.+.+..   |++++   +++.|.
T Consensus       444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD~  520 (591)
T KOG0057|consen  444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALDS  520 (591)
T ss_pred             HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccch
Confidence             2233444445554443332210  001112221 1122222468888999988888876654   77776   556653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.72  E-value=3.6e-05  Score=61.79  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4578999999999999999999997654444

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.72  E-value=3.8e-05  Score=62.02  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++-.++|+|++|+|||||++.|.|...+..|
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35678999999999999999999998765444

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		4e-32
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-27
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-26
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		4e-26
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		8e-26
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		4e-25
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		1e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-04
3bb1_A	274	Crystal Structure Of Toc34 From Pisum Sativum In Co		7e-04
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		7e-04
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		8e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               + I++FT  DDL D    L D+L  E P+ ++++  +  +R    +NK    A+  
Sbjct: 143 RARSFXILIFTRKDDLGD--TNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
            Q  QLL L+  V+ +N    YT+   + A E   K+ + 
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXYQRAEEEIQKQTQA 238

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++FG++V  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
           +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A G E   
Sbjct: 140 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 193
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
           QV QLL +V  +++++ G  Y++E+   A  LR    E + L+  ++R  +++
Sbjct: 194 QVVQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 245

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L+  +  ++++  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
           S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
           TP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
              + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +   +  +
Sbjct: 120 AMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DD 176
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
           QV++L+  +  ++++  G  YT+ L
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGL 201

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 115/202 (56%), Gaps = 5/202 (2%)
Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
           E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++   
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +   +  +QV+
Sbjct: 120 HTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DDQVK 176
Query: 199 QLLSLVNSVIVQNGGQPYTDEL 220
           +L+  +  ++++  G  YT+ L
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGL 198

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP  F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D+      K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDLNG--GSLXDYXHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L   +  ++ +  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELXDCIEDLLXEKNGDHYTNGL 218

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F      + LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTI 186

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F        LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186

>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NSI+G +    S   S   +   +  +  + G  +N+IDTPGL 
Sbjct: 41  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
           +    ++ +   I+K   + K  I   L V  +   R    ++     + + FGK +++ 
Sbjct: 99  EGGYIND-MALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
            IV  T
Sbjct: 157 AIVALT 162

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLV-----VFSVTNRF-----SQEEETAVHRLPN 130
           +  AG  +V  +       A + I  FLV     V    +R       + ++  V  +  
Sbjct: 96  E--AG--YVNHQ-------ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQ 144
Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
            FGK ++   ++V T        E + E F        LK I
Sbjct: 145 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 37  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLV-----VFSVTNRF-----SQEEETAVHRLPN 130
           +  AG  +V  +       A + I  FLV     V    +R       + ++  V  +  
Sbjct: 95  E--AG--YVNHQ-------ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQ 143
Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
            FGK ++   ++V T        E + E F        LK I
Sbjct: 144 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-68
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	1e-64
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	4e-64
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-06

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  211 bits (539), Expect = 2e-68
 Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 11  KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV 70
           K    S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 71  VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130
           + +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131

Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE 190
           +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +  
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189

Query: 191 AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMG 250
            +  +QV++L+  +  ++++  G  YT+ L       +      D   E  K     L+ 
Sbjct: 190 NQ-DDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSD---ERVKEFKQSLIK 245

Query: 251 QMQESYEDRIKRMAE 265
            M+   +     +AE
Sbjct: 246 YMET--QRSYTALAE 258

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  200 bits (509), Expect = 4e-64
 Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
            P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG 193
           +    +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK     + 
Sbjct: 142 ERARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQ- 197

Query: 194 TEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAE 233
             Q  QLL L+  V+ +N    YT+ + + A E   K+ +
Sbjct: 198 EAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQ 237

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  194 bits (495), Expect = 1e-61
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 22/236 (9%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
           E++++   K         TV++LG+ G GKS+T NS++G +  + S   +   +   +  
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
           T+   G  +N+IDTPGL +    +    + I   L      +  ++    V     + ++
Sbjct: 80  TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136

Query: 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182
             V  +   FGK ++   ++V T        E + E F        LK I      R   
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196

Query: 183 FDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
           F++                          G   +  L+  +  V        + D 
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  171 bits (435), Expect = 1e-52
 Identities = 39/237 (16%), Positives = 82/237 (34%), Gaps = 25/237 (10%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
            ++++             T++++G+ G GKS+T NSI+G +    S   S   +   +  
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   L      I   L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
           +     + + FGK +++  IV  T            ++F   +  + L ++++   +   
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197

Query: 182 LFDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
                                         G   +  L+  +  V +      + D+
Sbjct: 198 DAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDK 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 72/270 (26%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
            + V++ G  G+GK     + +        A              V    +V   +D   
Sbjct: 150 AKNVLIDGVLGSGK-----TWV--------ALD------------VCLSYKVQCKMDF-K 183

Query: 79  LFDLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +F L+  +    + +++        +  +    +      ++       +    L  L  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV---LFDNKTK-- 188
              ++  ++V     ++++  K    F    C      IL     + V   L    T   
Sbjct: 240 SKPYENCLLVL---LNVQN-AKAWNAF-NLSCK-----ILLTTRFKQVTDFLSAATTTHI 289

Query: 189 ---DEAKG--TEQVRQLLSLVNSVIVQN------GGQPYTDELKRGATELRDKKAEVDSL 237
                +     ++V+ LL        Q+         P    L   A  +RD  A  D+ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNW 347

Query: 238 KEYSKREISKLM---------GQMQESYED 258
           K  +  +++ ++          + ++ ++ 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNV 73
             +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
            D PG+   +   +           + K   + +     ++    ++ +  + +  ++  
Sbjct: 125 WDLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175

Query: 134 KNVFDYMIVVFTGGDDLEDHEK 155
           K        V T  D    +E 
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.97
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.97
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.86
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.86
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.85
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.82
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.81
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.81
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.8
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.8
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.8
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.8
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.8
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.8
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.79
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.79
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.79
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.79
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.79
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.79
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.78
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.78
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.78
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.78
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.78
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.78
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.78
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.78
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.78
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.77
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.77
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.77
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.77
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.77
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.77
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.77
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.77
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.77
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.77
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.77
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.77
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.77
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.77
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.76
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.76
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.76
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.76
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.76
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.76
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.76
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.75
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.75
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.75
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.75
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.74
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.74
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.74
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.74
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.74
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.74
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.74
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.74
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.74
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.74
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.74
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.74
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.74
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.74
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.73
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.73
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.73
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.73
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.73
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.73
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.73
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.73
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.72
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.72
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.72
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.72
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.72
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.72
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.71
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.71
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.71
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.7
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.7
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.7
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.7
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.69
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.69
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.69
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.69
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.69
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.68
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.68
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.67
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.67
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.67
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.66
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.64
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.64
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.64
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.63
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.63
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.44
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.63
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.63
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.61
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.61
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.61
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.6
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.6
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.59
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.59
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.58
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.58
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.57
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.57
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.56
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.56
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.55
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.55
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.54
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.53
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.53
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.5
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.49
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.49
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.47
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.47
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.47
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.47
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.47
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.46
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.46
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.45
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.43
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.33
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.29
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.29
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.26
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.26
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.22
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.18
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.17
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.12
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.09
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.09
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.08
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.06
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.99
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.9
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.78
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.76
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.7
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.63
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.61
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.53
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.52
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.41
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.41
2og2_A	359	Putative signal recognition particle receptor; nuc	98.41
2xxa_A	433	Signal recognition particle protein; protein trans	98.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.3
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.29
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.25
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.18
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.16
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.13
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.13
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.1
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.93
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.9
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.89
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.87
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.86
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.85
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.85
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.84
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.84
1g6h_A	257	High-affinity branched-chain amino acid transport	97.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.83
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.83
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.82
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.81
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.79
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.79
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.79
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.79
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.77
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.74
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.73
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.73
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.7
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.68
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.67
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.66
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.65
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.64
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.64
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.63
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.63
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.62
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.61
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.61
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.61
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.59
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.58
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.58
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.58
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.57
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.57
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.54
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.52
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.52
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.51
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.49
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.47
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.46
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.45
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.44
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.43
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.4
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.39
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.38
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.37
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.37
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.36
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.34
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.33
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.31
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.31
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.29
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.27
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.27
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.24
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.21
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.21
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.2
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.2
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.18
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.17
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.17
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.17
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.17
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.16
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.16
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.16
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.13
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.12
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.12
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.11
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.1
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.1
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.07
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.05
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.05
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.04
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.03
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.03
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.99
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.99
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.98
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.98
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.97
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.96
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.95
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.94
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.92
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.91
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.9
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.89
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.86
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.83
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.83
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.82
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.79
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.79
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.77
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.76
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.74
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.73
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.73
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.69
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.69
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.67
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.66
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.66
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.65
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.65
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.64
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.62
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.59
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.59
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.58
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.58
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.57
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.56
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.56
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.55
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.54
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.52
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.51
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.51
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.51
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.5
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.47
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.47
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.47
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.46
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.46
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.45
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.45
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.43
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.43
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.43
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.43
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.42
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.4
1via_A	175	Shikimate kinase; structural genomics, transferase	96.4
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.39
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.38
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.33
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.32
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.32
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.27
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.26
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.24
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.22
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.19
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.19
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.19
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.18
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.17
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.17
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.17
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.14
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.1
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.1
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.08
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.03
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.0
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.96
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.95
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.94
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.92
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.92
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.92
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	95.9
3bos_A	242	Putative DNA replication factor; P-loop containing	95.9
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.89
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.88
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.88
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.86
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.86
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.81
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.8
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.79
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.78
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.75
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.73
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.72
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.71
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.71
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.69
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.68
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.68
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.66
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.63
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.62
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.62
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.6
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.55
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.49
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.45
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.44
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.41
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.4
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.35

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=211.64  Aligned_cols=207  Identities=36%  Similarity=0.652  Sum_probs=144.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +....++|+|+|++|+|||||+|+|+|...+..+....+.|..+...... +.+..+.||||||+.+...+...+..++.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34466899999999999999999999988866654444556555555443 68889999999999988777777788888


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      .++..+++++|++|+|+|++ +++..+..++.++.+.++.....|++||+||+|....  ..+++++.. ....++.+++
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~  179 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD  179 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence            88888889999999999998 7878888888888887776555699999999998876  677777764 4456889999


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL  227 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (277)
                      .|+.+++.|++... ++....++.+|+..|..++..+++.+|.++++...++.
T Consensus       180 ~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~  231 (239)
T 3lxx_A          180 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEE  231 (239)
T ss_dssp             HHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-----------
T ss_pred             HcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence            99999999988764 34556899999999999999988888988887766553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.97  E-value=2.8e-28  Score=200.95  Aligned_cols=205  Identities=30%  Similarity=0.545  Sum_probs=156.3

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ++..+..+|+|+|++|||||||+|+|++...+.....+.+.|..+.... ..+.+..+.||||||+.+...........+
T Consensus        17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ-GSWGNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-EEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-EEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            3455679999999999999999999999886555443333444444433 347888999999999988776666666667


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe-CCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ...+..+++.+|++++|+|++ +++..+..++.++.+.++.....|+++|+| |+|...   ..+..++.......++.+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence            777777789999999999998 688888888899999887655567888877 999763   356666654333456778


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGA  224 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~  224 (277)
                      +..++.++..+.+ .+.|++.+.|+.+|++.|...+....+.+|+++.+...
T Consensus       172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~  222 (260)
T 2xtp_A          172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI  222 (260)
T ss_dssp             HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred             HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence            8889988876666 78899999999999999999998876677877765443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.89  E-value=2.4e-22  Score=169.15  Aligned_cols=181  Identities=17%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      ++++++...|+++|.+|||||||+|+|+|..+.  ..+....|+........... +..+.||||||+.+... ...+.+
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~--i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~   80 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS--IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGH   80 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc--ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHH
Confidence            445556699999999999999999999998763  22333444444343344456 88999999999987542 234555


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCcCccCcEEEEEeCCCCC-CcccccHHHHhcccCCchH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPL  169 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~nk~D~~-~~~~~~l~~~l~~~~~~~~  169 (277)
                      .+......++..+|++++|+|++.+.+..+... +..+... +    .|+++|+||+|.. ..  ..+...+..      
T Consensus        81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-~----~pvilV~NK~Dl~~~~--~~~~~~~~~------  147 (308)
T 3iev_A           81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-N----KPVIVVINKIDKIGPA--KNVLPLIDE------  147 (308)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-C----CCEEEEEECGGGSSSG--GGGHHHHHH------
T ss_pred             HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-C----CCEEEEEECccCCCCH--HHHHHHHHH------
Confidence            666666666678899999999997777777665 5555542 2    3999999999987 34  333333332      


Q ss_pred             HHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCCh
Q 023779          170 KEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD  218 (277)
Q Consensus       170 ~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~  218 (277)
                        +...++  ..++      +.|+..+.|+++|++.|...++. +...|+.
T Consensus       148 --l~~~~~~~~~i~------~vSA~~g~gv~~L~~~l~~~l~~-~~~~~~~  189 (308)
T 3iev_A          148 --IHKKHPELTEIV------PISALKGANLDELVKTILKYLPE-GEPLFPE  189 (308)
T ss_dssp             --HHHHCTTCCCEE------ECBTTTTBSHHHHHHHHHHHSCB-CCCSSCT
T ss_pred             --HHHhccCCCeEE------EEeCCCCCCHHHHHHHHHHhCcc-CCCCCCc
Confidence              333333  2233      45888899999999999999875 3334443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=1.7e-21  Score=163.14  Aligned_cols=167  Identities=18%  Similarity=0.177  Sum_probs=117.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|+|||||+|+|+|.....  .+..+.|+...........+..+.||||||+.+..   ..+...+....
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEV   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHH
Confidence            34789999999999999999999987632  22233344333333344678899999999998743   34455566666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+++..+..+++.+...+. .  .|+++|+||+|....  .. +.+.+..        +   +
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~  144 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---L  144 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---S
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---c
Confidence            677889999999999987788877777677766432 2  399999999998755  22 3222222        2   1


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..     ...+.||+.+.+++.|++.|...++.
T Consensus       145 ~~~-----~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          145 PEA-----EPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             TTS-----EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             CcC-----cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            211     11256888899999999999887754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.88  E-value=1.2e-21  Score=157.30  Aligned_cols=176  Identities=13%  Similarity=0.141  Sum_probs=116.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ....++|+|+|.+|+|||||+|+|++...........+.|............+..+.||||||+.+....... ...+..
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~  104 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAA-KAHWEQ  104 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTH-HHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhh-HHHHHH
Confidence            3456899999999999999999999886321222223344444444433345678999999998875443322 222222


Q ss_pred             HH---hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        96 ~~---~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .+   ......+|++++|+|++.+++..+..++.++.. .+    .|+++|+||+|....  ..+...+..     +...
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~  172 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALRA-----TQKS  172 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence            22   222456899999999997788878777777776 22    389999999998765  444444443     3333


Q ss_pred             Hhhc-------CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~-------~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..+       ...++      ..|++.+.++.+|++.|.+.++.
T Consensus       173 l~~~~~~~~~~~~~~~------~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          173 LDAYRDAGYAGKLTVQ------LFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHHHHHHTCCSCEEEE------EEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHhhhhcccCCCCeEE------EeecCCCcCHHHHHHHHHHhcCc
Confidence            3332       22333      45778889999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.86  E-value=2.7e-20  Score=146.19  Aligned_cols=172  Identities=16%  Similarity=0.254  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      |.....+|+|+|++|+|||||+|+|++...........+.|.......   . +..+.+|||||+.+...+... ...+.
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~   93 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWG   93 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHH
Confidence            344568999999999999999999998763222222223333333222   2 347899999998876543321 22222


Q ss_pred             HHHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .....   ....+|++++|+|++.+.+..+..++.++.. .+    .|+++|+||+|....  ..+......     +.+
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~  161 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAKV-----VRQ  161 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHHH-----HHH
Confidence            22222   2345699999999997788777766777765 22    289999999998766  445444433     443


Q ss_pred             HHhh-cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          172 ILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       172 ~~~~-~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+.. .+..++      ..|++.+.++.+|++.|.+.+.
T Consensus       162 ~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPEDELI------LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTTSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCCCceE------EEEccCCCCHHHHHHHHHHHhc
Confidence            3322 122333      4577788999999999987764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.86  E-value=1.1e-19  Score=142.51  Aligned_cols=173  Identities=16%  Similarity=0.185  Sum_probs=114.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH--HHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~   92 (277)
                      |.....+|+|+|++|+|||||+|+|++...... ....+.|......    ..+..+.+|||||+.........  ....
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHH
Confidence            445568999999999999999999998773222 1222333333222    23456889999998764432221  1112


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      +..........+|++++|+|++...+..+...+.++... +    .|+++|+||+|....  .........     +..+
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~  161 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLEE-----HRKV  161 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHHH-----HHHH
Confidence            222222233567999999999877777777777777764 2    289999999998765  455555544     5555


Q ss_pred             HhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+ ..++      +.|++.+.+++++++.|.+.+.+
T Consensus       162 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          162 FSKYGEYTII------PTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHSSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HhhcCCCceE------EEecCCCCCHHHHHHHHHHHhhc
Confidence            55433 2333      45788889999999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.85  E-value=9.7e-21  Score=155.91  Aligned_cols=154  Identities=24%  Similarity=0.308  Sum_probs=108.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+++|++|+|||||+|+|++........ ..+.|........ .+.+..+.||||||+.+.........+.+..++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSR-TMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEE-EECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            45899999999999999999999877533222 1223333333333 368889999999999876554444444444444


Q ss_pred             hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                        ...++|++++|+++. .+++..+..+++.+...++.....|+++|+||+|.....+..+++++.. ....+++++..+
T Consensus       113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~  189 (262)
T 3def_A          113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG  189 (262)
T ss_dssp             --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence              245789999998887 4677777889999999988877779999999999864434677777754 222355555443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.85  E-value=8.4e-20  Score=150.97  Aligned_cols=196  Identities=21%  Similarity=0.328  Sum_probs=125.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+++|.+|+|||||+|+|++......... .+.|........ ...+..+.||||||+.+...........+..++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~-~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEE-eeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            458999999999999999999998875333221 223333333332 357788999999999875443333333333322


Q ss_pred             hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                        ..+++|+++||++++ .+++..+..++..+...++.+.+.|+++|+||+|.....+..++++++. ....++..+...
T Consensus       116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~  192 (270)
T 1h65_A          116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG  192 (270)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence              246789999998886 3677777888888988888765669999999999875533467777653 122244333310


Q ss_pred             -C---------CeEEEEeCCCcccc---------cChhHHHHHHHHHHHHHhhcCCCCCCh
Q 023779          177 -D---------NRCVLFDNKTKDEA---------KGTEQVRQLLSLVNSVIVQNGGQPYTD  218 (277)
Q Consensus       177 -~---------~~~~~~~~~~~~s~---------~~~~~~~~L~~~i~~~~~~~~~~~~~~  218 (277)
                       +         ..+.+..+......         ........|+..|..++...+...+.+
T Consensus       193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d  253 (270)
T 1h65_A          193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD  253 (270)
T ss_dssp             TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred             hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence             0         23333333221110         111357799999999998766655443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.82  E-value=6.9e-19  Score=141.83  Aligned_cols=176  Identities=16%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+|+|++|||||||+|+|++..+....  ....|....... ....+..+.||||||+.+......... . ...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~-~-~~~  101 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGH-FDHKLNKYQIIDTPGLLDRAFENRNTI-E-MTT  101 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEE-EEETTEEEEEEECTTTTTSCGGGCCHH-H-HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeee-eecCCCeEEEEECCCCcCcccchhhhH-H-HHH
Confidence            45699999999999999999999987753221  122233333322 235677899999999865321111100 0 111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH-HhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~-~l~~~~~~~~~~~~~~  175 (277)
                      +...+..+|++++|+|++.+.+........++..+.......|+++|+||+|....  ..+.. ....     +..+...
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~-----~~~~~~~  174 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLL-----IKQILDN  174 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHH-----HHHHHHH
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHH-----HHHHHHh
Confidence            22224567999999999854332222233344443222112499999999998754  22211 1111     3444444


Q ss_pred             cC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+  ..++      .+|++.+.++.++++.|...+..
T Consensus       175 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          175 VKNPIKFS------SFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CCSCEEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCceEE------EEecccCCCHHHHHHHHHHHHHH
Confidence            44  2333      46788889999999998887644

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.81  E-value=4.4e-19  Score=146.92  Aligned_cols=173  Identities=17%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeeEEEEEe-eeCCc--eEEEEeCCCCCCCCCCch---H
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSAGSE---F   88 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~-~~~~~--~~~liDtpG~~~~~~~~~---~   88 (277)
                      ..+|+|+|.+|+|||||+|+|++...+.....    ....|+........ ..++.  .+.||||||+++......   .
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~   87 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP   87 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence            47999999999999999999998887654321    01222222222221 12333  799999999976644322   1


Q ss_pred             HH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc
Q 023779           89 VG----KEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (277)
Q Consensus        89 ~~----~~~~~~~~~---------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~  154 (277)
                      +.    ..+..++..         ...++|+++++++.. .++...+..+++.+..      ..|+++|+||+|....  
T Consensus        88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~--  159 (274)
T 3t5d_A           88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP--  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--
Confidence            22    122233321         123578999998776 4678888777776665      2399999999998766  


Q ss_pred             ccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..+...     +.+.+...+.+++.      .|+..+.++.++++.|...++.
T Consensus       160 ~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          160 EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCSE
T ss_pred             HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCCc
Confidence            566655554     56666666655443      3556678899999998887653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.81  E-value=1.1e-19  Score=140.13  Aligned_cols=163  Identities=20%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|+|||||+|+|++........ ..+.|...... ...+++..+.+|||||+.....   ..........
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLRE-HIHIDGMPLHIIDTAGLREASD---EVERIGIERA   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEE-EEEETTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeE-EEEECCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence            34899999999999999999999876421111 12223222222 2335777899999999875321   1111111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++..+|++++|+|++.+.+.....++..+.......  .|+++|+||+|....  . . .+ .           ...+
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~-~-~~-~-----------~~~~  139 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--T-L-GM-S-----------EVNG  139 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--C-C-EE-E-----------EETT
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--h-h-hh-h-----------hccC
Confidence            22356789999999998555545556666666544322  499999999996432  0 0 00 0           0011


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+      ...||+.+.++++|++.|.+.+.
T Consensus       140 ~~~------~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          140 HAL------IRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             EEE------EECCTTTCTTHHHHHHHHHHHC-
T ss_pred             Cce------EEEeCCCCCCHHHHHHHHHHHhh
Confidence            122      25688889999999999987754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.80  E-value=2.7e-19  Score=149.95  Aligned_cols=168  Identities=16%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKC   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~   96 (277)
                      +..+|+|+|++|+|||||+|+|+|.....  .+....|+.........+.+..+.+|||||+. ..   ...+...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence            34689999999999999999999987532  22233333333333444677889999999976 21   11222223333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...++..+|++++|+|++. ++..+..+++.+..     ...|+++++||+|..... ..+.+.        +..+....
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~  146 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQM  146 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTS
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhc
Confidence            3456788999999999985 88888766555542     123999999999977520 223222        33333333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +...+     .+.|++.+.++..|++.+...++.
T Consensus       147 ~~~~~-----i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          147 NFLDI-----VPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CCSEE-----EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CcCce-----EEEECCCCCCHHHHHHHHHHhCCc
Confidence            42111     245778889999999999888764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.80  E-value=2e-18  Score=135.88  Aligned_cols=172  Identities=13%  Similarity=0.074  Sum_probs=102.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      .+.+.....+|+|+|.+|||||||+|+|++........   ..|.......+ ...+..+.+|||||...          
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------   75 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETF-EKGRVAFTVFDMGGAKK----------   75 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEE-EETTEEEEEEEECCSGG----------
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEE-EeCCEEEEEEECCCCHh----------
Confidence            34555677999999999999999999999877533111   22222323323 36778899999999643          


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc---------CccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---------NVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                       +......++..+|++++|+|++.+.+....  ..++......         ....|++||+||+|....  ...+++..
T Consensus        76 -~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~  150 (199)
T 4bas_A           76 -FRGLWETYYDNIDAVIFVVDSSDHLRLCVV--KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVE  150 (199)
T ss_dssp             -GGGGGGGGCTTCSEEEEEEETTCGGGHHHH--HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             -HHHHHHHHHhcCCEEEEEEECCcHHHHHHH--HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHH
Confidence             223334567889999999999844332221  1222222211         013499999999998765  34433332


Q ss_pred             ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      . ..  +..+....+..++      .+|++.+.++.++++.|.+.+...
T Consensus       151 ~-~~--~~~~~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          151 I-LD--LTTLMGDHPFVIF------ASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             H-HT--HHHHHTTSCEEEE------ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             H-hc--chhhccCCeeEEE------EeeCCCccCHHHHHHHHHHHHHHH
Confidence            2 00  1112122222222      467888899999999998887653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.80  E-value=7.3e-19  Score=133.50  Aligned_cols=159  Identities=21%  Similarity=0.253  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+++|++|+|||||+|++++....... ...+.+........ ...+..+.+|||||......    ....+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVV-ETDRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEE-EETTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEE-EeCCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            68999999999999999999977632111 11222333333333 35777899999999876432    11233344444


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      .+..+|++++|+|++.+++..+..+..++... +    .|+++|+||+|....  .   +...        ++. ..+. 
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~--~---~~~~--------~~~-~~~~-  135 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G----KPVILVATKVDDPKH--E---LYLG--------PLY-GLGF-  135 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T----CCEEEEEECCCSGGG--G---GGCG--------GGG-GGSS-
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C----CCEEEEEECcccccc--h---HhHH--------HHH-hCCC-
Confidence            56788999999999977777776666766652 2    289999999997643  1   1111        111 2232 


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                          ....+.|++.+.++.++++.+.+.+
T Consensus       136 ----~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          136 ----GDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ----CSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ----CCeEEEecccCCChHHHHHHHHHhC
Confidence                1223668888999999999987654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.80  E-value=1.7e-18  Score=132.71  Aligned_cols=161  Identities=15%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|+|||||+|++++.........  +.+......... .++  ..+.+|||||...           +..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~   70 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT--TLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHA   70 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCC--CCSCEEEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCC--ccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hhh
Confidence            448999999999999999999997664322211  112222112222 333  3588999999543           233


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+..
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  139 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAE  139 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHH---------HHHHHH
Confidence            33456788999999999984322222 23444455544333  3899999999976431111111         334455


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+.
T Consensus       140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          140 SVGAKHY------HTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             HTTCEEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EecCCCCCCHHHHHHHHHHHHh
Confidence            5555554      4577888999999999987764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.80  E-value=1.1e-18  Score=134.77  Aligned_cols=166  Identities=17%  Similarity=0.193  Sum_probs=103.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|+|++..+.....  .+.+........ ..++..+.+|||||.......           
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------   71 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQV-TVNDKKITFLDTPGHEAFTTM-----------   71 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEE-EETTEEEEESCCCSSSSSSCS-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEE-EeCCceEEEEECCCCHHHHHH-----------
Confidence            355899999999999999999999877533221  122222222222 357788999999997653221           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ....+..+|++++|+|++.+........+..+..   ..  .|+++|+||+|........+...+..     ...+....
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~  141 (178)
T 2lkc_A           72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW  141 (178)
T ss_dssp             CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred             HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence            1235678899999999986555555554444432   22  38999999999765311122222221     10011111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..+..    ...|++.+.++++|++.|...+..
T Consensus       142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             TSSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence            111122    246888899999999999888765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.80  E-value=5.2e-19  Score=138.27  Aligned_cols=164  Identities=18%  Similarity=0.167  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .+...+|+|+|++|+|||||+|+|++...........+.  ........ ..  ...+.+|||||......         
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~---------   86 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTVY-RHDKRIKLQIWDTAGQERYRT---------   86 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC--EEEEEEEE-ETTEEEEEEEEECCSCCSSCC---------
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE--EEEEEEEE-ECCeEEEEEEEeCCCcHHHhh---------
Confidence            345589999999999999999999987653222222222  22222221 23  34689999999764322         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                        ....++..+|++++|+|++.+.+... ..++..+.......  .|++||+||+|.........+.         ...+
T Consensus        87 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~  153 (189)
T 2gf9_A           87 --ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAED---------GRRL  153 (189)
T ss_dssp             --SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred             --hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHHH---------HHHH
Confidence              12335678899999999983322222 23444455443222  3999999999976431111111         3344


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+..++      ..|++.+.++.++++.|.+.+.+
T Consensus       154 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          154 ADDLGFEFF------EASAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             HHHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            444454444      46778889999999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.79  E-value=7.7e-19  Score=135.68  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|+|||||+|+|++...........+.+.....  .. ..+  ..+.+|||||....           .
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~-----------~   78 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERF-----------R   78 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGT-----------C
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHh-----------h
Confidence            45689999999999999999999977653222211122221211  11 233  46899999995431           1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+.
T Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~  147 (179)
T 1z0f_A           79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFA  147 (179)
T ss_dssp             HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence            112223456799999999984322222 23444455543333  4999999999975431111111         33444


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+.
T Consensus       148 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          148 EENGLLFL------EASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHC
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence            55555444      4577888999999999887653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=2.2e-17  Score=136.48  Aligned_cols=165  Identities=19%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .++|+|+|++|||||||+|+|+|... ..+. ..+.|........ .+.+..+.+|||||+.+.......  ..+.....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~-~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~   77 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGN-WPGVTVEKKEGIM-EYREKEFLVVDLPGIYSLTAHSID--ELIARNFI   77 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEEE-CTTSSCEEEEEEE-EETTEEEEEEECCCCSCCCSSCHH--HHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccCC-CCCeEEEeeEEEE-EECCceEEEEeCCCccccccCCHH--HHHHHHhh
Confidence            47999999999999999999999875 3332 2234444433333 367888999999999875442221  11222211


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                       ....+|++++|+|++ .. .....++..+.+. +.   .|+++|+||+|....  ..    ..    .....+....+.
T Consensus        78 -~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~----~~----~~~~~l~~~lg~  140 (271)
T 3k53_A           78 -LDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KG----AK----IDIKKMRKELGV  140 (271)
T ss_dssp             -HTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HT----CC----CCHHHHHHHHSS
T ss_pred             -hccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cc----cH----HHHHHHHHHcCC
Confidence             236789999999998 32 1222222233332 21   399999999996533  10    11    113344445565


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .++      +.|+..+.++.++++.+...+...
T Consensus       141 ~~~------~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          141 PVI------PTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             CEE------ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             cEE------EEEeCCCCCHHHHHHHHHHHHhcc
Confidence            544      567888899999999999988654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.79  E-value=6.5e-19  Score=136.33  Aligned_cols=162  Identities=17%  Similarity=0.182  Sum_probs=100.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ++..+|+|+|++|+|||||+|+|++......  ...+.+......... .++  ..+.+|||||.....           
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------   72 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR-----------   72 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS-----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh-----------
Confidence            4558999999999999999999998765322  222333333333322 455  568999999954321           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+... ..++..+.....   ..|+++|+||+|...........         ...+.
T Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~  140 (181)
T 3tw8_B           73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA  140 (181)
T ss_dssp             SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence            222335678899999999984322222 233344444322   24999999999976441111111         23334


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+..
T Consensus       141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          141 GQMGIQLF------ETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            44454444      46788889999999998887654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.79  E-value=3.1e-19  Score=139.71  Aligned_cols=163  Identities=14%  Similarity=0.056  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+|+|++|+|||||+|+|++...+...   ...|........ .+++..+.+|||||....           ...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~   83 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKF-KSSSLSFTVFDMSGQGRY-----------RNL   83 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEE-ECSSCEEEEEEECCSTTT-----------GGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEE-EECCEEEEEEECCCCHHH-----------HHH
Confidence            46689999999999999999999987632222   122333333322 356788999999996542           122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH-
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-  173 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-  173 (277)
                      ...++..+|++++|+|++.+.+... ..++..+...... ....|+++|+||+|....  ...++..         ..+ 
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~  152 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVS---------QLLC  152 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHH---------HHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHH---------HHhC
Confidence            2345677899999999983321122 1222222222110 023499999999998654  3333222         122 


Q ss_pred             -hhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 -QLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 -~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                       .... ..+..    ...|++.+.++.+|++.|.+.+.
T Consensus       153 ~~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          153 LENIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             GGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC-
T ss_pred             hhhccCCceEE----EEccCCCCcCHHHHHHHHHHHHH
Confidence             1111 11111    24688888999999999987764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.79  E-value=4.7e-19  Score=137.28  Aligned_cols=164  Identities=22%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .....+|+++|++|+|||||+|+|++...........+.+..  ..... ..  ...+.+|||||....           
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~~-----------   74 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLA-VNDATVKFEIWDTAGQERY-----------   74 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEE-ETTEEEEEEEEECCCSGGG-----------
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEE-ECCEEEEEEEEeCCCChhh-----------
Confidence            345589999999999999999999977653322222222221  12121 23  346899999995421           


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ......++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+
T Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~  143 (181)
T 2efe_B           75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTY  143 (181)
T ss_dssp             GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHH
T ss_pred             hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHH
Confidence            1112223467799999999984332222 34444555443223  3899999999976441111111         3344


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+..++      ..|++.+.++.++++.|.+.+..
T Consensus       144 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          144 AQENGLFFM------ETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             HHHTTCEEE------ECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             HHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence            444454444      45778889999999998876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.79  E-value=2e-18  Score=132.41  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=99.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|+|||||+|+|++......     .+|........ .+.+..+.+|||||...           +...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~~   67 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETV-TYKNLKFQVWDLGGLTS-----------IRPY   67 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEE-EETTEEEEEEEECCCGG-----------GGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEE-EECCEEEEEEECCCChh-----------hhHH
Confidence            3458999999999999999999987664221     22222222222 35678899999999643           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH-HHH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK-EIL  173 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~-~~~  173 (277)
                      ...++..+|++++|+|++.+.+....  ..++......  ....|+++|+||+|....  ....+....     +. ...
T Consensus        68 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~  138 (171)
T 1upt_A           68 WRCYYSNTDAVIYVVDSCDRDRIGIS--KSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPAL  138 (171)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhc
Confidence            34467889999999999844333321  1223322221  022499999999998755  333222211     10 001


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..+      ...|++.+.++.++++.+.+.+..
T Consensus       139 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          139 KDRKWQI------FKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTSCEEE------EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCceEE------EECcCCCCcCHHHHHHHHHHHHhh
Confidence            1111122      246788889999999999887754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.79  E-value=4.8e-19  Score=156.00  Aligned_cols=181  Identities=18%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      +...+|+++|++|||||||+|+|++........ ..+.|....... ..+++..+.||||||+.+.....+.+.......
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~-~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTS-FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEE-EEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEE-EEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence            345899999999999999999999877532211 122333332222 336788899999999854332111111110000


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...++..+|++++|+|++.+.+..+..++..+... +    .|+++|+||+|.........+++...     +...+...
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~  320 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL  320 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGG
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcccC
Confidence            11133456999999999988888777666655542 2    38999999999875421223333332     33322222


Q ss_pred             C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCC
Q 023779          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (277)
Q Consensus       177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~  215 (277)
                      . ..++      ..||+.+.++.+|++.+...+.......
T Consensus       321 ~~~~~~------~~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          321 DYAPIL------FMSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             TTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             CCCCEE------EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            2 2333      4688889999999999998887654433

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.79  E-value=5.3e-19  Score=138.71  Aligned_cols=166  Identities=17%  Similarity=0.190  Sum_probs=97.1

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      .+.+...+|+|+|++|+|||||+|+|++.......  ....+......... .++  ..+.+|||||...       ...
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-------~~~   90 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-------FNS   90 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGG-------GHH
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEE-ECCeEEEEEEEeCCCcHH-------HHH
Confidence            34455689999999999999999999987653222  12222233222222 344  4689999999542       111


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      .    ...++..+|++++|+|++.+.+..+ ..++..+.......  .|++||+||+|.........++         ..
T Consensus        91 ~----~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~~---------~~  155 (192)
T 2il1_A           91 I----TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQQ---------GE  155 (192)
T ss_dssp             H----HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HH
T ss_pred             H----HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HH
Confidence            1    2223345699999999984333222 33444555543333  3999999999976431011111         23


Q ss_pred             HHHhhc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          171 EILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       171 ~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+.... +..++      ..|++.+.++.++++.|.+.+..
T Consensus       156 ~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          156 KFAQQITGMRFC------EASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            333332 33333      46788889999999999877643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.79  E-value=1.9e-19  Score=139.83  Aligned_cols=174  Identities=16%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             CCCCCCCCCCCCCCC--CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779            1 MGERVVDGDWKPTSP--SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (277)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG   78 (277)
                      ||.++.....+.+.+  ..+..+|+++|++|+|||||+|+|++........ ..+.+    .... .+++..+.+|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~----~~~~-~~~~~~~~i~Dt~G   74 (181)
T 2h17_A            1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN----VEEI-VINNTRFLMWDIGG   74 (181)
T ss_dssp             --------------------CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSS----CEEE-EETTEEEEEEEESS
T ss_pred             CCcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCcee----eEEE-EECCEEEEEEECCC
Confidence            566665544333332  3466899999999999999999999876521111 11211    1222 24678899999999


Q ss_pred             CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCccccc
Q 023779           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKT  156 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~  156 (277)
                      ....           ......++..+|++++|+|++.+.+...  ...++......  ....|+++|+||+|....  ..
T Consensus        75 ~~~~-----------~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~  139 (181)
T 2h17_A           75 QESL-----------RSSWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MT  139 (181)
T ss_dssp             SGGG-----------TCGGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred             CHhH-----------HHHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC--CC
Confidence            6532           1222345678899999999985433333  11223332211  122499999999997654  22


Q ss_pred             HHHHhcccCCchHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          157 LEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       157 l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .++....     +. + .... ..+..    ...|++.+.++.++++.|.+
T Consensus       140 ~~~i~~~-----~~-~-~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          140 VAEISQF-----LK-L-TSIKDHQWHI----QACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             HHHHHHH-----TT-G-GGCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred             HHHHHHH-----hC-c-ccccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence            2222111     00 0 1111 11111    25688888999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.79  E-value=8.3e-19  Score=155.32  Aligned_cols=186  Identities=19%  Similarity=0.211  Sum_probs=116.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|.+|+|||||+|+|++...+.... ..+.|....... ...++..+.||||||+.................
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTS-FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEE-EEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEE-EEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            456899999999999999999999876432221 122233322222 236778999999999865322111100111111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...++..+|++++|+|++.+++..+..++.++.+. +    .|++||+||||.........+++.+.     +...+...
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~  340 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL  340 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcccC
Confidence            11133556999999999988888888887777762 3    38999999999875422333443333     33333322


Q ss_pred             C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (277)
Q Consensus       177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~  220 (277)
                      + ..++      ..||+.+.++.+|++.+...+.......-...+
T Consensus       341 ~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~l  379 (456)
T 4dcu_A          341 DYAPIL------FMSALTKKRIHTLMPAIIKASENHSLRVQTNVL  379 (456)
T ss_dssp             TTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCCCEE------EEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHH
Confidence            2 2333      468888999999999999988765544433333

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.78  E-value=2.7e-18  Score=133.74  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|+|||||+|++++.. ....    .+|......... +++..+.+|||||..           ++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI----SPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC----CCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc----cccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence            456999999999999999999999876 2211    222222233232 577889999999953           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+.+..+  ...++......  ....|+++|+||+|....  ...++....     +.  +.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~  147 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LD  147 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hh
Confidence            4556789999999999984433222  11223322221  112499999999998654  333322211     00  00


Q ss_pred             hc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .. ...+..    ...|++.+.+++++++.|.+.+.+
T Consensus       148 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          148 SIRSHHWRI----QGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             GCCSSCEEE----EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hccCCceEE----EEeeCCCCCCHHHHHHHHHHHHHh
Confidence            11 111111    256788889999999999988865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.78  E-value=5.4e-19  Score=135.37  Aligned_cols=160  Identities=19%  Similarity=0.132  Sum_probs=98.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+++|++|+|||||+|+|++...........+.+....  ... ..+  ..+.+|||||....           ..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~Dt~G~~~~-----------~~   70 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQ-YQNELHKFLIWDTAGLERF-----------RA   70 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEE-ETTEEEEEEEEEECCSGGG-----------GG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEE-ECCeEEEEEEEcCCCchhh-----------hc
Confidence            348999999999999999999998765332222222222121  111 233  56889999996431           11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHH
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL  173 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~  173 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|....  ..+ .+.        ...+.
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~--~~v~~~~--------~~~~~  138 (170)
T 1z0j_A           71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV--REVMERD--------AKDYA  138 (170)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG--CCSCHHH--------HHHHH
T ss_pred             ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc--cccCHHH--------HHHHH
Confidence            11223467799999999984332222 34445555542333  389999999997643  111 111        23344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+..++      ..|++.+.++.+|++.|.+.+.
T Consensus       139 ~~~~~~~~------~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          139 DSIHAIFV------ETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             HHTTCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred             HHcCCEEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence            44454444      4577888999999999887653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.78  E-value=2.1e-18  Score=136.31  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|||||||+|+|++...........+  ......... ..  ...+.+|||||...           +..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~   72 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIY-RNDKRIKLQIWDTAGLER-----------YRT   72 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--EEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeEEEEEEE-ECCeEEEEEEEECCCchh-----------hcc
Confidence            348999999999999999999998775332222222  222222222 23  34689999999643           223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........+.         ...+..
T Consensus        73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  141 (203)
T 1zbd_A           73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSER---------GRQLAD  141 (203)
T ss_dssp             HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHHH---------HHHHHH
T ss_pred             hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence            34455678899999999983322222 23444444433222  3999999999976541111111         333444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.++.++++.|...+..
T Consensus       142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          142 HLGFEFF------EASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             HHTCEEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             HCCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            4454444      45777888999999988776643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.78  E-value=1.7e-18  Score=135.94  Aligned_cols=164  Identities=18%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|+|||||+|+|++.......  ..+.+......... .++  ..+.+|||||.....           
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------   79 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFR-----------   79 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGC-----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhh-----------
Confidence            34589999999999999999999976653222  22233333333222 444  468999999954321           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|...........         ...+.
T Consensus        80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~  148 (196)
T 3tkl_A           80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTT---------AKEFA  148 (196)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHHH---------HHHHH
Confidence            112223467799999999984222111 34445555544333  3999999999976541111111         33344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+...
T Consensus       149 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          149 DSLGIPFL------ETSAKNATNVEQSFMTMAAEIKKR  180 (196)
T ss_dssp             HHTTCCEE------EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            55555554      357778899999999998887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=1e-18  Score=137.07  Aligned_cols=165  Identities=21%  Similarity=0.136  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      +...+|+|+|++|+|||||+|+|++...........+.+........ ......+.+|||||....           ...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~   88 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERF-----------HSL   88 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGG-----------GGG
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhh-----------Hhh
Confidence            45689999999999999999999977643222222222222221211 123456899999995431           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+...
T Consensus        89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~~  157 (192)
T 2fg5_A           89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAES  157 (192)
T ss_dssp             THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHT
T ss_pred             hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence            1223467799999999984332222 33444455443222  3999999999976421111111         3444455


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++++|++.|.+.+..
T Consensus       158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          158 IGAIVV------ETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             TTCEEE------ECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             cCCEEE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence            554444      46778889999999999887643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=3e-18  Score=132.62  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+++|++|+|||||+|+|++....... ...+.+........ ..++.  .+.+|||||...           +.
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~-----------~~   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVL-DVDGVKVKLQMWDTAGQER-----------FR   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEE-EETTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEE-EECCEEEEEEEEeCCCcHH-----------HH
Confidence            34589999999999999999999977653211 11122222222211 23443  688999999543           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+..+ ..++..+.......  .|+++|+||+|.........+.         ...+.
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~  143 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLA  143 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHH
Confidence            334445678899999999984322222 34445555543333  4999999999987541111111         22333


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.+.+.+..
T Consensus       144 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          144 KEYGLPFM------ETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            44444443      45788889999999999887754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.78  E-value=2e-18  Score=133.62  Aligned_cols=166  Identities=17%  Similarity=0.102  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ....+|+++|++|+|||||+|+|++........  .+.+......... .+   ...+.+|||||...           +
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~   71 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVT-VDGDKVATMQVWDTAGQER-----------F   71 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEEC-CSSSCCEEEEEECCC----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEE-EcCCcEEEEEEEECCCChH-----------h
Confidence            456899999999999999999999766432221  1122222222222 22   34689999999432           3


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      ......++..+|++++|+|++.+.+... ..++..+.....  .....|+++|+||+|............        ..
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~  143 (182)
T 1ky3_A           72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQ  143 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HH
T ss_pred             hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HH
Confidence            3334456788999999999983322222 233444444332  012249999999999754310111111        23


Q ss_pred             HHHhh-cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          171 EILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+... .+..++      ..|++.+.+++++++.|.+.+..
T Consensus       144 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          144 ELAKSLGDIPLF------LTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence            33332 223333      45778889999999999876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.78  E-value=9.8e-19  Score=136.66  Aligned_cols=163  Identities=14%  Similarity=0.084  Sum_probs=97.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+|+|++|+|||||+|+|++.......    ..|........ ...+..+.+|||||..           .+...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~   83 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKI-TKGNVTIKLWDIGGQP-----------RFRSM   83 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEE-EETTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEE-EeCCEEEEEEECCCCH-----------hHHHH
Confidence            34589999999999999999999976643211    22332333322 3567889999999943           22223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++..-+...  ...++......  ....|++||+||+|....  ....++...     +. + .
T Consensus        84 ~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~-~-~  152 (188)
T 1zd9_A           84 WERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN-L-S  152 (188)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT-G-G
T ss_pred             HHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hC-h-h
Confidence            3334577899999999984322222  22233333221  122499999999998654  222222221     00 0 0


Q ss_pred             hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ... ..+..    ...|++.+.++.+|++.|.+.+..
T Consensus       153 ~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          153 AIQDREICC----YSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             hhccCCeeE----EEEECCCCCCHHHHHHHHHHHHHh
Confidence            011 11111    256888889999999998876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.78  E-value=9.8e-19  Score=133.85  Aligned_cols=160  Identities=18%  Similarity=0.150  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|+|++...........+.  ........ ..  +..+.+|||||....           ...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~D~~G~~~~-----------~~~   71 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA--AFLTQTVC-LDDTTVKFEIWDTAGQERY-----------HSL   71 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--EEEEEEEE-ECCEEEEEEEEeCCCcHHh-----------hhh
Confidence            489999999999999999999976643222111222  22112121 23  456899999995431           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~  140 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE---------AQSYADD  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHHH---------HHHHHHH
Confidence            2223467899999999984322222 23344444433333  3899999999975431111111         3334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      ..|++.+.++.+|++.|.+.+.
T Consensus       141 ~~~~~~------~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          141 NSLLFM------ETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHTSC
T ss_pred             cCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence            454444      4577888999999999877653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=136.57  Aligned_cols=169  Identities=20%  Similarity=0.189  Sum_probs=99.2

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee--eCCceEEEEeCCCCCCCCCCchHH
Q 023779           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFV   89 (277)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~   89 (277)
                      ...|.....+|+|+|.+|||||||+|+|++.......    ..|..........  .....+.+|||||......     
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----   87 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-----   87 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-----
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHH-----
Confidence            3345566799999999999999999999987653221    1222222222221  2345689999999765322     


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (277)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~  168 (277)
                            ....++..+|++++|+|++.+.+... ..++..+..... ....|++||+||+|...........         
T Consensus        88 ------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------  151 (201)
T 3oes_A           88 ------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVE---------  151 (201)
T ss_dssp             ------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------
T ss_pred             ------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHH---------
Confidence                  12335678899999999983222222 222222322211 1224899999999976441111111         


Q ss_pred             HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...+....+..++      ..|++.+.++.++++.|.+.+...
T Consensus       152 ~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          152 GKKLAESWGATFM------ESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            2334444455444      468888999999999998887653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.78  E-value=6.3e-18  Score=131.51  Aligned_cols=163  Identities=18%  Similarity=0.140  Sum_probs=101.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|||||||+|+|++.......  ..+.+......... .++  ..+.+|||||...           +.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence            44589999999999999999999976653221  12222222222222 344  4689999999542           23


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|..........+         ...+.
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~  142 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFA  142 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence            344556788999999999984222222 23444444443333  4999999999975431111111         33344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.+...+..
T Consensus       143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          143 QENELMFL------ETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence            44454444      45777889999999998776643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.78  E-value=3.1e-18  Score=140.21  Aligned_cols=161  Identities=15%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~   97 (277)
                      ++|+|+|++|||||||+|+|+|....... . .+.|........ .+.+..+.+|||||+.+......  ...+.+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~-~-pg~Tv~~~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN-W-PGVTVEKKTGEF-LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE-C-TTSSSEEEEEEE-EETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC-C-CCceEEEEEEEE-EECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            57999999999999999999998743222 2 344444433333 36788999999999987653210  1122232222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .. ...+|++++|+|++ .. .....+..++.+   .+  .|+++|+||+|....  ..+.   .     ....+....+
T Consensus        79 ~~-~~~~d~vi~VvDas-~~-~~~~~l~~~l~~---~~--~pvilv~NK~Dl~~~--~~~~---~-----~~~~l~~~lg  140 (256)
T 3iby_A           79 VI-DLEYDCIINVIDAC-HL-ERHLYLTSQLFE---LG--KPVVVALNMMDIAEH--RGIS---I-----DTEKLESLLG  140 (256)
T ss_dssp             HH-HSCCSEEEEEEEGG-GH-HHHHHHHHHHTT---SC--SCEEEEEECHHHHHH--TTCE---E-----CHHHHHHHHC
T ss_pred             Hh-hCCCCEEEEEeeCC-Cc-hhHHHHHHHHHH---cC--CCEEEEEEChhcCCc--CCcH---H-----HHHHHHHHcC
Confidence            21 26789999999998 31 112233333333   22  399999999996543  1110   1     1333444445


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+++      +.|++.+.|+++|++.|.+.
T Consensus       141 ~~vi------~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 CSVI------PIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred             CCEE------EEECCCCCCHHHHHHHHHhh
Confidence            5544      46888889999999999888

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=2.2e-18  Score=151.85  Aligned_cols=165  Identities=19%  Similarity=0.229  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+|+|.+|||||||+|.|++....... ...+.|....... ..+.+..+.+|||||+....  ...+...+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDT-VEWYGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEE-EEETTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEE-EEECCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            47999999999999999999987642111 1233444443333 34788899999999987531  11122344445555


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ++..+|++++|+|+..+++..+..+..+++.. +    .|+++|+||+|....    .....       ..++. ..+. 
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~-  139 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE----FEREV-------KPELY-SLGF-  139 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSS-
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCC-
Confidence            66888999999999878888887777777653 3    389999999995321    11111       12222 2231 


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                          ......||..+.|+.+|++.+...++.
T Consensus       140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          140 ----GEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence                122356889999999999999888764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=3.2e-19  Score=136.55  Aligned_cols=162  Identities=17%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|+|++.........  ..+......... .++  ..+.+|||||....           ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~-----------~~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP--TIGAAFLTQRVT-INEHTVKFEIWDTAGQERF-----------ASL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEEEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEE-ECCEEEEEEEEECCCChhh-----------hhh
Confidence            37899999999999999999997764322211  122222122222 333  36899999995431           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+..+ ..++..+......+  .|+++|+||+|....  ........    .....+...
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~v~~----~~~~~~~~~  140 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE--GGERKVAR----EEGEKLAEE  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS--SCCCCSCH----HHHHHHHHH
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--ccccCCCH----HHHHHHHHH
Confidence            2233467799999999984322222 23344444443333  389999999997643  11000000    012334344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      ..|++.+.++.++++.|.+.+
T Consensus       141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          141 KGLLFF------ETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence            454444      457778899999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.77  E-value=1.9e-18  Score=135.03  Aligned_cols=167  Identities=12%  Similarity=0.095  Sum_probs=94.9

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVG   90 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~   90 (277)
                      ..+..+..+|+|+|++|+|||||+|+|++........  ...+......... .++  ..+.+|||||..          
T Consensus        14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~----------   80 (189)
T 1z06_A           14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVD-IDGERIKIQLWDTAGQE----------   80 (189)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEE-ETTEEEEEEEEECCCSH----------
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEE-ECCEEEEEEEEECCCch----------
Confidence            3344466899999999999999999999766532221  1222222222222 344  468999999943          


Q ss_pred             HHHH-HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779           91 KEIV-KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (277)
Q Consensus        91 ~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~  168 (277)
                       .+. .....++..+|++++|+|++...+... ..++..+..... ....|+++|+||+|.........+ .        
T Consensus        81 -~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------  149 (189)
T 1z06_A           81 -RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD-L--------  149 (189)
T ss_dssp             -HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH-H--------
T ss_pred             -hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH-H--------
Confidence             122 222334567899999999983222222 234444444331 122499999999997543101111 1        


Q ss_pred             HHHHHhhcCCeEEEEeCCCcccccCh---hHHHHHHHHHHHHHh
Q 023779          169 LKEILQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVIV  209 (277)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~L~~~i~~~~~  209 (277)
                      ...+....+..++      ..|++.+   .++.++++.|.+.+.
T Consensus       150 ~~~~~~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          150 AQKFADTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHTTCCEE------ECCSSSGGGGSCHHHHHHHHC----
T ss_pred             HHHHHHHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHHh
Confidence            2334444454444      4567777   789999988876553

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.77  E-value=1.3e-18  Score=136.58  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=102.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+++|++|+|||||+|++++......    ...|...........++.  .+.+|||||...           +.
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~   85 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEE-----------YD   85 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GT
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------HH
Confidence            4558999999999999999999997764221    122322222222334444  468999999442           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc-cccHHHHhcccCCchHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~  171 (277)
                      .....++..+|++++|+|++.+.+..+  ..++..+..... .  .|+++|+||+|..... .....+        ....
T Consensus        86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~  154 (194)
T 3reg_A           86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQ--------EGDD  154 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHH--------HHHH
T ss_pred             HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHH--------HHHH
Confidence            333446788999999999984332222  334445554322 2  3999999999976430 011111        1333


Q ss_pred             HHhhcCCe-EEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          172 ILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       172 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +....+.. ++      ..|++.+.++.++++.|.+.+...
T Consensus       155 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          155 LCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHhc
Confidence            44444544 33      468888999999999998877553

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.77  E-value=2.8e-17  Score=127.36  Aligned_cols=164  Identities=17%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+|+|++|+|||||+|+|++.......    ..|...........++  ..+.+|||||......           
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------   69 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-----------   69 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence            4589999999999999999999965542221    1222222222333455  4578999999765321           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........++         ...+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~  139 (181)
T 3t5g_A           70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEE---------GKALAE  139 (181)
T ss_dssp             CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence            12234678899999999983222222 223333333322 1224999999999975431111111         334455


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ..+..++      +.|++.+.++.++++.+.+.+....
T Consensus       140 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          140 SWNAAFL------ESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             HTTCEEE------ECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             HhCCcEE------EEecCCCCCHHHHHHHHHHHHHHhc
Confidence            5555544      4678889999999999998876543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.77  E-value=1.2e-17  Score=138.23  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=106.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~   96 (277)
                      ..+|+|+|++|||||||+|+|+|... ..+. ..+.|......... +.+..+.+|||||+.+.....  ..+...+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~-~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGN-WAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCE-EEEE-CTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCc-ccCC-CCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            48999999999999999999999874 2222 22344444333333 567889999999998765211  1122233322


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .. ....+|++++|+|++ .. .....+..++.+. +    .|+++|+||+|....  ..+.   .     ....+....
T Consensus        80 ~~-~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~~---~-----~~~~l~~~l  141 (274)
T 3i8s_A           80 YI-LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIR---I-----EIDALSARL  141 (274)
T ss_dssp             HH-HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTEE---E-----CHHHHHHHH
T ss_pred             HH-hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhHH---H-----HHHHHHHhc
Confidence            21 236789999999998 32 2223444445543 2    399999999996543  1110   1     133344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +..++      +.|+..+.|+++|++.|...++..
T Consensus       142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          142 GCPVI------PLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             TSCEE------ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             CCCEE------EEEcCCCCCHHHHHHHHHHHHhcC
Confidence            55444      468888999999999998877643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.77  E-value=6.7e-19  Score=134.84  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=97.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|+|||||+|+|++........  .+.+......... .++  ..+.+|||||......           
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~-----------   67 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRT-----------   67 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSC-----------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhh-----------
Confidence            34899999999999999999999776532221  1222222222222 333  3688999999643221           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|....  ....+.        ...+..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~  135 (170)
T 1g16_A           68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAK  135 (170)
T ss_dssp             CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHH
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHH
Confidence            11123457799999999983322222 34445555544333  399999999997433  111111        233334


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+.+
T Consensus       136 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          136 ELGIPFI------ESSAKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             HHTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            4454443      45778889999999999888765

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.77  E-value=1.2e-18  Score=138.93  Aligned_cols=161  Identities=18%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+|+|.+|||||||++.++...+.....+..+  ........ ..++  ..+.||||+|....           ..
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig--~d~~~k~~-~~~~~~v~l~iwDtaGqe~~-----------~~   77 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--IDFLSKTM-YLEDRTIRLQLWDTAGLERF-----------RS   77 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEE-ECSSCEEEEEEECCSCTTTC-----------GG
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc--eEEEEEEE-EecceEEEEEEEECCCchhh-----------hh
Confidence            458999999999999999999986654222111111  11111111 1333  35789999996532           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++++++++++|+|++.+-+... ..++..+....+.++  |++||+||+|.........++         ...+..
T Consensus        78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a~  146 (216)
T 4dkx_A           78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAK  146 (216)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHHH
Confidence            23345678899999999984333322 455566666666554  999999999975431112221         233444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ++||+.+.+++++++.|.+.+.
T Consensus       147 ~~~~~~~------e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          147 ELNVMFI------ETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             HHTCEEE------EEBTTTTBSHHHHHHHHHHHC-
T ss_pred             HhCCeeE------EEeCCCCcCHHHHHHHHHHHHH
Confidence            5555544      5789999999999999887664

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=7.3e-19  Score=137.70  Aligned_cols=164  Identities=15%  Similarity=0.110  Sum_probs=101.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|+|++|+|||||+|+|++..+........+.+........ ......+.||||||.           ..+....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~-----------~~~~~~~   89 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQ-----------ERYRTIT   89 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHH-----------HHCHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCh-----------HHHHHHH
Confidence            4589999999999999999999976542222111122222222211 124457999999992           2333344


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+-+... ..++..+.......  .|++||+||+|.........+.         ...+....
T Consensus        90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  158 (191)
T 3dz8_A           90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTEK---------GQLLAEQL  158 (191)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHHHc
Confidence            445678899999999983222221 34455555543233  3999999999975431111111         23344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ..|++.+.++.++++.|.+.+..
T Consensus       159 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          159 GFDFF------EASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            55444      45788889999999999887754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.77  E-value=1.7e-17  Score=135.96  Aligned_cols=164  Identities=19%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|||||||+|+|+|..... +.. .+.|........ ...+..+.+|||||..+......  .+.+...+
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~-pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~   78 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYV-ANW-PGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSI--DEKIARDY   78 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEE-EEC-TTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcc-cCC-CCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence            34789999999999999999999977532 222 244544443333 35678899999999986543221  12222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .. ...+|++++|+|++ .+.. ...   ++..+...+  .|+++|+||+|....  ..+    .    .....+....+
T Consensus        79 ~~-~~~~d~ii~V~D~t-~~~~-~~~---~~~~l~~~~--~pvilv~NK~Dl~~~--~~i----~----~~~~~l~~~lg  140 (258)
T 3a1s_A           79 LL-KGDADLVILVADSV-NPEQ-SLY---LLLEILEME--KKVILAMTAIDEAKK--TGM----K----IDRYELQKHLG  140 (258)
T ss_dssp             HH-HSCCSEEEEEEETT-SCHH-HHH---HHHHHHTTT--CCEEEEEECHHHHHH--TTC----C----BCHHHHHHHHC
T ss_pred             Hh-hcCCCEEEEEeCCC-chhh-HHH---HHHHHHhcC--CCEEEEEECcCCCCc--cch----H----HHHHHHHHHcC
Confidence            11 15789999999998 4322 222   333332223  399999999996533  111    0    11444555556


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+++      +.|++.+.|+.+|++.+......
T Consensus       141 ~~vi------~~SA~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          141 IPVV------FTSSVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             SCEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             CCEE------EEEeeCCcCHHHHHHHHHHHhhc
Confidence            5544      46788889999999999988753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.77  E-value=7.9e-18  Score=132.99  Aligned_cols=165  Identities=16%  Similarity=0.144  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|+|||||+|.|++..+....  ..+.+........ ..++  ..+.||||||...           +.
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~-----------~~   92 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTL-EIQGKRVKLQIWDTAGQER-----------FR   92 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEE-EETTEEEEEEEECCTTCGG-----------GH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEE-EECCEEEEEEEEECCCcHh-----------HH
Confidence            34589999999999999999999976642211  1111112222222 2344  4789999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+... ..++..+......+  .|++||+||+|.........++         ...+.
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~  161 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLA  161 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHH
Confidence            223334577899999999983222221 23444455443233  3999999999976431011111         33444


Q ss_pred             hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ...+. .++      .+|++.+.++.++++.|.+.+....
T Consensus       162 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          162 EHYDILCAI------ETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             HHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            55554 443      4678888999999999988776543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.77  E-value=9.7e-19  Score=136.99  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=96.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|+|||||+|+|++........  ...+......... .++  ..+.+|||||......           
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------   85 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVN-IDGKQIKLQIWDTAGQESFRS-----------   85 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEE-ETTEEEEEEEECCTTGGGTSC-----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCchhhhh-----------
Confidence            45799999999999999999999766532221  1122222222222 344  4689999999543221           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|++||+||+|.........++         ...+..
T Consensus        86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~  154 (191)
T 2a5j_A           86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREE---------GEAFAR  154 (191)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHHH---------HHHHHH
Confidence            11123457799999999983222222 23444444433323  3999999999976431011111         233444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+.
T Consensus       155 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          155 EHGLIFM------ETSAKTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             HHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            4455444      3577788999999999877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.77  E-value=1.1e-17  Score=130.80  Aligned_cols=164  Identities=15%  Similarity=0.108  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------ceEEEEeCCCCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------QVVNVIDTPGLFDLSAG   85 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------~~~~liDtpG~~~~~~~   85 (277)
                      +...+|+|+|++|+|||||+|+|++.........  ...............+           ..+.+|||||...    
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence            4558999999999999999999997664222111  1111111011112232           4789999999642    


Q ss_pred             chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                             +......++..+|++++|+|++.+.+..+ ..++..+..... ....|+++|+||+|.........+.     
T Consensus        83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~-----  149 (195)
T 3bc1_A           83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEE-----  149 (195)
T ss_dssp             -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHH-----
T ss_pred             -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHH-----
Confidence                   23334456788999999999984322222 334444444322 1224999999999976431011111     


Q ss_pred             CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                          ...+....+..++      ..|++.+.++.++++.|...+.
T Consensus       150 ----~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          150 ----ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             ----HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHH
Confidence                3334444454444      4577788999999999887764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.77  E-value=3.6e-18  Score=130.12  Aligned_cols=158  Identities=13%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|++|+|||||+|++++......     .+|........ ...+..+.+|||||...           +......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDK-----------IRPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEE-ECSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEE-EECCEEEEEEEcCCChh-----------hHHHHHH
Confidence            4799999999999999999987654221     12222222222 24678899999999643           2223334


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ++.++|++++|+|++.+-+...  ...++......  ....|+++|+||+|....  ...++....     +.  .....
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~  132 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR  132 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred             HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence            5688899999999984322222  22333333221  112499999999998654  333222221     00  01111


Q ss_pred             -CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       178 -~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                       ..+.    ...+|++.+.++.++++.|.+.+.
T Consensus       133 ~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          133 HRNWY----IQATCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             SCCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             CccEE----EEEcccCCCcCHHHHHHHHHHHHh
Confidence             1111    125688888999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.77  E-value=6.6e-18  Score=128.89  Aligned_cols=160  Identities=21%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|++++.......  +...++....   ...++  ..+.+|||||...           +...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~-----------~~~~   65 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRS---IVVDGEEASLMVYDIWEQDG-----------GRWL   65 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEE---EEETTEEEEEEEEECC-------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEE---EEECCEEEEEEEEECCCCcc-----------chhh
Confidence            478999999999999999999976643221  1122222111   12333  3578999999553           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........+.         ...+...
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~  135 (166)
T 3q72_A           66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVV  135 (166)
T ss_dssp             -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHH
T ss_pred             hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHH
Confidence            3345678899999999983322222 223333333211 1224999999999976541111111         2233344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      +.|++.+.+++++++.+.+.+..
T Consensus       136 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          136 FDCKFI------ETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             TTCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hCCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence            454444      46888889999999999887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.77  E-value=5.3e-19  Score=139.46  Aligned_cols=168  Identities=15%  Similarity=0.071  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|++|+|||||+|+|++..+........+.+...  .... .++  ..+.||||||....       .....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~l~i~Dt~G~~~~-------~~~~~   95 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLI-VDGERTVLQLWDTAGQERF-------RSIAK   95 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEE-ETTEEEEEEEEECTTCTTC-------HHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEE-ECCEEEEEEEEECCCCcch-------hhhHH
Confidence            456899999999999999999999766422211111112111  1111 333  45899999996542       11122


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                          .++..+|++++|+|++.+.+..+ ..++..+.......  .|++||+||+|....  ...+ ....-.......+.
T Consensus        96 ----~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~-~~~~v~~~~~~~~~  166 (199)
T 2p5s_A           96 ----SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATE-GQKCVPGHFGEKLA  166 (199)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHT-TCCCCCHHHHHHHH
T ss_pred             ----HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccc-cccccCHHHHHHHH
Confidence                22345699999999984322222 33444455443223  399999999997522  0000 00000001123344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+..++      +.|++.+.++.+++..|.+.+.
T Consensus       167 ~~~~~~~~------~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          167 MTYGALFC------ETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcCCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence            44455444      4577888999999999887764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=133.00  Aligned_cols=168  Identities=18%  Similarity=0.121  Sum_probs=93.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|||||||+|+|++.......    ..|...........++.  .+.+|||||...           +..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY----TPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-----------YDR   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCchh-----------hhH
Confidence            4589999999999999999999987642221    11222222212223443  588999999543           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----c-CCch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----E-CPKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~-~~~~  168 (277)
                      ....++..+|++++|+|++.+.+....  .++..+..... .  .|++||+||+|....  ....+.+..    . ....
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  172 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR  172 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence            333456788999999999833222221  34444544332 2  399999999998765  333222210    0 0011


Q ss_pred             HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...+....+. .++      .+|++.+.++.++++.|.+.+...
T Consensus       173 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          173 GQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             HHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence            3445555554 444      468888899999999998877653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.77  E-value=5.9e-18  Score=134.87  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...+|+++|++|+|||||+++|++........     ++........ ++   +..+.+|||||...           +.
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~-----------~~   68 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYK-VNNNRGNSLTLIDLPGHES-----------LR   68 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEE-CSSTTCCEEEEEECCCCHH-----------HH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEE-ecCCCccEEEEEECCCChh-----------HH
Confidence            45899999999999999999999766422221     1112222222 34   56799999999542           22


Q ss_pred             H-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779           95 K-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        95 ~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~  152 (277)
                      . ....++.++|++++|+|++ .+.........++...+    ......|++||+||+|....
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           69 FQLLDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            2 2333467889999999998 43222233333333321    11222499999999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.77  E-value=3.2e-18  Score=135.65  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|+|||||+|+|++........  .+.+......... .++  ..+.||||||......          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~----------   72 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRT----------   72 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHH----------
Confidence            345899999999999999999999876532221  2222222222222 344  3689999999654321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                       ....++..+|++++|+|++.+.+... ..++..+.......  .|++||+||+|.........+.         ...+.
T Consensus        73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~  140 (206)
T 2bcg_Y           73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFA  140 (206)
T ss_dssp             -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHH
Confidence             12335678899999999984322222 23344444443332  4899999999986531111111         23344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.|...+..
T Consensus       141 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          141 DANKMPFL------ETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             HHTTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            44454444      45777889999999999887754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.77  E-value=6.9e-18  Score=130.17  Aligned_cols=164  Identities=18%  Similarity=0.079  Sum_probs=99.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+++|++|+|||||+|+|++........  .+.+........ ..++  ..+.+|||||...           +.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~-----------~~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDL-EVDGHFVTMQIWDTAGQER-----------FR   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEE-EETTEEEEEEEEECCCCGG-----------GH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEE-EECCEEEEEEEEeCCCchh-----------hh
Confidence            345899999999999999999999766422211  111222212222 2344  3689999999442           23


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .....++..+|++++|+|++.+.+... ..++..+......  ....|+++|+||+|..... ...++         ...
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~  140 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA  140 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence            344556788999999999983322222 3344444444321  1224999999999976331 11211         223


Q ss_pred             HHh-hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +.. ..+..++      ..|++.+.++.++++.+.+.+..
T Consensus       141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          141 WCRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            333 2223333      46788889999999999887654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=2.5e-18  Score=131.82  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=96.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|+|++...........+.+..    ......+  ..+.+|||||....       ...... 
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~-   70 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQF-------PAMQRL-   70 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSC-------HHHHHH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhh-------HHHHHH-
Confidence            489999999999999999999987643222221222211    1112233  35889999997642       111122 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                         ++..+|++++|+|++.+.+... ..++..+....+.....|+++|+||+|....  ..+...       ....+...
T Consensus        71 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~  138 (172)
T 2erx_A           71 ---SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART  138 (172)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             ---hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence               2334699999999983322222 3444555554432223499999999997643  111110       02223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.++++.|.+.+..
T Consensus       139 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          139 WKCAFM------ETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             HTCEEE------ECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             hCCeEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence            444443      45778889999999999876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=135.65  Aligned_cols=163  Identities=18%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ...+|+|+|++|+|||||+|+|++........  ............. ......+.+|||||......           .
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~   90 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-----------I   90 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------T
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------h
Confidence            45899999999999999999999876532221  1112222111111 11234689999999865321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+... ..++..+......  ..|+++|+||+|...........         ...+...
T Consensus        91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  159 (193)
T 2oil_A           91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTEE---------ARMFAEN  159 (193)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHHH---------HHHHHHH
Confidence            1223467799999999983222111 2333333332222  24899999999976431111111         3334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.++++.|.+.+..
T Consensus       160 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          160 NGLLFL------ETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            455444      35777889999999998776643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.76  E-value=1.4e-17  Score=126.94  Aligned_cols=161  Identities=18%  Similarity=0.152  Sum_probs=95.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|++++........    .|............+.  .+.+|||||....       ...... 
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~-   70 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDL-   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHH-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHHHHH-
Confidence            4799999999999999999999766432211    1211111112223443  4889999996542       111112 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                         ++..+|++++|+|+..+.+... ..++..+..... ....|+++|+||+|...........         ...+...
T Consensus        71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T 1kao_A           71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAEE  137 (167)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence               2345599999999983222222 233333443322 1234999999999975431011111         2333344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|++.+.++.++++.|.+.+.+
T Consensus       138 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          138 WGCPFM------ETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence            444444      45788899999999999887643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=128.42  Aligned_cols=164  Identities=21%  Similarity=0.186  Sum_probs=92.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|||||||+|+|++........ ..+.+....  .. ..++.  .+.+|||||....         +...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~~~~~D~~g~~~~---------~~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYER--TL-TVDGEDTTLVVVDTWEAEKL---------DKSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEE--EE-EETTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEE--EE-EECCEEEEEEEEecCCCCcc---------chhh
Confidence            45899999999999999999999876532221 222222221  12 23443  5889999996541         0111


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++         ...+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~  139 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV  139 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence            22335678899999999983322222 233333433211 1124999999999986541111111         222333


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+..
T Consensus       140 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          140 VFDCKFI------ETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHTSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence            3344443      46888889999999999877643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.76  E-value=4.2e-18  Score=134.37  Aligned_cols=160  Identities=16%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC----------------------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------   68 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------   68 (277)
                      ++..+|+|+|++|+|||||+|+|++........  ............. ..+                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEE-TTC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence            355899999999999999999999876532211  1111111111111 222                            


Q ss_pred             -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCc
Q 023779           69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNV  136 (277)
Q Consensus        69 -----------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~  136 (277)
                                 ..+.||||||......           ....++..+|++++|+|++.+.+..+ ..++..+....+   
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---  147 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---  147 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred             ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence                       5789999999543211           12223467799999999984322222 233444444333   


Q ss_pred             cCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       137 ~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                       .|+++|+||+| ........++         +..+....+..++      ..|++.+.++.++++.|.+.+..
T Consensus       148 -~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          148 -YIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -CcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence             49999999999 4221122222         3445555555544      45777889999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.76  E-value=2e-17  Score=130.78  Aligned_cols=165  Identities=20%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +..+..+|+|+|++|||||||+|+|++..+....    ..|...........++.  .+.||||||....       ...
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~   78 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAI   78 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HHH
Confidence            4445689999999999999999999976642221    12222222222224443  6889999996642       111


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .    ..++..+|++++|+|++...+... ..++..+..... ....|++||+||+|.........++         ...
T Consensus        79 ~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~  144 (206)
T 2bov_A           79 R----DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKN  144 (206)
T ss_dssp             H----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred             H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHH
Confidence            1    122345699999999983222222 233444444332 1124999999999976531112221         333


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +....+..++      ..|++.+.+++++++.|.+.+..
T Consensus       145 ~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          145 RAEQWNVNYV------ETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            4444454444      45777788999999998887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.76  E-value=2.6e-18  Score=136.73  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +.+...+|+|+|++|+|||||+|+|++........  .+.+......... .++  ..+.||||||......        
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~--------   84 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRT--------   84 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--CCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTC--------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH--------
Confidence            34556899999999999999999999766432221  2222222222222 455  4689999999543211        


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                         ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|....  ....+.        ...
T Consensus        85 ---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~  149 (213)
T 3cph_A           85 ---ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEA  149 (213)
T ss_dssp             ---CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHH
T ss_pred             ---HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHH
Confidence               11223467799999999983222222 34445555544333  399999999997433  111111        223


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +....+..++      ..|++.+.++.++++.|...+..
T Consensus       150 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          150 LAKELGIPFI------ESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHHTCCEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            3344444443      45777888999999998877654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.76  E-value=7.3e-18  Score=131.36  Aligned_cols=160  Identities=19%  Similarity=0.181  Sum_probs=95.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||+|+|++.......    ..|...........++..  +.+|||||......       .... 
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~-   71 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ-   71 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCC----CTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHH-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHH-
Confidence            489999999999999999999976642221    122222222222345544  77899999664321       1111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                         ++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|....  ....+.        ...+...
T Consensus        72 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~~  137 (189)
T 4dsu_A           72 ---YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLARS  137 (189)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHHHH
T ss_pred             ---HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHHHH
Confidence               2234699999999983322222 233344444322 223499999999998654  222222        2334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      ..|+..+.++.++++.|.+.+..
T Consensus       138 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          138 YGIPFI------ETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            454444      45778889999999999887754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.76  E-value=2.7e-17  Score=127.16  Aligned_cols=165  Identities=17%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +.....+|+++|++|+|||||+|+|++......    ...|+..........++  ..+.+|||||.......       
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------   73 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-------   73 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-------
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-------
Confidence            445668999999999999999999997754221    12232222222233454  36889999997653221       


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      ...+    +..+|++++|+|++.+.+... ..++..+.... ...  .|+++|+||+|....  ..+...       ...
T Consensus        74 ~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~~-------~~~  138 (181)
T 2fn4_A           74 REQY----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQ--RQVPRS-------EAS  138 (181)
T ss_dssp             HHHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGG--CCSCHH-------HHH
T ss_pred             HHHH----HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccc--cccCHH-------HHH
Confidence            1122    234599999999983222222 23333332222 222  499999999997643  111100       022


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .+....+..++      ..|++.+.++.++++.|.+.+...
T Consensus       139 ~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          139 AFGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence            33344444444      457788899999999998877553

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=1.5e-17  Score=140.53  Aligned_cols=176  Identities=13%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCC---cceee---------------------------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSG---VTKTC---------------------------------   58 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~---~~~---~t~~~---------------------------------   58 (277)
                      ...+|+|+|++|+|||||+|+|+|...++.+..   ..+   .++..                                 
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            447899999999999999999999876444321   111   01110                                 


Q ss_pred             ------------------EEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCC
Q 023779           59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF  117 (277)
Q Consensus        59 ------------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~  117 (277)
                                        ....+....+..+.||||||+.....  ....+...+......++..+|++++|+|.. ..+
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                              00001112346799999999975221  111223344444555566789999999974 444


Q ss_pred             CHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccC---
Q 023779          118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---  193 (277)
Q Consensus       118 ~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---  193 (277)
                      ...+ ..++.++.. .    ..|+++|+||+|..... ..+.+.+..        .+..++..++.+...   ++..   
T Consensus       183 ~~~~~~~i~~~~~~-~----~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~~---sa~~~~~  245 (315)
T 1jwy_B          183 ANSDALQLAKEVDP-E----GKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVINR---SQEDIIA  245 (315)
T ss_dssp             TTCSHHHHHHHHCS-S----CSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCCC---CHHHHSS
T ss_pred             hhhHHHHHHHHhCC-C----CCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEecC---Chhhhcc
Confidence            4333 344444433 1    23999999999987551 112222221        001112344443333   4444   


Q ss_pred             hhHHHHHHHHHHHHHhh
Q 023779          194 TEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       194 ~~~~~~L~~~i~~~~~~  210 (277)
                      +.++.++++.+..+++.
T Consensus       246 ~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          246 KKSIRESLKSEILYFKN  262 (315)
T ss_dssp             SCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhC
Confidence            57889999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=5e-18  Score=134.13  Aligned_cols=162  Identities=15%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|||||||+|+|++..+....  ..+.+......... .++  ..+.+|||||..           .+..
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~   90 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRS   90 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence            4579999999999999999999976642211  11222222222222 444  368899999943           2334


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|+++|+||+|.........++         ...+..
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~  159 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSE  159 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence            45566789999999999983322211 34445555443333  3899999999976431011111         223333


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ++|++.+.++.++++.|.+.+..
T Consensus       160 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          160 AQDMYYL------ETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            3444443      46788889999999998876643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.76  E-value=2.9e-18  Score=133.15  Aligned_cols=162  Identities=14%  Similarity=0.106  Sum_probs=78.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|+|||||+|++++.......  ..+.+........ ..++  ..+.+|||||...           +..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~~~   72 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER-----------FRT   72 (183)
T ss_dssp             EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEE-EETTEEEEEEEEEC-------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEE-EECCEEEEEEEEcCCCChh-----------hhh
Confidence            4589999999999999999999976542111  0111112222222 2455  5689999999542           223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+......+  .|++||+||+|.........++         ...+..
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~  141 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLAL  141 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHH
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHHHH
Confidence            33456788999999999984322222 23444444433333  3999999999976531111111         333444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.++.++++.|...+..
T Consensus       142 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          142 DYGIKFM------ETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             HHTCEEE------ECCC---CCHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            4454444      45778888999999998776643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.76  E-value=2.2e-17  Score=128.96  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=95.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+++|.+|||||||+|+|++.......    ..|...........++.  .+.+|||||...           +..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~   84 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSA   84 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHH-----------HHH
Confidence            4579999999999999999999976542211    11222222222224443  488999999543           223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|+....+..+ ..++..+..... ....|++||+||+|..... ...++         ...+..
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~  153 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VDTKQ---------AHELAK  153 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SCHHH---------HHHHHH
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CCHHH---------HHHHHH
Confidence            33445678899999999983322222 233444444332 1124999999999976531 11111         333444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..+..++      ..|+..+.++.++++.|.+.+...
T Consensus       154 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          154 SYGIPFI------ETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            4454443      457778899999999998877653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.76  E-value=1.2e-17  Score=127.33  Aligned_cols=161  Identities=20%  Similarity=0.176  Sum_probs=95.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+++|++|+|||||+|+|++.......    ..|...........++  ..+.+|||||....           ..
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----------~~   67 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----------AA   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---C-----------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchh-----------HH
Confidence            4589999999999999999999976642221    1122221221122344  36889999995531           11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+...... ...|+++|+||+|.........++         ...+..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAD  137 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHHH
Confidence            12223345699999999983322222 2334444444331 124999999999976431111211         233444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ..|++.+.++.++++.+.+.+.
T Consensus       138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          138 QWNVNYV------ETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence            4454444      4577788999999999987764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.76  E-value=1.4e-17  Score=129.53  Aligned_cols=163  Identities=20%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+..+|+|+|++|+|||||+|+|++.......    ..|............+  ..+.+|||||....       .....
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~   84 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRD   84 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHHHH
Confidence            35689999999999999999999976642221    1122222222222444  36889999996542       11112


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .    ++..+|++++|+|++...+... ..++..+...... ...|++||+||+|.........++         ...+.
T Consensus        85 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  150 (187)
T 2a9k_A           85 N----YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA  150 (187)
T ss_dssp             H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             H----HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence            2    2345699999999983222122 2334444444331 124999999999976431111111         33444


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+..
T Consensus       151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHH
Confidence            55555444      45777888999999999877643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=131.48  Aligned_cols=173  Identities=17%  Similarity=0.105  Sum_probs=98.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHH
Q 023779           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFV   89 (277)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~   89 (277)
                      ...+.....+|+++|++|+|||||+|.+++... ...   ...|+..........++.  .+.+|||||......     
T Consensus        13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----   83 (201)
T 2q3h_A           13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE---YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-----   83 (201)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-----
T ss_pred             cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-----
Confidence            344456679999999999999999999998763 222   122222222222234554  567999999765321     


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----
Q 023779           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----  163 (277)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----  163 (277)
                            ....++.++|++++|+|++.+.+..+.  .++..+.....   ..|++||+||+|....  ......+..    
T Consensus        84 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~  152 (201)
T 2q3h_A           84 ------LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED--VKVLIELDKCKEK  152 (201)
T ss_dssp             ------SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC--HHHHHHHHTTTCC
T ss_pred             ------HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc--hhhhhhhcccccc
Confidence                  122356788999999999843322222  34444555432   2499999999997653  111111100    


Q ss_pred             cC-CchHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          164 EC-PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       164 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .. ......+....+. .++      .+|++.+.++.++++.|...+..
T Consensus       153 ~v~~~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          153 PVPEEAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CCCHHHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHHhc
Confidence            00 0113334444443 333      46888889999999998877644

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.75  E-value=6.3e-19  Score=140.95  Aligned_cols=166  Identities=17%  Similarity=0.159  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|.+|||||||+|+|++...........+.+  ..........+  ..+.+|||||.......         
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------   77 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL---------   77 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence            355899999999999999999999766432211111111  11111121222  46899999996543211         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                        ...++..+|++++|+|++.+.+..+ ..++..+......+  .|+++|+||+|....  ..+...       ....+.
T Consensus        78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~  144 (218)
T 4djt_A           78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISKK-------LVMEVL  144 (218)
T ss_dssp             --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCHH-------HHHHHT
T ss_pred             --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHH
Confidence              1112456799999999984433222 34445555555443  399999999997643  111100       022233


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ...+..++      ..|++.+.++.++++.|.+.+....
T Consensus       145 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          145 KGKNYEYF------EISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             TTCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             HHcCCcEE------EEecCCCCCHHHHHHHHHHHHhccc
Confidence            33344444      4577888999999999999887644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=4.5e-18  Score=133.81  Aligned_cols=163  Identities=19%  Similarity=0.181  Sum_probs=98.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|||||||+|+|++...........+.+    .......++  ..+.+|||||....       ....  
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~--   73 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT----YRQVISCDKSVCTLQITDTTGSHQF-------PAMQ--   73 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE----EEEEEEETTEEEEEEEEECCGGGSC-------HHHH--
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc----eeEEEEECCEEEEEEEEeCCChHHh-------HHHH--
Confidence            45899999999999999999999766432221111111    111122333  36889999996542       1111  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                        ..++..+|++++|+|++.+.+... ..++..+....+.....|+++|+||+|..... .....         ...+..
T Consensus        74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~  141 (199)
T 2gf0_A           74 --RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ  141 (199)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred             --HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence              122345699999999983222222 23455555544322234999999999976531 11111         223334


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..+..++      ..|+..+.++.+|++.|...+...
T Consensus       142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          142 EWKCAFM------ETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             HHTCEEE------ECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             HhCCeEE------EEecCCCCCHHHHHHHHHHHHhhh
Confidence            4454444      457788899999999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.75  E-value=7.6e-18  Score=132.96  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|||||||+|+|++........  .+.+......... .++  ..+.||||||..           .+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~   89 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFRS   89 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHHH
Confidence            45899999999999999999999876532211  1222222222222 344  578999999932           1222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+.......  .|++||+||+|..........+         ...+..
T Consensus        90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~  158 (200)
T 2o52_A           90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ  158 (200)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence            22234567899999999983322222 23344444433333  3999999999975431111111         233444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+..
T Consensus       159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          159 ENELMFL------ETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             HTTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            4454444      35777889999999998876643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.75  E-value=2.7e-18  Score=131.18  Aligned_cols=160  Identities=18%  Similarity=0.111  Sum_probs=96.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|+|||||+|+|++........  .+.+......... .++  ..+.+|||||......           
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~-----------   69 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDA-----------   69 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTC-----------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHH-----------
Confidence            45899999999999999999999766422211  1112222222222 333  3689999999543211           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+..... .  .|+++|+||+|.........++         ...+..
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (168)
T 1z2a_A           70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAK  137 (168)
T ss_dssp             CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence            11123457799999999983222221 234444444332 2  3999999999976431011111         333444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ..|++.+.++.++++.|.+.+.
T Consensus       138 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          138 RLKLRFY------RTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             HHTCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEecCCCCCHHHHHHHHHHHHh
Confidence            4455444      4577788899999999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.75  E-value=6.2e-18  Score=132.98  Aligned_cols=173  Identities=12%  Similarity=0.050  Sum_probs=96.5

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      ..+..+..+|+++|.+|||||||+|.+++....... .....+...............+.+|||||........+.    
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----   88 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----   88 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----
Confidence            345557799999999999999999999885432211 111111111111111123467999999997653221100    


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH----HHHhcccCCch
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL----EDFLGHECPKP  168 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l----~~~l~~~~~~~  168 (277)
                      ...    ++.++|++++|+|++.++......+..++..........|++||+||+|....  ...    ......    .
T Consensus        89 ~~~----~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~----~  158 (196)
T 3llu_A           89 YEM----IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQR----A  158 (196)
T ss_dssp             HHH----HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHH----H
T ss_pred             ccc----ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHH----H
Confidence            012    23457999999999955334445555666664211222499999999997653  111    111111    0


Q ss_pred             HHHHHh----hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          169 LKEILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       169 ~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...+..    ..+..++      ++|++. .++.+++..+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          159 NDDLADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             HHHHHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence            122333    2222332      568888 9999999988664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.75  E-value=1.4e-17  Score=127.25  Aligned_cols=161  Identities=16%  Similarity=0.226  Sum_probs=96.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|+|||||+|+|++....... . .+.|........ .+++..+.+|||||........  ..+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~-~-~~~t~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGN-W-PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANS--IDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEE-EETTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccC-C-CCcceeeeEEEE-EECCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence            378999999999999999999987643221 1 122332222222 2567889999999987643221  1112222211


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      . ..++|++++|+|++ ... ....++..+.+   .+  .|+++|+||+|....  ..+    .    .....+....+.
T Consensus        78 ~-~~~~~~~i~v~D~~-~~~-~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~----~----~~~~~~~~~~~~  139 (165)
T 2wji_A           78 I-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGI----E----IDVDKLEKILGV  139 (165)
T ss_dssp             H-HHCCSEEEEEEETT-CHH-HHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTC----C----CCHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCC-chh-HhHHHHHHHHh---cC--CCEEEEEEchHhccc--cCh----h----hHHHHHHHHhCC
Confidence            1 12679999999998 321 12223333333   12  399999999996432  111    0    013334444454


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .++      +.||+.+.+++++++.+.+.+
T Consensus       140 ~~~------~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          140 KVV------PLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CEE------ECBGGGTBSHHHHHHHHHHHT
T ss_pred             CEE------EEEcCCCCCHHHHHHHHHHHh
Confidence            443      468889999999999987654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.8e-17  Score=129.18  Aligned_cols=161  Identities=15%  Similarity=0.080  Sum_probs=96.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|+|++........     |........ .+++..+.+|||||.....           ..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEI-VINNTRFLMWDIGGQESLR-----------SS   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEE-EETTEEEEEEECCC----C-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEE-EECCEEEEEEECCCCHhHH-----------HH
Confidence            345899999999999999999999766532211     111112222 2567889999999975421           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|....  ...++...         .+..
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~  144 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQ---------FLKL  144 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHH---------HHTG
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHH---------HhCh
Confidence            1223467899999999984433333 222222222110 122499999999998654  22222211         1111


Q ss_pred             --cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 --CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 --~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                        .. ..+..    ...|++.+.+++++++.|.+.+..
T Consensus       145 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          145 TSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             GGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             hhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHH
Confidence              11 11111    256888889999999999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.74  E-value=1.2e-17  Score=129.71  Aligned_cols=165  Identities=22%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +..+..+|+|+|++|+|||||+|+|++.......    ..|...........++..  +.+|||||......       .
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~   82 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------M   82 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------S
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------H
Confidence            3446689999999999999999999976542221    222222223233345544  56799999653221       1


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      ...    ++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++         ...
T Consensus        83 ~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~---------~~~  148 (183)
T 3kkq_A           83 REQ----YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQ---------GKE  148 (183)
T ss_dssp             HHH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHH---------HHH
T ss_pred             HHH----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHH---------HHH
Confidence            112    2334699999999983322211 233333433222 1224899999999976531111111         333


Q ss_pred             HHhhcCCeEEEEeCCCccccc-ChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~~~  210 (277)
                      +....+..++      ..|++ .+.+++++++.|.+.+.+
T Consensus       149 ~~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          149 MATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHhh
Confidence            4445555554      35677 778999999999887653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.74  E-value=7.9e-18  Score=133.27  Aligned_cols=166  Identities=18%  Similarity=0.082  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+..+|+++|.+|||||||++++++.......    ..|+..........++..  +.+|||||...           +.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~   92 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGLED-----------YD   92 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C----CCCSEEEEEEEEECC-CEEEEEEEEECCSGG-----------GT
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc----CCeecceeEEEEEECCEEEEEEEEECCCchh-----------hH
Confidence            45689999999999999999999965542211    122222222222344444  55999999643           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~  167 (277)
                      .....++..+|++++|+|++.+.+..+.  .++..+.... .+  .|+++|+||+|....  ....+.+...     ...
T Consensus        93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 4gzl_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SS--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence            2334467889999999999843333332  3445555543 22  499999999997755  2222211110     001


Q ss_pred             hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ....+....+...+.     +.|++.+.|++++++.|.+.
T Consensus       168 ~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          168 QGLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcEEE-----EeeCCCCCCHHHHHHHHHHH
Confidence            123344444433222     56888889999999988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.74  E-value=2.2e-18  Score=152.67  Aligned_cols=163  Identities=18%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|+|.+|||||||+|+|+|...... ....+.|........ .+.+..+.+|||||+...   ...+..++....
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~---~~~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIG---DEPFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEEC-TTCSSCCEEECCCC---------CCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEE-EECCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence            457999999999999999999998764211 122344444444433 367788999999998742   222345555555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ..++..+|++|+|+|+..+++..+..+.+++... +    .|+++|+||+|....  .   .....     +..  ..++
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-~----~pvilV~NK~D~~~~--~---~~~~e-----~~~--lg~~  159 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD-----FYS--LGFG  159 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-C----SCEEEEEECC--------------CC-----SGG--GSSS
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-C----CCEEEEEECccchhh--h---hhHHH-----HHH--cCCC
Confidence            5566778999999999878888888877777652 2    399999999996533  1   11111     100  1112


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+       ..|+..+.++.+|++.+...++
T Consensus       160 ~~~-------~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          160 EPY-------PISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             SEE-------ECCTTTCTTHHHHHHHHHTTGG
T ss_pred             ceE-------EeecccccchHHHHHHHHhhcc
Confidence            222       4577888899999998877665

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.74  E-value=2.2e-18  Score=133.06  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+|+|++|+|||||+|+|++.......  ..+.+......... .++  ..+.+|||||.....           .
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-----------~   78 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-----------S   78 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-----------H
Confidence            3489999999999999999999976643221  12222222222222 344  368999999954311           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+....+..  .|+++|+||+|..........+         ...+..
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  147 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAK  147 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence            11122346799999999983222121 33444444443333  3899999999976431111111         223334


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ..|++.+.+++++++.|...+.
T Consensus       148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          148 ELNVMFI------ETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHTCEEE------EEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HcCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence            4454444      3577788899999999877653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.74  E-value=2.4e-17  Score=128.76  Aligned_cols=163  Identities=14%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|+|||||+|++++.......     +|........ ...+..+.+|||||......           .
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~-----------~   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETL-QYKNISFEVWDLGGQTGVRP-----------Y   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEE-EETTEEEEEEEECCSSSSCC-----------C
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence            35589999999999999999999876643221     1222222222 25678899999999764321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+-+...  ...++......  ....|+++|+||+|....  ...++....     +.  ..
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~  151 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS  151 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence            2235678899999999984433332  12233333221  122499999999998654  333322221     00  01


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .... .+.    ..++|++.+.+++++++.|.+.+...
T Consensus       152 ~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          152 SIMNRTWT----IVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             GCCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             hccCCceE----EEEccCCCccCHHHHHHHHHHHHHhc
Confidence            1111 111    12567888899999999998887653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.74  E-value=2e-17  Score=130.63  Aligned_cols=166  Identities=17%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+++|++|+|||||+|++++........  .+.+.... .. ...++  ..+.+|||||....           .
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~-~~-~~~~~~~~~l~i~Dt~G~~~~-----------~   87 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYI-AD-IEVDGKQVELALWDTAGQEDY-----------D   87 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--CSSCCCCE-EE-EEETTEEEEEEEECCCCSGGG-----------T
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--CcccceEE-EE-EEECCEEEEEEEEECCCchhH-----------H
Confidence            345799999999999999999999766532211  11111111 11 22344  36889999995431           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~  167 (277)
                      .....++..+|++++|+|++.+.+...  ..++..+..... .  .|+++|+||+|....  ....+.+..    .. ..
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  162 (201)
T 2gco_A           88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSE  162 (201)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHH
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHH
Confidence            222345678899999999983222222  244455555332 2  399999999998765  222222211    00 01


Q ss_pred             hHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ....+....+. .++      ..|++.+.++.+|++.|.+.+
T Consensus       163 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          163 EGRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence            13344444454 333      467888899999999987765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.74  E-value=6.9e-18  Score=133.62  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=73.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCccee--eEEEEEeeeC----CceEEEEeCCCCCCCCCCchH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEF   88 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~   88 (277)
                      ....+|+|+|++|+|||||+|+|++.  .+. ..   ...|+.  ....... .+    ...+.+|||||..        
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~--------   84 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-KD---YAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSD--------   84 (208)
T ss_dssp             EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTH--------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCccc-CC---CCCccceEEEEEEEE-ECCcccEEEEEEEECCCcH--------
Confidence            34579999999999999999999977  331 11   122222  2222222 34    3468999999953        


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCC-cccccHHHHhcccC
Q 023779           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHEC  165 (277)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~-~~~~~l~~~l~~~~  165 (277)
                         .+......++..+|++++|+|++.+.+... ..++..+...... ....|++||+||+|... ......+       
T Consensus        85 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~-------  154 (208)
T 2yc2_C           85 ---LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD-------  154 (208)
T ss_dssp             ---HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH-------
T ss_pred             ---HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH-------
Confidence               344455667789999999999984332222 3444445444320 01249999999999765 2101111       


Q ss_pred             CchHHHHHhhcCCeEEEEeCCCcccccC-hhHHHHHHHHHHHHHh
Q 023779          166 PKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV  209 (277)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~L~~~i~~~~~  209 (277)
                        ....+....+..++      ..|++. +.++.++++.|.+.+.
T Consensus       155 --~~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          155 --MAQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             --HHHHHHHHTTCEEE------ECCC-------CHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHH
Confidence              13445555554444      457778 8899999999887664

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.74  E-value=9.2e-18  Score=132.91  Aligned_cols=164  Identities=15%  Similarity=0.071  Sum_probs=98.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|++|+|||||+|+|++.......  ..+.+......... .++  ..+.||||||.....           
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-----------   71 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQ-----------   71 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGS-----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHH-----------
Confidence            35589999999999999999999987653221  12222222222222 333  468999999954321           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .....++..+|++++|+|++.+.+... ..++..+......  ....|+++|+||+|....  ....+.        ...
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~  141 (207)
T 1vg8_A           72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA  141 (207)
T ss_dssp             CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred             HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence            112334678899999999983322222 2333444443321  012499999999997643  111111        222


Q ss_pred             HHh-hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +.. ..+..++      ..|++.+.++.++++.|.+.+..
T Consensus       142 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          142 WCYSKNNIPYF------ETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            333 2233333      46788889999999999887654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.74  E-value=2.5e-17  Score=129.45  Aligned_cols=170  Identities=21%  Similarity=0.162  Sum_probs=97.0

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHH
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVG   90 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~   90 (277)
                      +.+.....+|+|+|++|||||||+|.+++..........  .+....... ...++.  .+.+|||||....    .   
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~i~Dt~g~~~~----~---   86 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERR-IMVDKEEVTLVVYDIWEQGDA----G---   86 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEE-EEETTEEEEEEEECCCCCSGG----G---
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEE-EEECCEEEEEEEEecCCCccc----h---
Confidence            334456689999999999999999999864431111111  111111111 224444  4778999996531    0   


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (277)
Q Consensus        91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~  169 (277)
                      ..+..   .++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++         .
T Consensus        87 ~~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~  153 (195)
T 3cbq_A           87 GWLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------G  153 (195)
T ss_dssp             HHHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------H
T ss_pred             hhhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------H
Confidence            11211   22345699999999983322221 233333443321 1124999999999976431112221         2


Q ss_pred             HHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..+....+..++      ++|++.+.+++++++.|.+.+...
T Consensus       154 ~~~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          154 RHLAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHHh
Confidence            334444444443      567888899999999998877653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.74  E-value=1.5e-17  Score=129.10  Aligned_cols=161  Identities=17%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|++|||||||+|.|++......     .+|........ .+++..+.+|||||...           +...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSV-QSQGFKLNVWDIGGQRK-----------IRPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEE-EETTEEEEEEECSSCGG-----------GHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence            4568999999999999999999998753211     11211222222 35678899999999542           1222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+-+...  ...++......  ....|+++|+||+|....  ...++....     +.  +.
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~  145 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LH  145 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--ch
Confidence            3334567899999999984333222  11233332211  122499999999998654  333222111     00  00


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .... .+..    .++||+.+.++.++++.|.+.+.
T Consensus       146 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          146 TIRDRVWQI----QSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTC-
T ss_pred             hccCCceEE----EEccCCCCCCHHHHHHHHHHHHH
Confidence            1111 1111    25688889999999999877653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.74  E-value=1.4e-17  Score=130.01  Aligned_cols=165  Identities=19%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      .......+|+|+|++|||||||+|.+++..+. ..   ...|....+......++  ..+.+|||||......       
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------   84 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-------   84 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-------
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-------
Confidence            33346689999999999999999999976642 11   12222222221222343  3578999999654321       


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~  169 (277)
                       +.    .++..+|++++|+|++.+-+... ..++..+...... ....|++||+||+|.........++         .
T Consensus        85 -~~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~  150 (187)
T 3c5c_A           85 -CE----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------G  150 (187)
T ss_dssp             -TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------H
T ss_pred             -HH----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------H
Confidence             11    13456799999999983322222 2344444443210 0123999999999975431011111         2


Q ss_pred             HHHHhhcCCeEEEEeCCCcccc-cChhHHHHHHHHHHHHHh
Q 023779          170 KEILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+....+..++      .+|+ +.+.++.++++.|.+.+.
T Consensus       151 ~~~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          151 VALAGRFGCLFF------EVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEE------EEeecCccccHHHHHHHHHHHHh
Confidence            334444454444      4677 788999999999887653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.74  E-value=9.8e-18  Score=131.48  Aligned_cols=161  Identities=12%  Similarity=0.095  Sum_probs=93.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|++++......     .+|........ ...+..+.+|||||......           .
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNICFTVWDVGGQDKIRP-----------L   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----CT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence            4568999999999999999999987664321     12222222222 35678899999999754211           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+.+...  ...++.......  ...|++||+||+|....  ...+++...     +.  ..
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~  158 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQ  158 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence            1123356799999999984322222  223333332211  12499999999997654  333322221     00  00


Q ss_pred             hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ... ..+..    .++|++.+.+++++++.|.+.+.
T Consensus       159 ~~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          159 HLRSRTWYV----QATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GCSSCCEEE----EECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cccCCceEE----EECcCCCcCCHHHHHHHHHHHHh
Confidence            111 11111    25688888999999999887653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.74  E-value=2.4e-17  Score=131.54  Aligned_cols=169  Identities=11%  Similarity=0.028  Sum_probs=101.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .....+|+|+|.+|||||||+|.|++..+....    ..|...........+  ...+.+|||||...           +
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~   88 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPY-----------Y   88 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGG-----------G
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHh-----------H
Confidence            345689999999999999999999976642221    122222222111223  34688999999543           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh-c----ccCC
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-G----HECP  166 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l-~----~~~~  166 (277)
                      ......++..+|++++|+|++.+.+...  ..++..+..... +  .|++||+||+|....  ......+ .    .-..
T Consensus        89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~  163 (214)
T 3q3j_B           89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTD--LSTLMELSHQKQAPISY  163 (214)
T ss_dssp             TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGC--HHHHHHHHHTTCCCCCH
T ss_pred             HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--hhhhhhhcccccCccCH
Confidence            2233446788999999999984433333  345555655432 2  399999999997643  1100000 0    0000


Q ss_pred             chHHHHHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHHHhh
Q 023779          167 KPLKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ  210 (277)
Q Consensus       167 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~~~~  210 (277)
                      .....+....+. .++      .+|++.+.+ +.++++.+...+..
T Consensus       164 ~~~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          164 EQGCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhc
Confidence            113344455555 444      468888898 99999999887754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=4.6e-17  Score=126.88  Aligned_cols=166  Identities=16%  Similarity=0.223  Sum_probs=102.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|||||||+|+|++...+....  .+.|........ ..++..+.+|||||........  ....+....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANS--IDEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEE-EETTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEE-EeCCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence            45899999999999999999999876433222  233333333333 3567889999999987653221  111222221


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .. ...+|++++|+|.. .+.    ....++.......  .|+++|+||+|....  ..+.   .     ....+....+
T Consensus        81 ~~-~~~~~~~i~v~d~~-~~~----~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~---~-----~~~~~~~~~~  142 (188)
T 2wjg_A           81 II-NEKPDLVVNIVDAT-ALE----RNLYLTLQLMEMG--ANLLLALNKMDLAKS--LGIE---I-----DVDKLEKILG  142 (188)
T ss_dssp             HH-HHCCSEEEEEEEGG-GHH----HHHHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHT
T ss_pred             Hh-ccCCCEEEEEecch-hHH----HHHHHHHHHHhcC--CCEEEEEEhhhcccc--ccch---H-----HHHHHHHHhC
Confidence            11 12469999999987 321    1223333332222  389999999996432  1110   1     1444555555


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ..++      ..|++.+.++.++++.+...+....
T Consensus       143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          143 VKVV------PLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SCEE------ECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CCeE------EEEecCCCCHHHHHHHHHHHHHhcc
Confidence            5444      4678888999999999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.74  E-value=2.6e-18  Score=151.31  Aligned_cols=162  Identities=17%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+|+|++|||||||+|+|+|...... ....+.|....... ..+.+..+.+|||||+....   ..+...+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEE-CTTCSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEE-EEECCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999998664211 12233444444333 34677889999999986422   1134455555555


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  179 (277)
                      ++..+|++++|+|+..+++..+..+..++..     ...|+++|+||+|....  .   .....     +.    ..+. 
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~---~~~~~-----~~----~lg~-  138 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--R---ANIYD-----FY----SLGF-  138 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS-----SG----GGSS-
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--h---hhHHH-----HH----HcCC-
Confidence            5677899999999997888877766665553     12499999999997643  1   01111     11    1121 


Q ss_pred             EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                          ......||..+.++.+|++.+...++.
T Consensus       139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          139 ----GEPYPISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ----CCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             ----CCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence                123356888999999999999887763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=1.3e-17  Score=129.32  Aligned_cols=160  Identities=17%  Similarity=0.122  Sum_probs=96.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|++++........     |........ .+++..+.+|||||.....           ..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETL-SYKNLKLNVWDLGGQTSIR-----------PY   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEE-EETTEEEEEEEEC----CC-----------TT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEE-EECCEEEEEEECCCCHhHH-----------HH
Confidence            456999999999999999999999766422211     111112222 2567889999999976422           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+.+...  ...++......  ....|+++|+||+|....  ...++...         .+.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~---------~~~  145 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSK---------ELN  145 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence            2345678899999999984433333  22333333321  123499999999997654  22222211         111


Q ss_pred             hc--C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LC--D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~--~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..  . ..+.    ....|++.+.+++++++.|.+.+..
T Consensus       146 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          146 LVELKDRSWS----IVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             TTTCCSSCEE----EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             cccccCCceE----EEEccCCCCcCHHHHHHHHHHHHHh
Confidence            11  1 1111    1256888889999999999887654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.74  E-value=6e-17  Score=133.51  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+|+|++|||||||+|+|+|...+... . .+.|......... . +..+.+|||||.........  .+.+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~-~-pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN-W-PGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCS-S-SCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC-C-CCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            478999999999999999999987643222 2 2344433333222 2 67899999999886543221  122222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      . ...+|++++|+|++ ... ....+...+.+ .+    .|+++|+||+|....  ..+.   .     ....+....+.
T Consensus        77 ~-~~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~--~~~~---~-----~~~~l~~~lg~  138 (272)
T 3b1v_A           77 L-SQRADSILNVVDAT-NLE-RNLYLTTQLIE-TG----IPVTIALNMIDVLDG--QGKK---I-----NVDKLSYHLGV  138 (272)
T ss_dssp             H-TTCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TC----SCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCC-chH-hHHHHHHHHHh-cC----CCEEEEEEChhhCCc--CCcH---H-----HHHHHHHHcCC
Confidence            1 24689999999998 321 11222233333 12    399999999996533  1110   1     13344444454


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .++      +.|++.+.|+++|++.|...+..
T Consensus       139 ~vi------~~SA~~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          139 PVV------ATSALKQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             CEE------ECBTTTTBSHHHHHHHHHHSCTT
T ss_pred             CEE------EEEccCCCCHHHHHHHHHHHHhh
Confidence            444      46888899999999999887643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=8.7e-18  Score=131.67  Aligned_cols=162  Identities=15%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+|+|++|+|||||+|+|++........  ...+......... ..  ...+.||||||......           
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------   79 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRT-----------   79 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEE-ECCeEEEEEEEeCCCchhhhh-----------
Confidence            45899999999999999999999776432221  1112222222222 23  34689999999653211           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|..... .....         ...+..
T Consensus        80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~  148 (195)
T 1x3s_A           80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRNE---------GLKFAR  148 (195)
T ss_dssp             SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHHH---------HHHHHH
T ss_pred             hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHHH---------HHHHHH
Confidence            11223467799999999983322221 223333333221 1234899999999975431 11111         233444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ..|++.+.+++++++.|.+.+..
T Consensus       149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          149 KHSMLFI------EASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             HTTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HcCCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence            4454443      45777889999999999988765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.74  E-value=2.8e-17  Score=144.84  Aligned_cols=176  Identities=20%  Similarity=0.250  Sum_probs=104.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHH----HHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFV----GKE   92 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~----~~~   92 (277)
                      ...+|+|+|++|||||||+|+|+|......  +..+.|+.........+++..+.+|||||+....... +.+    ...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v--~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEE--CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccccc--CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            458999999999999999999998764212  1222222222222234678889999999984321110 000    000


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ....    +..+|++++|+|+..+.+..+..+...+.. .+.    |+++|+||||.........+++...     +...
T Consensus       257 ~~~~----i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~  322 (439)
T 1mky_A          257 VVDS----IEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREK  322 (439)
T ss_dssp             HHHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred             HHHH----HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence            1112    234599999999986777666555555544 233    8999999999875421223333222     2222


Q ss_pred             HhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCC
Q 023779          173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (277)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~  215 (277)
                      +.... ..++      ..||+.+.++.+|++.+...+.......
T Consensus       323 ~~~~~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~i  360 (439)
T 1mky_A          323 LYFIDYSPLI------FTSADKGWNIDRMIDAMNLAYASYTTKV  360 (439)
T ss_dssp             CGGGTTSCEE------ECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred             hccCCCCcEE------EEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence            22222 2332      4688899999999999999887654433

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.74  E-value=8.4e-17  Score=122.71  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|++++.......    ..|...........+  ...+.+|||||......       ....+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~   71 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence            478999999999999999999976542221    122222222112233  34588999999764321       11122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                          +..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++         ...+...
T Consensus        72 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T 1c1y_A           72 ----MKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  137 (167)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence                234699999999983322122 234444444332 1224999999999976431111111         2333344


Q ss_pred             c-CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      . +..++      ..|++.+.+++++++.|.+.+
T Consensus       138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence            3 33333      467888899999999988765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.74  E-value=2.1e-17  Score=126.47  Aligned_cols=162  Identities=22%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|+|||||+|++++........  ...+......... .++  ..+.+|||||......       .+.   
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~---   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQ---   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhh---
Confidence            689999999999999999998765422221  1222222222222 344  4578999999764211       011   


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........+.         ...+....
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  139 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGTL  139 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHHc
Confidence            112334699999999983222111 233333333322 1124999999999976431111111         23344555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ..|++.+.++.++++.+.+.+..
T Consensus       140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          140 SCKHI------ETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence            55544      46888889999999999887654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.73  E-value=8.5e-17  Score=142.29  Aligned_cols=163  Identities=14%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..+|+|+|++|+|||||+|+|++.....  .+.. +.|....... ...++..+.||||||+.++..   .+........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~-i~~~g~~l~liDT~G~~~~~~---~ve~~gi~~~  306 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEEC-FIHDKTMFRLTDTAGLREAGE---EIEHEGIRRS  306 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC--------------------CEE-EEETTEEEEEEC----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEE-EEECCeEEEEEECCCCCcchh---HHHHHHHHHH
Confidence            4789999999999999999999875321  1222 2333333232 336888999999999875321   1111112223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+.+.... ....++..+ .   ..|+++|+||+|....  .....  ..     +...   .
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~---~  370 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN--ADALI--RA-----IADG---T  370 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT--THHHH--HH-----HHHH---H
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc--cchhH--HH-----HHhc---C
Confidence            4467889999999999966655321 222334433 2   2399999999998765  22221  11     2211   0


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+      ...|++.+.++++|++.|.+.+.
T Consensus       371 ~~~~------i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          371 GTEV------IGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TSCE------EECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCce------EEEEECCCCCHHHHHHHHHHHHh
Confidence            1122      25688899999999999999887

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.73  E-value=2.4e-17  Score=128.38  Aligned_cols=162  Identities=19%  Similarity=0.137  Sum_probs=97.2

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGK   91 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~   91 (277)
                      .+..+..+|+|+|++|||||||+|.+++..+....    ..|.... ......++.  .+.+|||||....         
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~---------   80 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRF-KKEIVVDGQSYLLLIRDEGGPPEL---------   80 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEE-EEEEEETTEEEEEEEEECSSSCCH---------
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceE-EEEEEECCEEEEEEEEECCCChhh---------
Confidence            34456799999999999999999999876643221    1122211 122234554  4678999996541         


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                        . +    +..+|++++|+|++.+.+... ..++..+..... ....|++||+||+|........+..  .     ...
T Consensus        81 --~-~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~--~-----~~~  145 (184)
T 3ihw_A           81 --Q-F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDD--S-----RAR  145 (184)
T ss_dssp             --H-H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCH--H-----HHH
T ss_pred             --h-e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCH--H-----HHH
Confidence              1 2    234699999999984332223 233333433211 1234999999999974220011100  0     133


Q ss_pred             HHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+....+ ..++      .+|++.+.++.++++.+.+.+..
T Consensus       146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence            4555554 3443      46888889999999999877654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.73  E-value=2.3e-17  Score=127.40  Aligned_cols=157  Identities=19%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+..+|+++|++|||||||+|.+++..+.. . .   +|...........++  ..+.+|||||...            .
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-L-E---KTESEQYKKEMLVDGQTHLVLIREEAGAPD------------A   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-S---SCSSSEEEEEEEETTEEEEEEEEECSSSCC------------H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-c-C---CCcceeEEEEEEECCEEEEEEEEECCCCch------------h
Confidence            345899999999999999999999776532 1 1   121111122222344  3578999999653            1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcc--cccHHHHhcccCCchHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLK  170 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~~~~~~~  170 (277)
                      .    ++.++|++++|+|++.+.+... ..++.++....... ...|+++|+||+|.....  ....++         ..
T Consensus        68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~  134 (178)
T 2iwr_A           68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------AR  134 (178)
T ss_dssp             H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HH
T ss_pred             H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HH
Confidence            1    2234699999999984333333 23334555543211 224999999999974210  011111         22


Q ss_pred             HHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+....+ ..++      ..|++.+.+++++++.+.+.+.
T Consensus       135 ~~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          135 ALXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHH
Confidence            3333332 2333      4678888999999999877654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.4e-17  Score=133.75  Aligned_cols=163  Identities=18%  Similarity=0.116  Sum_probs=97.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|+|||||+|+|++..+.....  .+.+......... .++  ..+.||||||.....           
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------   76 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLE-IEGKRIKAQIWDTAGQERYR-----------   76 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTT-----------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCccchh-----------
Confidence            345899999999999999999999776532221  1222222222222 344  468999999965422           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+.+..+ ..++..+.......  .|++||+||+|.........++         ...+.
T Consensus        77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~  145 (223)
T 3cpj_B           77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFA  145 (223)
T ss_dssp             CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHH
T ss_pred             hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHH
Confidence            122345678899999999984332222 23444454433223  3899999999976431011111         23344


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+.++.++++.|...+..
T Consensus       146 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          146 QENQLLFT------ETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             HHTTCEEE------ECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            44454444      35777889999999999888765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.73  E-value=2.8e-17  Score=125.00  Aligned_cols=159  Identities=19%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|+|||||+|+|++.......    ..|............+  ..+.+|||||.....    .   ....+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~---~~~~~   71 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A---MRDQY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H---HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCcccc----CCccceEEEEEEEECCEEEEEEEEECCCchhhh----H---HHHHh
Confidence            378999999999999999999976542221    1122221121222343  347899999976421    1   11122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                          +..+|++++|+|++...+..+ ..++..+...... ...|+++|+||+|....  ......        ...+...
T Consensus        72 ----~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~  136 (166)
T 2ce2_X           72 ----MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARS  136 (166)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred             ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHH
Confidence                234599999999983322222 3344444443321 12499999999997653  211111        3334444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      ..|+..+.++.++++.|.+.+.
T Consensus       137 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          137 YGIPYI------ETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HTCCEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCeEE------EecCCCCCCHHHHHHHHHHHHH
Confidence            454444      3577778899999999987764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=4.5e-17  Score=127.66  Aligned_cols=166  Identities=18%  Similarity=0.092  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|+|||||+|+|++..+....    ..|...........++  ..+.+|||||.....           .
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~   81 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------R   81 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSC----CCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-----------T
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCcchh-----------H
Confidence            5589999999999999999999976542211    1122111111222344  468899999976532           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~~  168 (277)
                      ....++..+|++++|+|++.+.+...  ..++..+..... .  .|++||+||+|....  ....+.+..    .. ...
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  156 (194)
T 2atx_A           82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ  156 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence            22345678999999999984322222  134555555432 2  399999999998754  222111110    00 011


Q ss_pred             HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+....+. .++      .+|++.+.+++++++.|.+.+-
T Consensus       157 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          157 GQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHHh
Confidence            3334444443 333      5688888999999999877653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.73  E-value=5.9e-18  Score=130.69  Aligned_cols=164  Identities=16%  Similarity=0.054  Sum_probs=97.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +..+|+++|++|+|||||+|+|++.........  +.+......... ..+   ..+.+|||||......          
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~----------   71 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQ--TIGLDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGK----------   71 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHH--TTTSSEEEEEEE-ETTTEEEEEEEEECTTCCTTCT----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCC--ceeEEEEEEEEE-eCCCCEEEEEEEECCCCccccc----------
Confidence            458999999999999999999997664221111  111122222222 343   5789999999664321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                       ....++..+|++++|+|++.+.+..+ ..++..+..........| +++|+||+|.........++         ...+
T Consensus        72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~  141 (178)
T 2hxs_A           72 -MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HLRF  141 (178)
T ss_dssp             -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HHHH
T ss_pred             -hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HHHH
Confidence             11123467799999999983322222 234444444321101124 88999999975431011111         2334


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+..++      ..|++.+.++.++++.|...+..
T Consensus       142 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          142 CQENGFSSH------FVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHTCEEE------EECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            444454443      45778889999999999887754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.73  E-value=3.1e-17  Score=130.97  Aligned_cols=160  Identities=15%  Similarity=0.104  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--EEEEeeeC-----------CceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtpG~~~~~~   84 (277)
                      ...+|+|+|++|||||||+|+|++......    ...|....  ........           ...+.||||||.     
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-----   94 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-----   94 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence            457999999999999999999997664211    11222211  11111111           356899999992     


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                            ..+......++..+|++++|+|++...+.  .....++..+....  ...|++||+||+|.........+    
T Consensus        95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~----  162 (217)
T 2f7s_A           95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER----  162 (217)
T ss_dssp             ------HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH----
T ss_pred             ------HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH----
Confidence                  23334444456788999999999832221  22223444432211  23499999999997643101111    


Q ss_pred             ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                           ....+....+..++      ..|++.+.++.++++.|.+.+.
T Consensus       163 -----~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          163 -----QARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             -----HHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHHH
Confidence                 13344455555444      4577788899999999887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.73  E-value=5.2e-17  Score=126.17  Aligned_cols=167  Identities=16%  Similarity=0.055  Sum_probs=101.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      +..+|+++|++|+|||||++++++........    .|...........++.  .+.+|||||....           ..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGGG-----------TT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC----CcccceeEEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence            45899999999999999999999765422211    1211111111223444  4679999996532           12


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~~  168 (277)
                      ....++..+|++++|+|++.+.+..+.  .++..+.....   ..|+++|+||+|....  ....+.+..    .. ...
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  143 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  143 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence            223456789999999999843222222  34555555433   2499999999997654  222221110    00 011


Q ss_pred             HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+....+. .++      ..|++.+.++.++++.+.+.+..
T Consensus       144 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          144 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhc
Confidence            2334444453 333      56788889999999999888754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.72  E-value=1e-16  Score=142.48  Aligned_cols=163  Identities=18%  Similarity=0.230  Sum_probs=109.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +..+|+++|+.++|||||+|+|++.....     ......+.|....+.... +++..+.+|||||+.           .
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh~-----------~   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHA-----------D   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHH-----------H
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCChH-----------H
Confidence            45899999999999999999999876110     011122345444444333 577899999999942           3


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      +.......+..+|++++|+|++.+....+...+..+.. .+.    |+++++||+|....  ..++.....     +.++
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~  153 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSI  153 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence            44444455678899999999986777777777766655 343    77999999998754  445444444     5666


Q ss_pred             Hhhc-C---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLC-D---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~-~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +... +   ..++      +.|+..+.++.+|++.|...++.
T Consensus       154 l~~~~~~~~~~ii------~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          154 LQSTHNLKNSSII------PISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             HHHSSSGGGCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HhhhcccccceEE------EEECcCCCCHHHHHHHHHHhhcC
Confidence            6554 2   2232      45788889999999999997753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.72  E-value=1.7e-17  Score=140.79  Aligned_cols=161  Identities=12%  Similarity=0.049  Sum_probs=96.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +..+|+|+|++|+|||||+|.|++..+...     .+|........ ...+..+.||||||....           ....
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDKI-----------RPLW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC----------------CCSH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEE-ecCcEEEEEEECCCCHhH-----------HHHH
Confidence            456999999999999999999997764222     12333433333 357788999999994432           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ..++..+|++++|+|++..-+...  ..+...+......  ..|++||+||+|....  .....+...     +..  ..
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~--~~  295 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITDK-----LGL--HS  295 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHHH-----HTC--TT
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHHH-----hch--hh
Confidence            234567899999999984333332  2222333322111  2499999999998755  333322221     100  00


Q ss_pred             cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .. ..+..    ...|++.+.++++|++.|.+.+..
T Consensus       296 ~~~~~~~~----~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          296 LRHRNWYI----QATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CCSSCEEE----EECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             hhcCCCEE----EEEECCCCcCHHHHHHHHHHHHHh
Confidence            00 11111    246888889999999999887754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.72  E-value=4.7e-17  Score=127.60  Aligned_cols=166  Identities=10%  Similarity=0.027  Sum_probs=99.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEEe--eeC--CceEEEEeCCCCCCCCCCc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV--LKD--GQVVNVIDTPGLFDLSAGS   86 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~--~~~--~~~~~liDtpG~~~~~~~~   86 (277)
                      ....+|+|+|++|||||||++.|.+.........      ....|.........  ..+  ...+.+|||||....    
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----   87 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY----   87 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence            3458999999999999999999887543221110      01122222221111  112  245899999996642    


Q ss_pred             hHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH----HHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET----AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                             ......++..+|++++|+|++.+....+..    ...|+..........|+++|+||+|....  ...++   
T Consensus        88 -------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---  155 (198)
T 3t1o_A           88 -------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---  155 (198)
T ss_dssp             -------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH---
T ss_pred             -------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH---
Confidence                   122233567889999999998332222322    23344443111123499999999997654  22222   


Q ss_pred             ccCCchHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          163 HECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                            ...+....+. .++      ..|++.+.++.++++.|.+.+..
T Consensus       156 ------~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          156 ------VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             ------HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHHH
Confidence                  3334444444 333      56888899999999999877654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.72  E-value=7.1e-17  Score=127.92  Aligned_cols=167  Identities=15%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|++|||||||+|.|++..+....    ..|...........++  ..+.||||||....           .
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~   90 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D   90 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------T
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------h
Confidence            45689999999999999999999986642211    1222221111112233  46899999995431           1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---cCC-ch
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP  168 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~~~-~~  168 (277)
                      .....++..+|++++|+|++.+.+...  ..++..+..... .  .|++||+||+|..... ..+.++...   ... ..
T Consensus        91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  166 (205)
T 1gwn_A           91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ  166 (205)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred             HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence            222345688999999999984322222  234445555432 2  3999999999976431 111111110   000 11


Q ss_pred             HHHHHhhcC-CeEEEEeCCCccccc-ChhHHHHHHHHHHHHH
Q 023779          169 LKEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI  208 (277)
Q Consensus       169 ~~~~~~~~~-~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~  208 (277)
                      ...+....+ ..++      ++|++ .+.++.++++.|.+.+
T Consensus       167 ~~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          167 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHH
Confidence            334444444 2333      46777 5789999999987765

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.72  E-value=4.2e-17  Score=150.79  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEE-----EEe---------------------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMK-----TTV---------------------------   64 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~-----~~~---------------------------   64 (277)
                      ...+|+|+|.+|+|||||+|+|+|....+.+..+.+... ...+.     ...                           
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999999887555432222100 00000     000                           


Q ss_pred             ------------------eeCC----ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH
Q 023779           65 ------------------LKDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE  122 (277)
Q Consensus        65 ------------------~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~  122 (277)
                                        .+..    ..+.||||||+.+...        .......+++.+|++|+|+|++..++..+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~  219 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER  219 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence                              0000    3689999999764211        122222334567999999999877777776


Q ss_pred             HHHH-HHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          123 TAVH-RLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       123 ~~~~-~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+. .+.. .+    .|+++|+||+|....
T Consensus       220 ~~l~~~l~~-~~----~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          220 RYLENYIKG-RG----LTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHTTT-SC----CCEEEEEECGGGGGG
T ss_pred             HHHHHHHHh-hC----CCEEEEEECcccccc
Confidence            5543 2222 12    389999999997644

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.72  E-value=2.1e-17  Score=145.65  Aligned_cols=163  Identities=17%  Similarity=0.186  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|+|++|+|||||+|+|++........ ..+.|....... ...++..+.+|||||+.++..   .+........
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~-i~~~g~~v~liDT~G~~~~~~---~ve~~gi~~~  297 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQ-LVVGGIPVQVLDTAGIRETSD---QVEKIGVERS  297 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHE-EEETTEEEEECC----------------------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEE-EEECCEEEEEEECCccccchh---HHHHHHHHHH
Confidence            34789999999999999999999865321111 123333332222 236788999999999865321   1111111223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ...+..+|++++|+|++.+++..+..++..+..       .|+++|+||+|....  .... .+..     +.     ..
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~  357 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NI  357 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TC
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cC
Confidence            345688999999999997777776555554432       389999999998755  2211 1111     10     11


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..+      ...|++.+.|+++|++.|.+.+...
T Consensus       358 ~~~------i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          358 TQI------VHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             CCE------EEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             CcE------EEEECCCCCCHHHHHHHHHHHHhcc
Confidence            122      2568888999999999999988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.72  E-value=1.1e-16  Score=124.40  Aligned_cols=167  Identities=15%  Similarity=0.110  Sum_probs=97.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+++|++|+|||||+|.|++.......    .+|...........++  ..+.+|||||....           .
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~   69 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D   69 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence            34589999999999999999999976542211    1122211111112233  46889999995431           1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---cCC-ch
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP  168 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~~~-~~  168 (277)
                      .....++..+|++++|+|++.+.+...  ..++..+..... .  .|+++|+||+|..... ..+.+....   ... ..
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  145 (184)
T 1m7b_A           70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ  145 (184)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred             hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence            222345688999999999984322222  234444554432 2  3999999999976431 111111100   000 11


Q ss_pred             HHHHHhhcC-CeEEEEeCCCccccc-ChhHHHHHHHHHHHHH
Q 023779          169 LKEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI  208 (277)
Q Consensus       169 ~~~~~~~~~-~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~  208 (277)
                      ...+....+ ..++      ++|++ .+.++.++++.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          146 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             HHHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHH
Confidence            334444444 2343      46777 5789999999987765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.72  E-value=1.1e-16  Score=124.72  Aligned_cols=170  Identities=16%  Similarity=0.090  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+++|++|||||||+|++++.... .+. ..+.|.......   ..  .+.+|||||+......+......+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~-~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGK-RPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-SSS-STTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-cCC-CCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            57999999999999999999987642 221 123333332221   22  788999999876554433323333333222


Q ss_pred             c----CCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779          100 A----KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (277)
Q Consensus       100 ~----~~~~~~~l~v~d~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~  166 (277)
                      +    ...++++++|+|.. .+......+.         ..+.......  .|+++|+||+|....  .  ...      
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~------  141 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEV------  141 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHH------
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHH------
Confidence            2    33456777787765 2211101111         1112211122  389999999997755  2  111      


Q ss_pred             chHHHHHhhcCCeEEE-EeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                        ...+....+..+.. .....++|++.+.++.++++.|.+.+...
T Consensus       142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence              22333333332100 00012568888899999999998887653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=3.6e-17  Score=129.76  Aligned_cols=167  Identities=19%  Similarity=0.143  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|++|||||||+|+|++.......    .+|...........++  ..+.+|||||.....           .
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   88 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------R   88 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCT-----------T
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEECCEEEEEEEEECCCcHHHH-----------H
Confidence            4479999999999999999999977653221    1122111111122344  368899999976432           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cCC-ch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~~-~~  168 (277)
                      ....++..+|++++|+|++.+.+...  ..++..+..... .  .|+++|+||+|....  ....+.+..    ... ..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  163 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD  163 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence            22335678899999999983222222  344555555332 2  399999999998654  222222211    000 11


Q ss_pred             HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+....+. .++      ..|++.+.++++|++.|.+.+..
T Consensus       164 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          164 GRAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence            2333334443 333      46888889999999999887654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.72  E-value=1.8e-17  Score=129.77  Aligned_cols=156  Identities=10%  Similarity=0.013  Sum_probs=93.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|++++......     .+|....... ..+++..+.+|||||....           ...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEE-LAIGNIKFTTFDLGGHIQA-----------RRL   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEE-EEETTEEEEEEECCCSGGG-----------TTS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEE-EEECCEEEEEEECCCCHHH-----------HHH
Confidence            3457999999999999999999997664221     1222222222 2357788999999996532           112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|++.+-+...  ...++......  ....|+++|+||+|....  ...++..         +.+.
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~  150 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELR---------SALG  150 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHH---------HHhC
Confidence            2345678899999999984333222  11223222211  122499999999997653  2222221         1111


Q ss_pred             hc---------C-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          175 LC---------D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       175 ~~---------~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ..         . ....    ..++|++.+.++.++++.|.+
T Consensus       151 ~~~~~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          151 LLNTTGSQRIEGQRPVE----VFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CSSCCC---CCSSCCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred             CccccccccccccceEE----EEEeECCcCCCHHHHHHHHHh
Confidence            10         0 1111    125688889999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=6e-16  Score=132.78  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch-HHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVK   95 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~   95 (277)
                      ....+|+++|++|||||||+|.|++.... .+. ....|........ ...+..+.+|||||+.+...... .+..   .
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~-~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IAS-YPFTTRGINVGQF-EDGYFRYQIIDTPGLLDRPISERNEIEK---Q  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EEC-CTTCSSCEEEEEE-EETTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCCeeeceeEEEE-EecCceEEEEeCCCccccchhhhhHHHH---H
Confidence            34589999999999999999999987642 221 1223333333322 24677899999999976432211 1111   2


Q ss_pred             HHhhcCCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           96 CLGMAKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .+......+|++++|+|++..  ++..+ ..++..+...++ +  .|+++|+||+|....  ..++.         ...+
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~--~piilV~NK~Dl~~~--~~~~~---------~~~~  304 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-D--LPFLVVINKIDVADE--ENIKR---------LEKF  304 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-T--SCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-C--CCEEEEEECcccCCh--HHHHH---------HHHH
Confidence            222334567999999998733  24443 456666666553 2  399999999997655  33322         2223


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +...+..++      ..|++.+.|+++|++.|...+..
T Consensus       305 ~~~~~~~~~------~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          305 VKEKGLNPI------KISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHTTCCCE------ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence            333333333      46888889999999999888754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.71  E-value=1.8e-17  Score=140.62  Aligned_cols=169  Identities=18%  Similarity=0.121  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .|+|+|.+|||||||+|+|++..+....  ....|.......+. +. +..+.||||||+.........+...+...+. 
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~-~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~-  235 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVE-TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-  235 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEE-CSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEE-eCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence            6899999999999999999976542211  11222222222222 34 3789999999975322222223444544443 


Q ss_pred             cCCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779          100 AKDGIHAFLVVFSVTN---RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                         .+|++++|+|++.   +-...+ ..++..+......-...|++||+||+|....  .   +.        +..+...
T Consensus       236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~---e~--------~~~l~~~  299 (342)
T 1lnz_A          236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A---EN--------LEAFKEK  299 (342)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H---HH--------HHHHHHH
T ss_pred             ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H---HH--------HHHHHHH
Confidence               3599999999983   222222 2344445443211123599999999997644  1   11        2223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~  213 (277)
                      +...    ......|+..+.++++|++.|...+.....
T Consensus       300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            3322    123467888899999999999999976544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.71  E-value=3e-16  Score=131.40  Aligned_cols=175  Identities=13%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCCc----------------------ceee------------
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGV----------------------TKTC------------   58 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~---~~~~----------------------t~~~------------   58 (277)
                      .....+|+|+|.+|||||||+|+|+|....+.+..   ..+.                      |+..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            34558999999999999999999999876432211   1110                      1000            


Q ss_pred             ------------EEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEE-EEEeCCCCCCHHHH-
Q 023779           59 ------------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE-  122 (277)
Q Consensus        59 ------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~-  122 (277)
                                  ............+.||||||+.....  ..+.+...+...+..++..++.++ +|+|++.+++..+. 
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                        00001111236799999999986432  112222233334444445556554 79999865655553 


Q ss_pred             HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHH
Q 023779          123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (277)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~  202 (277)
                      .++..+..   .+  .|+++|+||+|..... ....+.+...    +    ..+...++   .....|++.+.++.+|++
T Consensus       183 ~~~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~----~----~~~~~~~~---~v~~~SA~~~~gi~~l~~  245 (299)
T 2aka_B          183 KIAKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLENK----L----LPLRRGYI---GVVNRSQKDIDGKKDITA  245 (299)
T ss_dssp             HHHHHHCT---TC--SSEEEEEECGGGSCTT-CCCHHHHTTC----S----SCCTTCEE---ECCCCCCBCTTSCBCHHH
T ss_pred             HHHHHhCC---CC--CeEEEEEEccccCCCC-chHHHHHhCC----c----CcCCCCcE---EEECCChhhccccccHHH
Confidence            23333332   12  3999999999987541 1122222210    0    01111222   234568888899999988


Q ss_pred             HHHHH
Q 023779          203 LVNSV  207 (277)
Q Consensus       203 ~i~~~  207 (277)
                      .|...
T Consensus       246 ~l~~~  250 (299)
T 2aka_B          246 ALAAE  250 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.71  E-value=5.4e-17  Score=127.84  Aligned_cols=157  Identities=11%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||+|++++....... ...+.+    ... ..+++..+.+|||||.....           ..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~----~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT----SEE-LTIAGMTFTTFDLGGHIQAR-----------RV   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEE-EEETTEEEEEEEECC----C-----------CG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCce----eEE-EEECCEEEEEEECCCcHhhH-----------HH
Confidence            34589999999999999999999987642211 111111    122 23567889999999955321           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.+-+...  ...++......  ....|+++|+||+|....  ...++.         .+.+.
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~  152 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERL---------REMFG  152 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHH---------HHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHH---------HHHhC
Confidence            2345678899999999984322222  12233332211  122499999999997643  222221         11211


Q ss_pred             hcC---------------CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCD---------------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~---------------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ...               ....    ..++||+.+.+++++++.|.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          153 LYGQTTGKGSVSLKELNARPLE----VFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CTTTCCCSSCCCTTTCCSCCEE----EEECBTTTTBSHHHHHHHHHTT
T ss_pred             cccccccccccccccccCceEE----EEEEECCCCCCHHHHHHHHHHh
Confidence            100               1111    1256888999999999988653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=2.2e-16  Score=123.99  Aligned_cols=162  Identities=18%  Similarity=0.140  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|++|+|||||+|+|++........    .|...........++  ..+.+|||||...     .   ....
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~   93 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQRE   93 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchh
Confidence            456899999999999999999999766422211    122122222122343  4588999999765     1   1122


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .+    +..+|++++|+|++.+.+..+ ..++..+..... ....|++||+||+|.........++         ...+.
T Consensus        94 ~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~  159 (196)
T 2atv_A           94 GH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLA  159 (196)
T ss_dssp             HH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence            22    234599999999983222222 234444544332 1224999999999976431111111         22333


Q ss_pred             hhcCCeEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ..|++.+. ++.++++.|.+.+..
T Consensus       160 ~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          160 TELACAFY------ECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             HHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCeEE------EECCCcCCcCHHHHHHHHHHHHHh
Confidence            34444444      45777788 999999998877643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.70  E-value=2.3e-17  Score=127.84  Aligned_cols=166  Identities=18%  Similarity=0.107  Sum_probs=93.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+++|++|+|||||+|++++.......    .+|...........++  ..+.+|||||.....           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   70 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------   70 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence            34589999999999999999999976532111    1121111111111222  346699999965421           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH-h--cccCCchH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPL  169 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~-l--~~~~~~~~  169 (277)
                      .....++..+|++++|+|++.+.+....  .++..+.....   ..|+++|+||+|....  ...... .  ..-.....
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~  145 (182)
T 3bwd_D           71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG  145 (182)
T ss_dssp             TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred             hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence            2223456788999999999833222222  34555555432   2499999999997654  211000 0  00000113


Q ss_pred             HHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+....+. .++      +.|++.+.++.++++.|.+.+
T Consensus       146 ~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          146 EELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            334444453 343      568888899999999998765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.70  E-value=1e-16  Score=127.49  Aligned_cols=168  Identities=19%  Similarity=0.132  Sum_probs=100.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ....+|+|+|++|+|||||++.+++..+....    .+|...........++  ..+.+|||||......          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceeEEEEEEECCEEEEEEEEECCCcHHHHH----------
Confidence            34589999999999999999999976542211    1122111111122343  4689999999865321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-CCchHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CPKPLKE  171 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-~~~~~~~  171 (277)
                       ....++..+|++++|+|++.+.+...  ..++..+..... .  .|++||+||+|....  ..+....... .......
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~  146 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE  146 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence             12335678899999999983322222  134455554432 2  499999999997644  2110000000 0011333


Q ss_pred             HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +....+. .++      +.|++.+.++.++++.|.+.+..
T Consensus       147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence            4444453 443      46788889999999999888765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.70  E-value=5e-18  Score=136.04  Aligned_cols=164  Identities=16%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      .....+|+|+|.+|||||||+|+++............+.+........ ...+..+.+|||||......           
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------   79 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGG-----------   79 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSC-----------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhH-----------
Confidence            345689999999999999999995533321111112222222222211 12335689999999543221           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++..+|++++|+|++.+.+... ..++..+...+. +  .|+++|+||+|....  .... .        ...+..
T Consensus        80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~--------~~~~~~  145 (221)
T 3gj0_A           80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-K--------SIVFHR  145 (221)
T ss_dssp             CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-G--------GCCHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-H--------HHHHHH
Confidence            11123457799999999984322222 234444554432 2  399999999997654  2111 1        112333


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ..+..++      .+|++.+.++.++++.|.+.+...
T Consensus       146 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          146 KKNLQYY------DISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             HHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            3444444      468888899999999998887653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.70  E-value=5e-16  Score=130.52  Aligned_cols=126  Identities=17%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH-HHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKC   96 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~   96 (277)
                      ...+|+|+|++|||||||+|.+++....... ...+.|...........++..+.+|||||...       ....+ ...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~   73 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQ   73 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhH
Confidence            3489999999999999999999876321111 12344555444443323567899999999432       11111 122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      ...++.++|++++|+|++.+.+..+. .+..++..........|+++|+||+|...
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            23345788999999999954443433 33444444321111249999999999875

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.69  E-value=5.3e-16  Score=137.32  Aligned_cols=160  Identities=21%  Similarity=0.283  Sum_probs=100.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC-CCCCCchHHH-HHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVG-KEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~-~~~~~~   96 (277)
                      ..+|+|+|.+|+|||||+|+|++........ ..++|....... ...++..+.+|||||+. .+....+... ......
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~-i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEE-IVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEE-EEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEE-EecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            3789999999999999999999875321111 122333332232 33678899999999987 5432211111 111222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                          +..+|++|+|+|++.+.+..+..+++.+    . +  .|+++|+||+|....  ...++         +..+.. .
T Consensus       321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~  377 (482)
T 1xzp_A          321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-T  377 (482)
T ss_dssp             ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-C
T ss_pred             ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-C
Confidence                3456999999999866666665554433    2 2  389999999997543  22221         222221 1


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      ..|++.+.++++|++.|.+.+.
T Consensus       378 ~~~~i------~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          378 DRHMV------KISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             STTEE------EEEGGGTCCHHHHHHHHHHHTH
T ss_pred             CCcEE------EEECCCCCCHHHHHHHHHHHHh
Confidence            12222      4688889999999999988644

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.69  E-value=1.7e-16  Score=136.39  Aligned_cols=130  Identities=17%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--ccee----------------------------------------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKT----------------------------------------   57 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~--~t~~----------------------------------------   57 (277)
                      .+|+|+|++|||||||+|+|+|..+++.+....+  ++.-                                        
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999876555432111  0000                                        


Q ss_pred             ----------eEEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH
Q 023779           58 ----------CEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV  125 (277)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~  125 (277)
                                .....+.......+.||||||+.....  ....+...+......++.++|++++|++.. ........++
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~  193 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI  193 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence                      000011112244689999999987532  123344555666666678899999999876 2222223444


Q ss_pred             HHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          126 HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      .++..+...+  .|+++|+||+|....
T Consensus       194 ~l~~~~~~~~--~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          194 KISREVDPSG--DRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred             HHHHHhcccC--CCEEEEEeCCccCCC
Confidence            5555543222  389999999998754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.69  E-value=7e-19  Score=138.77  Aligned_cols=163  Identities=19%  Similarity=0.174  Sum_probs=91.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      +...+|+|+|++|||||||+|+|++........  .+.+......... .++  ..+.||||||......          
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   97 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT----------   97 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHH----------
Confidence            345899999999999999999999766422211  1122222222222 444  4689999999654321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                       ....++..+|++++|+|++.+.+... ..++..+.......  .|++||+||+|....  ..+..  .     ....+.
T Consensus        98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~~--~-----~~~~~~  165 (199)
T 3l0i_B           98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDY--T-----TAKEFA  165 (199)
T ss_dssp             -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCCS--C-----C-CHHH
T ss_pred             -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCCH--H-----HHHHHH
Confidence             12234578899999999984332222 23333333322222  499999999997644  11100  0     123333


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..      ....|++.+.++.++++.|.+.+..
T Consensus       166 ~~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          166 DSLGIP------FLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HTTTCC------BCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             HHcCCe------EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            444433      2356888999999999998776543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=1.7e-15  Score=132.30  Aligned_cols=166  Identities=15%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeee--------------C--------CceEEE
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNV   73 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l   73 (277)
                      ...++|+++|+.++|||||+++|+|...... .....+.|....+......              .        ...+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            3458999999999999999999997542111 1112233444333221110              1        157999


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |||||.           ..+...+......+|++++|+|++.+. .......+..+.. .+.   .|+++++||+|....
T Consensus        86 iDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred             EECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence            999993           234444455567889999999998655 5555666655543 333   379999999998755


Q ss_pred             ccccHHHHhcccCCchHHHHHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          153 HEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       153 ~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                        .......+.     +.+++...   ...++      +.|+..+.++++|++.|...++.
T Consensus       151 --~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          151 --KQAEENYEQ-----IKEFVKGTIAENAPII------PISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             --TTTTTHHHH-----HHHHHTTSTTTTCCEE------EC------CHHHHHHHHHHHSCC
T ss_pred             --HHHHHHHHH-----HHHHHhhcCCCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence              221111222     34444432   12222      46888889999999999987654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.69  E-value=2.7e-17  Score=143.18  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=104.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      |....++|+|+|++|+|||||+|+|++....... ...+.|......... +.+ ..+.+|||||+.+............
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~-~~~~~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSME-LHPIGPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEE-ETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEE-ECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence            4456689999999999999999999987753222 223344444444444 344 3899999999987653322212222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      ..    ++..+|++++|+|+  .....+..++.++.+. +    .|+++|+||+|....  ... +.        ...+.
T Consensus       108 ~~----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~--~~~-~~--------~~~l~  165 (423)
T 3qq5_A          108 RR----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGE--KAE-EL--------KGLYE  165 (423)
T ss_dssp             HH----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTC--CCT-HH--------HHHSS
T ss_pred             HH----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCc--cHH-HH--------HHHHH
Confidence            22    34577999999998  5556677777777765 2    389999999998765  221 11        11121


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+.      .....|++.+.++++|++.|.+.++.
T Consensus       166 ~~~g~------~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          166 SRYEA------KVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             CCTTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             HHcCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            22232      33467888999999999999999854

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.69  E-value=1.3e-15  Score=140.36  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--c------------------------------------------
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--V------------------------------------------   54 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~--~------------------------------------------   54 (277)
                      -++|+|+|.+++|||||+|+|+|..+++.+....+  +                                          
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            36899999999999999999999887665532111  0                                          


Q ss_pred             -----ceeeEEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhc-CCCccEEEEEEeCCCCCCHHHH-HHH
Q 023779           55 -----TKTCEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEE-TAV  125 (277)
Q Consensus        55 -----t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~-~~~  125 (277)
                           +.......+.......++||||||+.....  ....+...+...+..+ ...+|++|+|+|++..+...+. .++
T Consensus       131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll  210 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  210 (772)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred             CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence                 000001111122344689999999987432  1222222333333322 2578999999999866666664 455


Q ss_pred             HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      ..+... +    .|+++|+||+|..... .....++...       +. .....+   ......|+..+.+++.|++.|.
T Consensus       211 ~~L~~~-g----~pvIlVlNKiDlv~~~-~~~~~il~~~-------~~-~l~lg~---~~VV~iSA~~G~GvdeL~eaI~  273 (772)
T 3zvr_A          211 KEVDPQ-G----QRTIGVITKLDLMDEG-TDARDVLENK-------LL-PLRRGY---IGVVNRSQKDIDGKKDITAALA  273 (772)
T ss_dssp             HHHCTT-C----SSEEEEEECTTSSCTT-CCSHHHHTTC-------SS-CCSSCE---EECCCCCCEESSSSEEHHHHHH
T ss_pred             HHHHhc-C----CCEEEEEeCcccCCcc-hhhHHHHHHH-------hh-hhhccC---CceEEecccccccchhHHHHHH
Confidence            544432 2    3899999999988651 1111221110       00 001122   2344568888899999999988


Q ss_pred             H
Q 023779          206 S  206 (277)
Q Consensus       206 ~  206 (277)
                      .
T Consensus       274 ~  274 (772)
T 3zvr_A          274 A  274 (772)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.68  E-value=1.7e-16  Score=138.29  Aligned_cols=168  Identities=15%  Similarity=0.116  Sum_probs=102.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cC------------CCCCcceeeEEE----EEeeeCCceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SA------------GSSGVTKTCEMK----TTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~------------~~~~~t~~~~~~----~~~~~~~~~~~liDtpG~~   80 (277)
                      +..+|+++|++|+|||||+|+|++...... +.            .....+......    .........+.+|||||..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            448999999999999999999998542110 00            000000000000    0000112678999999954


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~  159 (277)
                      +           +.......+..+|++++|+|+..+. .......+..+... +.   +|+++|+||+|....  .....
T Consensus        87 ~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~~~  149 (403)
T 3sjy_A           87 V-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEALS  149 (403)
T ss_dssp             G-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHHHH
T ss_pred             H-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHHHH
Confidence            3           2222233345779999999999655 45556666655553 33   289999999998765  44444


Q ss_pred             HhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....     +.+++..++....   .....|+..+.++++|++.|...++.
T Consensus       150 ~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          150 QYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCC
Confidence            4443     5555544331100   11246888889999999999987654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=2e-15  Score=129.38  Aligned_cols=173  Identities=13%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc-----------------------eee--------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVT-----------------------KTC--------------   58 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t-----------------------~~~--------------   58 (277)
                      ...+|+|+|.+|||||||+|+|+|..+.+.+..  ...++                       +..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            347899999999999999999999876433311  11111                       000              


Q ss_pred             ----------EEEEEeeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHH
Q 023779           59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAV  125 (277)
Q Consensus        59 ----------~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~  125 (277)
                                ............+.||||||+......  ...+...+...+..++ ...+++++|++++..+...+.  +
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~  187 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L  187 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence                      000111112467999999999764321  2222233333333333 344667777887655554443  2


Q ss_pred             HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      .++......+  .|+++|+||+|..... ....+++... .       ......++.   ....|++.+.++.+|++.+.
T Consensus       188 ~i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~-~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~  253 (353)
T 2x2e_A          188 KVAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLENK-L-------LPLRRGYIG---VVNRSQKDIDGKKDITAALA  253 (353)
T ss_dssp             HHHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTTC-S-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhCC-c-------ccccCCceE---EEeCCcccccccccHHHHHH
Confidence            3344432222  3899999999987541 1122333220 0       001112322   33457888888888888886


Q ss_pred             H
Q 023779          206 S  206 (277)
Q Consensus       206 ~  206 (277)
                      .
T Consensus       254 ~  254 (353)
T 2x2e_A          254 A  254 (353)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=1.2e-15  Score=133.26  Aligned_cols=165  Identities=13%  Similarity=0.194  Sum_probs=105.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeee--------------C--------CceEEEE
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI   74 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li   74 (277)
                      ..++|+++|+.++|||||+++|+|...... .....+.|....+......              .        ...+.||
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            448999999999999999999997542111 1111234444433322111              0        1579999


Q ss_pred             eCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                      ||||..           .+...+......+|++++|+|++.+. .......+..+..+ +.   .|+++++||+|.... 
T Consensus        89 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~-  152 (410)
T 1kk1_A           89 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK-  152 (410)
T ss_dssp             ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-
T ss_pred             ECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH-
Confidence            999932           33344444456779999999998655 55666666655543 43   279999999998765 


Q ss_pred             cccHHHHhcccCCchHHHHHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                       .......+.     +.+++...   ...++      ..|+..+.+++.|++.|...++.
T Consensus       153 -~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          153 -EKALENYRQ-----IKEFIEGTVAENAPII------PISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             -HHHHHHHHH-----HHHHHTTSTTTTCCEE------ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHH-----HHHHHHhcCcCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence             333233333     44454432   12222      45788889999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.68  E-value=2.5e-16  Score=122.47  Aligned_cols=170  Identities=16%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe----eeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ..+|+|+|++|||||||+|.|++......+....+...........    ......+.+|||||..           ++.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~   70 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EFY   70 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH-----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HHH
Confidence            3789999999999999999999853111111111111121111111    0134578999999932           122


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .....++.+.+++++|+|++.+.+..+  ..++..+.... .+  .|+++|+||+|....  ..+......    ....+
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~  141 (184)
T 2zej_A           71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SS--SPVILVGTHLDVSDE--KQRKACMSK----ITKEL  141 (184)
T ss_dssp             TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TT--CEEEEEEECGGGCCH--HHHHHHHHH----HHHHT
T ss_pred             HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CC--CcEEEEEECCCcccc--hhhHHHHHH----HHHHH
Confidence            111223345699999999984321111  23333333322 12  389999999997644  222211111    01122


Q ss_pred             HhhcCCeEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~  210 (277)
                      ....+....  ......||+.+. ++..|++.|.+.+..
T Consensus       142 ~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          142 LNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence            222232200  011245777774 999999999887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.68  E-value=4.6e-16  Score=136.80  Aligned_cols=168  Identities=15%  Similarity=0.115  Sum_probs=100.8

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEEEEEe
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTV   64 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~   64 (277)
                      .+....++|+++|++|+|||||+|+|++....-..                             ....+.|.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            34456689999999999999999999653210000                             0012455555555443


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCcCcc
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVF  137 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-------~~~~~~~~~l~~~~~~~~~  137 (277)
                       ..+..+.||||||+.+           +......++..+|++++|+|+..+..       ......+..+.. .+.   
T Consensus        92 -~~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---  155 (439)
T 3j2k_7           92 -TEKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---  155 (439)
T ss_pred             -cCCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence             5678999999999543           33344444567899999999985432       344455554444 233   


Q ss_pred             CcEEEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHH
Q 023779          138 DYMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (277)
Q Consensus       138 ~~~ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~  202 (277)
                      .++++++||+|....  ....++.....     +..++...+......-...+.||..+.|+.++.+
T Consensus       156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            149999999997532  01223333333     5555555553100000122567888888887543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=4.2e-15  Score=118.08  Aligned_cols=164  Identities=20%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...+|+|+|.+|||||||+|.+++... +.......+.+  ..... ...++.  .+.+|||+|...          ...
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~-i~~~~~~~~l~~~Dt~g~~~----------~~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERT-LMVDGESATIILLDMWENKG----------ENE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEE-EEETTEEEEEEEECCTTTTH----------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEE-EEECCeeeEEEEeecCCCcc----------hhh
Confidence            458999999999999999999997432 22211111212  11111 224554  467899998432          111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .....++..+|++++|+|++.+-+... ..++..+..... ....|++||+||+|.........++         ...+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a  172 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA  172 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence            222445788999999999983322222 123333333211 1124999999999975431111111         11222


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ...+..++      ++||+.+.+++++++.|.+.+..
T Consensus       173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            23343333      46888999999999999876643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.67  E-value=2.9e-15  Score=118.81  Aligned_cols=175  Identities=14%  Similarity=0.210  Sum_probs=97.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch---HHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGK   91 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~   91 (277)
                      +.....+|+|+|++|||||||+|+|+|...........+.+.......   +.+ .+.+|||||+.....+..   ....
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VAD-GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EET-TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecC-CEEEEECcCCcccccCHHHHHHHHH
Confidence            345668999999999999999999998762111111122222222221   222 678999999865322111   1111


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .+... ......++++++++|+..+.+..+.....++.. .+    .|+++|.||+|....  ......+..     +..
T Consensus        98 ~~~~~-~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~  164 (210)
T 1pui_A           98 ALGEY-LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VRE  164 (210)
T ss_dssp             HHHHH-HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHH
T ss_pred             HHHHH-HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHH
Confidence            11122 222356799999999986666555555555543 23    288999999997754  222211222     344


Q ss_pred             HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ++...+.....    .+.|+..+.++.++++.|.+.+..
T Consensus       165 ~~~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          165 AVLAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHGGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence            44443322221    245777888999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.67  E-value=1.3e-16  Score=142.77  Aligned_cols=118  Identities=14%  Similarity=0.161  Sum_probs=80.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc--ccC------------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtp   77 (277)
                      +.++|+|+|++|+|||||+|+|++.....  .+.                  ...+.|.......+ .+.+..+.|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEECC
Confidence            45899999999999999999996211000  000                  00123333333333 3678899999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |+.+..       ..    ...++..+|++++|+|+..+.+..+...+..+... +    .|+++|+||+|....
T Consensus        91 G~~df~-------~~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFT-------ED----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H----TPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T----CCEEEEEECTTSCCS
T ss_pred             CchhHH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc
Confidence            987642       12    23345677999999999977887777777666543 2    289999999998644

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.66  E-value=5.1e-15  Score=126.79  Aligned_cols=172  Identities=14%  Similarity=0.085  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      +.|+|+|++|+|||||+|+|+|.......  ....|.......+ .+++..+.++||||+....  ...+...+...+. 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i-~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAI-PINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEE-EETTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEE-EECCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence            45999999999999999999987753222  1223322222222 3567889999999985421  1222233333333 


Q ss_pred             cCCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          100 AKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .+..+|++++|+|++...  .... ..+...+......+  .|+++|.||+|....  . ....+..     +..+....
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l  323 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL  323 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence            456789999999998432  1111 12234444432122  389999999998754  2 2221111     22222332


Q ss_pred             -CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                       ......    .+.|+..+.+++.|++.|...+...
T Consensus       324 ~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          324 YSPIFDV----IPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CSCEEEE----EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcE----EEEECCCCcCHHHHHHHHHHHhccc
Confidence             211111    3568888999999999999988764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=7.3e-16  Score=120.60  Aligned_cols=129  Identities=11%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+++|++|||||||+|+|++......... ...+...      .+.+..+.+|||||.......       +..+
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~-------~~~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA------DYDGSGVTLVDFPGHVKLRYK-------LSDY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCceee------eecCCeEEEEECCCCchHHHH-------HHHH
Confidence            4568999999999999999999998764221111 1111111      125567889999998764321       1222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-----cCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG-----KNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                      +......+|++++|+|++ .-...-.....++.....     .....|+++|+||+|....  ..+.....
T Consensus       112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~  179 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD  179 (193)
T ss_dssp             HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence            222234569999999997 111111222223333221     0112499999999998766  44544443

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.64  E-value=7.5e-16  Score=134.38  Aligned_cols=165  Identities=15%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc-C-------CCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS-A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~-------~~~~~-~-------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      .....+|+++|++|+|||||+|+|++..       .+... .       ...+.|......... ..+..+.||||||+.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChH
Confidence            3456899999999999999999998630       00000 0       012334433333222 456889999999976


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~  159 (277)
                      +.           ......++..+|++++|+|++.+.......++..+... +.    | +++++||+|..... ..++.
T Consensus        87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~~-~~~~~  149 (405)
T 2c78_A           87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDDP-ELLDL  149 (405)
T ss_dssp             GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCCH-HHHHH
T ss_pred             HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCcH-HHHHH
Confidence            41           22222334677999999999867666677776666553 32    5 88999999987431 22333


Q ss_pred             HhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccChhH------------------HHHHHHHHHHHHh
Q 023779          160 FLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV  209 (277)
Q Consensus       160 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~------------------~~~L~~~i~~~~~  209 (277)
                      ....     +.+++..++.     .++      ..|++.+.+                  +..|++.|...++
T Consensus       150 ~~~~-----~~~~l~~~~~~~~~~~~i------~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          150 VEME-----VRDLLNQYEFPGDEVPVI------RGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHH-----HHHHHHHTTSCTTTSCEE------ECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHH-----HHHHHHHhcccccCCCEE------EccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            3333     5556655542     222      356666665                  7778888877665

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.8e-15  Score=128.56  Aligned_cols=171  Identities=17%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeeEEEEEe-eeCCc--eEEEEeCCCCCCCCCCc----
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSAGS----   86 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~--~~~liDtpG~~~~~~~~----   86 (277)
                      ..+|+|+|++|+|||||+|+|++...+..+..+     ...|......... ...+.  .+.+|||||+++.....    
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            478999999999999999999887765443211     1123322222111 12333  58999999996643211    


Q ss_pred             ---hHHHHHHHHHHhhc---------CCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           87 ---EFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        87 ---~~~~~~~~~~~~~~---------~~~~~~~l~v~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                         ..+...+..++...         ..++|+++|+++. ..++...+..++..+    ...  .|+|+|+||+|.... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~-  189 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL-  189 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence               12222222333221         1345788888886 357777665544443    223  399999999998765 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhH---HHHHHHHHHHHH
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ---VRQLLSLVNSVI  208 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---~~~L~~~i~~~~  208 (277)
                       ..+..+...     +..++...+.+++      .+|+..+.+   +..+...|...+
T Consensus       190 -~ev~~~k~~-----i~~~~~~~~i~~~------~~Sa~~~~~~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 -KERERLKKR-----ILDEIEEHNIKIY------HLPDAESDEDEDFKEQTRLLKASI  235 (361)
T ss_dssp             -HHHHHHHHH-----HHHHTTCC-CCSC------CCC---------CHHHHHHHHHTC
T ss_pred             -HHHHHHHHH-----HHHHHHHCCCCEE------eCCCcCCCcchhHHHHHHHHHhcC
Confidence             445444333     4445544444433      334443433   444555554444

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.64  E-value=4.3e-15  Score=129.15  Aligned_cols=163  Identities=18%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC------ccc----c----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      ..+|+++|++|+|||||+++|++...      +..    .    ....+.|......... ..+..+.||||||+.    
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~----   77 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA----   77 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH----
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH----
Confidence            47999999999999999999986310      000    0    0012344444333222 456789999999943    


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHhcc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l~~  163 (277)
                             ++...+..++..+|++++|+|++.+........+..+... +.    | +++++||+|..... ..++.....
T Consensus        78 -------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v----p~iivviNK~Dl~~~~-~~~~~~~~~  144 (397)
T 1d2e_A           78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV----EHVVVYVNKADAVQDS-EMVELVELE  144 (397)
T ss_dssp             -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred             -------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CeEEEEEECcccCCCH-HHHHHHHHH
Confidence                   3444555567889999999999966767666666665542 32    5 78999999987431 223333333


Q ss_pred             cCCchHHHHHhhcCC-----eEEEEeCCCcccccChh---------H-HHHHHHHHHHHHhh
Q 023779          164 ECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ  210 (277)
Q Consensus       164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~---------~-~~~L~~~i~~~~~~  210 (277)
                           +.+++..++.     .++      ..|+..+.         + +..|++.|...++.
T Consensus       145 -----~~~~l~~~~~~~~~~~~i------~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          145 -----IRELLTEFGYKGEETPII------VGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             -----HHHHHHHTTSCTTTSCEE------ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             -----HHHHHHHcCCCcccCcEE------EeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                 5556665552     222      34555443         4 88999999887754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.63  E-value=1.5e-15  Score=135.35  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC-cc----------------------------ccCCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA-FK----------------------------ASAGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (277)
                      ...+|+++|++|+|||||+|+|++... +.                            ......+.|.......+. ..+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence            347999999999999999999975411 00                            000112445555444443 567


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      ..+.||||||+.+           +......++..+|++++|+|++.+       +.......+..+.. .+.   .|++
T Consensus       111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI  175 (483)
T 3p26_A          111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI  175 (483)
T ss_dssp             CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence            8899999999753           223333345678999999999843       33445555454444 332   2799


Q ss_pred             EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHH
Q 023779          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVR  198 (277)
Q Consensus       142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~  198 (277)
                      ||+||+|........+++....     +..++...+.   ....+    +.|+..+.|+.
T Consensus       176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i----~iSA~~g~gi~  226 (483)
T 3p26_A          176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWV----PISGFSGEGVY  226 (483)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEE----ECCSSSCTTSS
T ss_pred             EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEE----EEeeecCCCcc
Confidence            9999999875311344444444     5556555443   12221    34666666665

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.63  E-value=1.1e-15  Score=131.39  Aligned_cols=150  Identities=15%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|++++|||||+++|+          ..+.|......... +.+..+.+|||||..+.       ...+...    
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~----   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITA----   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHH----
Confidence            89999999999999999998          12334444444333 56778999999998753       1223333    


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EEEEe-CCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      +..+|++++|+| ...........+..+... +.    |. ++++| |+|. ..  ..++.....     +++++...+.
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~  146 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL  146 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence            356799999999 756666666666666543 43    55 88888 9997 43  333333333     5555544331


Q ss_pred             -eEEEEeCCCc--ccccC---hhHHHHHHHHHHHHHhh
Q 023779          179 -RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 -~~~~~~~~~~--~s~~~---~~~~~~L~~~i~~~~~~  210 (277)
                       .+..+    .  .||..   +.++++|++.|...++.
T Consensus       147 ~~~~ii----~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          147 QDWECI----SLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTCEEE----ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             CceEEE----ecccccccCcCCCCHHHHHHHHHhhccc
Confidence             11111    3  57777   89999999998887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.44  E-value=1.9e-17  Score=130.97  Aligned_cols=166  Identities=16%  Similarity=0.052  Sum_probs=94.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+..+|+++|++|+|||||++++++..+.....    .|+..........++  ..+.+|||||...           +.
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~   92 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YD   92 (204)
Confidence            456899999999999999999998765422211    111111111111233  3466999999543           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~  167 (277)
                      .....++..+|++++|+|++.+.+..+  ..++..+.....   ..|+++|+||+|....  ....+.+...     ...
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 3th5_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
Confidence            233334677899999999984333333  234444444322   2489999999997654  2111111100     000


Q ss_pred             hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ....+....+.     ......|++.+.+++++++.|.+.
T Consensus       168 ~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          168 QGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            01122222221     122367888999999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.63  E-value=2.4e-15  Score=132.31  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=96.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC--ccc------------cCC-----------------CCCcceeeEEEEEee
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL   65 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~   65 (277)
                      ...++|+++|++|+|||||+|+|++...  +..            +..                 ..+.|......... 
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-  100 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-  100 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence            3458999999999999999999985431  100            000                 01334443333332 


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      ..+..+.||||||..+.       ...+.    .++..+|++++|+|++.+........+..+... +.   +|+++|+|
T Consensus       101 ~~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN  165 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN  165 (434)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred             cCCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence            46778999999996531       12222    234678999999999977766666666655543 32   26999999


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcC--Ce-EEEEeCCCcccccChhHHHH
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NR-CVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~s~~~~~~~~~  199 (277)
                      |+|........+......     +..++...+  .. +..    .+.|++.+.++.+
T Consensus       166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~----i~vSA~~g~gi~~  213 (434)
T 1zun_B          166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF----VPMSALKGDNVVN  213 (434)
T ss_dssp             CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE----EECCTTTCTTTSS
T ss_pred             cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE----EEEeccCCCCccc
Confidence            999875311233334444     666666666  21 222    1346666677665

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.63  E-value=1.2e-17  Score=148.97  Aligned_cols=161  Identities=14%  Similarity=0.183  Sum_probs=105.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .++|+++|++|+|||||+++|++..+...  ...+.|............+..++||||||..++..           ...
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~   70 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA   70 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence            47899999999999999999987654222  22344544444444323566899999999765322           223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH---Hhh
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI---LQL  175 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~---~~~  175 (277)
                      .++..+|++++|+|++.+....+...+..+...   +.  |++|++||+|........+...        +...   ...
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~  137 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED  137 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence            356778999999999977777777666655542   22  8999999999764311111111        1111   111


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ++..+.    ..+.|++.+.++++|++.|..++.
T Consensus       138 ~~~~~~----iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          138 YGGDVQ----AVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             SSSSEE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             cCCCce----EEEEECCCCCCchhHHHHHHHhhh
Confidence            111111    235688899999999999988764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.61  E-value=2.7e-14  Score=132.20  Aligned_cols=218  Identities=17%  Similarity=0.193  Sum_probs=117.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC--CccccCC--------------CCCcceeeEEEEEeeeCC-------ceEE
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAG--------------SSGVTKTCEMKTTVLKDG-------QVVN   72 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~~--------------~~~~t~~~~~~~~~~~~~-------~~~~   72 (277)
                      ..+.++|+|+|+.|+|||||+++|+...  ....+..              ..+.|......... +.+       ..+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEE
Confidence            3456899999999999999999996421  1000000              12334433333333 444       7899


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ||||||..++       ..+...++    ..+|++|+|+|++.+........+..+...   +  .|+++++||+|....
T Consensus        86 liDTPG~~df-------~~~~~~~l----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDF-------TIEVERSM----RVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccch-------HHHHHHHH----HHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence            9999998753       12333333    456999999999976666666666555432   2  289999999997654


Q ss_pred             ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh-cCCC-----CCChHHHHHHHH
Q 023779          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ-NGGQ-----PYTDELKRGATE  226 (277)
Q Consensus       153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~-~~~~-----~~~~~~~~~~~~  226 (277)
                         .+...++.     ++..   ++.....+.-+...+ ....++-+++..-...... ..+.     ..+.++.+...+
T Consensus       150 ---~~~~~~~~-----l~~~---l~~~~~~~~~Pi~~~-~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  217 (704)
T 2rdo_7          150 ---NFLKVVNQ-----IKTR---LGANPVPLQLAIGAE-EHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANE  217 (704)
T ss_pred             ---cHHHHHHH-----HHHH---hCCCceeEEcccccc-ccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHH
Confidence               34444443     4433   344444444333221 1122333333221111111 0011     133444444444


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 023779          227 LRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMA  264 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (277)
                      .  +.+.++.+.+.+++.++++.+..+...++..+.+.
T Consensus       218 ~--~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~  253 (704)
T 2rdo_7          218 W--HQNLIESAAEASEELMEKYLGGEELTEAEIKGALR  253 (704)
T ss_pred             H--HHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Confidence            3  44555566666677777776654433333333333

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.61  E-value=4.7e-15  Score=125.78  Aligned_cols=166  Identities=16%  Similarity=0.073  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+++|.+|+|||||++.+++......    ...|+..........++..  +.+|||||....           ..
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~  218 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY-----------DR  218 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCS----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG-----------TT
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcc----cCCcccceeEEEEEECCEEEEEEEEeCCCchhh-----------hH
Confidence            348999999999999999999986654222    1222222222222345554  559999996532           12


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----c-CCch
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----E-CPKP  168 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~-~~~~  168 (277)
                      ....++..+|++++|+|++.+.+..+.  .++..+.....   ..|+++|+||+|....  ......+..    . ....
T Consensus       219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  293 (332)
T 2wkq_A          219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  293 (332)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence            233456789999999999843333332  34455555433   2499999999997543  111111110    0 0111


Q ss_pred             HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+....+. .++      .+|++.+.++.++++.|.+.+.
T Consensus       294 ~~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          294 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHHh
Confidence            3344445454 333      4678888999999999987764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.61  E-value=5e-15  Score=134.88  Aligned_cols=159  Identities=15%  Similarity=0.153  Sum_probs=98.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC---------------CCCcceeeEEEEEeeeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLKD   67 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~~   67 (277)
                      ...++|+++|++|+|||||+|+|++....-.              |..               ..+.|.......+. ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence            3458999999999999999999996532100              000               02445544444333 56


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcE
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM  140 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (277)
                      +..+.||||||+.+           +......++..+|++|+|+|++.+       +.......+..+.. .+.   .|+
T Consensus       244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i  308 (611)
T 3izq_1          244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL  308 (611)
T ss_dssp             SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred             CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence            78899999999754           445555667889999999999832       22334444444443 232   269


Q ss_pred             EEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHH
Q 023779          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQL  200 (277)
Q Consensus       141 ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L  200 (277)
                      +||+||+|........++.....     +..++..++.   ....    .+.||..+.|+.++
T Consensus       309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el  362 (611)
T 3izq_1          309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred             EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence            99999999875311334444444     5556555553   1111    14566677777643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.60  E-value=7.7e-15  Score=132.06  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC------------------Cccc--cCCCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK------------------AFKA--SAGSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~------------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtp   77 (277)
                      +.++|+|+|+.++|||||..+|+-..                  +.+.  .....+.|.......+. |++..++|||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence            45899999999999999999986110                  0000  01122455555455444 899999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |+.|+.       .+..+++..+    |+.|+|+|+..+........++.+.+. +-    |.++++||+|....
T Consensus       109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~-~l----p~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR-AT----PVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSCCC
T ss_pred             CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh-CC----ceEEEEecccchhc
Confidence            998875       4777777766    999999999989999998888877764 33    89999999997654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.60  E-value=1e-14  Score=114.20  Aligned_cols=163  Identities=20%  Similarity=0.199  Sum_probs=90.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...+|+|+|.+|||||||+|.+++... +.......+.+  ..... ...++.  .+.+|||+|......       .+ 
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~~~Dt~~~~~~~~-------~~-   73 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERT-LMVDGESATIILLDMWENKGENE-------WL-   73 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEE-EEETTEEEEEEEECCCCC----C-------TT-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEE-EEECCeEEEEEEEEeccCcchhh-------hH-
Confidence            348999999999999999999986322 22211111111  11111 224554  457899998543100       01 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                        ...++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........++         ...+.
T Consensus        74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a  141 (192)
T 2cjw_A           74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAXA  141 (192)
T ss_dssp             --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHHH
Confidence              1122345699999999984322222 233344444321 1123899999999975431011111         11222


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ...+..++      ++||+.+.++.++++.+.+.+.
T Consensus       142 ~~~~~~~~------e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          142 VVFDXKFI------ETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             HHTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHhCCceE------EeccccCCCHHHHHHHHHHHHH
Confidence            23333333      5688889999999999887664

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.60  E-value=9.7e-15  Score=116.46  Aligned_cols=122  Identities=13%  Similarity=0.144  Sum_probs=73.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ....+|+|+|++|+|||||+|+|++........ ....+...      .+....+.+|||||....       ...+..+
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~-------~~~~~~~   75 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKL-------RYKLSDY   75 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET------TGGGSSCEEEECCCCGGG-------THHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE------EeeCceEEEEECCCcHHH-------HHHHHHH
Confidence            456899999999999999999999776422211 11112111      124567899999997542       1223333


Q ss_pred             HhhcCCCccEEEEEEeCC---CCCCHHHHHHHHHHHHHhC-cCccCcEEEEEeCCCCCCc
Q 023779           97 LGMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNLFG-KNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~  152 (277)
                      +......+|++++|+|++   ..+......+...+..... .....|+++|+||+|....
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            332223469999999998   2333333333333322110 0112499999999998765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.59  E-value=1.2e-14  Score=127.92  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=90.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-c------------c---------------CCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-A------------S---------------AGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~-~------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (277)
                      ..++|+++|+.|+|||||+++|++.. .+. .            |               ....+.|.......+. +.+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence            45899999999999999999998531 110 0            0               0012344444433333 567


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      ..+.||||||+.+           +......++..+|++++|+|+...       +.......+..+.. .+.   .|++
T Consensus        84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~ii  148 (435)
T 1jny_A           84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI  148 (435)
T ss_dssp             CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred             eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEE
Confidence            8899999999765           233344467889999999999843       22334444444443 232   2699


Q ss_pred             EEEeCCCCCCcc--cccHHHHhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccChhHHH
Q 023779          142 VVFTGGDDLEDH--EKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVR  198 (277)
Q Consensus       142 vv~nk~D~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~  198 (277)
                      |++||+|.....  ...++.....     +..++...+.     .++      +.|+..+.++.
T Consensus       149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i------~iSA~~g~~v~  201 (435)
T 1jny_A          149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFV------PVVAPSGDNIT  201 (435)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEE------ECBTTTTBTTT
T ss_pred             EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEE------EeecccCcccc
Confidence            999999987520  1233444444     6666666552     233      34566666664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.59  E-value=1.1e-14  Score=114.60  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|++|||||||++.|+|........  ...+.......+ ..++.  .+.+|||||......           .
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i-~~~g~~~~~~i~Dt~g~~~~~~-----------~   70 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSI-QVDGKTIKAQIWDTAGQERYRR-----------I   70 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEE-EETTEEEEEEEEECSSGGGTTC-----------C
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEE-EECCEEEEEEEEECCCchhhhh-----------h
Confidence            4799999999999999999999876422211  111122212222 24554  467899999543211           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..++++++|+|+....+..+ ..++..+......  ..|+++|+||+|...........         .+.+...
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~  139 (199)
T 2f9l_A           71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK  139 (199)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence            1112356799999999983322222 2233333332222  24899999999975431111111         3344444


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..  .+.    +|+..+.++.++++.|...+..
T Consensus       140 ~~~~--~~d----~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          140 NNLS--FIE----TSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TTCE--EEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCe--EEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence            4433  233    5777788999999988876643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.58  E-value=3e-15  Score=138.43  Aligned_cols=128  Identities=24%  Similarity=0.311  Sum_probs=83.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc-------CC-------CCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKAS-------AG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      ..+.++|+|+|++|+|||||+|+|++..  ....+       ..       ..+.|........ .+.+..+.||||||+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA-AWEGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEE-EETTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEE-EECCeeEEEEECcCC
Confidence            3456899999999999999999998311  10000       00       1223333333333 367889999999999


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~  159 (277)
                      .+..       .....++.    .+|++|+|+|+..+.+..+...+..+... +    .|+++|+||+|....   .+..
T Consensus        86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~~---~~~~  146 (693)
T 2xex_A           86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY-G----VPRIVFVNKMDKLGA---NFEY  146 (693)
T ss_dssp             SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC---CHHH
T ss_pred             cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc-C----CCEEEEEECCCcccc---chHH
Confidence            7642       23344443    35999999999977887777777766552 3    289999999997654   3444


Q ss_pred             Hhcc
Q 023779          160 FLGH  163 (277)
Q Consensus       160 ~l~~  163 (277)
                      .++.
T Consensus       147 ~~~~  150 (693)
T 2xex_A          147 SVST  150 (693)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.58  E-value=3.2e-14  Score=123.60  Aligned_cols=171  Identities=18%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeeEEEEEee-eCC--ceEEEEeCCCCCCCCCCc---h
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---E   87 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~---~   87 (277)
                      -.++|+|+|++|+|||||+|+|+|...+..+...    ...|.......... ..+  ..+++|||||++......   .
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            3478999999999999999999998764333110    11222211111111 112  258899999998642111   1


Q ss_pred             HHHHHHHHHH-----------hhcC--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           88 FVGKEIVKCL-----------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        88 ~~~~~~~~~~-----------~~~~--~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                      .+...+...+           ...+  +.+|++||++..+ .++...+..++..+..    .  .|+|+|+||+|.... 
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~-  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP-  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH-
Confidence            1111111111           1122  3355677777765 4788777655555542    2  389999999998866 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                       ..+..+...     +...+...+.+++.+      |+....++..++..+...
T Consensus       183 -~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          183 -EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             -HHHHHHHHH-----HHHHHHHHTCCCCCC------C-----------------
T ss_pred             -HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHhh
Confidence             556655554     555555555554432      333445555555555443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.58  E-value=1.6e-14  Score=130.72  Aligned_cols=164  Identities=18%  Similarity=0.196  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c-----------CCCCCcceeeEEEEEeee--C--CceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~   80 (277)
                      +.++|+|+|+.|+|||||+++|+.... ... .           ....+.|...........  +  +..+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            347999999999999999999974210 000 0           001233433333333211  2  2578999999976


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~  160 (277)
                      ++       ..++...+..    +|++++|+|++.+.+..+...+..+...   +  .|+++|+||+|....   ..+..
T Consensus        83 dF-------~~ev~~~l~~----aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a---~~~~v  143 (599)
T 3cb4_D           83 DF-------SYEVSRSLAA----CEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAA---DPERV  143 (599)
T ss_dssp             GG-------HHHHHHHHHH----CSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTC---CHHHH
T ss_pred             HH-------HHHHHHHHHH----CCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCcccc---cHHHH
Confidence            52       2344444443    4999999999877777666655544432   2  289999999997654   23333


Q ss_pred             hcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...     +.+   .++..   .......|++.+.++++|++.|...++..
T Consensus       144 ~~e-----i~~---~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          144 AEE-----IED---IVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHH-----HHH---HTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHH-----HHH---HhCCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            322     332   22321   01233568888999999999999887653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.57  E-value=1.2e-14  Score=131.62  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-----------------eCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtpG~~~   81 (277)
                      .++|+++|++|+|||||+++|++..+....  +.+.|.+........                 +....+.||||||+.+
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            478999999999999999999875432111  112222221111110                 1122589999999876


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~  151 (277)
                      +...           ...++..+|++++|+|++.++.......+..+... +    .|+++++||+|...
T Consensus        83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIH  136 (594)
T ss_dssp             CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred             HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence            5321           12345678999999999977877777777766652 2    28999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.57  E-value=1.9e-14  Score=130.08  Aligned_cols=164  Identities=16%  Similarity=0.226  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc-----------CCCCCcceeeEEEEEeee--CC--ceEEEEeCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK--AFKAS-----------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLF   80 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~-----------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtpG~~   80 (277)
                      +.++|+++|+.|+|||||+++|+...  ....+           ....+.|...........  ++  ..+.||||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            45799999999999999999997421  00000           001223333222222211  22  568899999987


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~  160 (277)
                      ++       ..++...+    ..+|++++|+|++.+.+..+...+..+...   +  .|+++++||+|....   ..+..
T Consensus        85 dF-------~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a---~~~~v  145 (600)
T 2ywe_A           85 DF-------SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSA---DVDRV  145 (600)
T ss_dssp             GG-------HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTC---CHHHH
T ss_pred             hH-------HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCcccc---CHHHH
Confidence            52       23444444    355999999999977777776665554432   2  289999999997654   23322


Q ss_pred             hcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      ...        +...++...   ......|++.+.++.+|++.|.+.++..
T Consensus       146 ~~e--------l~~~lg~~~---~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          146 KKQ--------IEEVLGLDP---EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             HHH--------HHHTSCCCG---GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHH--------HHHhhCCCc---ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            222        222223210   1234568899999999999998887653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.57  E-value=8.6e-15  Score=135.32  Aligned_cols=122  Identities=21%  Similarity=0.253  Sum_probs=79.4

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCC--CccccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtp   77 (277)
                      .+....++|+|+|++|+|||||+++|+...  ....+.              ...+.|........ .+.+..+.|||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTP   85 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTP   85 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECc
Confidence            344567899999999999999999998211  000000              01233443333333 3678899999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |+.+.       ......++.    .+|++++|+|+..+.+..+...+..+... +    .|+++|+||+|....
T Consensus        86 G~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred             Cccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCcccC
Confidence            98753       233444443    45999999999977777777766665542 2    289999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=6.1e-15  Score=132.86  Aligned_cols=137  Identities=20%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--------------------------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------------------------   64 (277)
                      ....+|+|+|.+|+|||||+|+|+|..+.....+..+.|.........                                
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            456899999999999999999999987631112222222221110000                                


Q ss_pred             ----eeCC---ceEEEEeCCCCCCCCCCchHHHHH--HHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCc
Q 023779           65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK  134 (277)
Q Consensus        65 ----~~~~---~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~~~~~l~~~~~~  134 (277)
                          .+.+   ..+.||||||+.+.....  +...  +......++..+|++++|+|++. .+...+..++..+...   
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence                0000   368999999998632110  0000  12222223346699999999984 4566666666555432   


Q ss_pred             CccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779          135 NVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus       135 ~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                      .  .|+++|+||+|....  ..+...+.
T Consensus       218 ~--~pvilVlNK~Dl~~~--~el~~~~~  241 (550)
T 2qpt_A          218 E--DKIRVVLNKADMVET--QQLMRVYG  241 (550)
T ss_dssp             G--GGEEEEEECGGGSCH--HHHHHHHH
T ss_pred             C--CCEEEEEECCCccCH--HHHHHHHH
Confidence            1  389999999998866  45555444

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.56  E-value=8.7e-14  Score=132.12  Aligned_cols=164  Identities=18%  Similarity=0.199  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      ....+|+++|++++|||||+++|++...      +.    .    .....+.|......... ..+..+.||||||..  
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHe--  370 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHA--  370 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHH--
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChH--
Confidence            4558999999999999999999986310      00    0    00112333333222222 456789999999943  


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                               ++......++..+|++++|+|+..+........+..+... +.    | ++|++||+|..... ..++...
T Consensus       371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d~-e~le~i~  435 (1289)
T 3avx_A          371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDDE-ELLELVE  435 (1289)
T ss_dssp             ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCCH-HHHHHHH
T ss_pred             ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccch-hhHHHHH
Confidence                     3445555567899999999999866666666666666543 33    5 78999999987531 2233333


Q ss_pred             cccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh--------hHHHHHHHHHHHHHh
Q 023779          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV  209 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~--------~~~~~L~~~i~~~~~  209 (277)
                      ..     +..++...+.     .++      +.|+..+        .++..|++.|...++
T Consensus       436 eE-----i~elLk~~G~~~~~vp~I------pvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          436 ME-----VRELLSQYDFPGDDTPIV------RGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HH-----HHHHHHHTTSCTTTCCEE------ECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HH-----HHHHHHhccccccceeEE------EEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            33     5556665542     233      3455555        578888888887664

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.56  E-value=3.1e-15  Score=129.50  Aligned_cols=90  Identities=13%  Similarity=0.064  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EEEEE------------------eeeC---CceEEEEeC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTT------------------VLKD---GQVVNVIDT   76 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~------------------~~~~---~~~~~liDt   76 (277)
                      .+|+|+|.+|||||||+|+|++... .... ...+|...  .....                  ..++   ...+.||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~-~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EIAN-YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cccC-CCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            4799999999999999999998762 1111 11122211  11100                  0112   246899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~  115 (277)
                      ||+.......    ..+...+...++.+|++++|+|+..
T Consensus        79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEeccc
Confidence            9986532111    1122222345688999999999984

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.55  E-value=2e-14  Score=117.64  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             CccEEEEEEeCCCC--CCHHH-HHHHHHHHHH-hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-C
Q 023779          103 GIHAFLVVFSVTNR--FSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D  177 (277)
Q Consensus       103 ~~~~~l~v~d~~~~--~~~~~-~~~~~~l~~~-~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~  177 (277)
                      ++|++++|+|++.+  .+... ..++..+... ....  .|++||+||+|....  ..+    ..     ...+.... +
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v----~~-----~~~~~~~~~~  228 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYI----RD-----AHTFALSKKN  228 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHH----HH-----HHHHHHTSSS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHH----HH-----HHHHHHhcCC
Confidence            58999999999844  44443 2344444433 1122  399999999997543  222    12     33343332 3


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..++      .+|++.+.++.++++.|.+.+
T Consensus       229 ~~~~------e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          229 LQVV------ETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence            3333      468888899999999987765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.55  E-value=1.9e-14  Score=129.92  Aligned_cols=164  Identities=13%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE----EEe---eeCCceEEEEeCCCCCCCCCCchHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK----TTV---LKDGQVVNVIDTPGLFDLSAGSEFV   89 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~---~~~~~~~~liDtpG~~~~~~~~~~~   89 (277)
                      ....+|+|+|.+|||||||+|+|++..+........+.+......    ...   ...+..+.+|||||.......    
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~----  114 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS----  114 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT----
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH----
Confidence            355899999999999999999999876422111111111111000    011   012467999999995543221    


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (277)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~  169 (277)
                      ..   .+    +.++|++++|+|++ .. .....++..+..... +  .|++||+||+|.........+.         +
T Consensus       115 ~~---~~----l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~---------~  173 (535)
T 3dpu_A          115 HQ---FF----MTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK---------I  173 (535)
T ss_dssp             CH---HH----HHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH---------H
T ss_pred             HH---HH----ccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH---------H
Confidence            11   11    23569999999998 33 233456666666532 2  4999999999986541112211         2


Q ss_pred             HHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      +......+..++      ..|++.+.|+++|++.|...+...
T Consensus       174 ~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          174 NERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTCT
T ss_pred             HHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhcc
Confidence            333334444444      468888899999999999988653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.55  E-value=2.6e-16  Score=139.39  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      +.++|+++|++++|||||+++|++..+....  ..+.|.....+... +++..++||||||+.++...           .
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~-----------~   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSM-----------R   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTS-----------B
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHH-----------H
Confidence            3478999999999999999999864432111  12334443333332 56778999999998764321           1


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ...+..+|++++|+|+..+........+..+... +.    |+++++||+|........+...+..     ...+.+..+
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~v----PiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~  138 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-QV----PVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWG  138 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-TC----CEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCS
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-Cc----eEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhC
Confidence            2345678999999999865555555555555432 32    8999999999864311122111111     000001112


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ..+..    .+.|++.+.++++|++.|..
T Consensus       139 ~~~~~----v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          139 GESQF----VHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             SSCEE----EECCTTTCTTCTTHHHHTTT
T ss_pred             CCccE----EEEeeeeccCcchhhhhhhh
Confidence            11111    25688888999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.54  E-value=3.8e-14  Score=125.30  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-------------ccCC---------------CCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-------------ASAG---------------SSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~-------------~~~~---------------~~~~t~~~~~~~~~~~~~   68 (277)
                      ..++|+++|++|+|||||+|+|++.. .+.             .|..               ..+.|.......+. ..+
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence            34899999999999999999998541 110             0000               12345444444333 567


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      ..+.||||||+.+           +......++..+|++++|+|++.+...       .....+..+.. .+.   .+++
T Consensus        85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI  149 (458)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence            7899999999653           334445567889999999999832211       23333333333 232   2599


Q ss_pred             EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      |++||+|........++.....     +..++...+
T Consensus       150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g  180 (458)
T 1f60_A          150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG  180 (458)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred             EEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence            9999999873211334444444     555655554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.54  E-value=2e-13  Score=116.31  Aligned_cols=111  Identities=11%  Similarity=0.093  Sum_probs=63.7

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHH-HHhCcCccCcEEEEE
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVF  144 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ivv~  144 (277)
                      +.+..+.||||||+.+.    .   ..   .    ...+|++++|+|++...   .   +..+. ...+    .|.++|+
T Consensus       146 ~~~~~i~liDTpG~~~~----~---~~---~----~~~aD~vl~Vvd~~~~~---~---~~~l~~~~~~----~p~ivv~  201 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQS----E---TE---V----ARMVDCFISLQIAGGGD---D---LQGIKKGLME----VADLIVI  201 (341)
T ss_dssp             HTTCSEEEEEEECCTTH----H---HH---H----HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEE
T ss_pred             ccCCCEEEEeCCCccch----H---HH---H----HHhCCEEEEEEeCCccH---H---HHHHHHhhhc----ccCEEEE
Confidence            45678999999998752    1   11   1    25779999999987221   1   01111 1111    2789999


Q ss_pred             eCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ||+|....  ..+...+..     ++..+...+.   .+.  ....+.|++.+.+++.|++.|...+.
T Consensus       202 NK~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~--~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          202 NKDDGDNH--TNVAIARHM-----YESALHILRRKYDEWQ--PRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBC--CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCh--HHHHHHHHH-----HHHHHHhccccccCCC--CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            99997654  334333333     3333332221   000  01124688888999999999988765

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.9e-14  Score=121.85  Aligned_cols=124  Identities=14%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ...+|+|||.||||||||+|+|++.....   ...+.|+.........+.+..+.|+||||+.........+...+...+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v---~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEA---AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCG---GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            33689999999999999999999876422   222333333334445588999999999999865433334445555554


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC-ccCcEEEEEeCCCCC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL  150 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~  150 (277)
                      .    .+|++++|+|++.++  .+...+..-...++.. ..+|.++++||.|..
T Consensus       148 ~----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          148 R----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             H----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             H----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            4    459999999998432  2222222212222322 234888999999964

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.53  E-value=6.8e-14  Score=109.38  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=92.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ...+|+|+|++|||||||++.|++.......  ..+.+....... ...++..  +.+|||||.......          
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~-i~~~g~~~~~~i~Dt~g~~~~~~~----------   94 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRS-IQVDGKTIKAQIWDTAGLERYRAI----------   94 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEE-EEETTEEEEEEEEEECSCCSSSCC----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEE-EEECCEEEEEEEEECCCCcchhhh----------
Confidence            3479999999999999999999987653221  122222222222 2245554  457999997643211          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                       ....+..++++++|+|+....+... ..++..+.....  ...|+++++||+|...........         .+.+..
T Consensus        95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~  162 (191)
T 1oix_A           95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDE---------ARAFAE  162 (191)
T ss_dssp             -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence             1112345689999999873221111 123333333222  224899999999975321011111         333444


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+.  ..+.    +|+..+.++.++++.|.+.+
T Consensus       163 ~~~~--~~ld----~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          163 KNGL--SFIE----TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HTTC--EEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCC--EEEE----EeCCCCCCHHHHHHHHHHHh
Confidence            4333  2333    57777889999999887653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.51  E-value=3.1e-13  Score=117.30  Aligned_cols=168  Identities=15%  Similarity=0.108  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..|+|+|++|||||||+|+|++......+.  ...|....... ..+.+ ..++++||||+.........+...+...  
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--  232 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGV-VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH--  232 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEE-EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeE-EEecCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence            468999999999999999999875422211  11122222222 22343 7799999999865311111111222222  


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                        ...++++++++|++ +-...+ ....+.+..+...-..+|.++|+||+|....  .    .+..     +...+...+
T Consensus       233 --~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~----~~~~-----l~~~l~~~g  298 (416)
T 1udx_A          233 --IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--E----AVKA-----LADALAREG  298 (416)
T ss_dssp             --HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H----HHHH-----HHHHHHTTT
T ss_pred             --HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--H----HHHH-----HHHHHHhcC
Confidence              24569999999996 222222 1222222222100012389999999996533  2    2222     333433333


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~  212 (277)
                      ..++      ..|+....++++|++.|...+....
T Consensus       299 ~~vi------~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          299 LAVL------PVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             SCEE------ECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             CeEE------EEECCCccCHHHHHHHHHHHHHhcc
Confidence            3333      3577788999999999999987643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.50  E-value=3.9e-13  Score=112.42  Aligned_cols=172  Identities=16%  Similarity=0.117  Sum_probs=79.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC-CccccCCC----CCcceeeEEEEEee-eC--CceEEEEeCCCCCCCCCC---c
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGS----SGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAG---S   86 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~~~~~----~~~t~~~~~~~~~~-~~--~~~~~liDtpG~~~~~~~---~   86 (277)
                      -..+|+|+|++|+|||||+|+|+|.. .+..+...    ...+.......... ..  ...+++|||||++.....   .
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            34899999999999999999999873 33333110    01122111111111 11  246899999999543210   1


Q ss_pred             hHHHHHHH----HHHhhc---------CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           87 EFVGKEIV----KCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        87 ~~~~~~~~----~~~~~~---------~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+...+.    ..+...         ...+++++|+.+.. .++...+.   +.++.+.. .  .|+++|+||+|....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~--~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K--VNIVPVIAKADTLTL  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T--SCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c--CCEEEEEEeCCCCCH
Confidence            11222111    222111         12346677777654 34777664   34444322 2  289999999998755


Q ss_pred             ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                        ..+..+...     ..+++...+..+      ..+|++.+ ++++++..+.+.+.
T Consensus       171 --~e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          171 --KERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             --HHHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHH
T ss_pred             --HHHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhh
Confidence              334333333     455555555333      24577777 88888887777654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.49  E-value=8.9e-16  Score=139.42  Aligned_cols=168  Identities=16%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEEEEEeeeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKD   67 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (277)
                      ...++|+++|++|+|||||+|+|++.....              .|               ....+.|.......+. ..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-SD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-eC
Confidence            355789999999999999999996421000              00               0012344444444333 45


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCcCccCcE
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM  140 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~  140 (277)
                      +..+.||||||+.+...           .+..++..+|++|+|+|++.+     +  .......+..+.. .+..   ++
T Consensus       254 ~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i  318 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI  318 (592)
T ss_dssp             -----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred             CeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence            67899999999775311           112234567999999999842     3  4555555555554 3431   49


Q ss_pred             EEEEeCCCCCCcccccHHHHhcccCCchHHHHH-hhcCCe---EEEEeCCCcccccChhHHH--------------HHHH
Q 023779          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDNR---CVLFDNKTKDEAKGTEQVR--------------QLLS  202 (277)
Q Consensus       141 ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~s~~~~~~~~--------------~L~~  202 (277)
                      |||+||+|........+......     +..++ ...+..   +.+    .+.|+..+.|+.              .|++
T Consensus       319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~e~~~~~~~~w~~g~~Lle  389 (592)
T 3mca_A          319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLIQKDSSDLYKWYKGPTLLS  389 (592)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSCSCCCCGGGGTCCSCCHHH
T ss_pred             EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccccccccccccccchHHHHH
Confidence            99999999865211344444444     56665 444431   111    245667777776              6888


Q ss_pred             HHHHHHh
Q 023779          203 LVNSVIV  209 (277)
Q Consensus       203 ~i~~~~~  209 (277)
                      .|...++
T Consensus       390 ~l~~~~p  396 (592)
T 3mca_A          390 ALDQLVP  396 (592)
T ss_dssp             HHHTSCC
T ss_pred             HHHhhcc
Confidence            7776554

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.49  E-value=2.2e-13  Score=122.07  Aligned_cols=118  Identities=16%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC------------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtp   77 (277)
                      +.++|+|+|++|+|||||+++|++....  ..+.                  ...+.|.......+ .+.+..+.|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-PYHDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-EETTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-EECCeEEEEEECC
Confidence            4589999999999999999999853210  0000                  01122222222223 3678899999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      |..+..       ....    .++..+|++++|+|+..+........+..+...   +  .|+++++||+|....
T Consensus        91 G~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCS
T ss_pred             CChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCccc
Confidence            987642       1222    234577999999999866766665555544431   2  289999999998654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.47  E-value=1.3e-13  Score=122.10  Aligned_cols=159  Identities=16%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-------------cc---------------CCCCCcceeeEEEEEeeeC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-------------AS---------------AGSSGVTKTCEMKTTVLKD   67 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~-~~~-------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (277)
                      ...++|+++|+.++|||||+++|+... .+.             .|               ....+.|.......+. ++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence            345799999999999999999997321 000             00               0012344444433333 56


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcE
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYM  140 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~  140 (277)
                      +..+.||||||..+           +.......+..+|++++|+|+..+.       .......+..+.. .+.   .++
T Consensus       120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i  184 (467)
T 1r5b_A          120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL  184 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred             CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence            78899999999654           2333344567889999999998432       1233444444433 232   139


Q ss_pred             EEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhc-CC----eEEEEeCCCcccccChhHHHHH
Q 023779          141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN----RCVLFDNKTKDEAKGTEQVRQL  200 (277)
Q Consensus       141 ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~s~~~~~~~~~L  200 (277)
                      +|++||+|....  ....++.....     +..++... +.    .+..    .+.|+..+.++.++
T Consensus       185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~----i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY----MPVSAYTGQNVKDR  242 (467)
T ss_dssp             EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE----EECBTTTTBTTSSC
T ss_pred             EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE----Eecccccccccccc
Confidence            999999998542  01233444433     55555544 32    1222    13466666666543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.47  E-value=7.7e-13  Score=110.54  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+++|.+||||||+++.+.+... +......++|........  .....+.+|||||......+.      +  ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence            589999999999999998876533 221112233433332222  133679999999977542111      0  11234


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHH--hCcCccCcEEEEEeCCCCCCc
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      +++++++++|+|++.++...-..+..++...  ..++  .|+++++||+|....
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence            6789999999999955333323333334322  1233  399999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.47  E-value=4.6e-13  Score=114.64  Aligned_cols=108  Identities=16%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .+..+.||||||+...          ....    ...+|++++|+|.......      ..+....   ...|+++|+||
T Consensus       170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence            4678999999997641          1111    2567999999998722111      1111100   11389999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcC-------CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +|....  .........     +...+....       ..++      ..|+..+.|+++|++.|...++.
T Consensus       227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi------~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVL------TMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEE------EEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceE------EEEcCCCCCHHHHHHHHHHHHHH
Confidence            997644  333333333     433332221       2222      46888899999999999998865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=112.96  Aligned_cols=150  Identities=19%  Similarity=0.253  Sum_probs=89.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----CcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCc---hH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF   88 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~---~~   88 (277)
                      .+++|+|++|+|||||+|+|+|...+..|....     ..+............   ...++++|+||++......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            689999999999999999999877655542211     111111111111111   1358999999998643211   12


Q ss_pred             HHH----HHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779           89 VGK----EIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (277)
Q Consensus        89 ~~~----~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~  153 (277)
                      +..    .+...+..          ....+++.++++|.. .+++..+...+..+...      .++++|+||+|.+.. 
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~-  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL-  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence            222    22222211          112358889999865 68888887777776653      289999999999887 


Q ss_pred             cccHHHHhcccCCchHHHHHhhcCCeEEE
Q 023779          154 EKTLEDFLGHECPKPLKEILQLCDNRCVL  182 (277)
Q Consensus       154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  182 (277)
                       ..+..+...     ++..+...+..++.
T Consensus       156 -~e~~~~k~~-----i~~~l~~~~i~i~~  178 (270)
T 3sop_A          156 -EEKSEFKQR-----VRKELEVNGIEFYP  178 (270)
T ss_dssp             -HHHHHHHHH-----HHHHHHHTTCCCSS
T ss_pred             -HHHHHHHHH-----HHHHHHHcCccccC
Confidence             667666665     66666666655544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=4.4e-13  Score=116.01  Aligned_cols=133  Identities=18%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCC--CCcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCc---h----H
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS--SGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS---E----F   88 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~---~----~   88 (277)
                      +++|+|++|+|||||+|+|+|..+.......  .+.+..  .........   ..++++|+||++......   .    .
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4999999999999999999998642111111  112221  111111122   268999999998642211   1    1


Q ss_pred             HHHHHHHHHhhc---------CCC--ccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc
Q 023779           89 VGKEIVKCLGMA---------KDG--IHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT  156 (277)
Q Consensus        89 ~~~~~~~~~~~~---------~~~--~~~-~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~  156 (277)
                      +...+..++...         .+.  +|+ +++++|++.+++..+..+++.+.    ..  .|+|+|+||+|.+..  ..
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~--~~vI~Vi~KtD~Lt~--~E  193 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SK--VNIIPIIAKADAISK--SE  193 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SC--SEEEEEESCGGGSCH--HH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hC--CCEEEEEcchhccch--HH
Confidence            222333333322         112  344 66777777778888866666554    22  299999999999877  55


Q ss_pred             HHHHhcc
Q 023779          157 LEDFLGH  163 (277)
Q Consensus       157 l~~~l~~  163 (277)
                      +..+...
T Consensus       194 ~~~l~~~  200 (427)
T 2qag_B          194 LTKFKIK  200 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555554

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.46  E-value=4e-14  Score=129.83  Aligned_cols=116  Identities=21%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh---CCCCccccCCC--------------CCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~---~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      .++|+|+||.++|||||..+|+   |... ..|...              .+.|.......+. |++..++||||||+.|
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~-~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAIT-ELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCS-SCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCc-cccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHH
Confidence            3689999999999999999985   2110 011000              1445544444444 7889999999999998


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      +       ..++..++..+    |+.++|+|+..+....++..++.+.+. +-    |.++++||+|....
T Consensus        80 F-------~~Ev~raL~~~----DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a  134 (638)
T 3j25_A           80 F-------LAEVYRSLSVL----DGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI  134 (638)
T ss_dssp             T-------HHHHHHHHTTC----SEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred             H-------HHHHHHHHHHh----CEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence            5       34667776554    999999999988988888888888775 33    78999999997654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.46  E-value=1e-12  Score=121.15  Aligned_cols=117  Identities=27%  Similarity=0.253  Sum_probs=79.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~   80 (277)
                      ....+|+|+|++|+|||||+++|++....  ..|..              ..+.+........ .+.+..+.||||||..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence            35589999999999999999999843321  11100              0123333333333 3567889999999976


Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (277)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~  150 (277)
                      +.       ...+...+.    .+|++++|+|+..++......++..+... +.    |+++++||+|..
T Consensus        86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG  139 (665)
T ss_dssp             GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred             ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence            42       233444443    45999999999877887777777766653 32    899999999976

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.45  E-value=1.3e-13  Score=128.06  Aligned_cols=130  Identities=27%  Similarity=0.293  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCC--------C------ccc--cCCCCCcceeeEEEEEeee------CCceEE
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRK--------A------FKA--SAGSSGVTKTCEMKTTVLK------DGQVVN   72 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~--------~------~~~--~~~~~~~t~~~~~~~~~~~------~~~~~~   72 (277)
                      |-++-++|+|+|+.++|||||..+|+-..        +      .+.  .....+.|.......+.+.      ++..++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            44567899999999999999999886111        0      000  0111244444444433311      256799


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ||||||+.|+       ..+...++..+    |+.|+|+|+..+....++..++.+...   +.  |.++++||+|....
T Consensus        89 lIDTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a  152 (709)
T 4fn5_A           89 VIDTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA  152 (709)
T ss_dssp             EECCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred             EEeCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence            9999999986       35778888777    999999999999999998888887765   33  89999999997654


Q ss_pred             ccccHHHHhcc
Q 023779          153 HEKTLEDFLGH  163 (277)
Q Consensus       153 ~~~~l~~~l~~  163 (277)
                         .+...+.+
T Consensus       153 ---~~~~~~~e  160 (709)
T 4fn5_A          153 ---NFLRVVEQ  160 (709)
T ss_dssp             ---CHHHHHHH
T ss_pred             ---cHHHHHHH
Confidence               44444443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.43  E-value=5e-12  Score=107.84  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .+..+.|+||||+...    +      ...    ...+|++++|+|++.+.   +...+.  ..++.    .|.++|+||
T Consensus       165 ~~~~~iliDT~Gi~~~----~------~~l----~~~~d~vl~V~d~~~~~---~~~~i~--~~il~----~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVGQS----E------FAV----ADMVDMFVLLLPPAGGD---ELQGIK--RGIIE----MADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC--C----H------HHH----HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred             CCCCEEEEECCCcchh----h------hhH----HhhCCEEEEEEcCCcch---hHHHhH--HHHHh----cCCEEEEee
Confidence            5677899999998642    1      111    24679999999987321   111111  11222    278999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhc-------CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +|....  ......+..     +...+...       ...++      ..|+..+.++++|++.|...++.
T Consensus       222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi------~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVI------RISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence            997643  222111221     22222111       11222      36888889999999999988754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=6.9e-12  Score=106.60  Aligned_cols=88  Identities=16%  Similarity=0.056  Sum_probs=51.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDL   82 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~   82 (277)
                      .+|+|+|.+|||||||+|+|++....... . ..+|......... +.+                 ..+.+|||||+...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~-~-p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN-Y-PFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccC-C-CCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            68999999999999999999986631111 1 1112221111111 222                 46899999998753


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ......+...+...    ++.+|++++|+|++
T Consensus        80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~  107 (363)
T 1jal_A           80 ASKGEGLGNKFLAN----IRETDAIGHVVRCF  107 (363)
T ss_dssp             HHHHGGGTCCHHHH----HHTCSEEEEEEECS
T ss_pred             ccccchHHHHHHHH----HHhcCeEEEEEecC
Confidence            21111122222222    35679999999997

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.29  E-value=1.1e-11  Score=116.95  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=74.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccc--c------------CCCCCcceeeEEEEEeee---------------CC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--S------------AGSSGVTKTCEMKTTVLK---------------DG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~--~------------~~~~~~t~~~~~~~~~~~---------------~~   68 (277)
                      ..++|+|+|+.|+|||||+++|++......  +            ....+.|...........               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            457999999999999999999985311000  0            001122332222222211               15


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.||||||..++.       .+...++    +.+|++++|+|+..+.+..+...+..+...   +  .|+++++||+|
T Consensus        98 ~~i~liDTPG~~df~-------~~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D  161 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD  161 (842)
T ss_dssp             EEEEEECCCCCCSSC-------HHHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred             ceEEEEECcCchhhH-------HHHHHHH----HhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence            679999999988743       2333343    456999999999977777776655544432   2  28999999999


Q ss_pred             CC
Q 023779          149 DL  150 (277)
Q Consensus       149 ~~  150 (277)
                      ..
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.29  E-value=2.2e-11  Score=104.16  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee--------------------eCCceEEEEeCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KDGQVVNVIDTPGL   79 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~~liDtpG~   79 (277)
                      .+|+|+|.+|+|||||+|+|++... ..... ...|..........                    ..+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~-p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA-LAANY-PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT-TCSSC-CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-cccCC-CCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999997642 11111 11122111111110                    12356899999999


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .........+...+...+    +.+|++++|+|+.
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~  110 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCF  110 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECC
Confidence            865433333334444443    4569999999997

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.26  E-value=4.5e-11  Score=109.05  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCccee----------e-EEE---------------------------
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT----------C-EMK---------------------------   61 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~----------~-~~~---------------------------   61 (277)
                      .|+|+|++|||||||+++|+|...+ .+|......+.-          . ...                           
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~  126 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA  126 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence            4999999999999999999998644 344322211110          0 000                           


Q ss_pred             -------------EEeeeCCceEEEEeCCCCCC--CCCCchHHHHHHHHHHhhcCCCc-cEEEEEEeCCCCCCHHHHHHH
Q 023779           62 -------------TTVLKDGQVVNVIDTPGLFD--LSAGSEFVGKEIVKCLGMAKDGI-HAFLVVFSVTNRFSQEEETAV  125 (277)
Q Consensus        62 -------------~~~~~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~~~~~  125 (277)
                                   .........+.++|.||+..  +.+.+......+...+..+.... .+++++++....+.  ....+
T Consensus       127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l  204 (608)
T 3szr_A          127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEAL  204 (608)
T ss_dssp             CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHH
T ss_pred             CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHH
Confidence                         00001123589999999876  33344455566666666644433 55556655442322  22344


Q ss_pred             HHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          126 HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..+......+  .++|+|+||+|....
T Consensus       205 ~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          205 SMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHhhcC--CceEEEecchhhcCc
Confidence            5555543222  279999999998865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.26  E-value=7.1e-12  Score=102.67  Aligned_cols=182  Identities=14%  Similarity=0.022  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHh-----CCCCccccCCCCCc--------------ceeeEEE-EE------
Q 023779           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT------   63 (277)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKStlin~l~-----~~~~~~~~~~~~~~--------------t~~~~~~-~~------   63 (277)
                      .-++..-.....++++|..||||||+++.|.     |..+.....-+...              +...... ..      
T Consensus         5 ~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (262)
T 1yrb_A            5 HHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAI   84 (262)
T ss_dssp             CCCCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHH
T ss_pred             cccccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcE
Confidence            3344555567899999999999999999998     65432111000000              0000000 00      


Q ss_pred             -------------------eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-
Q 023779           64 -------------------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-  123 (277)
Q Consensus        64 -------------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-  123 (277)
                                         ....+..+.||||||..+..    . ...+...+...+.. +++++++|+....+..+.. 
T Consensus        85 ~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~  158 (262)
T 1yrb_A           85 VESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCF  158 (262)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHH
T ss_pred             EecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHH
Confidence                               00012468999999965310    0 00111112223355 8999999987333443322 


Q ss_pred             HHHHH-HHHhCcCccCcEEEEEeCCCCCCcccccH---HHHhcccCCchHHHH---------------------HhhcCC
Q 023779          124 AVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHECPKPLKEI---------------------LQLCDN  178 (277)
Q Consensus       124 ~~~~l-~~~~~~~~~~~~ivv~nk~D~~~~~~~~l---~~~l~~~~~~~~~~~---------------------~~~~~~  178 (277)
                      ..... .......  .|+++|+||+|....  ..+   .+++..     +..+                     +...+.
T Consensus       159 ~~~~~~~~~~~~~--~p~~iv~NK~D~~~~--~~~~~~~~~l~~-----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  229 (262)
T 1yrb_A          159 VRFFALLIDLRLG--ATTIPALNKVDLLSE--EEKERHRKYFED-----IDYLTARLKLDPSMQGLMAYKMCSMMTEVLP  229 (262)
T ss_dssp             HHHHHHHHHHHHT--SCEEEEECCGGGCCH--HHHHHHHHHHHC-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcccC--CCeEEEEeccccccc--ccHHHHHHHHhC-----hHHHHHHHhccccccchhHhHHHHHHHHhcC
Confidence            11111 1111111  389999999997654  222   233222     1111                     122221


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .    ....+.|++.+.++++|++.|.+.++.
T Consensus       230 ~----~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          230 P----VRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             C----CCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             c----ccceEEEecCcccHHHHHHHHHHHhcc
Confidence            1    022356788889999999999988765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.22  E-value=4.8e-11  Score=101.22  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCcCccCcEEEEEe
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ivv~n  145 (277)
                      .+..+.|+||||+...    ..   .+       ...+|++++++++...   .+...+ ..+.+       .+.++++|
T Consensus       146 ~~~~~iliDT~Gi~~~----~~---~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~-------~~~ivvlN  201 (337)
T 2qm8_A          146 AGFDVILVETVGVGQS----ET---AV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVN  201 (337)
T ss_dssp             TTCCEEEEEECSSSSC----HH---HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred             CCCCEEEEECCCCCcc----hh---hH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-------cccEEEEE
Confidence            5778999999998752    11   11       2467999999997621   111100 01111       15677889


Q ss_pred             CCCCCCcccccHHHHhcccCCchHHHHHhhcC-------CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      |+|..... .......+.     +...+....       ..++      ..|+..+.++++|++.|.....
T Consensus       202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl------~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVV------TISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            99965430 111111221     222222111       2222      2578888999999999988775

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.22  E-value=8.9e-13  Score=113.19  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ..+|+++|.+|+|||||+|+|++.....    ...+.. +.|.......    -+..+.++||||+.+.......+..+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP----LDEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE----SSSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE----ecCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            3689999999999999999999763211    111222 2332222221    122388999999987653333333332


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~  162 (277)
                      ...+. ....++..+|+++..+.+.......+..+.   +..  .|+++++||.|....  ..++...+
T Consensus       236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~  296 (368)
T 3h2y_A          236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADE  296 (368)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHH
T ss_pred             HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHH
Confidence            32221 235678899999884221111211122222   122  389999999998876  45544433

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.18  E-value=4.6e-13  Score=115.05  Aligned_cols=123  Identities=18%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ..+|+++|.+|+|||||+|+|++.     .....+. ..+.|.......    -+..+.++||||+.+.......+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            467999999999999999999976     2211111 123333332221    233478999999987643233222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ...+. ....+++++|+++..+.+.......+..+.   +..  .|+++++||.|....
T Consensus       237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR  289 (369)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred             HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence            22221 125689999999985221111211122222   222  389999999998865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.17  E-value=3.8e-10  Score=97.68  Aligned_cols=169  Identities=19%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc--ceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV--TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ...|+|+|++|+|||||+|+|+|...+..|......  ++...+. ........++++|+||++....   .+ .++...
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v-~q~~~~~~ltv~D~~g~~~~~~---~~-~~~L~~  143 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLPGIGSTNF---PP-DTYLEK  143 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE-EECSSCTTEEEEECCCGGGSSC---CH-HHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe-ccccccCCeeehHhhcccchHH---HH-HHHHHH
Confidence            358999999999999999999997766555332221  1111111 1111223689999999874321   11 222222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC-c------ccccHHHHhcccCCchH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-D------HEKTLEDFLGHECPKPL  169 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~-~------~~~~l~~~l~~~~~~~~  169 (277)
                      +.  ....+.+++ ++.. +.......+...+.. .+.    |+++|.|+.|.+- +      .......+++.     +
T Consensus       144 ~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l  209 (413)
T 1tq4_A          144 MK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MKK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----I  209 (413)
T ss_dssp             TT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TTC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----H
T ss_pred             cC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cCC----CeEEEEecCcccccCcccccCCHHHHHHHHHH-----H
Confidence            22  122345554 6665 444444455455544 233    8999999988641 0      00122223322     3


Q ss_pred             HHHH----hhcC---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          170 KEIL----QLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       170 ~~~~----~~~~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +++.    ...+   ...+.+....    ....+++.|.+.+...+++
T Consensus       210 ~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          210 RLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCcc
Confidence            3332    1222   3445544432    2235799999999988876

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.12  E-value=1.8e-10  Score=99.05  Aligned_cols=94  Identities=15%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTP   77 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtp   77 (277)
                      ....+.+|+|+|++|+|||||+|+|+|......... ..+|........ ...+                 ..+.+||||
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~-p~tTi~p~~G~v-~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p   93 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKV-AVPDERFDWLCEAYKPKSRVPAFLTVFDIA   93 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEE-EECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCC-Cceeecceeeee-eeCCcchhhhhhhcccccccCcceEEEecc
Confidence            334568999999999999999999998654122211 112222211111 1232                 357899999


Q ss_pred             CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      |+.......+.+...+...+    ..+|++++|+++.
T Consensus        94 Gl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~  126 (392)
T 1ni3_A           94 GLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF  126 (392)
T ss_dssp             GGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence            99865544343444444443    4679999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.09  E-value=1.6e-10  Score=92.03  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=82.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCc--ccc--CCCCCcce--------eeEEEEEe-----------------eeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAF--KAS--AGSSGVTK--------TCEMKTTV-----------------LKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~--~~~~~~t~--------~~~~~~~~-----------------~~~~   68 (277)
                      ..++|+++|++|+|||||++.|++....  ...  ....+.+.        ........                 ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            3478999999999999999999854210  000  00001000        00000000                 1234


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.+|||||....   ..           ......+.+++|+|+......    ...... ..+    .|+++|+||+|
T Consensus       109 ~d~iiidt~G~~~~---~~-----------~~~~~~~~~i~vvd~~~~~~~----~~~~~~-~~~----~~~iiv~NK~D  165 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PV-----------DFDLGENYRVVMVSVTEGDDV----VEKHPE-IFR----VADLIVINKVA  165 (221)
T ss_dssp             CSEEEEEEEEBSSG---GG-----------GCCCSCSEEEEEEEGGGCTTH----HHHCHH-HHH----TCSEEEEECGG
T ss_pred             CCEEEEeCCCCCCC---Cc-----------hhccccCcEEEEEeCCCcchh----hhhhhh-hhh----cCCEEEEeccc
Confidence            56889999985211   00           011245788999998733211    111111 122    28999999999


Q ss_pred             CCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          149 DLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ........+.....         .+...+  ..++      ..|+..+.++.+|++.|...+..
T Consensus       166 l~~~~~~~~~~~~~---------~~~~~~~~~~i~------~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          166 LAEAVGADVEKMKA---------DAKLINPRAKII------EMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             GHHHHTCCHHHHHH---------HHHHHCTTSEEE------ECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             CCcchhhHHHHHHH---------HHHHhCCCCeEE------EeecCCCCCHHHHHHHHHHHHHH
Confidence            65321112333222         222222  2222      45777889999999999887644

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.09  E-value=1.5e-10  Score=99.33  Aligned_cols=91  Identities=15%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-----------------CceEEEEeCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------GQVVNVIDTPGL   79 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtpG~   79 (277)
                      ....+|+|+|.+|+|||||+|+|++.... .. ....+|.......+. ..                 ...+.+|||||+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-~~-~~p~tTi~p~~g~v~-v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-AE-NFPFCTIDPNESRVP-VPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcc-cc-CCCccccCceeEEEE-ECCccceeeccccCcccccccccEEEECCCc
Confidence            35578999999999999999999987641 11 111222222111111 12                 235899999998


Q ss_pred             CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .........+...+..    .++.+|++++|+|+.
T Consensus        97 ~~~as~~~glg~~~l~----~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           97 VKGAHNGQGLGNAFLS----HISACDGIFHLTRAF  127 (396)
T ss_dssp             ----------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred             ccccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence            8643222222222333    345679999999987

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.08  E-value=3.9e-10  Score=101.65  Aligned_cols=107  Identities=20%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEE--EeeeCCceEEEEeCCCCCCCCC-CchHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSA-GSEFVGKEI   93 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~--~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~   93 (277)
                      +..+|+|+|.+|+|||||+|+|+|... +..+....+.|.......  .....+..+.|+||||+.+... ....-...+
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f  116 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  116 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence            447899999999999999999999764 222222222332222111  1113567899999999987543 221111111


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN  130 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~  130 (277)
                      .-+...+    +  ++|+++...++..+...+..+.+
T Consensus       117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence            1111112    2  45566566788887766665544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.06  E-value=1.7e-09  Score=95.87  Aligned_cols=123  Identities=14%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh------CCCCccccCCC-CCcc--------e--eeEEEEE--------------e-
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-SGVT--------K--TCEMKTT--------------V-   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~-~~~t--------~--~~~~~~~--------------~-   64 (277)
                      .+..+|+++|++||||||+++.|+      |..+.-...-. .+..        .  ...++..              . 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345799999999999999999998      65432111000 0000        0  0111110              0 


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EE
Q 023779           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IV  142 (277)
Q Consensus        65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-iv  142 (277)
                       .+.+..+.||||||....   +..+..++......  ..+|.+++|+|+.....  .......+.+.      .|+ .|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv  245 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV  245 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred             HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence             125678999999998752   23333444333321  26799999999984433  22333333331      164 89


Q ss_pred             EEeCCCCCCc
Q 023779          143 VFTGGDDLED  152 (277)
Q Consensus       143 v~nk~D~~~~  152 (277)
                      |+||+|....
T Consensus       246 VlNK~D~~~~  255 (504)
T 2j37_W          246 IVTKLDGHAK  255 (504)
T ss_dssp             EEECTTSCCC
T ss_pred             EEeCCccccc
Confidence            9999997744

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.99  E-value=9.9e-10  Score=90.76  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=42.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~   88 (277)
                      ...+|+++|.+|+|||||+|+|+|......+.. .+.|......    ..+..+.++||||+......+..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV----KVGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE----EeCCCEEEEECcCcCCCCCCCHH
Confidence            457999999999999999999999875444322 2233333221    12457899999999876654443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.90  E-value=6.1e-08  Score=82.70  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~-  135 (277)
                      .++..+.+|||+|..           .+......++.+++++|+|+|++ .+.         ..-.....++...+... 
T Consensus       198 ~~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~~~~  265 (362)
T 1zcb_A          198 IKNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVNNRV  265 (362)
T ss_dssp             ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             eCCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhcchh
Confidence            456779999999943           33444456789999999999998 421         11223334444443321 


Q ss_pred             -ccCcEEEEEeCCCCC
Q 023779          136 -VFDYMIVVFTGGDDL  150 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~  150 (277)
                       ...|++|++||.|..
T Consensus       266 ~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          266 FSNVSIILFLNKTDLL  281 (362)
T ss_dssp             GTTSEEEEEEECHHHH
T ss_pred             hCCCCEEEEEEChhhh
Confidence             124999999999965

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.87  E-value=1.3e-08  Score=88.64  Aligned_cols=123  Identities=16%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCCCcccc--CCCCC---------cceeeEEEEEe----------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKAS--AGSSG---------VTKTCEMKTTV----------------   64 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~--~~~~~---------~t~~~~~~~~~----------------   64 (277)
                      ++..|+++|++|+||||++..|.      |..+....  ....+         .......+...                
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999987      33321110  00000         00000011000                


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                      ...+..+.||||||...   .+..+..++......  ..+|.+++|+|+..+  .........+.+..     ....||+
T Consensus       179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence            01246789999999765   234444455444332  257999999999732  22223333333321     2577999


Q ss_pred             eCCCCCCc
Q 023779          145 TGGDDLED  152 (277)
Q Consensus       145 nk~D~~~~  152 (277)
                      ||+|....
T Consensus       247 TKlD~~~~  254 (443)
T 3dm5_A          247 TKLDGSAK  254 (443)
T ss_dssp             ECCSSCSS
T ss_pred             ECCCCccc
Confidence            99997655

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.87  E-value=4e-08  Score=83.54  Aligned_cols=129  Identities=12%  Similarity=0.124  Sum_probs=72.0

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~-  135 (277)
                      .++..+.+|||+|..           .+......++.+++++++|+|++ .+.         ..-.....++..++... 
T Consensus       190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls-~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~  257 (353)
T 1cip_A          190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALS-DYDLVLAEDEEMNRMHESMKLFDSICNNKW  257 (353)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGG-GGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECc-cccccccccchhhhHHHHHHHHHHHHcCcc
Confidence            456789999999943           23344456789999999999998 321         11223444555544321 


Q ss_pred             -ccCcEEEEEeCCCCCCcc--cccHHHHhccc----CCchHHHHHh----hc-----CCeEEEEeCCCcccccChhHHHH
Q 023779          136 -VFDYMIVVFTGGDDLEDH--EKTLEDFLGHE----CPKPLKEILQ----LC-----DNRCVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~----~~~~~~~~~~----~~-----~~~~~~~~~~~~~s~~~~~~~~~  199 (277)
                       ...|++|++||.|.....  ...+..+....    .......++.    ..     ...+..+    .+||..+.++..
T Consensus       258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~  333 (353)
T 1cip_A          258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQF  333 (353)
T ss_dssp             GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHH
T ss_pred             ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHH
Confidence             124999999999964220  00011110000    0001222222    11     1222222    457888899999


Q ss_pred             HHHHHHHHHhh
Q 023779          200 LLSLVNSVIVQ  210 (277)
Q Consensus       200 L~~~i~~~~~~  210 (277)
                      +++.+...+..
T Consensus       334 vF~~v~~~i~~  344 (353)
T 1cip_A          334 VFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877644

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.81  E-value=5.8e-08  Score=81.77  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC---------CHHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF---------SQEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~~~~~l~~~~~~~-  135 (277)
                      ..+..+.+|||+|-           +.+......++++++++++|+|++ .+         ...-...+.++...+... 
T Consensus       158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS-~ydq~l~e~~~~nr~~es~~~~~~i~~~~~  225 (340)
T 4fid_A          158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLA-EYDMKLYEDGNTSRLTESIAVFKDIMTNEF  225 (340)
T ss_dssp             SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGG-GTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred             eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECC-ccccccccccccchHHHHHHHHHHHhhhhc
Confidence            45678999999992           345566667899999999999997 11         111123334444443211 


Q ss_pred             -ccCcEEEEEeCCCCCC
Q 023779          136 -VFDYMIVVFTGGDDLE  151 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~~  151 (277)
                       ...|++|++||+|...
T Consensus       226 ~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          226 LKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             GTTSEEEEEEECHHHHH
T ss_pred             cCCCeEEEEEECchhhh
Confidence             1249999999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.78  E-value=4.8e-09  Score=85.70  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=39.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .+|+++|.+|+|||||+|+|+|......+.. .+.|......    ..+..+.+|||||+.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF----SLENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE----EeCCCEEEEECCCcccCcC
Confidence            5899999999999999999998776444322 2333332211    2245788999999998655

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.76  E-value=1.3e-08  Score=81.19  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ...+|+|+|++|||||||++.|+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999854

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.76  E-value=3.5e-07  Score=76.74  Aligned_cols=129  Identities=14%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-------C--CCCHHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------N--RFSQEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-------~--~~~~~~~~~~~~l~~~~~~~-  135 (277)
                      ..+..+.+|||.|-           +.+......++++++++++|+|++       .  .... -...+.++..++... 
T Consensus       164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr-~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENR-MEESKALFRTIITYPW  231 (327)
T ss_dssp             ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBH-HHHHHHHHHHHHTSGG
T ss_pred             eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhH-HHHHHHHHHHHhhhhc
Confidence            46678999999992           345555567889999999999775       1  1111 123444555554321 


Q ss_pred             -ccCcEEEEEeCCCCCCcc--cccHHHHhcccCC--ch---HHHH-----Hhh--cC-CeEEEEeCCCcccccChhHHHH
Q 023779          136 -VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP--KP---LKEI-----LQL--CD-NRCVLFDNKTKDEAKGTEQVRQ  199 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~~~--~~---~~~~-----~~~--~~-~~~~~~~~~~~~s~~~~~~~~~  199 (277)
                       ...|++|++||+|.....  ...+..+......  ..   ...+     ...  .. ..++.+    .++|....++..
T Consensus       232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~nV~~  307 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRF  307 (327)
T ss_dssp             GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHHHHHH
T ss_pred             cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCHHHHH
Confidence             124999999999965320  0112222111000  00   1111     111  11 222222    357778899999


Q ss_pred             HHHHHHHHHhh
Q 023779          200 LLSLVNSVIVQ  210 (277)
Q Consensus       200 L~~~i~~~~~~  210 (277)
                      ++..+.+.+-.
T Consensus       308 vF~~v~~~Il~  318 (327)
T 3ohm_A          308 VFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.70  E-value=7.8e-08  Score=83.65  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCCCcccc--CCCCC---------cceeeEEEE--------------Eee-
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKAS--AGSSG---------VTKTCEMKT--------------TVL-   65 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~--~~~~~---------~t~~~~~~~--------------~~~-   65 (277)
                      ++..|+++|++|+||||++..|.      |..+.-..  ....+         .......+.              ... 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45889999999999999999987      33221100  00000         000000000              000 


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                       ..+..+.|+||||..... .+.....++.......  .++.+++|+|+...  .........+.+..+     +..||+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence             125678899999975411 1233444555544333  46899999999722  222233344443322     688999


Q ss_pred             eCCCCCCc
Q 023779          145 TGGDDLED  152 (277)
Q Consensus       145 nk~D~~~~  152 (277)
                      ||+|....
T Consensus       246 TKlD~~a~  253 (433)
T 3kl4_A          246 TKMDGTAK  253 (433)
T ss_dssp             ECGGGCSC
T ss_pred             eccccccc
Confidence            99997644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.63  E-value=5.3e-08  Score=85.01  Aligned_cols=122  Identities=17%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC------Ccc--ccCC--------------------CCC-cceee-EE--EEEeee
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK------AFK--ASAG--------------------SSG-VTKTC-EM--KTTVLK   66 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~------~~~--~~~~--------------------~~~-~t~~~-~~--~~~~~~   66 (277)
                      ...|+++|++|+||||+++.|.+..      +.-  ....                    ... .+... ..  ......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999987521      100  0000                    000 00000 00  001112


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCcc-CcEEEEEe
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT  145 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv~n  145 (277)
                      .+..+.||||||....   +..+..++...  .....+|.+++|+|+..+.  .   .+..+.. +... . ....+|+|
T Consensus       179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVln  246 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVT  246 (432)
T ss_dssp             SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred             hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEe
Confidence            4567899999998752   23333333221  1234689999999987332  1   2222322 2211 1 24889999


Q ss_pred             CCCCCCc
Q 023779          146 GGDDLED  152 (277)
Q Consensus       146 k~D~~~~  152 (277)
                      |+|....
T Consensus       247 K~D~~~~  253 (432)
T 2v3c_C          247 KLDGSAK  253 (432)
T ss_dssp             CSSSCST
T ss_pred             CCCCccc
Confidence            9997643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.61  E-value=2.7e-07  Score=78.44  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=44.4

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC---------CCCHHHHHHHHHHHHHhCcC--c
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN--V  136 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~---------~~~~~~~~~~~~l~~~~~~~--~  136 (277)
                      ...+.+|||+|-..           +......++++++++++|+|++.         .... -.....++..++...  .
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s-~~~~~~~~~~i~~~~~~~  249 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR-MMETKELFDWVLKQPCFE  249 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH-HHHHHHHHHHHHTCGGGS
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH-HHHHHHHHHHHHhccccC
Confidence            35689999999542           33444567899999999999860         1111 123334444443211  2


Q ss_pred             cCcEEEEEeCCCCC
Q 023779          137 FDYMIVVFTGGDDL  150 (277)
Q Consensus       137 ~~~~ivv~nk~D~~  150 (277)
                      ..|++||+||+|..
T Consensus       250 ~~piiLvgNK~DL~  263 (354)
T 2xtz_A          250 KTSFMLFLNKFDIF  263 (354)
T ss_dssp             SCEEEEEEECHHHH
T ss_pred             CCeEEEEEECcchh
Confidence            24999999999964

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.60  E-value=4.2e-07  Score=75.75  Aligned_cols=127  Identities=14%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC------C--CCCc---------ceeeEEEEEe----------------
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------G--SSGV---------TKTCEMKTTV----------------   64 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~------~--~~~~---------t~~~~~~~~~----------------   64 (277)
                      ++..|+|+|++|||||||++.|.|...+..+.      .  ....         .....+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998543222210      0  0000         0001111100                


Q ss_pred             eeCCceEEEEeCCCCCCCCCC-chHHHHHHHHHH-hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEE
Q 023779           65 LKDGQVVNVIDTPGLFDLSAG-SEFVGKEIVKCL-GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (277)
Q Consensus        65 ~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (277)
                      ...+..+.++||+|....... ..++.+ ....+ ......|+.+++++|+..+.  .....+..+.+..+     ..+|
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~-~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i  252 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKK-VKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV  252 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHH-HHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHH-HHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence            011335679999998653210 011221 22222 22345688888899976332  22223333333233     4788


Q ss_pred             EEeCCCCCCc
Q 023779          143 VFTGGDDLED  152 (277)
Q Consensus       143 v~nk~D~~~~  152 (277)
                      ++||.|....
T Consensus       253 ivTh~d~~a~  262 (304)
T 1rj9_A          253 IVTKLDGTAK  262 (304)
T ss_dssp             EEECTTSSCC
T ss_pred             EEECCccccc
Confidence            9999986543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.58  E-value=3.3e-07  Score=80.56  Aligned_cols=126  Identities=14%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--Ccce---------------eeEEEEEe---------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--GVTK---------------TCEMKTTV---------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~--~~t~---------------~~~~~~~~---------------   64 (277)
                      ..+..|+|+|++|||||||++.|.|......|....  ..+.               ...+....               
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            456799999999999999999998643222221000  0000               01111100               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---Hhhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC---LGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (277)
Q Consensus        65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (277)
                       ...+..+.|+||+|....   ...+..++.+.   +... ...++-+++|+|+..+  ......+..+.+..+     .
T Consensus       371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i  440 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L  440 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred             HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence             012356889999998642   22333333322   2222 2346788999997622  222233334443333     3


Q ss_pred             EEEEEeCCCCCCc
Q 023779          140 MIVVFTGGDDLED  152 (277)
Q Consensus       140 ~ivv~nk~D~~~~  152 (277)
                      ..+|+||+|....
T Consensus       441 tgvIlTKLD~tak  453 (503)
T 2yhs_A          441 TGITLTKLDGTAK  453 (503)
T ss_dssp             SEEEEECGGGCSC
T ss_pred             CEEEEEcCCCccc
Confidence            6789999996533

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.53  E-value=1.6e-07  Score=79.11  Aligned_cols=124  Identities=14%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------CCCc-------c--eeeEEEEEe---------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------SSGV-------T--KTCEMKTTV---------------   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--------~~~~-------t--~~~~~~~~~---------------   64 (277)
                      .++..|+|+|++|+||||+++.|.|...+..+..        ....       .  ....+....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            4568999999999999999999986432222100        0000       0  000011000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (277)
Q Consensus        65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (277)
                       ...+..+.++||+|.....   ..+..++.......  .+|-.++++|+..+  ..-...+..+.+..+     ..+|+
T Consensus       207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred             HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence             0113457789999986532   22333443332222  35888999998732  111222233332222     46899


Q ss_pred             EeCCCCCCc
Q 023779          144 FTGGDDLED  152 (277)
Q Consensus       144 ~nk~D~~~~  152 (277)
                      +||+|....
T Consensus       275 lTKlD~~a~  283 (328)
T 3e70_C          275 LTKLDADAR  283 (328)
T ss_dssp             EECGGGCSC
T ss_pred             EeCcCCccc
Confidence            999996543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.52  E-value=4.7e-07  Score=79.01  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +...|+|+|++++|||||+|.|+|.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4578999999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.41  E-value=2.7e-06  Score=70.82  Aligned_cols=126  Identities=16%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCc-------c----eeeEEEEEee--------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGV-------T----KTCEMKTTVL--------------   65 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t----~~~~~~~~~~--------------   65 (277)
                      .++..++++|++||||||+++.|+|...+..|..      ....       .    ....+.....              
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~  177 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  177 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence            4567999999999999999999986543222210      0000       0    0111111100              


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCchHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccC
Q 023779           66 ---KDGQVVNVIDTPGLFDLSAGSEFVGKEI---VKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD  138 (277)
Q Consensus        66 ---~~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (277)
                         ..+....++||.|.....   .....++   ...+. .....++-+++++|....+....  .+..+.+..+     
T Consensus       178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----  247 (302)
T 3b9q_A          178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----  247 (302)
T ss_dssp             HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred             HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence               012346789999986532   2222222   22222 23456787788888553433322  2233333222     


Q ss_pred             cEEEEEeCCCCCCc
Q 023779          139 YMIVVFTGGDDLED  152 (277)
Q Consensus       139 ~~ivv~nk~D~~~~  152 (277)
                      ..+|++||.|....
T Consensus       248 ~t~iiiThlD~~~~  261 (302)
T 3b9q_A          248 ITGLILTKLDGSAR  261 (302)
T ss_dssp             CCEEEEECCSSCSC
T ss_pred             CCEEEEeCCCCCCc
Confidence            46788999986533

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.41  E-value=8.3e-08  Score=79.85  Aligned_cols=60  Identities=30%  Similarity=0.363  Sum_probs=34.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      .+..++|+|++|||||||+|+|+|...+.+|....      ..|......  . ..  ...++||||+...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSSL  237 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCcccc
Confidence            45789999999999999999999877655553321      122211111  1 11  3579999998764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.41  E-value=2.6e-06  Score=72.41  Aligned_cols=129  Identities=14%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCc-------c----eeeEEEEEee--------------
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGV-------T----KTCEMKTTVL--------------   65 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t----~~~~~~~~~~--------------   65 (277)
                      .++..|+|+|++|||||||++.|+|...+..|..      ....       .    ....+.....              
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~  234 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  234 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence            4567999999999999999999986433222210      0000       0    0111111100              


Q ss_pred             ---eCCceEEEEeCCCCCCCCCC-chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE
Q 023779           66 ---KDGQVVNVIDTPGLFDLSAG-SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        66 ---~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                         ..+....++||.|+...... ..++.+............++-+++|+|....+....  .+..+.+..+     ..+
T Consensus       235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~t~  307 (359)
T 2og2_A          235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----ITG  307 (359)
T ss_dssp             HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----CCE
T ss_pred             HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----CeE
Confidence               01234679999998753210 011221111122223466888888888553333322  2233333222     478


Q ss_pred             EEEeCCCCCCc
Q 023779          142 VVFTGGDDLED  152 (277)
Q Consensus       142 vv~nk~D~~~~  152 (277)
                      |++||.|....
T Consensus       308 iiiThlD~~~~  318 (359)
T 2og2_A          308 LILTKLDGSAR  318 (359)
T ss_dssp             EEEESCTTCSC
T ss_pred             EEEecCccccc
Confidence            89999986644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.34  E-value=7.2e-06  Score=71.58  Aligned_cols=123  Identities=16%  Similarity=0.111  Sum_probs=66.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh-------CCCCcccc--CCCCCc-------c--eeeEEEE--------------Ee
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKAS--AGSSGV-------T--KTCEMKT--------------TV   64 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~-------~~~~~~~~--~~~~~~-------t--~~~~~~~--------------~~   64 (277)
                      .+...|+++|++|+||||++..|.       |..+....  ......       .  ....+..              ..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            345789999999999999999987       54432111  100000       0  0000000              00


Q ss_pred             --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EE
Q 023779           65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MI  141 (277)
Q Consensus        65 --~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i  141 (277)
                        ...+..+.||||||....   +..+..++.....  ...++.+++|+|+....  ........+..    ..  + .-
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~----~l--~i~g  244 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNE----AL--PLTG  244 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHH----HS--CCCC
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhc----cC--CCeE
Confidence              014567999999997652   2233333333322  23578999999987332  11222222222    11  3 45


Q ss_pred             EEEeCCCCCCc
Q 023779          142 VVFTGGDDLED  152 (277)
Q Consensus       142 vv~nk~D~~~~  152 (277)
                      ||+||+|....
T Consensus       245 vVlnK~D~~~~  255 (433)
T 2xxa_A          245 VVLTKVDGDAR  255 (433)
T ss_dssp             EEEECTTSSSC
T ss_pred             EEEecCCCCcc
Confidence            79999997544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.31  E-value=2.3e-06  Score=71.27  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .++..|+++|++|+||||++..|.+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Confidence            3457899999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.30  E-value=5.4e-07  Score=74.80  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-------CCCCCccee-----------eEEEE----------EeeeCCc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGSSGVTKT-----------CEMKT----------TVLKDGQ   69 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~   69 (277)
                      ++..|+++|++|+||||++..|.+......|       ......+..           .....          .....+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            4579999999999999999998643211111       000000000           00000          0012345


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~  149 (277)
                      .+.|+||||....   ......++...+.  ...++.+++|++++..  ..+   +..+...+..  ....-+|+||+|.
T Consensus       184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~  251 (296)
T 2px0_A          184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE  251 (296)
T ss_dssp             SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred             CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence            7899999998752   2222223332221  1246778899887622  112   2223333331  2245677899996


Q ss_pred             CCc
Q 023779          150 LED  152 (277)
Q Consensus       150 ~~~  152 (277)
                      ...
T Consensus       252 ~~~  254 (296)
T 2px0_A          252 TTS  254 (296)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.29  E-value=4.4e-06  Score=69.33  Aligned_cols=124  Identities=14%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCc-ce----------eeEEEE--------------Eee--
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-TK----------TCEMKT--------------TVL--   65 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~~~--   65 (277)
                      ...|+++|++|+||||++..|.      |..+.-.+...... ..          ......              ...  
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999987      32221111100000 00          000000              000  


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      ..+..+.||||||..... ....+..++......  ..+|.+++|+++...  ...   +..+... .... ....+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~---~~~~~~~-~~~~-~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKA---YDLASKF-NQAS-KIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGH---HHHHHHH-HHTC-TTEEEEEE
T ss_pred             hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHH---HHHHHHH-HhhC-CCCEEEEe
Confidence            145679999999977510 122233333222111  246899999998621  222   2333322 2111 13778999


Q ss_pred             CCCCCCc
Q 023779          146 GGDDLED  152 (277)
Q Consensus       146 k~D~~~~  152 (277)
                      |+|....
T Consensus       248 k~D~~~~  254 (297)
T 1j8m_F          248 KMDGTAK  254 (297)
T ss_dssp             CGGGCTT
T ss_pred             CCCCCcc
Confidence            9996543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.25  E-value=2e-06  Score=71.72  Aligned_cols=59  Identities=27%  Similarity=0.256  Sum_probs=37.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C-cceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      ...++++|++|+|||||+|+|+ ...+.+|....    + .++..... .. . .....++||||+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~-~~-~-~~~g~v~d~pg~~~  228 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL-IP-F-GKGSFVGDTPGFSK  228 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE-EE-E-TTTEEEESSCCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE-EE-c-CCCcEEEECcCcCc
Confidence            4689999999999999999999 76655553332    1 12221111 11 1 12457999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.18  E-value=1.4e-06  Score=73.87  Aligned_cols=30  Identities=30%  Similarity=0.504  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC-cccc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS   48 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~   48 (277)
                      +..++|+|++|+|||||+|+|+|... +.+|
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence            46899999999999999999999876 5555

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=1.7e-06  Score=72.00  Aligned_cols=60  Identities=30%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~   82 (277)
                      ...++++|++|+|||||+|+|+|...+.+|....    +  .|......  . . .....++||||+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~-~-~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--K-F-DFGGYVVDTPGFANL  234 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--E-C-TTSCEEESSCSSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--E-c-CCCCEEEECcCCCcc
Confidence            4689999999999999999999987766653322    1  11111111  1 1 233579999997653

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.13  E-value=1.8e-05  Score=68.88  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh-------CC----------CCccccCCCCCcceeeEEEE----EeeeCC--ceEEE
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL-------GR----------KAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNV   73 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~-------~~----------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l   73 (277)
                      .+...|+|+|++++|||+|+|.|+       |.          ..|..+.+..+.|.-+-...    .....+  ..+.|
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            345788999999999999999775       21          23433333333333322111    111123  35899


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023779           74 IDTPGLFDLSAGSEFVGKEIVKC-LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN  130 (277)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~  130 (277)
                      +||.|+++....... ...+... +..+    +++||=..  ..+...+...+..+.+
T Consensus       145 lDTEG~~d~~~~~~~-d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          145 MDTQGTFDSQSTLRD-SATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EEECCBTCTTCCHHH-HHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred             EeccCCCCcccCccc-cHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence            999999987654221 1222211 1122    55554443  3566666666655544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.13  E-value=2.1e-05  Score=65.98  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+...|+++|++|+||||++..|.+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.10  E-value=6.8e-06  Score=71.36  Aligned_cols=123  Identities=17%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCCCc-c----------eeeEEEEE--------------ee-
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSGV-T----------KTCEMKTT--------------VL-   65 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~------~~~~~~~~-t----------~~~~~~~~--------------~~-   65 (277)
                      ++..|+++|++|+||||++..|.+.....      .+...... .          ....+...              .. 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999886422110      00000000 0          00001100              00 


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                       ..+..+.||||||....   +..+..++.......  .+|.+++|+|+...  .........+....     ...-||+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence             13456899999997653   233334443333222  56888999998722  11122222222211     1366889


Q ss_pred             eCCCCCCc
Q 023779          145 TGGDDLED  152 (277)
Q Consensus       145 nk~D~~~~  152 (277)
                      ||+|....
T Consensus       245 TKlD~~~~  252 (425)
T 2ffh_A          245 TKLDGDAR  252 (425)
T ss_dssp             ESGGGCSS
T ss_pred             eCcCCccc
Confidence            99996543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.97  E-value=1.1e-05  Score=64.26  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            4578999999999999999999997765544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.93  E-value=6e-06  Score=66.17  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            4578999999999999999999998765555

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.91  E-value=2.7e-05  Score=64.52  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc------CCCCCcce-----------eeEEEE--------------Eee-
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTK-----------TCEMKT--------------TVL-   65 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~~~t~-----------~~~~~~--------------~~~-   65 (277)
                      .+..|+++|++|+||||++..|.+......+      ........           ......              ... 
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            5578999999999999999988643211100      00000000           000010              000 


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (277)
Q Consensus        66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (277)
                       ..+..+.|+||||....   +.....++.......  .++.+++|+++. . ...   .+..+... ... ....-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~-~~~---~~~~~~~~-~~~-~~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T-GQE---ALSVARAF-DEK-VGVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G-THH---HHHHHHHH-HHH-TCCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-C-cHH---HHHHHHHH-hhc-CCCCEEEE
Confidence             13457899999986642   333344444443322  468888999976 2 122   22233222 111 11356899


Q ss_pred             eCCCCCCc
Q 023779          145 TGGDDLED  152 (277)
Q Consensus       145 nk~D~~~~  152 (277)
                      ||+|....
T Consensus       245 nk~d~~~~  252 (295)
T 1ls1_A          245 TKLDGDAR  252 (295)
T ss_dssp             ECGGGCSS
T ss_pred             ECCCCCcc
Confidence            99996543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.90  E-value=1.4e-05  Score=64.00  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.89  E-value=7.2e-06  Score=65.19  Aligned_cols=31  Identities=23%  Similarity=0.157  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4468999999999999999999998765554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.87  E-value=1.1e-05  Score=64.92  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+..++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            35578999999999999999999998765555

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.86  E-value=9.6e-06  Score=66.07  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765555

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.85  E-value=1e-05  Score=65.89  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+..|
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            4578999999999999999999998765554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.85  E-value=1.1e-05  Score=65.79  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765554

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.84  E-value=1.1e-05  Score=65.48  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4578999999999999999999998765555

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.84  E-value=9.1e-06  Score=64.07  Aligned_cols=31  Identities=19%  Similarity=0.097  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4467999999999999999999998765554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.83  E-value=1e-05  Score=65.70  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998765555

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.83  E-value=8.9e-05  Score=63.83  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC--C-------CCHHHHHHHHHHHHHhCcC-
Q 023779           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--R-------FSQEEETAVHRLPNLFGKN-  135 (277)
Q Consensus        66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~-------~~~~~~~~~~~l~~~~~~~-  135 (277)
                      .++..+.+|||+|-.           .+......++.+++++++|+|++.  .       ... -.....++..+.... 
T Consensus       214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRW  281 (402)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTT
T ss_pred             cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhccc
Confidence            467789999999943           233444567899999999999983  0       111 123444555544321 


Q ss_pred             -ccCcEEEEEeCCCCC
Q 023779          136 -VFDYMIVVFTGGDDL  150 (277)
Q Consensus       136 -~~~~~ivv~nk~D~~  150 (277)
                       ...|++||+||+|..
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence             224899999999964

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.83  E-value=1e-05  Score=66.25  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|||||||++.|+|...+.+|
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            4578999999999999999999997765554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.82  E-value=1.2e-05  Score=64.70  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998765555

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.81  E-value=1.2e-05  Score=64.48  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..++|+|++|+|||||++.|+|...+.+|
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            57999999999999999999998765554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.81  E-value=1.2e-05  Score=64.86  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.79  E-value=2.6e-05  Score=64.37  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.79  E-value=1.4e-05  Score=65.42  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+..++|+|++|+|||||++.|+|...+..|
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            35578999999999999999999998765554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.79  E-value=1.4e-05  Score=65.22  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998765555

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.79  E-value=1.4e-05  Score=65.71  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence            4568999999999999999999998765555

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.77  E-value=1.5e-05  Score=64.52  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   60 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQG   60 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4468999999999999999999998765554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.76  E-value=1.7e-05  Score=59.33  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|.. +..|
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence            45689999999999999999999876 5455

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.75  E-value=1.2e-05  Score=61.61  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +++|+|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.74  E-value=1e-05  Score=63.08  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +..++|+|++|+|||||++.|+|.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            367999999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.73  E-value=1.4e-05  Score=62.61  Aligned_cols=27  Identities=33%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ..+..++|+|++|||||||++.|+|..
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            455789999999999999999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.73  E-value=2e-05  Score=63.63  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFK   46 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~   46 (277)
                      .+..++|+|++|+|||||++.|+|...+.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            44689999999999999999999977654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.70  E-value=1.7e-05  Score=66.01  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++|+|++|+|||||++.|+|...+..|
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            35578999999999999999999998765554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.68  E-value=1.9e-05  Score=60.40  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..++|+|++|||||||++.|.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.67  E-value=2.3e-05  Score=63.39  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+..++|+|++|+|||||++.|+|.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999996

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.66  E-value=2.8e-05  Score=65.95  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998776655

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.65  E-value=3.1e-05  Score=65.78  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+..++|+|++|||||||++.|+|...+.+|
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            34578999999999999999999998765555

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.65  E-value=3e-05  Score=63.14  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +-.++|+|++|+|||||++.|+|.. +.+|
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            4689999999999999999999987 6655

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.64  E-value=2.4e-05  Score=60.94  Aligned_cols=24  Identities=13%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +..|+|+|++|||||||++.|+|.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            467999999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.64  E-value=5.6e-05  Score=62.85  Aligned_cols=102  Identities=13%  Similarity=0.082  Sum_probs=58.6

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      ..+.+|||  ...           +......++.++|++++|+|++.+. +... ..++..+..   .+  .|++||+||
T Consensus        63 ~~~~iwD~--qer-----------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHR-----------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCC-----------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECC
T ss_pred             CeEEEEEE--ccc-----------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeH
Confidence            37899999  221           1111224678999999999998443 3332 233333332   12  389999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~  205 (277)
                      +|....  ..+++         ..++.....  ..++      .+||+.+.++++++..+.
T Consensus       125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~------~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          125 MDLYDE--DDLRK---------VRELEEIYSGLYPIV------KTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             GGGCCH--HHHHH---------HHHHHHHHTTTSCEE------ECCTTTCTTHHHHHHHHS
T ss_pred             HHcCCc--hhHHH---------HHHHHHHHhhhCcEE------EEECCCCcCHHHHHHHhc
Confidence            997654  22211         222222222  2222      467777888888777553

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.64  E-value=2.4e-05  Score=61.93  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      +.+..++|+|++|||||||++.|+|...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4567899999999999999999998654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.63  E-value=2e-05  Score=62.31  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++..++|+|++|+|||||++.|+|..
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999999854

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.63  E-value=3.4e-05  Score=62.69  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      ++..++|+|++|+|||||++.|+|...
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            557899999999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.62  E-value=3.5e-05  Score=62.90  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+..++|+|++|+|||||++.|+|.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999997

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.61  E-value=3.8e-05  Score=65.59  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence            4578999999999999999999998776555

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.61  E-value=3.9e-05  Score=65.20  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence            4578999999999999999999998765555

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.61  E-value=3.9e-05  Score=65.21  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence            4578999999999999999999998765555

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.60  E-value=4.2e-05  Score=58.85  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++..|+|+|++||||||+++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999976

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.59  E-value=4e-05  Score=65.00  Aligned_cols=31  Identities=29%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            4578999999999999999999998765555

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.58  E-value=3e-05  Score=60.77  Aligned_cols=27  Identities=33%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .++..|+|+|++|+|||||++.|.|..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.58  E-value=4.6e-05  Score=65.06  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            4578999999999999999999998766555

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.58  E-value=1.2e-05  Score=63.02  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~   50 (277)
                      +-.++|+|++|+|||||++.|+|. .+.+|..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            457999999999999999999998 6666643

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.58  E-value=0.00099  Score=51.60  Aligned_cols=69  Identities=6%  Similarity=-0.014  Sum_probs=42.3

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      ...+.|+|||+...         ......+..    +|.+++++..+ ..+..-...++.+..........++.+|+|++
T Consensus        75 ~yD~viiD~~~~~~---------~~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS---------VITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS---------HHHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC---------HHHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45789999998553         122333333    38899999887 44433355666665542112223678999999


Q ss_pred             CCC
Q 023779          148 DDL  150 (277)
Q Consensus       148 D~~  150 (277)
                      |..
T Consensus       141 ~~~  143 (206)
T 4dzz_A          141 IEM  143 (206)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            843

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.57  E-value=3.4e-05  Score=62.44  Aligned_cols=31  Identities=13%  Similarity=0.263  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh---CCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~---~~~~~~~~   48 (277)
                      ....|+|+|++||||||+++.|.   |...+.+|
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g   59 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSG   59 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence            45789999999999999999998   76554433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.57  E-value=3.7e-05  Score=59.57  Aligned_cols=26  Identities=38%  Similarity=0.763  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++..|+|+|++|+|||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.56  E-value=3.6e-05  Score=65.17  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   55 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence            4578999999999999999999998765555

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.54  E-value=5.1e-05  Score=64.86  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence            4468999999999999999999998766555

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.52  E-value=4e-05  Score=60.07  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .++..|+|+|++|||||||++.|.|.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.52  E-value=5.9e-05  Score=57.19  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..++++|++|||||||++.+.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            457899999999999999998653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.51  E-value=3.4e-05  Score=65.48  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|||||||++.|+|...+.+|
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   60 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998766555

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.51  E-value=0.00024  Score=70.49  Aligned_cols=31  Identities=23%  Similarity=0.198  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++.+|+|||++|+|||||++.|+|...+..|
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence            5679999999999999999999987765555

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.49  E-value=5.2e-05  Score=61.65  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      .++..++|+|++|+|||||++.|+|...
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            3557899999999999999999997543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.48  E-value=0.00065  Score=67.40  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence            5679999999999999999999998766555

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.47  E-value=0.00011  Score=65.94  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      ++..++|+|++|+|||||++.|+|...+..|.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~   55 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGD   55 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            45789999999999999999999987766653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.46  E-value=5.4e-05  Score=62.81  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +++..++|+|++|+|||||++.|+|.
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            34578999999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.45  E-value=7.8e-05  Score=56.51  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .....|+|+|++|+||||+++.|.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4457899999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.44  E-value=6.8e-05  Score=58.76  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++..|+|+|++||||||+++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34789999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.44  E-value=6.6e-05  Score=60.39  Aligned_cols=35  Identities=20%  Similarity=0.097  Sum_probs=22.6

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779            6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +-++.....  .++..|+|+|++|||||||++.|.|.
T Consensus        14 ~l~~isl~i--~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           14 GTENLYFQS--MRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eecceeccC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            334444433  34578999999999999999999763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.43  E-value=7.7e-05  Score=60.02  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKA   47 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~---~~~~~~~   47 (277)
                      ...|+|+|++||||||+++.|+   |...+..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~   58 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS   58 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            4689999999999999999999   8665443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.42  E-value=0.0001  Score=66.27  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      .++-.++|+|++|+|||||++.|+|...+..|.
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            466899999999999999999999987666654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00011  Score=66.75  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      .++..++|+|++|+|||||++.|+|...+..|.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~  133 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR  133 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence            456799999999999999999999988776664

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.39  E-value=8.2e-05  Score=62.10  Aligned_cols=28  Identities=18%  Similarity=0.106  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ...+..|+|+|++|||||||++.|.|..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3456899999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.38  E-value=8.4e-05  Score=57.77  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+..|+|+|++||||||+++.|.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.37  E-value=6.3e-05  Score=59.90  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=17.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh-CCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL-GRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~-~~~   43 (277)
                      ++..|+|+|++||||||+++.|. +..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45789999999999999999999 764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.37  E-value=0.0001  Score=62.87  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~   47 (277)
                      .+..|+|+|++|+|||||+++|+|...+..
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~  203 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQ  203 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence            456899999999999999999998765433

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.37  E-value=7.1e-05  Score=57.73  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      .+++|+|++|+|||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999997654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.36  E-value=9.9e-05  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0016  Score=56.67  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+-|+|.||+|+|||+|+++|.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            37899999999999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.34  E-value=0.00014  Score=66.15  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      ..+..++|+|++|+|||||++.|+|...+..|.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            466899999999999999999999987766664

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.33  E-value=0.00053  Score=56.32  Aligned_cols=91  Identities=9%  Similarity=0.073  Sum_probs=53.5

Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      +.+......+|+++.|+|+..+.+.....+-++    .+.   +|+++|+||+|....  ...+.         +.+..+
T Consensus        15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l~~---kp~ilVlNK~DL~~~--~~~~~---------~~~~~~   76 (282)
T 1puj_A           15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----LKN---KPRIMLLNKADKADA--AVTQQ---------WKEHFE   76 (282)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----CSS---SCEEEEEECGGGSCH--HHHHH---------HHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----HCC---CCEEEEEECcccCCH--HHHHH---------HHHHHH
Confidence            333344556799999999985555433222222    232   489999999998754  22222         333333


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++.      .|+..+.++.+|++.+...+.
T Consensus        77 ~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           77 NQGIRSLS------INSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred             hcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence            33444443      355556777777777766654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.31  E-value=0.00059  Score=58.28  Aligned_cols=100  Identities=9%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (277)
Q Consensus        91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~  170 (277)
                      +.+...+..+++..|++++|+|+..    .+..+...+.+.++.   +|+++|+||+|....  ....+.+..    .+.
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~  123 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMR  123 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence            3455555555667789999999982    233444455555442   499999999998754  211111111    023


Q ss_pred             HHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          171 EILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       171 ~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ......+.   .++      ..||+.+.++++|++.|.+...
T Consensus       124 ~~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          124 YSAKQLGLKPEDVF------LISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhcc
Confidence            33445554   233      4578888999999999987653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.31  E-value=9.9e-05  Score=62.12  Aligned_cols=29  Identities=28%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~   47 (277)
                      +..++|+|++|+|||||++.|+|...+..
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~  199 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE  199 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence            45899999999999999999998765433

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.29  E-value=0.00017  Score=65.61  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++|+|++|+|||||++.|+|...+..|
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  398 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSG  398 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            35578999999999999999999998766555

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=62.47  Aligned_cols=27  Identities=41%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      .+..++|+|++|||||||++.|+|...
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            457899999999999999999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.27  E-value=0.00016  Score=65.78  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            5578999999999999999999998765554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.25  E-value=0.00012  Score=56.19  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++|+||||+++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.24  E-value=0.00021  Score=64.10  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+..++|+|++|+|||||++.|+|...+.+|
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G  323 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEG  323 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998776665

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.22  E-value=0.00017  Score=60.04  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..+..|+|+|++|||||||++.|.|.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45589999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.21  E-value=0.00023  Score=63.88  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      .+-.++|+|++|+|||||++.|+|...+..|.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  342 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK  342 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            45789999999999999999999987766664

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.21  E-value=0.00016  Score=61.40  Aligned_cols=26  Identities=35%  Similarity=0.413  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +...|+|+|++|||||||+++|+|..
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34589999999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.21  E-value=0.00014  Score=54.98  Aligned_cols=23  Identities=35%  Similarity=0.679  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999753

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0029  Score=54.68  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+-|+|.||+|+|||+|+++|.+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHH
Confidence            36799999999999999999984

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0025  Score=54.70  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +-|+|.||+|+|||+|++++.+
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHH
Confidence            6699999999999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.20  E-value=0.00025  Score=64.55  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      .+-.++|+|++|+|||||++.|+|...+..|.
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  412 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK  412 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            45689999999999999999999987766664

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.18  E-value=0.0002  Score=55.64  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++..|+|+|++|+||||+.+.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.17  E-value=0.00018  Score=56.97  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .+..++|+|++|+|||||++.|+|..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44789999999999999999998743

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.17  E-value=0.00015  Score=65.88  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++++|++|+|||||++.|+|...+..|
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            35679999999999999999999998765555

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0019  Score=56.12  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+-|+|.||+|+|||+|+++|.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999984

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.17  E-value=0.0002  Score=56.95  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +..++..|+|.|++||||||+++.|.+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3356689999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.16  E-value=0.00018  Score=65.63  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++++|++|+|||||++.|+|...+..|
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            35679999999999999999999998765555

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.16  E-value=0.00019  Score=63.94  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      +..|+|+|+||||||||+++|+|...
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45699999999999999999998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.13  E-value=0.00021  Score=61.19  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .++..|+|+|++|+|||||++.|++..
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345789999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.12  E-value=0.00027  Score=59.02  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .....|+|+|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.12  E-value=0.00025  Score=55.24  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+..|+|+|++||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4577999999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.11  E-value=0.00018  Score=62.40  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~   44 (277)
                      +...|+|+|++|+|||||+++|+|...
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            446899999999999999999987543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00011  Score=55.77  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ..|+|+|++|+|||||++.|++..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.11  E-value=0.00022  Score=64.86  Aligned_cols=32  Identities=31%  Similarity=0.272  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++++|++|+|||||++.|+|...+..|
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G  398 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERG  398 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence            35678999999999999999999998765555

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00014  Score=64.02  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+.+++|+|++|+|||||++.|+|...+..|
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            4578999999999999999999987654443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00035  Score=63.53  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~   49 (277)
                      ..++|+|++|+|||||++.|+|...+..|.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            468999999999999999999988766663

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.10  E-value=0.00018  Score=61.38  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAF   45 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~   45 (277)
                      ..+++|+|++|+|||||++.|+|...+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            579999999999999999999986543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.07  E-value=0.00021  Score=54.39  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..++|+|++|+|||||+++|.+..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998644

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.07  E-value=0.00025  Score=62.46  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..++|+|++|+|||||++.|+|...+..|
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            67999999999999999999986554444

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.05  E-value=0.00044  Score=52.88  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+...|+|+|.+||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.05  E-value=0.00034  Score=54.40  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .....|+|+|++|+||||+++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.04  E-value=0.00031  Score=55.53  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.03  E-value=0.00038  Score=54.15  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999986

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.03  E-value=0.00045  Score=53.84  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ....|+|+|++|+||||+++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.01  E-value=0.00036  Score=53.56  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3889999999999999999754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.99  E-value=0.0024  Score=52.89  Aligned_cols=48  Identities=15%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ++.++|++++|+|++.+ ++... ..++..+.. .  +  .|+++|+||+|...+
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~--~--~~~ilV~NK~DL~~~  125 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F--K--VEPVIVFNKIDLLNE  125 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T--T--CEEEEEECCGGGCCH
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C--C--CCEEEEEEcccCCCc
Confidence            56889999999999843 45443 233333332 2  2  389999999998654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.99  E-value=0.00063  Score=52.73  Aligned_cols=29  Identities=21%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           12 PTSPSNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.++......|+|+|.+||||||+.+.|.
T Consensus         8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A            8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CCSCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            34445566789999999999999999986

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.98  E-value=0.00027  Score=67.23  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .+-+++|+|++|+|||||++.|+|...+..|
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999998765554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.98  E-value=0.0068  Score=57.77  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l   39 (277)
                      .+..++|+|++|+|||||++.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4578999999999999999998

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.97  E-value=0.00032  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.96  E-value=0.00024  Score=52.51  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ....++|+|++|+|||||+++|.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999998643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.95  E-value=0.00031  Score=59.48  Aligned_cols=29  Identities=17%  Similarity=0.147  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF   45 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~   45 (277)
                      .++-+++|+|++|+|||||++.|+|...+
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            35679999999999999999999986543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0018  Score=56.27  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+-|+|.||+|+|||+|+++|.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            47899999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.94  E-value=0.0053  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+++++|..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999974

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.93  E-value=0.00068  Score=57.94  Aligned_cols=99  Identities=10%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~  171 (277)
                      .+...+..++...+++++|+|+. .+..   .+...+...++.   +|+++|+||+|....  ....+.+..    .+..
T Consensus        60 ~f~~~L~~~~~~~~lil~VvD~~-d~~~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~  126 (369)
T 3ec1_A           60 DFLSMLHRIGESKALVVNIVDIF-DFNG---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRR  126 (369)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEETT-CSGG---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHH
T ss_pred             HHHHHHHHhhccCcEEEEEEECC-CCCC---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHH
Confidence            34445544455669999999998 3322   222333444442   499999999998754  221111111    0233


Q ss_pred             HHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          172 ILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       172 ~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .....+.   .++      ..|++.+.++.+|++.+.+...
T Consensus       127 ~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          127 MAEELGLCPVDVC------LVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHHTTTCCCSEEE------ECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccEE------EEECCCCCCHHHHHHHHHhhcc
Confidence            4455554   222      4578888999999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.00057  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +...|+|+|++||||||+.+.|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            446899999999999999999973

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.91  E-value=0.00053  Score=56.56  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .....|+|+|++|||||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.91  E-value=0.00053  Score=51.55  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l   39 (277)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0058  Score=53.28  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+-|+|.||+|+|||+|+++|.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHh
Confidence            347899999999999999999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.90  E-value=0.00058  Score=51.82  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..++|+|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            57999999999999999999854

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.89  E-value=0.00039  Score=58.15  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ...++|+|++|+|||||+|.|+|..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3678999999999999999999764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.86  E-value=0.0008  Score=52.45  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+..|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999999863

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.83  E-value=0.00075  Score=51.06  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999974

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.83  E-value=0.00067  Score=50.93  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.00071  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|+|++||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.82  E-value=0.00066  Score=51.65  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+|+|++|+||||++.+|.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.79  E-value=0.0095  Score=46.40  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=38.9

Q ss_pred             CceEEEEeCCCC-CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEe
Q 023779           68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT  145 (277)
Q Consensus        68 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~n  145 (277)
                      ...+.|+|||+. ...         .....+.    .+|.+++++..+ ..+... ...++.+....  +  .++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~--~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKLG--N--NRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--S--SSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhcc--C--CCEEEEEE
Confidence            456899999986 431         2223333    348899888876 222222 34444454422  1  26889999


Q ss_pred             CCCCCC
Q 023779          146 GGDDLE  151 (277)
Q Consensus       146 k~D~~~  151 (277)
                      ++|...
T Consensus       129 ~~~~~~  134 (209)
T 3cwq_A          129 IIPPYP  134 (209)
T ss_dssp             SBCCTT
T ss_pred             ecCCcc
Confidence            998543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.79  E-value=0.00079  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..|+|+|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.79  E-value=0.00052  Score=59.96  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAF   45 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~   45 (277)
                      ..+-+++|+|++|+|||||++.|+|...+
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45679999999999999999999986543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.77  E-value=0.00054  Score=56.04  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 023779           22 VVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++|+|++|+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.76  E-value=0.00097  Score=51.83  Aligned_cols=105  Identities=8%  Similarity=0.024  Sum_probs=56.9

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC---ccCcEEEEEeCC-CCCCcccccHHHHhcccCCc
Q 023779           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPK  167 (277)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ivv~nk~-D~~~~~~~~l~~~l~~~~~~  167 (277)
                      .+...+..+|.+.|++|||+|.+++-...-+..+..+..+...+   ...|++|+.||. |....  ....++.+. .. 
T Consensus       114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~-  189 (227)
T 3l82_B          114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH-  189 (227)
T ss_dssp             ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT-
T ss_pred             HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC-
Confidence            34444555677789999999998321112333332333332221   123899999985 55433  333333222 00 


Q ss_pred             hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                       +..    ....+++.    .++|.++.|+.+-++++.+.+.
T Consensus       190 -L~~----l~R~W~Iq----~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          190 -LNL----LNHPWLVQ----DTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             -GGG----GCSCEEEE----EEETTTCTTHHHHHHHHTTTTT
T ss_pred             -CcC----CCCCEEEE----EeECCCCcCHHHHHHHHHHHHH
Confidence             221    12344442    4677888999999999876654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.74  E-value=0.001  Score=51.45  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+...|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999999753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.73  E-value=0.0013  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..|+|+|.+|+||||+++.|.+
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.73  E-value=0.00093  Score=51.05  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|.|++||||||+.+.|.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.73  E-value=0.001  Score=50.29  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999974

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.70  E-value=0.0011  Score=49.98  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|+|++|+|||||++.|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.69  E-value=0.0011  Score=54.54  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...+..|+|+|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999963

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.69  E-value=9e-05  Score=58.80  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      .++|+|++|+|||||+++|+|...+.+|
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            4678999999999999999986654443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.69  E-value=0.0011  Score=50.74  Aligned_cols=22  Identities=14%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.67  E-value=0.0011  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...|+++|++||||||+.+.|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999986

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.66  E-value=0.0079  Score=49.05  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...++|.|++|+|||+++++|.+
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35699999999999999999974

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.66  E-value=0.0013  Score=48.41  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...+|+|++|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999975

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.66  E-value=0.00095  Score=66.07  Aligned_cols=31  Identities=29%  Similarity=0.281  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++.+++|+|++|+|||||++.|+|...+..|
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            5578999999999999999999998765554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.65  E-value=0.0014  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+..|+|+|.+||||||+.+.|.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999999986

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.65  E-value=0.0012  Score=51.89  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +...|+|+|.+||||||+.+.|.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999986

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.64  E-value=0.00093  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..++|+|++|+|||||++.|++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999984

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.62  E-value=0.00081  Score=54.13  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 023779           22 VVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++|+|++|+|||||+++|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.62  E-value=0.0014  Score=49.70  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..|+|+|.+|+||||+.+.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999975

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.59  E-value=0.001  Score=54.96  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ..+-.++|+|++|+|||||++.|++..
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999987644

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.59  E-value=0.0013  Score=50.87  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999974

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.58  E-value=0.0014  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..|+|+|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999886

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.58  E-value=0.0013  Score=50.30  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999963

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.57  E-value=0.0016  Score=50.36  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.56  E-value=0.0016  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999963

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.56  E-value=0.0011  Score=56.47  Aligned_cols=20  Identities=35%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+|+|+||+||||++++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999987

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.55  E-value=0.0073  Score=44.02  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|.|++|+|||++..+|..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            5599999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.54  E-value=0.0017  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ....|+|+|.+|+||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34679999999999999999987

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.52  E-value=0.0013  Score=56.31  Aligned_cols=24  Identities=21%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..|+|+|++|+|||||++.|.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            446899999999999999999985

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.51  E-value=0.0017  Score=50.08  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+...|+|+|.+||||||+.+.|.
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHH
Confidence            3456899999999999999999986

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.51  E-value=0.0017  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...|+|+|.+||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.51  E-value=0.0024  Score=53.51  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .+.|+|+|++|+|||||...|...-
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC
Confidence            3579999999999999999998543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.51  E-value=0.0015  Score=51.11  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.50  E-value=0.0018  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ....|+|+|.+||||||+.+.|.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.47  E-value=0.0016  Score=64.44  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++.+++|+|++|+|||||++.|+|...+..|
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            35679999999999999999999998766555

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.47  E-value=0.011  Score=56.27  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..++|+||+|+|||||++.+.+
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHHH
Confidence            457899999999999999998753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.47  E-value=0.0011  Score=55.79  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..++|+|++|+|||||++.|++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.46  E-value=0.0017  Score=50.85  Aligned_cols=20  Identities=40%  Similarity=0.787  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999996

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.46  E-value=0.0012  Score=53.98  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 023779           22 VVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~   42 (277)
                      |+|+|++|+|||||+++|.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.45  E-value=0.0025  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+.+.|+|+|++||||+|....|..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456788899999999999999873

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.45  E-value=0.0016  Score=51.00  Aligned_cols=24  Identities=13%  Similarity=-0.015  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..++|+|++|+|||||+..|++
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.45  E-value=0.0021  Score=51.51  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..+|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999996

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.43  E-value=0.0012  Score=53.62  Aligned_cols=43  Identities=12%  Similarity=0.065  Sum_probs=29.1

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ...+|+++.|+|+..+.+..... +.+    .+    +|.++|+||+|....
T Consensus        19 l~~~D~vl~VvDar~P~~~~~~~-l~l----l~----k~~iivlNK~DL~~~   61 (262)
T 3cnl_A           19 LRLVNTVVEVRDARAPFATSAYG-VDF----SR----KETIILLNKVDIADE   61 (262)
T ss_dssp             HTTCSEEEEEEETTSTTTTSCTT-SCC----TT----SEEEEEEECGGGSCH
T ss_pred             HhhCCEEEEEeeCCCCCcCcChH-HHh----cC----CCcEEEEECccCCCH
Confidence            35669999999998554443211 111    12    389999999998765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.43  E-value=0.0013  Score=52.95  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|+|++|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999964

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.43  E-value=0.002  Score=50.25  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..|+|+|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999873

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.43  E-value=0.033  Score=46.45  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+|++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            36799999999999999999974

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.42  E-value=0.0019  Score=52.08  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++|||||||.+.|.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.41  E-value=0.0021  Score=50.37  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999974

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.41  E-value=0.0014  Score=62.46  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .+.+++|+|++|+|||||++.|+|..
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.40  E-value=0.0026  Score=48.50  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...|+|+|.+||||||+.+.|.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.40  E-value=0.0017  Score=48.99  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999999863

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.39  E-value=0.0018  Score=52.17  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...+..|+|+|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.38  E-value=0.002  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...|+|+|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.34  E-value=0.0022  Score=49.29  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|+|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.34  E-value=0.0019  Score=51.40  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+..++|+|++|+|||||+..|++.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999999863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.33  E-value=0.002  Score=50.65  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.32  E-value=0.00095  Score=52.09  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .|+|+|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.32  E-value=0.0024  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..|+|+|++|+||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999987

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.27  E-value=0.0028  Score=50.99  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+...|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.26  E-value=0.0037  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ....|+|+|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.24  E-value=0.00073  Score=58.58  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      .++|+|+||+|||||+++|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            89999999999999999885

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.24  E-value=0.0031  Score=49.18  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..|+|+|.+|+||||+.+.|.+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.22  E-value=0.0029  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      +|+|.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999986

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.20  E-value=0.0029  Score=48.35  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.19  E-value=0.0036  Score=49.66  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+..|+|.|++||||||+++.|..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3568899999999999999999974

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.19  E-value=0.0018  Score=60.84  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..+..++|+|++|+|||||++.|.|.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            34578999999999999999999864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.19  E-value=0.0038  Score=51.62  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|+|++|||||||...|..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            346789999999999999999973

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.18  E-value=0.0025  Score=48.42  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            359999999999999999985

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.17  E-value=0.0027  Score=47.63  Aligned_cols=21  Identities=19%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999986

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.17  E-value=0.0035  Score=49.86  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|+|++|+||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.17  E-value=0.0036  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...++|+|++|+|||++++.+..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.17  E-value=0.0028  Score=49.52  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999986

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.16  E-value=0.0037  Score=48.55  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...+|+|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            567899999999999999974

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.14  E-value=0.0022  Score=48.65  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=16.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.13  E-value=0.0037  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999999863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.12  E-value=0.003  Score=50.81  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++|+||||++++|.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4599999999999999999975

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.10  E-value=0.0026  Score=51.97  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..++|+|++|+|||||+..|++
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999885

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.10  E-value=0.0035  Score=49.41  Aligned_cols=20  Identities=30%  Similarity=0.733  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      .|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999986

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.08  E-value=0.0036  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      +|+|+|++||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999973

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.06  E-value=0.0021  Score=59.41  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+..++|+|++|||||||++.|+
T Consensus       347 ~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          347 LGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCCEEEEEeeCCCCHHHHHHHHH
Confidence            45689999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.03  E-value=0.0036  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|.+||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.00  E-value=0.0022  Score=57.59  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++..|+|+|++||||||+++.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            55789999999999999999998653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.96  E-value=0.0047  Score=52.02  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...+|+|++|+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999974

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.96  E-value=0.028  Score=54.23  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..++|+|++|+|||||++.| |..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHH
Confidence            578999999999999999998 644

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.95  E-value=0.0051  Score=50.94  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++.|+|+||||||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            357899999999999999999743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.94  E-value=0.0048  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|.|++|+|||+|+.+|..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.92  E-value=0.0049  Score=46.04  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +--.|+|+|.+||||||+.+.|.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999985

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.92  E-value=0.0053  Score=47.32  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ....|+|+|++|+|||||...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999743

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.92  E-value=0.013  Score=54.89  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....++|+|++|+|||+++..|..
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=95.90  E-value=0.13  Score=41.41  Aligned_cols=64  Identities=14%  Similarity=0.068  Sum_probs=38.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      ...+.|||||+..+         ......+    ..+|.+++++..+ ..+... ...++.+... +.+  .++.+|+|+
T Consensus       144 ~yD~viiD~pp~~~---------~~~~~~l----~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~-~~~--~~~~vv~N~  206 (267)
T 3k9g_A          144 KYDYIVIDTNPSLD---------VTLKNAL----LCSDYVIIPMTAE-KWAVESLDLFNFFVRKL-NLF--LPIFLIITR  206 (267)
T ss_dssp             TCSEEEEEECSSCS---------HHHHHHH----TTCSEEEEEEESC-TTHHHHHHHHHHHHHTT-TCC--CCEEEEEEE
T ss_pred             CCCEEEEECcCCcc---------HHHHHHH----HHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH-hcc--CCEEEEEec
Confidence            35688999988543         1222232    2369999999886 443333 3444555543 332  267899999


Q ss_pred             CC
Q 023779          147 GD  148 (277)
Q Consensus       147 ~D  148 (277)
                      .+
T Consensus       207 ~~  208 (267)
T 3k9g_A          207 FK  208 (267)
T ss_dssp             EC
T ss_pred             cc
Confidence            84

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.90  E-value=0.005  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....++|.|++|+||||+++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.89  E-value=0.0034  Score=53.17  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      .+..++|+|++|+|||||++.|++..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.88  E-value=0.0038  Score=54.40  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..++|+|++|+|||||+++|.+..
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4678999999999999999997543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.88  E-value=0.03  Score=47.96  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+++.+|..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999963

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.86  E-value=0.0043  Score=48.07  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+++.||+|+||||++.+|..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988864

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.86  E-value=0.0028  Score=59.12  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +..++|+|++|+|||||++.|.|..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            4689999999999999999998754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.81  E-value=0.0046  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...++|+|++|+|||+++..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.80  E-value=0.0061  Score=51.71  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..++|+|++|+||||++++|.+
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            3789999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.79  E-value=0.0067  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++||||||+...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.78  E-value=0.0028  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=17.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.75  E-value=0.0062  Score=47.06  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999863

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.73  E-value=0.0064  Score=50.08  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.72  E-value=0.038  Score=51.80  Aligned_cols=71  Identities=15%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ..+-|+|.|++|+|||+|+++|.+...                        ..+..++.+-+....  ..+....+...+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk~--~gese~~lr~lF  290 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSKL--AGESESNLRKAF  290 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSSC--TTHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhccc--chHHHHHHHHHH
Confidence            347899999999999999999985421                        122344443332211  112234455555


Q ss_pred             hhcCCCccEEEEEEeCC
Q 023779           98 GMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~  114 (277)
                      ..+.....++|++-++.
T Consensus       291 ~~A~~~~PsIIfIDEiD  307 (806)
T 3cf2_A          291 EEAEKNAPAIIFIDELD  307 (806)
T ss_dssp             HHHTTSCSEEEEEESGG
T ss_pred             HHHHHcCCeEEEEehhc
Confidence            55555667778776664

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.71  E-value=0.0067  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+++++|.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            36799999999999999999985

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.71  E-value=0.0097  Score=48.99  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++-++|.|++|+|||+++.+|..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36788889999999999999974

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.69  E-value=0.0088  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|+|.+||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.69  E-value=0.0047  Score=55.31  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l   39 (277)
                      .+..++|+|++|+|||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4578999999999999999994

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.68  E-value=0.0069  Score=47.91  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+..+++|+|++||||||+...|.
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHH
Confidence            3456899999999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.68  E-value=0.0065  Score=50.95  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999998864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.66  E-value=0.0092  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...++|+|++|+|||++++.|.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHH
Confidence            35799999999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.63  E-value=0.0059  Score=56.36  Aligned_cols=19  Identities=42%  Similarity=0.611  Sum_probs=17.3

Q ss_pred             CCeEEEEEcCCCCcHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATG   36 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStli   36 (277)
                      .+..++|+|++|+|||||+
T Consensus        43 ~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           43 RGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHh
Confidence            5578999999999999996

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.62  E-value=0.0048  Score=51.57  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+|+|++|+|||||+.+|.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            78899999999999999997

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.62  E-value=0.0077  Score=49.49  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+++++|.+
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            36799999999999999999974

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.60  E-value=0.0088  Score=49.36  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|.|++|+|||++++++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999987763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.55  E-value=0.12  Score=42.71  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      -+++.|++|+|||+++.+|..
T Consensus        50 ~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHH
Confidence            356667799999999999973

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.49  E-value=0.0085  Score=51.38  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.|+|+|++|+|||||...|.
T Consensus         3 ~~i~i~GptgsGKttla~~La   23 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLA   23 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHH
Confidence            678999999999999999986

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.45  E-value=0.018  Score=48.73  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .++|.|++|+||||++..+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.44  E-value=0.005  Score=51.92  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 023779           22 VVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~   41 (277)
                      ++|+|++|+||||+++.|.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999886

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.41  E-value=0.015  Score=55.21  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ..++|+|++|+|||+++..|...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            45899999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.40  E-value=0.0097  Score=47.22  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+..++|+|++|+|||||+..++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999977664

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.38  E-value=0.0065  Score=49.10  Aligned_cols=25  Identities=20%  Similarity=0.229  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+...|+|.|..||||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3557899999999999999999863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.35  E-value=0.027  Score=46.01  Aligned_cols=99  Identities=9%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             HHHhhcCCCccEEEEEEeCC--CCCCHHHHHHH----HHHHHHh-CcCccCcEEEEEeC-CCCCCcccccHHHHhcccCC
Q 023779           95 KCLGMAKDGIHAFLVVFSVT--NRFSQEEETAV----HRLPNLF-GKNVFDYMIVVFTG-GDDLEDHEKTLEDFLGHECP  166 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~----~~l~~~~-~~~~~~~~ivv~nk-~D~~~~~~~~l~~~l~~~~~  166 (277)
                      .....++.+.|++|||+|.+  .++.  .+..+    .++.+-. -.++  |++|+.|| -|....  ....++.+. ..
T Consensus       202 plWr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~a--pLLVfANKkQDlp~A--ms~~EI~e~-L~  274 (312)
T 3l2o_B          202 PQIQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGR--PLLVLSCISQGDVKR--MPCFYLAHE-LH  274 (312)
T ss_dssp             HHHHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTC--CEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred             HHHHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCC--eEEEEeCCcccccCC--CCHHHHHHH-cC
Confidence            33444566779999999998  3444  22222    2332211 1223  89999996 465444  333333222 00


Q ss_pred             chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                        +..    ....+++    ..++|.++.|+.+-++++.+.+..
T Consensus       275 --L~~----l~r~W~I----q~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          275 --LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             --GGG----GCSCEEE----EEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             --Ccc----CCCcEEE----EecccCCCcCHHHHHHHHHHHHHh
Confidence              221    1234443    256778889999999998877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-28
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-07
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	3e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-05

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G +    S   S   +   +  +    G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137
           L +    ++     I     +    I   L V  +   R    ++     + + FGK ++
Sbjct: 90  LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
           +  IV  T            ++F   +  + L ++++   +                   
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA-------------- 192

Query: 198 RQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE 239
               S +  V+++N G+   ++       L +  A +  L +
Sbjct: 193 --QASDIPVVLIENSGRCNKND--SDEKVLPNGIAWIPHLVQ 230

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVI 74
            +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           D PG+   +   +           + K   + +     ++    ++ +  + +  ++  K
Sbjct: 113 DLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163

Query: 135 NVFDYMIVVFTGGD-DLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179
                   V T  D D+ +           E  K L++I   C N 
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDKE--KVLQDIRLNCVNT 203

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+G    GKS   + +   K     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           + +     +G + ++ +      I   + +  +  R   ++   +++  + +   + +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPK 167
            ++     D+ +  + LE F       
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 21/196 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           V L+G    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
            ++  + +G E ++ +   +  ++                +      P L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
            V               D L  E  K L + L       +     T     G   +++ L
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTG---AGLPALKEAL 163

Query: 202 -SLVNSVIVQNGGQPY 216
            +LV S       +P 
Sbjct: 164 HALVRSTPPPEMPKPV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.82
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.81
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.81
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.79
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.76
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.75
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.75
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.75
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.74
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.74
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.73
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.73
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.73
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.72
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.72
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.71
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.7
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.69
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.69
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.68
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.68
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.67
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.67
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.66
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.64
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.62
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.61
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.6
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.57
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.55
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.52
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.43
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.43
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.4
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.35
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.33
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.16
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.13
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.07
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.04
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.99
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.99
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.96
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.89
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.83
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.8
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.79
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.78
d1okkd2	207	GTPase domain of the signal recognition particle r	98.74
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.38
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.27
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.26
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.23
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.2
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.18
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.18
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.07
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.94
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.92
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.89
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.89
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.87
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.86
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.85
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.83
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.8
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.79
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.7
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.65
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.49
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.48
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.37
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.29
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.25
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.24
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.22
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.22
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.2
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.18
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.16
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.15
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.14
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.11
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.09
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.09
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.98
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.98
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.97
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.96
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.95
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.93
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.9
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.89
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.88
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.86
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.81
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.8
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.79
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.71
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.66
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.56
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.54
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.52
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.45
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.44
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.4
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.38
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.23
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.19
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.18
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.17
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.13
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.09
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.07
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.06
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.0
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.94
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.93
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.92
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.89
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.87
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.86
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.84
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.78
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.72
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.62
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.6
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.55
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.51
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.49
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.48
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.39
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.37
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.34
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.33
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.33
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.89
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.88
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.81
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.63
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.51
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.51
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.43
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.33
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.2
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.2
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.77
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.76
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.76
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.66
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.52
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.37
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.24
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.19
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.11
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.9
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.88
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.86
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.67
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.66
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.53
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.36
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.03
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.56
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.38
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.94
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.81
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.67
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.62
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.52
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.86
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.3
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.96
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.91
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.84
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.1
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.36
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	82.13
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.63
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.51
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.29

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.9e-23  Score=159.40  Aligned_cols=171  Identities=20%  Similarity=0.209  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+|+|++|||||||+|+|+|......  +....|+...........+..+.++||||+.......   ...+...+..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee--cccCCcccccccceeeeeeeeeeeccccccccccccc---chhccccccc
Confidence            5799999999999999999999875332  2233333333333344678899999999998643322   2333444444


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-  178 (277)
                      +...+|++++|+|++.+++..+..++++++...+.   .|+++|+||+|.....    +..+..     +.   ...+. 
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~----~~~~~~-----~~---~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYP----EEAMKA-----YH---ELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSH----HHHHHH-----HH---HTSTTS
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCH----HHHHHH-----HH---hhcccC
Confidence            56788999999999978888888888888775433   4999999999986541    122221     22   22232 


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCC
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYT  217 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~  217 (277)
                      .++      ..||+.+.|+++|++.|.+.+++ +..+|+
T Consensus       146 ~~~------~iSA~~~~gi~~L~~~i~~~lpe-~p~~~p  177 (178)
T d1wf3a1         146 EPR------MLSALDERQVAELKADLLALMPE-GPFFYP  177 (178)
T ss_dssp             EEE------ECCTTCHHHHHHHHHHHHTTCCB-CCCSSC
T ss_pred             ceE------EEecCCCCCHHHHHHHHHHhCCC-CCCCCC
Confidence            222      24888999999999999999876 333444

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.91  E-value=9.6e-24  Score=171.04  Aligned_cols=195  Identities=21%  Similarity=0.323  Sum_probs=137.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ...++|+|+|.+|+|||||+|+|+|...+..... .++|..+..... ...+..+.||||||+.++......+...+..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~~~-~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEEEE-EeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            3568999999999999999999999998765532 344555544443 47889999999999998766555555544444


Q ss_pred             HhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      .  ....+|+++||++++ .+++..+...++.+...||.+++++++||+||+|...+.+..+++++.. ....+..++..
T Consensus       108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~  184 (257)
T d1h65a_         108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS  184 (257)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred             H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHH
Confidence            3  235789999999887 5799999999999999999999999999999999887655777777765 22334555555


Q ss_pred             cCC----------eEEEEeCCCcccc---------cChhHHHHHHHHHHHHHhhcCCCCC
Q 023779          176 CDN----------RCVLFDNKTKDEA---------KGTEQVRQLLSLVNSVIVQNGGQPY  216 (277)
Q Consensus       176 ~~~----------~~~~~~~~~~~s~---------~~~~~~~~L~~~i~~~~~~~~~~~~  216 (277)
                      +..          .+..+.+...+..         .....++.++..+..++.....+.+
T Consensus       185 ~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~  244 (257)
T d1h65a_         185 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIF  244 (257)
T ss_dssp             HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEE
T ss_pred             HhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCcc
Confidence            432          2233332211100         0113577888888888766544443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=5.3e-21  Score=146.79  Aligned_cols=167  Identities=15%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (277)
                      |+|+|.+|||||||+|+|+|.......  ..+.|+...+.......+..+.+|||||+.............+...    .
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~----~   77 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH----I   77 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH----H
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH----H
Confidence            999999999999999999987753322  3344444444444445677899999999875332222222222322    3


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEE
Q 023779          102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (277)
Q Consensus       102 ~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  181 (277)
                      ...+++++++|+.............++.........+|+++|+||+|....  ..+..         +.+.+...+..++
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~~~~~  146 (180)
T d1udxa2          78 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGLAVL  146 (180)
T ss_dssp             TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTSCEE
T ss_pred             HhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHH---------HHHHHHhcCCeEE
Confidence            566999999998733222223333333332111223489999999998766  33332         2333333344444


Q ss_pred             EEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          182 LFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       182 ~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                            ..|++.+.|+++|++.|..+++..
T Consensus       147 ------~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         147 ------PVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             ------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ------EEEcCCCCCHHHHHHHHHHHHhhc
Confidence                  358888999999999999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=9.9e-21  Score=145.64  Aligned_cols=163  Identities=21%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH----HHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV----GKEIVKC   96 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----~~~~~~~   96 (277)
                      +|+|+|++|||||||+|+|+|.....+  ...+.|.....     +....+.++||||++.........    ...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~--~~~g~T~~~~~-----~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKIIE-----IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCEE-----EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--CCCCEeecccc-----cccccceecccCCceeccccccccccccchhhhhh
Confidence            599999999999999999999875321  12233433322     223356799999998766655433    3334444


Q ss_pred             HhhcCCCccEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779           97 LGMAKDGIHAFLVVFSVTN-----------RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~  165 (277)
                      +......+|++++|+|+..           .+...+...++.+... +    .|+++|+||+|..... ....+.+.   
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~----~p~iiv~NK~D~~~~~-~~~~~~~~---  145 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-D----IPTIVAVNKLDKIKNV-QEVINFLA---  145 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-T----CCEEEEEECGGGCSCH-HHHHHHHH---
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-C----CCEEEEEeeeehhhhH-HHHHHHHH---
Confidence            4455677899999999851           3444555566666553 3    3899999999987552 11111111   


Q ss_pred             CchHHHHHhh-cC---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          166 PKPLKEILQL-CD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       166 ~~~~~~~~~~-~~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                           ..+.. ..   ..++      +.|++.+.|+++|++.|.+.+++
T Consensus       146 -----~~~~~~~~~~~~~~~------~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         146 -----EKFEVPLSEIDKVFI------PISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             -----HHHTCCGGGHHHHEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -----HHhcccccccCCeEE------EEECCCCCCHHHHHHHHHHHccC
Confidence                 11110 01   1122      45888889999999999998875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=5.8e-20  Score=142.74  Aligned_cols=174  Identities=16%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH--HHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~   92 (277)
                      |..+-.+|+|+|++|||||||+|+|+|...........+.|......    .....+.++|++|..........  ....
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY----IINDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE----EETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc----cccccceEEEEEeeccccccccccchhhh
Confidence            44445689999999999999999999865322211112222222221    23455678999888765544332  2223


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      +..........++++++|+|+..+++..+..+++++... +.    |+++|+||+|...+  ..+++++..     +++.
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~~----piivv~NK~D~~~~--~~~~~~~~~-----~~~~  162 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-GI----PVIVIATKADKIPK--GKWDKHAKV-----VRQT  162 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred             HHhhhhccccchhhhhhhhhccccccccccccccccccc-cC----cceechhhccccCH--HHHHHHHHH-----HHHH
Confidence            333334456778999999999878888888888888764 32    89999999998876  667666665     5555


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..-....+.     ..||..+.|+++|++.|.+++.
T Consensus       163 l~~~~~~~~~-----~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         163 LNIDPEDELI-----LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HTCCTTSEEE-----ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             hcccCCCCEE-----EEeCCCCCCHHHHHHHHHHHhC
Confidence            4432322222     3577888999999999988863

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.2e-20  Score=143.03  Aligned_cols=171  Identities=20%  Similarity=0.270  Sum_probs=106.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch-----HHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-----FVGKEI   93 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-----~~~~~~   93 (277)
                      .++|+|+|++|||||||+|+|+|......+.  ...++.........+++..+.++||||+........     ......
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSP--IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC--CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeec--ccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            4899999999999999999999877533332  222333222223347888999999999864221110     011122


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      ...+    ..+|++++|+|+..++......++.++... +.    |+++|+||+|........+.++...     +....
T Consensus        86 ~~~~----~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~~----~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~~  151 (186)
T d1mkya2          86 VDSI----EKADVVVIVLDATQGITRQDQRMAGLMERR-GR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREKL  151 (186)
T ss_dssp             HHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHHC
T ss_pred             HHHH----hcCCEEEEeecccccchhhHHHHHHHHHHc-CC----ceeeeccchhhhcchhhhhhhHHHH-----HHHHh
Confidence            2222    345999999999877777777777766653 32    8999999999875532334443332     33322


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..-     +....||+.+.|+++|++.|...+..
T Consensus       152 ~~~~~~-----~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         152 YFIDYS-----PLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             GGGTTS-----CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccCCC-----eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            222211     11246888999999999999888765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.3e-20  Score=138.45  Aligned_cols=160  Identities=19%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +.+|+++|++|||||||+|+|+|.......  ..+.++...........+..+.++||||+.+......   ........
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~   75 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVT--DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE---RIGIERAW   75 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCC--SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH---HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEee--cccccccceEeeeeeccCceeeeccccccccccccch---hHHHHHHH
Confidence            378999999999999999999988753222  2222332223333447888999999999987543222   22222233


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      .++..+|++++++|............+..+.......  .|+++|+||+|.....  .   .+..           ..+.
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~~--~---~~~~-----------~~~~  137 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGET--L---GMSE-----------VNGH  137 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCCC--C---EEEE-----------ETTE
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhhH--H---HHHH-----------hCCC
Confidence            3456789999999998555545544444333333332  4999999999965441  0   0111           1112


Q ss_pred             eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .++      ..||+.+.|+++|++.|.+.
T Consensus       138 ~~~------~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         138 ALI------RLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             EEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred             cEE------EEECCCCCCHHHHHHHHHhh
Confidence            222      46888999999999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.4e-19  Score=136.26  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      +|+|+|++|||||||+|+|+|......+  ....++..............+.++||||+.........  ..........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~--~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE--DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS--QKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCC--HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec--ccCceeeccccccccccccccccccccceeeeeccccc--cccccccccc
Confidence            5999999999999999999987653222  22222222223233467778999999998764422111  1122222223


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      ...+|+++++++.+.++...+..++.++... +.    |+++|+||+|....  ... + +       ..++...-..  
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~~----pviiv~NK~Dl~~~--~~~-~-~-------~~~~~~~~~~--  139 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE--FER-E-V-------KPELYSLGFG--  139 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH--HHH-H-T-------HHHHGGGSSC--
T ss_pred             cccCcEEEEeecccccccccccccccccccc-cc----cccccchhhhhhhh--hhh-H-H-------HHHHHhcCCC--
Confidence            4567999999999878888887777777753 43    89999999997643  111 1 1       1222222112  


Q ss_pred             EEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                          ...+.|++++.|+++|++.|.+.+++.
T Consensus       140 ----~~i~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         140 ----EPIPVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             ----SCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ----CeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence                223568999999999999999988764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=1.4e-19  Score=138.65  Aligned_cols=167  Identities=18%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC-----CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      +.++|+++|++|+|||||+|+|++........     ...+.+...... .....+..+.++||||..           .
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~d~~g~~-----------~   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLENYRITLVDAPGHA-----------D   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC-EEEETTEEEEECCCSSHH-----------H
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccc-ccccCCcccccccccccc-----------c
Confidence            34789999999999999999999754311110     011222222222 223577889999999933           3


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      +......+...+|++++++|+..+....++..+.++... +.    |+++|+||+|....  ..+......     .+.+
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~~----p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~  139 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSI  139 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhc-CC----cceeccccccccCH--HHHHHHHHH-----HHHH
Confidence            344444455678999999999977777777777666653 33    89999999998766  443333222     3444


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +.......  ..+..+.||+.+.|+++|++.|...++.
T Consensus       140 ~~~~~~~~--~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         140 LQSTHNLK--NSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHSSSGG--GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhcCC--CCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            43322100  0011246889999999999999998876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=7.4e-20  Score=147.78  Aligned_cols=218  Identities=17%  Similarity=0.235  Sum_probs=141.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh---CCCCc-------------cccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL---GRKAF-------------KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~---~~~~~-------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      +-++|+++|+.|+|||||+.+|+   |....             .......+.|.......+. |++..++|+||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~-~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE-ETTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec-cCCeEEEEecCCchhh
Confidence            34689999999999999999985   21100             0001112444455445444 8999999999999998


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l  161 (277)
                      +..       +....+..+    |+.++|+|+..+........++...+. +-    |.++++||+|....   .+...+
T Consensus        84 F~~-------e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~~-~l----P~i~fINKmDr~~a---d~~~~l  144 (276)
T d2bv3a2          84 FTI-------EVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA---DLWLVI  144 (276)
T ss_dssp             CST-------THHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHTT-TC----CEEEEEECTTSTTC---CHHHHH
T ss_pred             hHH-------HHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHHc-CC----CEEEEEeccccccc---ccchhH
Confidence            754       455555544    999999999999999999998888864 33    99999999997665   444444


Q ss_pred             cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc---CCC-----CCChHHHHHHHHHHHHHHH
Q 023779          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN---GGQ-----PYTDELKRGATELRDKKAE  233 (277)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~  233 (277)
                              .++-+.++.+.++++-+....    .++..+.+.+.......   .+.     ..+.++....+++  +++.
T Consensus       145 --------~ei~~~l~~~~vp~~~Pig~~----~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~--~~~l  210 (276)
T d2bv3a2         145 --------RTMQERLGARPVVMQLPIGRE----DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREY--HEKL  210 (276)
T ss_dssp             --------HHHHHTTCCCEEECEEEESCG----GGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHH--HHHH
T ss_pred             --------HHHHHHhCCCeEEEEecccCC----CceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHH--HHHH
Confidence                    445567787777765543322    22222222221110000   111     2456666666666  5566


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779          234 VDSLKEYSKREISKLMGQMQESYEDRIKRMAEMRAG  269 (277)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
                      ++.+.+.+++.++++.+..+...++..+.+++.+.+
T Consensus       211 ~e~vae~Dd~L~e~yle~~e~~~eel~~~l~~a~~~  246 (276)
T d2bv3a2         211 VEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTID  246 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             hhhhhcccHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Confidence            677778888888888887777766666666665543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=5.1e-19  Score=134.16  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++..+......  ..+......... ..+  ..+.+|||||..           ++....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~wDt~G~e-----------~~~~~~   71 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTIY-RNDKRIKLQIWDTAGQE-----------RYRTIT   71 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCC--CCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCccccc--ccccceeeEEEE-eecceEEEEEEECCCch-----------hhHHHH
Confidence            7899999999999999999987654322222  222222222222 233  358899999943           233344


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++..-+... ..++..+.......  .|+++|+||+|.........++         ...+....
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~v~~~~---------~~~~~~~~  140 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSER---------GRQLADHL  140 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccccccchhh---------hHHHHHHc
Confidence            556789999999999983222221 23333344433333  3889999999965431011111         22344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +.+++      ++|++.+.++.++++.|.+.+.+
T Consensus       141 ~~~~~------e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         141 GFEFF------EASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             TCEEE------ECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CCEEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence            55554      56888889999999998877643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.79  E-value=9.6e-19  Score=132.04  Aligned_cols=159  Identities=14%  Similarity=0.077  Sum_probs=100.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|++|||||||+|+|.+.....     ..+|........ ...+..+.+|||||..           .+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~-----~~~t~~~~~~~~-~~~~~~~~~~D~~G~~-----------~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-----ISPTLGFNIKTL-EHRGFKLNIWDVGGQK-----------SLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSS-----CCCCSSEEEEEE-EETTEEEEEEEECCSH-----------HHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCc-----ccceEeeeeeec-cccccceeeeecCcch-----------hhhhHHH
Confidence            4799999999999999999999876421     233433333333 3678889999999932           3444445


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++..++++++|+|+....+..+  ..+...+......+  .|++||.||+|....  ....+....     +.  +...
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~  133 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDSI  133 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCC--CceEEEEeccccccc--cCHHHHHHH-----HH--hhhh
Confidence            56788999999999984333332  22222332222222  499999999997654  333332221     00  1112


Q ss_pred             CC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .. .+..    .++||+.+.|+.+++++|.+.+.
T Consensus       134 ~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         134 RSHHWRI----QGCSAVTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             CSSCEEE----EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCCEE----EEEECCCCCCHHHHHHHHHHHHH
Confidence            22 2222    25688899999999999877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=5.7e-19  Score=132.57  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~   97 (277)
                      ++|+|+|.+|||||||+|+|+|.......  ..+.++...........+..+.++||||+.......  ..........+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT--DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC--CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee--ccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            58999999999999999999987653222  222222222222334678889999999986543211  11112233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                          ..+|++++|+|++.+....+......+.    .   .++++++||.|....  ...++...         .+.. .
T Consensus        79 ----~~ad~ii~v~d~~~~~~~~~~~~~~~~~----~---~~~i~~~~k~d~~~~--~~~~~~~~---------~~~~-~  135 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSPLDEEDRKILERIK----N---KRYLVVINKVDVVEK--INEEEIKN---------KLGT-D  135 (160)
T ss_dssp             ----HHCSEEEEEEETTSCCCHHHHHHHHHHT----T---SSEEEEEEECSSCCC--CCHHHHHH---------HHTC-S
T ss_pred             ----HhCCEEEEEEeCCCCcchhhhhhhhhcc----c---ccceeeeeeccccch--hhhHHHHH---------HhCC-C
Confidence                3459999999999777666655444332    1   289999999998866  33332222         1111 1


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ..++      ..|++++.|+++|++.|.+
T Consensus       136 ~~~~------~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         136 RHMV------KISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             TTEE------EEEGGGTCCHHHHHHHHHH
T ss_pred             CcEE------EEECCCCCCHHHHHHHHHh
Confidence            2222      4588899999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=2.7e-19  Score=137.70  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      .|+|+|++|||||||+|+|+|.....  ....+.|+..........++..+.+|||||+.........+...+...+.  
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--
Confidence            49999999999999999999877522  22334455544444444567789999999975322222233333444433  


Q ss_pred             CCCccEEEEEEeCC--CCCCHHHH-HHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          101 KDGIHAFLVVFSVT--NRFSQEEE-TAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       101 ~~~~~~~l~v~d~~--~~~~~~~~-~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                        .++.++++++..  ......+. ............. ..+|+++|+||+|....  ...           +..+.+..
T Consensus        79 --~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~~  143 (185)
T d1lnza2          79 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEKL  143 (185)
T ss_dssp             --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHHC
T ss_pred             --HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHHh
Confidence              337777777765  22333332 2222222222222 23589999999997644  111           12222333


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..+    .....||.++.|+++|++.|.+.++.
T Consensus       144 ~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         144 TDDY----PVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CSCC----CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             ccCC----cEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            2211    22356899999999999999999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.78  E-value=4.5e-18  Score=131.32  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=109.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCC------c------c--ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKA------F------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .++|+++|+.++|||||+++|++...      +      .  ......+.|.......+. +.++.+.++||||..    
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-~~~~~~~~iDtPGh~----   77 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA----   77 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH----
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-eceeeEEeecCcchH----
Confidence            38999999999999999999974210      0      0  001112455555545443 778999999999943    


Q ss_pred             CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (277)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~  164 (277)
                             .+......+...+|++++|+|+..++...+++.+..+.....+    |+||++||+|..... ..++.+..+ 
T Consensus        78 -------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~----~iIv~iNK~D~~~~~-~~~~~i~~~-  144 (196)
T d1d2ea3          78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE----HVVVYVNKADAVQDS-EMVELVELE-  144 (196)
T ss_dssp             -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC----CEEEEEECGGGCSCH-HHHHHHHHH-
T ss_pred             -------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCC----cEEEEEecccccccH-HHHHHHHHH-
Confidence                   3445555566788999999999988888888887877775333    799999999987541 333444434 


Q ss_pred             CCchHHHHHhhcCC-----eEEEEeCCCcccccCh----------hHHHHHHHHHHHHHh
Q 023779          165 CPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV  209 (277)
Q Consensus       165 ~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~----------~~~~~L~~~i~~~~~  209 (277)
                          ++.++..++.     .++      ..|+..+          .++..|++.|...++
T Consensus       145 ----i~~~l~~~~~~~~~~pii------~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         145 ----IRELLTEFGYKGEETPII------VGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             ----HHHHHHHTTSCTTTSCEE------ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHhCCCcccCEEE------EEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence                6666665542     122      2344443          577788877766553

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.76  E-value=1.6e-18  Score=132.19  Aligned_cols=163  Identities=18%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      ++.++..+|+++|++|||||||+|+|.+..+....     ++....... ....+..+.++|+||...           +
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~-i~~~~~~~~i~d~~g~~~-----------~   73 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKS-VQSQGFKLNVWDIGGQRK-----------I   73 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEE-EEETTEEEEEEECSSCGG-----------G
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEE-eccCCeeEeEeecccccc-----------c
Confidence            45556799999999999999999999887652221     111111222 235677899999999442           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ......++..+|++++|+|++...+..+. ..+..+..... ....|++||+||+|....  .......+.     +.  
T Consensus        74 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~--  143 (176)
T d1fzqa_          74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN--  143 (176)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred             hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH--
Confidence            22333445778999999999844333331 22222221111 112499999999998765  333322221     10  


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ......+...+   .++||+.+.|+++++++|.+
T Consensus       144 ~~~~~~~~~~~---~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         144 LHTIRDRVWQI---QSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             GGGCCSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhcCCEE---EEEeCCCCCCHHHHHHHHHh
Confidence            01112221111   24688899999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=130.09  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++.+++..+....  ....+......... ..+.  .+.+|||||..           ++....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~--~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e-----------~~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceEEEEEEE-ECCEEEEEEEEECCCch-----------hhHHHH
Confidence            78999999999999999999976542222  12222232222222 3443  47799999932           234445


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.+++++++|+|++.+.+... ..++..+.......  .|++||.||+|.........++         .+.+....
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~~~v~~~~---------~~~~~~~~  140 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSEAQ  140 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHHHH
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccccchhhhH---------HHHHHHhC
Confidence            567889999999999983322222 33444444433333  3899999999965431111111         33344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHH-HHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN-SVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~-~~~~~  210 (277)
                      +..++      ++||+.+.|+++++..|. +++.+
T Consensus       141 ~~~~~------~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         141 DMYYL------ETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             TCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCEEE------EEccCCCCCHHHHHHHHHHHHHHh
Confidence            54443      468889999999977554 45543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=4.9e-18  Score=129.35  Aligned_cols=164  Identities=18%  Similarity=0.114  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+++|++|||||||++.+++...........+.+...............+.+|||||...           .......
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHHH
Confidence            68999999999999999999876643332222222222222211111223578999999432           3333445


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ++..++++++|+|++...+... ..++..+.......  ...|++||+||+|..... ..+..       ...+++....
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~-~~v~~-------~~~~~~~~~~  143 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSE-------KSAQELAKSL  143 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCH-------HHHHHHHHHT
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhh-cchhH-------HHHHHHHHHc
Confidence            6788999999999984333222 33444444433321  234899999999976431 10110       0133444555


Q ss_pred             CC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +. .++      ++||+.+.|+++++..|.+.+
T Consensus       144 ~~~~~~------e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         144 GDIPLF------LTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             TSCCEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCeEE------EEeCCCCcCHHHHHHHHHHHH
Confidence            43 343      568889999999998886644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=3e-18  Score=135.95  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-----------------EeeeCCceEEEEeCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------------TVLKDGQVVNVIDTPGLFDL   82 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-----------------~~~~~~~~~~liDtpG~~~~   82 (277)
                      +.|+|+|++++|||||+|+|++.......  ..+.+.......                 ...+.+..+.++||||+.+.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            45999999999999999999864321110  011111111100                 11245667999999997654


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..           ....+...+|++++|+|+..+++..+...+.++... +.    |++|++||+|....
T Consensus        84 ~~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~iivlNK~D~~~~  137 (227)
T d1g7sa4          84 TT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIHG  137 (227)
T ss_dssp             TT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSTT
T ss_pred             cc-----------cchhcccccceEEEEEecccCcccchhHHHHHhhcC-CC----eEEEEEECccCCCc
Confidence            32           112244668999999999988999999988888874 33    89999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7e-18  Score=127.64  Aligned_cols=158  Identities=22%  Similarity=0.145  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++.+.+..... ..    ++....+......++  ..+.+|||||...           +....
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~----~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~-----------~~~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EA----EAAGHTYDRSIVVDGEEASLMVYDIWEQDG-----------GRWLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC--------------CEEEEEEEEETTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cC----Ceeeeeecceeeccccccceeeeecccccc-----------cceec
Confidence            589999999999999999999865421 11    111111111222344  3578999999543           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++.+.+... ..++..+....+ ....|+++|.||+|..........+         .+.+....
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~~~~~  135 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF  135 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhcchhHHH---------HHHHHHhc
Confidence            335678899999999984333333 233344444322 2234899999999975431011111         23344455


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      ++||+.+.++.+++..|.+.+.
T Consensus       136 ~~~~~------e~Sak~~~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         136 DCKFI------ETSAALHHNVQALFEGVVRQIR  162 (168)
T ss_dssp             TSEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEE------EEeCCCCcCHHHHHHHHHHHHH
Confidence            55554      4688899999999998876543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=1.6e-17  Score=129.74  Aligned_cols=173  Identities=16%  Similarity=0.160  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEE--------------------------
Q 023779           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT--------------------------   62 (277)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~--------------------------   62 (277)
                      |+-..|+   ++|+++|+.++|||||+++|++....... ......+.......                          
T Consensus         2 ~~~~~p~---ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (205)
T d2qn6a3           2 WPKVQPE---VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS   78 (205)
T ss_dssp             CCCCCCC---EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred             CCCCCCC---eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeee
Confidence            5444454   89999999999999999999974321100 00000000000000                          


Q ss_pred             -EeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcE
Q 023779           63 -TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYM  140 (277)
Q Consensus        63 -~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~  140 (277)
                       ......+.+.++||||..           .+......+...+|++++|+|+..++ ....+..+..+.. ++..   |+
T Consensus        79 ~~~~~~~r~~~iiD~PGH~-----------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~---~i  143 (205)
T d2qn6a3          79 DDEPKFLRRISFIDAPGHE-----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVK---NL  143 (205)
T ss_dssp             CSCCEEEEEEEEEECSCHH-----------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CE
T ss_pred             eccccceEEEEEeccchHH-----------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCc---ee
Confidence             000112468999999933           45455555567889999999999776 5555666666555 3432   89


Q ss_pred             EEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       141 ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +|++||+|....  .........     ...++.......+   +..+.||..+.|+++|++.|...++.
T Consensus       144 IV~vNK~Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~---p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         144 IIVQNKVDVVSK--EEALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             EEEEECGGGSCH--HHHHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eeccccCCCccc--hHHHHHHHH-----HHHHhccccCCCC---eEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            999999998765  333332222     4444443332111   11356889999999999999887653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.9e-18  Score=127.95  Aligned_cols=159  Identities=17%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++++++........  .+.+........ ..++  ..+.+|||||....           ....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~-----------~~~~   66 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTM-YLEDRTIRLQLWDTAGQERF-----------RSLI   66 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEE-ECSSCEEEEEEEEECCSGGG-----------GGGH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeeeccceee-ccCCCceeeeecccCCcchh-----------ccch
Confidence            379999999999999999999766432222  222222222222 2333  45789999995431           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|+..+.+... ..++..+.......+  |+++|.||+|.........++         ...+....
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~  135 (164)
T d1yzqa1          67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAKEL  135 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhhhhhhHHH---------HHHHHHHc
Confidence            234567899999999984333332 344445555454444  899999999975431122211         33444555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +..++      ++||+.+.+++++++.|.+.++
T Consensus       136 ~~~~~------e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         136 NVMFI------ETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHHSC
T ss_pred             CCEEE------EecCCCCcCHHHHHHHHHHhhC
Confidence            55554      5788999999999999988764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.75  E-value=1.7e-18  Score=139.39  Aligned_cols=214  Identities=20%  Similarity=0.194  Sum_probs=132.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh---CCCCc----cccCC---------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSIL---GRKAF----KASAG---------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~---~~~~~----~~~~~---------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (277)
                      ++|+|+|+.|+|||||+.+|+   |....    ..+..         ..+.|......... |+++.++++||||+.++ 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~-~~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc-ccccceeEEccCchhhh-
Confidence            679999999999999999985   21110    00100         12345555555554 89999999999998874 


Q ss_pred             CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~  163 (277)
                            ..+....+..+    |+.++|+|+..+........++.+.+. +.    |.++++||+|.. .   .....+. 
T Consensus        81 ------~~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~-~~----p~~i~iNk~D~~-~---~~~~~l~-  140 (267)
T d2dy1a2          81 ------VGEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG-G---DYYALLE-  140 (267)
T ss_dssp             ------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC-C---CHHHHHH-
T ss_pred             ------hhhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhc-cc----cccccccccccc-c---cchhhhh-
Confidence                  34566666655    999999999999999999998888874 33    899999999964 2   2223332 


Q ss_pred             cCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh-hcC----CCCCChHHHHHHHHHHHHHHHHHHHH
Q 023779          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV-QNG----GQPYTDELKRGATELRDKKAEVDSLK  238 (277)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                             .+.+..+ ...++.-+....    .++..+++.+..... ...    ....+.++....+++  +++.++.+.
T Consensus       141 -------~~~~~lg-~~vp~~~Pi~~~----~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~--r~~L~E~va  206 (267)
T d2dy1a2         141 -------DLRSTLG-PILPIDLPLYEG----GKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRF--RQEVLEAIV  206 (267)
T ss_dssp             -------HHHHHHC-SEEECEEEEEET----TEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHH--HHHHHHHHH
T ss_pred             -------hHHHHhc-cCcCeEeeeccC----CceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHH--HHHHHHHHH
Confidence                   3334444 233322211110    000011111100000 000    112456666666666  566777778


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779          239 EYSKREISKLMGQMQESYEDRIKRMAEMRAG  269 (277)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
                      +.+++.++++.+..+-..++..+.+.+.+.+
T Consensus       207 e~Dd~Lle~yle~~~l~~eel~~~l~~ai~~  237 (267)
T d2dy1a2         207 ETDEGLLEKYLEGEEVTGEALEKAFHEAVRR  237 (267)
T ss_dssp             TTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHhCCCcccHHHHHHHHHHHHHc
Confidence            8888888888887777776766777666654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.74  E-value=8.5e-18  Score=126.65  Aligned_cols=158  Identities=14%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .++|+++|++|||||||++.|.+..+...    ..+|........ ..++..+.+||+||..           .+.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~-~~~~~~~~i~D~~G~~-----------~~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKI-TKGNVTIKLWDIGGQP-----------RFRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEE-EETTEEEEEEEECCSH-----------HHHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeee-eeeeEEEEEeeccccc-----------ccccccc
Confidence            37999999999999999999987664322    123333333333 3677889999999932           2222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .++..+|++++|+|+....+..+  ..+...+.......  .|++||+||.|....  ....+..+.     +.  ...+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~  134 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSAI  134 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhhcccC--CcEEEEEeccccchh--hhHHHHHHH-----HH--HHHH
Confidence            34567899999999984333222  12222222222222  499999999997654  333333222     10  0111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      ..+...+   .+.|+..+.|+.+++++|.+
T Consensus       135 ~~~~~~~---~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         135 QDREICC---YSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             CSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred             HhCCCEE---EEEeCcCCcCHHHHHHHHHH
Confidence            1111111   24578888999999988765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.9e-17  Score=128.85  Aligned_cols=137  Identities=15%  Similarity=0.197  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC------C-------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAF--KASA------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~------~-------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~   83 (277)
                      .++|+++|+.++|||||+++|+.....  ..+.      .       ..+.|......... ++++.+.|+||||+.++ 
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~-~~~~~i~iiDtPGh~df-   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY-   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG-
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE-eCCeEEEEEeCCCchhh-
Confidence            489999999999999999999621100  0000      0       01556666655554 78999999999997763 


Q ss_pred             CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (277)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~  163 (277)
                            ..++...+    ..+|++|+|+|+..++...+.+.+..+... +-   ++++|++||+|....+ ..++.+...
T Consensus        81 ------~~~~~~~~----~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~~~-~~~~~~~~~  145 (204)
T d2c78a3          81 ------IKNMITGA----AQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVDDP-ELLDLVEME  145 (204)
T ss_dssp             ------HHHHHHHH----TTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCCCH-HHHHHHHHH
T ss_pred             ------HHHHHHHH----HHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCCCH-HHHHHHHHH
Confidence                  23444443    456999999999989999888888888775 42   1578889999987541 335555554


Q ss_pred             cCCchHHHHHhhcC
Q 023779          164 ECPKPLKEILQLCD  177 (277)
Q Consensus       164 ~~~~~~~~~~~~~~  177 (277)
                           ++.++...+
T Consensus       146 -----i~~~l~~~~  154 (204)
T d2c78a3         146 -----VRDLLNQYE  154 (204)
T ss_dssp             -----HHHHHHHTT
T ss_pred             -----HHHHHHhcC
Confidence                 666555433

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-18  Score=129.15  Aligned_cols=156  Identities=16%  Similarity=0.080  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEE-eeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+|+++|++|||||||++++++..+....    .+|........ ...++  ..+.+|||||.           ..+...
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~----~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~-----------~~~~~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLVFHTNRGPIKFNVWDTAGQ-----------EKFGGL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCE----EEETTEEEEEEEECBTTCCEEEEEEECTTH-----------HHHSSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc----ccceeccccccccccccccccccccccccc-----------ccccee
Confidence            68999999999999999999876642221    22222222111 11233  46899999992           223333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+-+... ..++..+..... +  .|+++|+||+|....  ....    .     .......
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~--~~~~----~-----~~~~~~~  134 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA----K-----SIVFHRK  134 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-S--CCEEEEEECCCCSCS--CCTT----T-----SHHHHSS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccC-C--Cceeeecchhhhhhh--hhhh----H-----HHHHHHH
Confidence            3456788999999999984433222 334444444433 2  399999999997654  1111    1     2233333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+.+++      ++||+.+.++.+++..|.+.+..
T Consensus       135 ~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         135 KNLQYY------DISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             CSSEEE------EEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHHcc
Confidence            344443      46888899999999988876644

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-17  Score=126.06  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|||||||++++++........  ...+........ ..++.  .+.+|||||....           ....
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~i~D~~g~~~~-----------~~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRII-EVSGQKIKLQIWDTAGQERF-----------RAVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEE-EETTEEEEEEEEECTTGGGT-----------CHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccccceeEEE-EECCEEEEEEEeccCCchhH-----------HHHH
Confidence            789999999999999999998766432222  222222222222 24444  5889999995431           1112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|+++.-+... ..++..+.......  .|++++.||+|.........+         ....+.+..
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~---------~~~~~~~~~  139 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE---------EAKQFAEEN  139 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccHHH---------HHHHHHHHc
Confidence            223456799999999983322211 24444555544433  389999999996543111111         133444555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +.+++      ++||+.+.|+.+++..|.+.+
T Consensus       140 ~~~~~------e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         140 GLLFL------EASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence            55554      478889999999998886653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.9e-18  Score=130.24  Aligned_cols=156  Identities=19%  Similarity=0.162  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|++|||||||+|++++........+..+..  ..... ....+  ..+.+|||||........           
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~--~~~~~-~~~~~~~~~~~i~d~~g~~~~~~~~-----------   68 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQ-IQVNDEDVRLMLWDTAGQEEFDAIT-----------   68 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS--EEEEE-EEETTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc--cceee-eeecCceeeeeeeccCCccchhhhh-----------
Confidence            789999999999999999998655422221111111  11111 12333  357899999966432211           


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|++.+-+... ..++..+.+..+.   .|+++|+||+|....  ..+..       ...+.+.+..
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~--~~v~~-------~~~~~~~~~~  136 (164)
T d1z2aa1          69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDD--SCIKN-------EEAEGLAKRL  136 (164)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGG--CSSCH-------HHHHHHHHHH
T ss_pred             hhhhccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccc--eeeee-------hhhHHHHHHc
Confidence            123467799999999984332222 2344555554443   389999999997644  11110       0133444555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      +..++      ++||+.+.|++++++.|.+.
T Consensus       137 ~~~~~------e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         137 KLRFY------RTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             TCEEE------ECBTTTTBSSHHHHHHHHHH
T ss_pred             CCEEE------EeccCCCcCHHHHHHHHHHH
Confidence            55554      56888999999999887554

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=127.28  Aligned_cols=164  Identities=19%  Similarity=0.176  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|||||||++.+++..+....    .+|...........++.  .+.+|||+|...           +....
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGLED-----------YDRLR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTTG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCc----CCceeeeccccccccccceeeeccccCccch-----------hcccc
Confidence            68999999999999999999876643221    12222222211223333  588999999543           22334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-C-CchHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-C-PKPLK  170 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~-~~~~~  170 (277)
                      ..++.++|++++|+|++.+-+...  ..+...+... ..+.  |++||.||+|....  .........   . . ....+
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~~  142 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNV--PIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR  142 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHHH
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCC--ceEEeeecccccch--hhHHHHHHHhhcccccHHHHH
Confidence            556789999999999984322222  2334444443 3343  99999999998755  222211110   0 0 01234


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+....+...+.     ++||+.+.|++++++.+.+.+
T Consensus       143 ~~a~~~~~~~~~-----E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         143 DMANRIGAFGYM-----ECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence            454555543232     578899999999999887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=127.46  Aligned_cols=159  Identities=16%  Similarity=0.087  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|.+|||||||++++++........ +. .......... ..+  ...+.+|||||..           ++...
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~-~t-~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-----------~~~~~   70 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN-HT-IGVEFGSKII-NVGGKYVKLQIWDTAGQE-----------RFRSV   70 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCC-CC-SEEEEEEEEE-EETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccc-cc-cccceeeEEE-EecCcceeEEEEECCCch-----------hhhhh
Confidence            3789999999999999999998665422211 11 1111111111 122  2358899999944           23344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..++++++|+|.+..-+... ..++..+.......  .|+++|.||+|..... ......        ...+...
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~~-~~~~~~--------~~~~~~~  139 (174)
T d2bmea1          71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADR-EVTFLE--------ASRFAQE  139 (174)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGC-CSCHHH--------HHHHHHH
T ss_pred             HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccchh-chhhhH--------HHHHHHh
Confidence            4556789999999999983222221 23333344444433  3999999999965431 111111        2233344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      ++|++.+.++++++..+.+.+
T Consensus       140 ~~~~~~------e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         140 NELMFL------ETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEE------EeeCCCCcCHHHHHHHHHHHH
Confidence            444444      568888899999998876654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=126.81  Aligned_cols=159  Identities=16%  Similarity=0.138  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+++|++|||||||++++++.......     +|...... ........+.+|||||...           ....
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~-~~~~~~~~~~i~D~~g~~~-----------~~~~   72 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVE-TVTYKNVKFNVWDVGGQDK-----------IRPL   72 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEE-EEEETTEEEEEEEESCCGG-----------GHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEE-EeeccceeeEEecCCCcch-----------hhhH
Confidence            45689999999999999999999876542221     22222222 2335677899999999553           2344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..++++++|+|++..-+...  ...++......  ....|++||+||+|....  ....+....     +.  +.
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~--~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~-----~~--~~  141 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEK-----LG--LT  141 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred             HHhhhcccceEEEEEecccchhHHH--HHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHH-----HH--HH
Confidence            4557889999999999983222222  21223222211  122499999999997654  222222211     00  11


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .+.. .+..    .++||+.+.|+.+++++|.+.
T Consensus       142 ~~~~~~~~~----~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         142 RIRDRNWYV----QPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             GCCSSCEEE----EECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHhCCCEE----EEeeCCCCcCHHHHHHHHHHh
Confidence            2222 2222    267899999999999998764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.74  E-value=7.5e-18  Score=130.60  Aligned_cols=166  Identities=13%  Similarity=0.157  Sum_probs=102.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEE----------------------EeeeCCceEEEEe
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT----------------------TVLKDGQVVNVID   75 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~----------------------~~~~~~~~~~liD   75 (277)
                      ..+|+++|+.++|||||+|+|+|...... .....+.|.......                      ........+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            47899999999999999999997432110 000111221111110                      0111234589999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc
Q 023779           76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (277)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~  154 (277)
                      |||.           ..+..........+|++++|+|+..+. .......+..+... +..   ++++++||+|....  
T Consensus        85 tPGh-----------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~--  147 (195)
T d1kk1a3          85 APGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK--  147 (195)
T ss_dssp             CSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--
T ss_pred             cchh-----------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh--
Confidence            9993           345555555556779999999999554 44455666666554 432   68899999998765  


Q ss_pred             ccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .........     +.+++..+......   ..+.||..+.|+++|++.|...+|
T Consensus       148 ~~~~~~~~~-----~~~~~~~~~~~~~~---iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         148 EKALENYRQ-----IKEFIEGTVAENAP---IIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHH-----HHHHhccccCCCCe---EEEEECCCCCCHHHHHHHHHHHCc
Confidence            333333333     55555554421111   125688999999999999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.9e-18  Score=127.40  Aligned_cols=161  Identities=18%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|.+|||||||++++++..+...    ..+|...........++.  .+.+|||+|....           ...
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~----~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----------~~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISCDKSICTLQITDTTGSHQF-----------PAM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC-----------HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCc----cCcceeeccccceeeccccceeccccccccccc-----------ccc
Confidence            47899999999999999999997664222    122333322223334554  4678999996642           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+-+... ..++..+.+..+.....|++||+||+|.........++         .+.+...
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e---------~~~~~~~  137 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE---------AEALART  137 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHH---------HHHHHHH
Confidence            1223445699999999983322222 34444455444433345999999999965431011111         3334455


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      ++||+.+.+++++++.|.+++.
T Consensus       138 ~~~~~~------e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         138 WKCAFM------ETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             HTCEEE------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cCCeEE------EEcCCCCcCHHHHHHHHHHHHH
Confidence            555544      5688899999999998877653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-17  Score=125.36  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||++.+++..+.....+..  .......... .++  ..+.+|||+|...           .....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~--~~~~~~~~~~-~~~~~~~~~~~d~~g~~~-----------~~~~~   69 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--GASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHALG   69 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC--SCEEEEEEEE-SSSCEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccchheeeec-cCCccceeeeeccCCcce-----------ecccc
Confidence            689999999999999999998766432222111  1122221111 233  4588999999543           33334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++.+-+... ..++..+.......  .|++||.||+|.........++         .+.+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~~e---------~~~~a~~~  138 (167)
T d1z08a1          70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAESV  138 (167)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred             hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccccccchHH---------HHHHHHHc
Confidence            556889999999999984333222 23444444443333  3888999999965431111111         34455555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      ++||+.+.|+++++..|.+.+
T Consensus       139 ~~~~~------e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         139 GAKHY------HTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             TCEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEE------EEecCCCcCHHHHHHHHHHHH
Confidence            55554      568888999999999887655

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.9e-18  Score=128.39  Aligned_cols=159  Identities=21%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-EeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      ..+|+|+|.+|||||||++.+++..+....    ..|....... ....+.  ..+.+|||+|....           ..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~   68 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNI----NPTIGASFMTKTVQYQNELHKFLIWDTAGLERF-----------RA   68 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCccc----ccccccccccccccccccccceeeeecCCchhh-----------hH
Confidence            479999999999999999999976643221    1122111111 111222  34679999995532           11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++.++|++++|+|++.+-+... ..++..+.......  .|+++|+||+|.........+         ..+.+..
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~---------~~~~~~~  137 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER---------DAKDYAD  137 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccccchhHH---------HHHHHHH
Confidence            12224567899999999983322222 23333444444443  499999999997543111111         1344555


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      ..+..++      ++||+.+.|+++++..|.+.++
T Consensus       138 ~~~~~~~------e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         138 SIHAIFV------ETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             HTTCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred             HcCCEEE------EEecCCCCCHHHHHHHHHHhCC
Confidence            5555544      5788999999999998877653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.73  E-value=8.4e-18  Score=128.87  Aligned_cols=164  Identities=16%  Similarity=0.123  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ...+..+|+++|.+|||||||++.|.+.......     +|....... ....+..+.+|||||....           .
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~-~~~~~~~~~i~D~~g~~~~-----------~   75 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVET-LSYKNLKLNVWDLGGQTSI-----------R   75 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEE-EEETTEEEEEEEEC----C-----------C
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEE-EeeCCEEEEEEeccccccc-----------c
Confidence            4456799999999999999999999876653222     122222222 2357788999999995432           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      .....++..+|++++|+|++.+.+..+.  ..++......  ....|++||.||+|....  ....+....     +.  
T Consensus        76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~--~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-----~~--  144 (182)
T d1moza_          76 PYWRCYYADTAAVIFVVDSTDKDRMSTA--SKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-----LN--  144 (182)
T ss_dssp             TTGGGTTTTEEEEEEEEETTCTTTHHHH--HHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred             hhHHhhhccceeEEEEeeecccccchhH--HHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHH-----HH--
Confidence            2333457789999999999855544432  1233222211  122499999999997654  233332221     00  


Q ss_pred             HhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..... .+..    .++||+.+.|+.+++++|.+.+.+
T Consensus       145 ~~~~~~~~~~~----~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         145 LVELKDRSWSI----VASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             TTTCCSSCEEE----EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCEE----EEEECCCCCCHHHHHHHHHHHHHH
Confidence            011111 2211    357899999999999999887754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6e-18  Score=128.26  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|||||||++.+++..+........+  ........ ...+  ..+.+|||||...           +....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~--~~~~~~~~-~~~~~~~~~~~~d~~g~~~-----------~~~~~   72 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--AAFLTQTV-CLDDTTVKFEIWDTAGQER-----------YHSLA   72 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEE-EETTEEEEEEEEEECCSGG-----------GGGGH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--ccccccee-eccceEEEEEeccCCCchh-----------hhhhH
Confidence            6899999999999999999996654322221111  22211111 1233  3588999999543           12222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|.+...+... ..++..+......+.  |++||.||+|.........+.         .+.+....
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~v~~e~---------~~~~~~~~  141 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDN  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccccccccHHH---------HHHHHHhc
Confidence            234578899999999983322222 344444555445444  899999999965431111111         33444444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +.+++      ++||+.+.++++++..|.+.+.
T Consensus       142 ~~~~~------e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         142 SLLFM------ETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CCEEE------EeeCCCCCCHHHHHHHHHHHHh
Confidence            55554      5788899999999999876554

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-16  Score=118.24  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=99.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .++|+|+|++|||||||++++++..+...    ..+|....+......++.  .+.+|||+|.......           
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~-----------   68 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQFVDS----YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-----------   68 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSC----CCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-----------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCcc----cCcceecccceEEecCcEEEEeeecccccccccccc-----------
Confidence            47999999999999999999986554222    122322222222234554  4778999997653321           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+-+... ..++..+....+.. ..|+++|+||+|.........++         .+.+...
T Consensus        69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~---------~~~~a~~  138 (167)
T d1xtqa1          69 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEE---------GKALAES  138 (167)
T ss_dssp             CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             cchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHH---------HHHHHHH
Confidence            1235678899999999984333322 23444455444432 23899999999965431111221         2334445


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..|+      ++||+.+.++++++..|...+
T Consensus       139 ~~~~~~------e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         139 WNAAFL------ESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             HTCEEE------ECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEecCCCCCHHHHHHHHHHHh
Confidence            455554      468999999999998876543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2e-17  Score=141.56  Aligned_cols=174  Identities=18%  Similarity=0.118  Sum_probs=105.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ..++|+|+|.+|+|||||+|+|+|......+....+   +|.....+  .......++||||||++......+....   
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~~~l~DtPG~~~~~~~~~~~~~---  129 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVFWDLPGIGSTNFPPDTYLE---  129 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTTEEEEECCCGGGSSCCHHHHHH---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCeEEEEeCCCcccccccHHHHHH---
Confidence            358999999999999999999999765444432222   23333222  2245667999999999876544333221   


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc-------cccHHHHhcccCCc
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-------EKTLEDFLGHECPK  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~-------~~~l~~~l~~~~~~  167 (277)
                       .  ......|+++++.+  .+++..+...+..+.+. +.    |+++|+||+|.....       ....+..+.. ...
T Consensus       130 -~--~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~k----~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~  198 (400)
T d1tq4a_         130 -K--MKFYEYDFFIIISA--TRFKKNDIDIAKAISMM-KK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRL  198 (400)
T ss_dssp             -H--TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-TC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHH
T ss_pred             -H--hhhhcceEEEEecC--CCCCHHHHHHHHHHHHc-CC----CEEEEEeCcccccchhhhcccccccHHHHHHH-HHH
Confidence             1  12345688888766  37888888888888774 43    899999999964210       0011122221 000


Q ss_pred             hHHHHHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779          168 PLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (277)
Q Consensus       168 ~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~  211 (277)
                      .....+...   ..+++.+.....    ...+++.|.+.+.+.++..
T Consensus       199 ~~~~~l~~~~~~~~~vflvS~~~~----~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         199 NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHcCCCCCCEEEecCCcc----cccCHHHHHHHHHHHhHHH
Confidence            123333332   245555544322    2367899999998887653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-16  Score=121.59  Aligned_cols=162  Identities=17%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      .+..+|+|+|.+|||||||++.+++..+. ....   +|...........++.  .+.+|||+|.......       ..
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~~---~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-------~~   72 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYD---PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-------RE   72 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCC---TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-------HH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCC-cccc---cccccceeeEeccCCeeeeeeccccccccccccc-------cc
Confidence            34589999999999999999999866542 2211   1211111122224544  4778999997754321       11


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~  172 (277)
                      ..    +..+|++++|+|++...+... ..++..+....+ ..  .|++||.||+|.........+         ....+
T Consensus        73 ~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~p~ilvgnK~Dl~~~~~~~~~---------~~~~~  137 (173)
T d2fn4a1          73 QY----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQRQVPRS---------EASAF  137 (173)
T ss_dssp             HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGGCCSCHH---------HHHHH
T ss_pred             hh----hccceeeeeecccccccccchhhhhhHHHHHHhccCC--CceEEEEEeechhhccccchh---------hhhHH
Confidence            11    234599999999984333322 233343443332 23  389999999996533101111         13344


Q ss_pred             HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ....+..++      .+||+.+.|++++++.+.+.+..
T Consensus       138 ~~~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         138 GASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             HHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence            455555544      56888999999999999887754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.1e-17  Score=127.89  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      -.+|+|+|++|||||||++.+++...........+.+  .....+. ..+  ..+.+|||||......           .
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~--~~~~~i~-~~~~~~~l~i~Dt~G~e~~~~-----------~   71 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD--FKIKTVE-LDGKTVKLQIWDTAGQERFRT-----------I   71 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC--EEEEEEE-ETTEEEEEEEECCTTTTTTTC-----------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCcccee--EEEEEEE-EeeEEEEEEEEECCCchhhHH-----------H
Confidence            3789999999999999999998665422222112222  2222222 233  3588999999654321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++..+|++++|+|++.+.+... ..++..+.......  .|++||.||.|.........+.         ...+...
T Consensus        72 ~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~  140 (194)
T d2bcgy1          72 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFADA  140 (194)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred             HHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccchhHHH---------Hhhhhhc
Confidence            2335678899999999983322222 23333444443333  3999999999976541111111         2223333


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..++      .+||+.+.++.++++.+.+.+..
T Consensus       141 ~~~~~~------e~SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         141 NKMPFL------ETSALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             TTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCcceE------EEecCcCccHHHHHHHHHHHHHH
Confidence            344444      46888899999999988776654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.8e-17  Score=123.78  Aligned_cols=160  Identities=17%  Similarity=0.142  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||++.+++...... ............... ...+.  .+.+|||||...           +...
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~i~Dt~G~e~-----------~~~~   72 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVL-DVDGVKVKLQMWDTAGQER-----------FRSV   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEE-EETTEEEEEEEEECCCC-----------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEE-EecCcEEEEEEEECCCchh-----------hHHH
Confidence            37899999999999999999886553222 212222222222222 23444  578999999543           2333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+.++|++++|+|.+.+-+... ..++..+.......  .|+++|.||+|.........++         ...+...
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~~~---------~~~~~~~  141 (170)
T d2g6ba1          73 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAKE  141 (170)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHHH
T ss_pred             HHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccHHH---------HHHHHHH
Confidence            3445678899999999983322222 22222333333333  4899999999977551111211         3344455


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+.+++      ++|++.+.|+++++..|.+.+
T Consensus       142 ~~~~~~------e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         142 YGLPFM------ETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             HTCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEE------EEeCCCCcCHHHHHHHHHHHc
Confidence            565555      468888899999999887655

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=127.32  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|++|||||||++++++.........  +.+........ ..++.  .+.+|||||......           ..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~d~~g~e~~~~-----------~~   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSI-QVDGKTIKAQIWDTAGQERYRR-----------IT   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---C--CCSCEEEEEEE-EETTEEEEEEEEECSSGGGTTC-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccceeeeEEE-EECCEEEEEEecccCCcHHHHH-----------HH
Confidence            7899999999999999999987665333222  22222222222 23443  578999999543211           11


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|.+.+-+... ..++..+...+...+  |++||.||+|.........+ .        ........
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~~~~~~~-~--------~~~~~~~~  139 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHLRAVPTD-E--------ARAFAEKN  139 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccccccchHH-H--------HHHhhccc
Confidence            122467799999999983322222 345555666555544  99999999996543111111 1        22233444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      ++|++.+.|++++++.+...+
T Consensus       140 ~~~~~------e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         140 NLSFI------ETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEE------EEecCCCcCHHHHHHHHHHHH
Confidence            45554      467888899999887765543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5.5e-17  Score=123.74  Aligned_cols=163  Identities=18%  Similarity=0.228  Sum_probs=102.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ...|+|+|.+|||||||+|+|+|.....  .+....|+..............+.++|+||....     . .........
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~   76 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME-----E-KRAINRLMN   76 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH-----H-HHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceec-----c-hhhhhhhhh
Confidence            3579999999999999999999987532  2233444444444445567778889999997631     1 111122211


Q ss_pred             ----hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           99 ----MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        99 ----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                          .....+++++++.|.+ +...........+.+   ..  .|.++|+||+|..... ..+...        ...+..
T Consensus        77 ~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~---~~--~~~i~v~~k~d~~~~~-~~~~~~--------~~~~~~  141 (179)
T d1egaa1          77 KAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRE---GK--APVILAVNKVDNVQEK-ADLLPH--------LQFLAS  141 (179)
T ss_dssp             CCTTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHS---SS--SCEEEEEESTTTCCCH-HHHHHH--------HHHHHT
T ss_pred             hccccchhhcceeEEEEecC-ccchhHHHHHHHhhh---cc--Cceeeeeeeeeccchh-hhhhhH--------hhhhhh
Confidence                2235678888999887 544444444444432   12  3789999999977651 112221        223333


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+. .++      +.||+.+.|+++|++.|.+.+++
T Consensus       142 ~~~~~~~~------~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         142 QMNFLDIV------PISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TSCCSEEE------ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             hcCCCCEE------EEeCcCCCCHHHHHHHHHHhCCC
Confidence            3342 222      45888999999999999998866

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.1e-17  Score=122.20  Aligned_cols=160  Identities=18%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|++|||||||++++++..+.....    +|...........++.  .+.+||++|....           ...
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----------~~~   67 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-----------ASM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCC-----------HHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccC----CceeeeeeeeeecCcceEeeccccCCCcccc-----------ccc
Confidence            4799999999999999999999766433221    1221112222223443  5788999996542           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...++.++|++++|+|++.+-+... ..++..+..... ....|++||+||+|.........++         ...+...
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAEE  137 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHHH---------HHHHHHH
Confidence            1223345699999999984333322 223333333222 2234899999999965431111111         2233344


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      .+..++      ++||+.+.|+++++..|.+.+.
T Consensus       138 ~~~~~~------e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         138 WGCPFM------ETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HTSCEE------EECTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEE------EECCCCCcCHHHHHHHHHHHHc
Confidence            444444      5688999999999999877654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1e-17  Score=127.39  Aligned_cols=159  Identities=14%  Similarity=0.133  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||+++|++..+.....  .+.+......... .++.  .+.+|||||...           +....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~e~-----------~~~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIE-LDGKRIKLQIWDTAGQER-----------FRTIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEE-ETTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEE-ECCEEEEEEEEECCCchh-----------hHHHH
Confidence            689999999999999999998765422211  1122222222222 3443  467899999442           33333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++.++|++++|+|++.+.+... ..++..+......+  .|+++|.||.|.........++         ...+....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~~~---------~~~~~~~~  141 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLALDY  141 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHHHH
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHHHH---------HHHHHHhc
Confidence            456788999999999984433333 23344454444443  3899999999977541111111         22233444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +.+++      .+|++.+.++.+++..|.+.+.
T Consensus       142 ~~~~~------e~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         142 GIKFM------ETSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             TCEEE------ECCC---CCHHHHHHHHHHHHH
T ss_pred             CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            55655      4688888999999988877654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.4e-16  Score=119.91  Aligned_cols=177  Identities=13%  Similarity=0.187  Sum_probs=101.7

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (277)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~   93 (277)
                      .|.++.++|+|+|.+|||||||+|+|++........ ..+ ++...........+......++++...............
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTP-GRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccc-cceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            345677999999999999999999999876533221 122 222222222224555555555555444333333322223


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (277)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~  173 (277)
                      .............++.+.+............+..+... ..    ++++++||+|....  ......+..     +++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l  156 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-NI----AVLVLLTKADKLAS--GARKAQLNM-----VREAV  156 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-cc----cccchhhhhhccCH--HHHHHHHHH-----HHHHH
Confidence            32222233455667777777766666666666665553 22    79999999998876  555555444     55555


Q ss_pred             hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .......-+    ...||+++.|+++|++.|.+++
T Consensus       157 ~~~~~~~~~----i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         157 LAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GGGCSCEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhhCCCCcE----EEEeCCCCCCHHHHHHHHHHHh
Confidence            544432211    2458899999999999998876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=123.50  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|||||||+|++++........    ++............+  ..+.+||+||....           ....
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~   68 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAMR   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEEETTEEEEEEEEEECCCGGG-----------HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccC----CccceeeccceeeeceeeeeeeeeccCcccc-----------ccch
Confidence            789999999999999999999766432221    222222221222333  34789999996541           1111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..++++++|+|++.+.+... ..++..+....+. ...|+++|.||+|....  ....+.        .+.+....
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~~  137 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVESRQ--------AQDLARSY  137 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCC--CSCHHH--------HHHHHHHH
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEecccccccc--cccHHH--------HHHHHHHh
Confidence            222345699999999984332222 3444555544332 12489999999997644  111111        23344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ++|++.+.|+.+++..|.+.+.+
T Consensus       138 ~~~~~------e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         138 GIPYI------ETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TCCEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCeEE------EEcCCCCcCHHHHHHHHHHHHHh
Confidence            54544      56889999999999999877654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.6e-17  Score=124.14  Aligned_cols=168  Identities=19%  Similarity=0.107  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~   92 (277)
                      |....++|+|+|.+|||||||++.++...+. ....   +|............+  ..+.+|||||....          
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~---~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~----------   70 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYV---PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------   70 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCC---CSSCCCEEEEEESSSCEEEEEEECCCCSSSS----------
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCC-CcCC---CceeeeeeEEEeeCCceEEeecccccccchh----------
Confidence            3344589999999999999999999875542 2211   122111111122333  34789999996542          


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC-----
Q 023779           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----  165 (277)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~-----  165 (277)
                       ......++..+|++++|+|++++-+...  ..+...+... ....  |+++|.||+|....  ...........     
T Consensus        71 -~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~--~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~  144 (185)
T d2atxa1          71 -DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNV--PFLLIGTQIDLRDD--PKTLARLNDMKEKPIC  144 (185)
T ss_dssp             -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTC--CEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred             -hhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCC--CeeEeeeccccccc--hhhhhhhhhccccccc
Confidence             2223346788999999999984333222  2333444443 3333  89999999997765  22222211100     


Q ss_pred             CchHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          166 PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       166 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .....++....+. .|+      ++||+.+.|++++++.+.+.+
T Consensus       145 ~~~~~~~a~~~~~~~~~------E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         145 VEQGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEE------EecCCCCcCHHHHHHHHHHHH
Confidence            0112334444443 333      578899999999998876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-17  Score=126.05  Aligned_cols=158  Identities=15%  Similarity=0.107  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|++|||||||++++++........  .+.+......... ..+  ..+.+||++|......           ..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~-----------~~   69 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVN-IDGKQIKLQIWDTAGQESFRS-----------IT   69 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEE-ETTEEEEEEEECCTTGGGTSC-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcc--cceeeccceeeee-eeeeEEEEEeecccCccchhh-----------HH
Confidence            689999999999999999998766433322  1222222222222 233  4588999999654321           11


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|+.++-+... ..++..+....+.+.  |++||.||+|.........+ .        ...+....
T Consensus        70 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~~~~~~~-~--------~~~~a~~~  138 (173)
T d2a5ja1          70 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRDVKRE-E--------GEAFAREH  138 (173)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHH
T ss_pred             HHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhhhhhHHH-H--------HHHHHHHc
Confidence            223457799999999984333222 344455555544444  99999999996543101111 1        33344444


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +.+++      ++||+.+.|+.+++..|.+.+
T Consensus       139 ~~~~~------e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         139 GLIFM------ETSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             TCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEE------EecCCCCCCHHHHHHHHHHHH
Confidence            55544      568888999999988877654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=121.38  Aligned_cols=161  Identities=21%  Similarity=0.162  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|.+|||||||++++++..+....    .+|...........++.  .+.+|||+|.....           ..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~   69 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG-----------AM   69 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSC----CTTCCEEEEEEEEETTEEEEEEEEECC----CC-----------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc----Ccccccceeeeeeeccccccccccccccccccc-----------cc
Confidence            378999999999999999999876542221    11221112222223443  58899999976531           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ....+..+|++++|+|.+.+-+... ..++..+...... ...|++||+||+|.........++         ...+...
T Consensus        70 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~~~---------~~~~~~~  139 (171)
T d2erya1          70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQRQVTQEE---------GQQLARQ  139 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTSCSSCHHH---------HHHHHHH
T ss_pred             ccccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhhccchHHH---------HHHHHHH
Confidence            1122345699999999983322222 2333333333322 224899999999975431011111         3445556


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+..|+      .+|++.+.|+++++..|.+.+..
T Consensus       140 ~~~~~~------e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         140 LKVTYM------EASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             TTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEcCCCCcCHHHHHHHHHHHHHH
Confidence            566554      47888999999999999887654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-17  Score=125.58  Aligned_cols=167  Identities=17%  Similarity=0.085  Sum_probs=99.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~   94 (277)
                      ++.++|+|+|.+|||||||++.+++..+.....    +|...........++  ..+.+||++|...           +.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~----~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~   67 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YD   67 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGG-----------GT
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccc----cceeeceeeeeeccCcceEEEeeccccccc-----------ch
Confidence            345899999999999999999999766433222    122111111112333  3477999999442           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhccc-CC---c
Q 023779           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHE-CP---K  167 (277)
Q Consensus        95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~-~~---~  167 (277)
                      .....++.++|++++|+|++.+-+...  ..+...+... ..+  .|++||.||+|....  ... +...... ..   .
T Consensus        68 ~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~--~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~  142 (183)
T d1mh1a_          68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPN--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  142 (183)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred             hhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCC--CcEEEEeecccchhh--hhhhhhhhhccccchhhH
Confidence            333446788999999999984333222  2344444443 333  399999999996544  222 1111110 00   1


Q ss_pred             hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ....+....+.-.++     ++||+.+.+++++++.+.+.+
T Consensus       143 ~~~~~a~~~~~~~~~-----E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         143 QGLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCceEE-----EcCCCCCcCHHHHHHHHHHHH
Confidence            122333444432222     578889999999999887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.2e-17  Score=124.61  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+++|.+|||||||++++++..+......  +.+.......+. ..+.  .+.+|||||.....           ...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~--t~~~~~~~~~i~-~~~~~~~~~i~Dt~G~~~~~-----------~~~   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVD-INGKKVKLQIWDTAGQERFR-----------TIT   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTS-----------CCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCC--ccceeEEEEEEE-ECCEEEEEEEEECCCchhhH-----------HHH
Confidence            6899999999999999999997664332221  122222222222 3443  47789999954321           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ..++..+|++++|+|.+.+-+.... .+...+......  ..|++++.+|.|....  ....+.        .+++....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~--~~~~~~--------~~~~~~~~  136 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTADQ--------GEALAKEL  136 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHHH--------HHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh--hhhHHH--------HHHHHHhc
Confidence            2235678999999999843222222 222333333332  2488899999997654  222222        33344454


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +..++      ++|++.+.++.++++.|.+.+.+
T Consensus       137 ~~~~~------~~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         137 GIPFI------ESSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             TCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEE------EECCCCCCCHHHHHHHHHHHHHh
Confidence            55555      46888899999999999887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-17  Score=124.30  Aligned_cols=160  Identities=17%  Similarity=0.100  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .++|+++|.+|||||||+++|++..+.....  ...+......... .++  ..+.+|||||......           .
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------~   72 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRT-----------L   72 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCC-----------S
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeecceeEEEE-EeccccEEEEEECCCchhhHH-----------H
Confidence            3899999999999999999999766432222  2222222222222 333  3589999999654211           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh--CcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF--GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++.++|++++|+|++.+-+.  .....++.+..  ......|++++.||.|....  ......        ...+..
T Consensus        73 ~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~--~v~~~~--------~~~~~~  140 (177)
T d1x3sa1          73 TPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENR--EVDRNE--------GLKFAR  140 (177)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCCcccc--ccchhhhhhhcccccccceeeEEEeeccccccc--cccHHH--------HHHHHH
Confidence            11234677999999998832221  22223333332  22334588899999996654  111111        334445


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      .+||+.+.|++++++.+.+.+-+
T Consensus       141 ~~~~~~~------e~Sa~tg~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         141 KHSMLFI------EASAKTCDGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             HTTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HCCCEEE------EEeCCCCCCHHHHHHHHHHHHcc
Confidence            5555444      46888899999999988776654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=119.45  Aligned_cols=158  Identities=18%  Similarity=0.131  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      ++|+|+|++|||||||++++++..+...    ..+|....+......++.  .+.+|||+|....    .    ...   
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~----~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~----~~~---   67 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWE----YDPTLESTYRHQATIDDEVVSMEILDTAGQEDT----I----QRE---   67 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSC----CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC----H----HHH---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeccccccccccccceEEEEeeccccccc----c----cch---
Confidence            7999999999999999999997654222    122333333322334553  4789999996542    0    111   


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                       .++..+|++++|+|++.+-+.... .+..++..... ....|+++|.||+|.........++         .+.+....
T Consensus        68 -~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e---------~~~~a~~~  136 (168)
T d2atva1          68 -GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLATEL  136 (168)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHHH
T ss_pred             -hhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHH---------HHHHHHHh
Confidence             123456999999999844333332 22233333222 2234999999999965330011111         33444555


Q ss_pred             CCeEEEEeCCCcccccChh-HHHHHHHHHHHHHh
Q 023779          177 DNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV  209 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~  209 (277)
                      +..|+      ++||+.+. ++++++..|.+.+.
T Consensus       137 ~~~~~------e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         137 ACAFY------ECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             TSEEE------ECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             CCeEE------EEccccCCcCHHHHHHHHHHHHH
Confidence            55554      46777776 59999887766543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=122.60  Aligned_cols=161  Identities=14%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-----------CCceEEEEeCCCCCCCCCCch
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------DGQVVNVIDTPGLFDLSAGSE   87 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtpG~~~~~~~~~   87 (277)
                      ..+|+|+|++|||||||+++|++........  ...+...........           ....+.+|||||         
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G---------   73 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG---------   73 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES---------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccC--CcccceeeEEEEEEecccccccccccceEEeccccCCc---------
Confidence            3789999999999999999999766422211  111111111111100           113588999999         


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779           88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (277)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~  165 (277)
                        .+++......++.++|++++|+|++.+.+.  .....++......  ....|++||.||+|....  ..+..      
T Consensus        74 --~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~------  141 (186)
T d2f7sa1          74 --QERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE------  141 (186)
T ss_dssp             --HHHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH------
T ss_pred             --chhhHHHHHHHHhcCCEEEEEEeccccccc--eeeeeccchhhhhccCCCceEEEEeeeccchhh--hcchH------
Confidence              233444444456788999999999832211  2233344433221  122478999999997543  11111      


Q ss_pred             CchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                       ...+++....+..++      ++||+.+.++.++++.+.+.+.
T Consensus       142 -~e~~~~~~~~~~~~~------e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         142 -RQARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             -HHHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence             013445566665554      5688888999999998887653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.69  E-value=2.4e-16  Score=119.02  Aligned_cols=158  Identities=20%  Similarity=0.199  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||+|++++..+....    .+|....+......++.  .+.+|||||....           ....
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~----~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~-----------~~~~   69 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----------AAIR   69 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---C-----------HHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCccc----CCccccccccccccccccccccccccccccch-----------hhhh
Confidence            68999999999999999999865542221    12222222222224444  5779999996542           1111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      ...+..+|++++|+|+..+.+... ..++..+..... ....|+++|+||+|.........++         .+.+....
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~~~v~~~~---------~~~~~~~~  139 (168)
T d1u8za_          70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRADQW  139 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHH---------HHHHHHHH
T ss_pred             hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccccccccHHH---------HHHHHHHc
Confidence            222345699999999984333222 234444444332 2224899999999964331011111         33444555


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      +..++      ++|++.+.|++++++.|.+.+
T Consensus       140 ~~~~~------e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         140 NVNYV------ETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence            55554      468889999999998876554

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=123.62  Aligned_cols=165  Identities=18%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .++|+|+|++|||||||++.+++..+....    .+|............+.  .+.+|||||...           +...
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~   67 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY----VPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRL   67 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCc----CCceeeecceeEeeCCceeeeeccccccchh-----------hhhh
Confidence            489999999999999999999876642221    12222222222223433  588999999543           2333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC-----chH
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPL  169 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~-----~~~  169 (277)
                      ...++.++|++++|+|++++-+....  .++..+.. ...+  .|+++|.||+|....  ....+.+.....     ...
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~i~lvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~~~  142 (191)
T d2ngra_          68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPK--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETA  142 (191)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CCEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHHH
T ss_pred             hhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCC--CceEEEecccccccc--chhhhhhhhcccccccHHHH
Confidence            44567899999999999844332222  23333333 3333  399999999997654  222111111000     112


Q ss_pred             HHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (277)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~  209 (277)
                      +.+....+. .|+      ++||+.+.+++++++.+...+-
T Consensus       143 ~~~~~~~~~~~~~------e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         143 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             HHHHHHTTCSCEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCeEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence            334444333 333      4688889999999988776553

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.1e-17  Score=125.13  Aligned_cols=161  Identities=18%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .++|+++|.+|||||||++.+++..+.....  ............. ..+  ..+.+|||+|....           ...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~--~t~~~~~~~~~i~-~~~~~~~l~i~d~~g~~~~-----------~~~   68 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVT-INEHTVKFEIWDTAGQERF-----------ASL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccc--ccccceeeccccc-cccccccccccccCCchhH-----------HHH
Confidence            4899999999999999999998776533222  1122222222222 343  35889999995431           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc-ccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~-~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ...++..+|++++|+|.+.+.+... ..++..+.......  .|++++.||+|...... ..+..       ...+++..
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~~~~~~~v~~-------~~~~~~~~  139 (170)
T d1ek0a_          69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQEGGERKVAR-------EEGEKLAE  139 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCH-------HHHHHHHH
T ss_pred             HHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeecccccccccchhhhhH-------HHHHHHHH
Confidence            1224567899999999984433333 22333333333333  48999999999654310 01100       11334555


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+..|+      ++||+.+.++++++..|.+.+
T Consensus       140 ~~~~~~~------e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         140 EKGLLFF------ETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred             HcCCEEE------EecCCCCcCHHHHHHHHHHHh
Confidence            5565554      568888999999998876543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-15  Score=115.74  Aligned_cols=163  Identities=20%  Similarity=0.189  Sum_probs=94.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~   95 (277)
                      -.+|+++|.+|||||||++.+++.... .....+.+.....  . ....++.  .+.+||+|+...        ..++  
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~~~~~~~~~~d~~~~~g--------~e~~--   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--R-TLMVDGESATIILLDMWENKG--------ENEW--   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--E-EEEETTEEEEEEEECCTTTTH--------HHHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecce--e-eeccCCceeeeeeeccccccc--------cccc--
Confidence            378999999999999999999876532 1111111111111  1 1123443  467899887431        1122  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ....++.++|++++|+|++.+-+... ..++..+....+ ....|++||+||+|.........++         .+.+..
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~  139 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAV  139 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHH---------HHHHHH
Confidence            23346789999999999983322222 222222332211 1234999999999965431112221         233434


Q ss_pred             hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      ..+..++      ++|++.+.|+++++..|.+.+..
T Consensus       140 ~~~~~~~------e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         140 VFDCKFI------ETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             HHTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence            4454544      46888999999999988876643

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=117.21  Aligned_cols=157  Identities=13%  Similarity=0.029  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|++|||||||+|+|++..+.....     +...... ........+.++|+||...           .......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~d~~g~~~-----------~~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVE-TVEYKNISFTVWDVGGQDK-----------IRPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-----CSSCCEE-EEECSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ceeeEEE-EEeeeeEEEEEecCCCccc-----------chhhhhh
Confidence            489999999999999999999766532221     1111111 1224667899999999653           1222333


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      .+..++++++++|...+.+...  ..+.+.+.....  ...|++++.||.|....  ....+.... .   ........+
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~k~d~~~~--~~~~~i~~~-~---~~~~~~~~~  135 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEITDK-L---GLHSLRHRN  135 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHHHH-T---TGGGCSSCC
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcc--cCceEEEEeeccccccc--ccHHHHHHH-H---HHHHHhhCC
Confidence            4677899999999984333222  122222222212  22489999999997654  222222211 0   000111112


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      ..+      .++||+++.|+++++++|.+.
T Consensus       136 ~~~------~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         136 WYI------QATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EEE------EECBTTTTBTHHHHHHHHHHH
T ss_pred             CEE------EEeECCCCCCHHHHHHHHHhc
Confidence            112      267999999999999998753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-16  Score=120.85  Aligned_cols=160  Identities=22%  Similarity=0.179  Sum_probs=96.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|.+|||||||++.+++.......    .+|....+......++  ..+.+|||+|......           .
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~   68 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-----------M   68 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-----------S
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCccc----Ccceeecccccccccccccccccccccccccccc-----------c
Confidence            489999999999999999999876542221    1122111222222344  3478999999654321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                      ...+++++|++++|+|++.+-+... ..++..+.+.... ...|+++|+||+|.........++         ..++...
T Consensus        69 ~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e~---------~~~~~~~  138 (169)
T d1x1ra1          69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEMATK  138 (169)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHHHHH
T ss_pred             hhhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehhh---------HHHHHHH
Confidence            1112345699999999984333222 2344444444332 224899999999976541111121         3344455


Q ss_pred             cCCeEEEEeCCCcccccChh-HHHHHHHHHHHHHh
Q 023779          176 CDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV  209 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~  209 (277)
                      .+..|+      ++|++.+. |+++++..+.+.+.
T Consensus       139 ~~~~~~------e~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         139 YNIPYI------ETSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             HTCCEE------EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEcCCCCCcCHHHHHHHHHHHHH
Confidence            565555      35776654 89999998877654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=119.28  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=94.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+|+|.+|||||||++.++...+....    .+|...........++  ..+.+||++|......        +.  
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~--   68 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MR--   68 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HH--
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCccccccceeEEeeeeEEEeccccccCcccccc--------cc--
Confidence            478999999999999999999876642221    1222222221112233  3588999999775321        11  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~  175 (277)
                       ..++.++|++++|+|++.+-+... ..++..+.+..+. ...|++||.||+|.........++         ...+...
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T d1c1ya_          69 -DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  137 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             -cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchhH---------HHHHHHH
Confidence             112345699999999984333332 2344444443321 223899999999976441111111         2233333


Q ss_pred             cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .. ..++      ++||+.+.|+.+++..|.+.+
T Consensus       138 ~~~~~~~------e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCEEE------EEcCCCCcCHHHHHHHHHHHh
Confidence            33 3333      568899999999999887655

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2e-16  Score=121.24  Aligned_cols=161  Identities=15%  Similarity=0.057  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|.+|||||||++.+++..+........+.+....... .......+.+|||||......           ....
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~-----------~~~~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQS-----------LGVA   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGSC-----------SCCG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeee-eCCceEEEEeeecCCcccccc-----------cccc
Confidence            6899999999999999999997664322221112222111111 112234578999999654221           1123


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh-
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-  175 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~-  175 (277)
                      .+..+|++++|+|.....+... ..++..+.......  ...|+++|+||+|....  ....+.        ...+... 
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~~  140 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWCYSK  140 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHHHHT
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHH--------HHHHHHHh
Confidence            4567899999999973222221 23444444433221  12389999999996544  211111        1222222 


Q ss_pred             cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .+..++      ++|++.+.|+.++++.+.+.+
T Consensus       141 ~~~~~~------e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         141 NNIPYF------ETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             TSCCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence            233443      468888999999998875543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-15  Score=115.63  Aligned_cols=159  Identities=18%  Similarity=0.066  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+|+|.+|||||||+|.+++........  .+.......... ...+  ..+.+|||+|...           .....
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~-----------~~~~~   72 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDL-EVDGHFVTMQIWDTAGQER-----------FRSLR   72 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEE-EETTEEEEEEEEECCCCGG-----------GHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeeeeeeeee-eecCceeeEeeecccCcce-----------ehhhh
Confidence            589999999999999999998655422211  111112212222 2343  3468999999543           22334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                      ......++++++++|.+.+.+... ..+++.+.......  ...|+++|.||+|..+.. ...+         ..+++..
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-v~~~---------~~~~~~~  142 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTE---------EAQAWCR  142 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHH---------HHHHHHH
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-CcHH---------HHHHHHH
Confidence            445678899999999983322222 23444444433221  124899999999975431 1111         1344554


Q ss_pred             hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ..+ ..++      ++|++.+.|++++++.+.+.+
T Consensus       143 ~~~~~~~~------e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         143 DNGDYPYF------ETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             HTTCCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence            444 3343      468889999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.6e-16  Score=117.01  Aligned_cols=158  Identities=13%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      .+|+|+|.+|||||||++.+++..+........+........ ........+.+||++|...          ........
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~   71 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV-DIDGERIKIQLWDTAGQER----------FRKSMVQH   71 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEE-EETTEEEEEEEEECCCSHH----------HHTTTHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeee-eeeccceEEEEEeccCchh----------hcccccee
Confidence            689999999999999999998666433332222222222211 1112334588999999432          11111223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  178 (277)
                      ++.++|++++|+|++++-+... ..++..+.+.... ...|++||+||.|.........++         .+.+....+.
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~---------~~~~~~~~~~  141 (165)
T d1z06a1          72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDL---------AQKFADTHSM  141 (165)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHTTC
T ss_pred             eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHH---------HHHHHHHCCC
Confidence            4578899999999984333332 2344444443221 123999999999975441111111         3345555565


Q ss_pred             eEEEEeCCCcccccC---hhHHHHHHHHH
Q 023779          179 RCVLFDNKTKDEAKG---TEQVRQLLSLV  204 (277)
Q Consensus       179 ~~~~~~~~~~~s~~~---~~~~~~L~~~i  204 (277)
                      .++      ++||+.   +.++.+++..|
T Consensus       142 ~~~------e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         142 PLF------ETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CEE------ECCSSSGGGGSCHHHHHHHH
T ss_pred             EEE------EEecccCCcCcCHHHHHHHh
Confidence            554      356654   45788887765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.64  E-value=2.1e-15  Score=114.48  Aligned_cols=163  Identities=14%  Similarity=0.064  Sum_probs=93.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ++..+|+|+|.+|||||||+|+|.+..+.....  ...+.   ... ....+..+.++|++|.....           ..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~--~~~~~---~~~-~~~~~~~~~~~d~~~~~~~~-----------~~   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP--TIGSN---VEE-IVINNTRFLMWDIGGQESLR-----------SS   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC--CSCSS---CEE-EEETTEEEEEEECCC----C-----------GG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc--cccee---EEE-EeecceEEEEeccccccccc-----------cc
Confidence            345899999999999999999999877532221  11111   111 22466789999999855321           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~  176 (277)
                      .......++++++++|.+...+....................|+++|+||+|....  ....+....     + .+....
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~-----~-~~~~~~  147 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQF-----L-KLTSIK  147 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----H-TGGGCC
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHH-----H-HHHhhH
Confidence            11223567999999999844333332211111111111223499999999997654  333222211     1 000111


Q ss_pred             CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      ......    .++||+++.|+++++++|.+.+
T Consensus       148 ~~~~~~----~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         148 DHQWHI----QACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             SSCEEE----EECBTTTTBTHHHHHHHHHHHH
T ss_pred             hcCCEE----EEEeCCCCCCHHHHHHHHHHHh
Confidence            111111    2568899999999999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.6e-15  Score=115.62  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+|+++|.+|||||||++.++...+....    .+|...........++  ..+.+|||+|....           ....
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DNVR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TTTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcc----CCceeecccccccccceEEeeccccccccccc-----------cccc
Confidence            68999999999999999999876543221    1222222222222333  34779999995431           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC----CchHHH
Q 023779           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLKE  171 (277)
Q Consensus        98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~----~~~~~~  171 (277)
                      ...+.++|++++|+|++.+-+...  ..+...+.. ...+.  |+++|+||.|..... ....+....+.    ......
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~~  143 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNT--KMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN  143 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTC--EEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCcc--eEEEEEecccccccc-hhhHHHhhhhcCcchHHHHHH
Confidence            345788999999999984332222  222333333 33343  999999999975431 11111111100    011333


Q ss_pred             HHhhcCCeEEEEeCCCcccccChh-HHHHHHHHHHHHH
Q 023779          172 ILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI  208 (277)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~  208 (277)
                      +....+...+.     ++||+.+. +++++++.+...+
T Consensus       144 ~a~~~~~~~y~-----E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         144 MAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             HHHHHTCSEEE-----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEE-----EEeCCCCCcCHHHHHHHHHHHH
Confidence            44444442222     56888876 5999999887654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.62  E-value=5.1e-15  Score=116.12  Aligned_cols=156  Identities=13%  Similarity=0.127  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCC--cc------------ccC-----------------CCCCcceeeEEEEEeee
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKA--FK------------ASA-----------------GSSGVTKTCEMKTTVLK   66 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~~------------~~~-----------------~~~~~t~~~~~~~~~~~   66 (277)
                      ..++|+++|+.++|||||+++|+....  ..            .|.                 ...+.|......... +
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~   86 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-T   86 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-C
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe-c
Confidence            447899999999999999999962110  00            000                 001233333333333 5


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk  146 (277)
                      .++.+.++||||..++       ...+...    ...+|++++|+|+..++...+...+..+... |-+   ++++++||
T Consensus        87 ~~~~~~iiD~PGH~df-------v~~~~~g----~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~vNK  151 (222)
T d1zunb3          87 AKRKFIIADTPGHEQY-------TRNMATG----ASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINK  151 (222)
T ss_dssp             SSEEEEEEECCCSGGG-------HHHHHHH----HTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEEC
T ss_pred             cceEEEEEeccchhhh-------hhhhccc----cccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEEEc
Confidence            6788999999997752       2333333    3456999999999988888888877766664 532   69999999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCC--eEEEEeCCCcccccChhHH
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDN--RCVLFDNKTKDEAKGTEQV  197 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~  197 (277)
                      +|........+......     +..++...+.  .-..|   .+.||..+.|+
T Consensus       152 ~D~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~i~~---IPiSA~~G~ni  196 (222)
T d1zunb3         152 MDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNV  196 (222)
T ss_dssp             TTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTT
T ss_pred             cccccccceehhhhHHH-----HhhhhHhhccCCCceEE---EEEEcccCccC
Confidence            99876533444544444     6667666542  11111   13466666655

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.1e-15  Score=113.47  Aligned_cols=156  Identities=19%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      ..+|+++|++|||||||++++++..+ ....    .|....+......++.  .+.+|||+|...         ..   +
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~----~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~---------~~---~   67 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLE----KTESEQYKKEMLVDGQTHLVLIREEAGAPD---------AK---F   67 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC-CCCC----CSSCEEEEEEEEETTEEEEEEEEECSSCCC---------HH---H
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCcC----CccceeEEEEeecCceEEEEEEeecccccc---------cc---c
Confidence            49999999999999999999987764 2221    1111112222224554  478999999553         11   1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~  174 (277)
                          ++.+|++++|+|++++-+... ..+..++....... ...|+++|+||.|........+..       ...+.+..
T Consensus        68 ----~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~~~  136 (175)
T d2bmja1          68 ----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALCA  136 (175)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHHHH
T ss_pred             ----ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHHHH
Confidence                234699999999984433333 23444554432221 223899999998864331011100       01233333


Q ss_pred             hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (277)
Q Consensus       175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~  208 (277)
                      .... .|+      ++||+.+.++++++..+.+.+
T Consensus       137 ~~~~~~~~------e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         137 DMKRCSYY------ETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             TSTTEEEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred             HhCCCeEE------EeCCCCCcCHHHHHHHHHHHH
Confidence            3332 333      568888899999888766544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.60  E-value=1.8e-14  Score=108.09  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      .++|+++|.+|||||||+|++++..+...     ..|....... ....+..+.++|+||....           .....
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~   67 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVET-VTYKNLKFQVWDLGGLTSI-----------RPYWR   67 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEE-EEETTEEEEEEEECCCGGG-----------GGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeee-eccCceEEEEeeccccccc-----------cccch
Confidence            48999999999999999999998765321     1222222222 2357788999999996531           12222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ......+++++++++......... ..+...... ......|++++.||.|....  ....+....     +.  ...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-----~~--~~~~~  137 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPALK  137 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGCT
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc--ccHHHHHHH-----HH--HHHHh
Confidence            345677999999998733333322 211221111 11223489999999998755  332222221     10  01111


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .+...+   .++||+.+.|++++++.|.+.+..
T Consensus       138 ~~~~~~---~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         138 DRKWQI---FKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TSCEEE---EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCEE---EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            111111   256888999999999999887754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1e-14  Score=115.70  Aligned_cols=138  Identities=17%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh---CCCCcc------------cc--------------CCCCCcceeeEEEEEeeeCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK------------AS--------------AGSSGVTKTCEMKTTVLKDGQ   69 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~---~~~~~~------------~~--------------~~~~~~t~~~~~~~~~~~~~~   69 (277)
                      .++|+++|+.++|||||+.+|+   |.-...            .+              .-..+.|.......+. +.++
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEec-cCCE
Confidence            3799999999999999999985   211000            00              0012556665555554 7889


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEEE
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV  142 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (277)
                      .++|+||||..+           +..-+......+|+.|+|+|+..+       .....+..+..+.. +|-   +++||
T Consensus        85 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv---~~iiv  149 (239)
T d1f60a3          85 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLIV  149 (239)
T ss_dssp             EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEEE
T ss_pred             EEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCC---CeEEE
Confidence            999999999886           333334456778999999999722       22334454444444 444   26899


Q ss_pred             EEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779          143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (277)
Q Consensus       143 v~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  177 (277)
                      ++||+|........+......     +..++...+
T Consensus       150 ~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~  179 (239)
T d1f60a3         150 AVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG  179 (239)
T ss_dssp             EEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred             EEECCCCCCCCHHHHHHHHHH-----HHHHHHhcC
Confidence            999999876532445555555     666666555

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=9.7e-15  Score=113.77  Aligned_cols=117  Identities=11%  Similarity=0.121  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|++|||||||+|+|++....+      +.|... ........+..+.++||||....       ...+...+..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~-~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   69 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQE-PLSAADYDGSGVTLVDFPGHVKL-------RYKLSDYLKT   69 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSS-CEEETTGGGSSCEEEECCCCGGG-------THHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecc-eEEEEEeCCeEEEEEecccccch-------hhHHHHHHHH
Confidence            589999999999999999999876421      122222 22233466778999999996642       1223333333


Q ss_pred             cCCCccEEEEEEeCCC-CCC-HHHHHH----HHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          100 AKDGIHAFLVVFSVTN-RFS-QEEETA----VHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~-~~~-~~~~~~----~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      .....+.+++++++.. ... ......    +..+......+  .|+++|+||+|....
T Consensus        70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA  126 (209)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred             HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence            3445588888998772 211 111222    22333333333  499999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=9.7e-15  Score=113.78  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      ++|+|+|++|||||||+|+|++..+....   .+.+............+..+.+||+||...       ..   ...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~---~~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LR---FQLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBC---CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HH---HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc---CCeeEEEEEEEEeeeeeeeeeeeecccccc-------cc---chhhhh
Confidence            47999999999999999999986653221   222223333333233466799999999431       11   122333


Q ss_pred             cCCCccEEEEEEeCCCCCCH--H-HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          100 AKDGIHAFLVVFSVTNRFSQ--E-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       100 ~~~~~~~~l~v~d~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ++..++++++|+|++.....  . ...+..++..........|++||.||+|....
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            45677999999999822111  1 11222333322222222389999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=3.3e-14  Score=106.04  Aligned_cols=161  Identities=8%  Similarity=-0.007  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (277)
                      ||+++|++|||||||+|+|++..+...     .+|........ ...+....++|++|...           ........
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEEL-AIGNIKFTTFDLGGHIQ-----------ARRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEE-CCTTCCEEEEECCCSGG-----------GGGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEe-ccCCeeEEEEeeccchh-----------hhhhHhhh
Confidence            799999999999999999998765222     22333333322 25667789999998543           22233445


Q ss_pred             CCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc--CCchHHHHHhhcC
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CPKPLKEILQLCD  177 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~  177 (277)
                      ....+++++++|.......... ..+..... .......|++++.||.|....  ....+..+..  ..........  .
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~--~  139 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFN-IAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIE--G  139 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CC--S
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhh-hhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhc--c
Confidence            6778999999999843333332 12122221 122334589999999997654  2332222110  0000010100  1


Q ss_pred             CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (277)
Q Consensus       178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~  206 (277)
                      .+..   ...++||+.+.|+++++++|.+
T Consensus       140 ~~~~---~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         140 QRPV---EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             SCCE---EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             cCCC---EEEEeeCCCCCCHHHHHHHHhC
Confidence            1111   1136799999999999998854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=7.3e-13  Score=108.83  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEEEE------------------------------------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKT------------------------------------   62 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~------------------------------------   62 (277)
                      ++|+|+|..++|||||+|+|+|..+.+++..+.+ ..+...+..                                    
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            5799999999999999999999997777653322 111111110                                    


Q ss_pred             ------------EeeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHHhhcCCCc-cEEEEEEeCCCCCCHHHHHHHHH
Q 023779           63 ------------TVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCLGMAKDGI-HAFLVVFSVTNRFSQEEETAVHR  127 (277)
Q Consensus        63 ------------~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~~~~~~~  127 (277)
                                  .....-..+.++||||+......+.  .....+......+.... +++++|.++...++..+  ...+
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~~  184 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALKI  184 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHHH
Confidence                        0001123488999999986543321  12222333333333333 56677777765555554  3344


Q ss_pred             HHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          128 LPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       128 l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ++...+..  .++++|+||+|....
T Consensus       185 ~~~~~~~~--~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVDPQG--QRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHCTTC--SSEEEEEECGGGSCT
T ss_pred             HHHhCcCC--CceeeEEeccccccc
Confidence            44442222  389999999998865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.47  E-value=5.9e-13  Score=109.77  Aligned_cols=129  Identities=16%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc-ceeeEEE-------------------------------------
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMK-------------------------------------   61 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~-------------------------------------   61 (277)
                      ++|+|+|..++|||||+|+|+|..+.+++..+.+. .+...+.                                     
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            47999999999999999999999976665432211 1111110                                     


Q ss_pred             -------------------EEeeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHHhhcCCCccEE-EEEEeCCCCCCH
Q 023779           62 -------------------TTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQ  119 (277)
Q Consensus        62 -------------------~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-l~v~d~~~~~~~  119 (277)
                                         ......-..+.+|||||+......+.  .....+...+..+...++.+ +++++....+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~  184 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN  184 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred             HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence                               00101123588999999986543221  12223333333344455664 455565544443


Q ss_pred             HHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          120 EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ..  .+.+++..-+..  .++++|+||+|....
T Consensus       185 ~~--~~~~~~~~~~~~--~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         185 SD--ALQLAKEVDPEG--KRTIGVITKLDLMDK  213 (306)
T ss_dssp             CS--HHHHHHHHCSSC--SSEEEEEECTTSSCS
T ss_pred             cH--HHHHHHHhCcCC--CeEEEEEeccccccc
Confidence            33  334455542222  389999999998765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.47  E-value=4.2e-14  Score=107.70  Aligned_cols=168  Identities=10%  Similarity=-0.013  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   96 (277)
                      .+..+|+|+|++|||||||+|+|++..+....+     +........ .+.+..+.++|++|.....           ..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~   73 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEEL-TIAGMTFTTFDLGGHIQAR-----------RV   73 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEE-EETTEEEEEEEECC----C-----------CG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-----ccccceeEE-Eecccccccccccchhhhh-----------hH
Confidence            456899999999999999999999877532211     111111222 2567778899999865422           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH---hcccCCchHH---
Q 023779           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF---LGHECPKPLK---  170 (277)
Q Consensus        97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~---l~~~~~~~~~---  170 (277)
                      ........+++++++|..........................|++++.||.|....  ......   +.........   
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhh
Confidence            23345677999999998833333222111111111111123599999999997654  233222   2110000000   


Q ss_pred             HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~  207 (277)
                      .........+.    ..++||+++.|+.+++++|.+.
T Consensus       152 ~~~~~~~~~~~----~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         152 SLKELNARPLE----VFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CTTTCCSCCEE----EEECBTTTTBSHHHHHHHHHTT
T ss_pred             hHHHhhcCCCE----EEEEeCCCCCCHHHHHHHHHHh
Confidence            00000001111    2267999999999999988654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.6e-13  Score=111.51  Aligned_cols=116  Identities=23%  Similarity=0.317  Sum_probs=79.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh---CCCCc-cc----------cCCCCCcceeeEEEEEee---------------eCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL---GRKAF-KA----------SAGSSGVTKTCEMKTTVL---------------KDGQ   69 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~---~~~~~-~~----------~~~~~~~t~~~~~~~~~~---------------~~~~   69 (277)
                      -++|+|+|+.++|||||+.+|+   |.... ..          .....+.|..........               ++..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3569999999999999999996   21100 00          011123343333332211               1334


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~  149 (277)
                      .++|+||||+.++.       .+...++..+    |++++|+|+..++...+...++.+... +-    |+++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al~~~----D~allVVda~eGv~~qT~~~~~~a~~~-~~----p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAALRVT----DGALVVVDTIEGVCVQTETVLRQALGE-RI----KPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHHHTC----SEEEEEEETTTBSCHHHHHHHHHHHHT-TC----EEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHHhhc----CceEEEEecccCcchhHHHHHHHHHHc-CC----CeEEEEECccc
Confidence            58999999998864       3666666554    999999999989999998888877653 32    89999999996


Q ss_pred             C
Q 023779          150 L  150 (277)
Q Consensus       150 ~  150 (277)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.43  E-value=6.8e-13  Score=104.33  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCc-----------------------------cccCCCCCcceeeEEEEEeeeCCc
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAF-----------------------------KASAGSSGVTKTCEMKTTVLKDGQ   69 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~   69 (277)
                      ..+|+++|+.++|||||+.+|+.....                             .......+.|......... ++++
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~-~~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe-cCCc
Confidence            489999999999999999988521000                             0001122334444334333 6788


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcEEE
Q 023779           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMIV  142 (277)
Q Consensus        70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~iv  142 (277)
                      .+.++||||..+           +...+.....-+|+.++|+|+..+.       .....+.+..+.. ++..   ++|+
T Consensus        82 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~---~iIv  146 (224)
T d1jnya3          82 FFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLIV  146 (224)
T ss_dssp             EEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCEE
T ss_pred             eeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCC---ceEE
Confidence            999999999876           3333444456779999999998542       2223333333333 3432   7899


Q ss_pred             EEeCCCCCC
Q 023779          143 VFTGGDDLE  151 (277)
Q Consensus       143 v~nk~D~~~  151 (277)
                      ++||+|...
T Consensus       147 ~iNK~D~~~  155 (224)
T d1jnya3         147 AVNKMDLTE  155 (224)
T ss_dssp             EEECGGGSS
T ss_pred             EEEcccCCC
Confidence            999999774

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.6e-13  Score=107.92  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=85.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh---CCCCcc--------------------------ccCCCCCcceeeEEEEEeeeCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTKTCEMKTTVLKDG   68 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~---~~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (277)
                      +.++|+++|+.++|||||+.+|+   |.-...                          ......+.+........ .+.+
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-~~~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-ETEH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE-ECSS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc-cccc
Confidence            34689999999999999999994   211000                          00001123333333333 3677


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcEE
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI  141 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~i  141 (277)
                      ..+.++||||..++           ...+......+|++++|+|+..+.       .......+..+.. .+.+   +++
T Consensus       102 ~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~---~ii  166 (245)
T d1r5ba3         102 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLV  166 (245)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEE
T ss_pred             ceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCC---eEE
Confidence            88999999997753           333333456779999999997432       2234455544444 3432   688


Q ss_pred             EEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcCC-e---EEEEeCCCcccccChhHHHHHHH
Q 023779          142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDN-R---CVLFDNKTKDEAKGTEQVRQLLS  202 (277)
Q Consensus       142 vv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~s~~~~~~~~~L~~  202 (277)
                      +++||+|....  ....+.+.+..     +...+...+. .   .+.   ..+.||..+.|+.++++
T Consensus       167 v~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~---~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         167 VVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVK---YMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             EEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEE---EEECBTTTTBTTSSCCC
T ss_pred             EEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCE---EEEeeccCCCCcccchh
Confidence            99999998643  11334555544     5444443321 0   111   12457777777766544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.2e-12  Score=98.87  Aligned_cols=165  Identities=15%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|..|||||||++.+....++..+         ..... .......+.+|||.|..           .+.....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~---------~~~~~-~~~~~~~~~i~D~~Gq~-----------~~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG---------IVETH-FTFKDLHFKMFDVGGQR-----------SERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS---------EEEEE-EEETTEEEEEEEECCSG-----------GGGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc---------EEEEE-EEeeeeeeeeecccccc-----------ccccchh
Confidence            478999999999999999998754432221         11122 23567789999999943           3344455


Q ss_pred             hcCCCccEEEEEEeCCC--CCCH------HHHHHHHH----HHHHhCcCccCcEEEEEeCCCCCCcc--cccHHHHhccc
Q 023779           99 MAKDGIHAFLVVFSVTN--RFSQ------EEETAVHR----LPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHE  164 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~--~~~~------~~~~~~~~----l~~~~~~~~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~  164 (277)
                      .++..++++++|+|.+.  ++..      ........    +.......  .|+++++||+|.....  ...+.......
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~  138 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDLFEEKIKKSPLTICYPEY  138 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchhhhhhccchHHHHHhhhh
Confidence            67899999999999872  1111      11112222    22222223  3999999999853210  00010000000


Q ss_pred             -CCch-------H-HHHHhh---cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          165 -CPKP-------L-KEILQL---CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       165 -~~~~-------~-~~~~~~---~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                       ....       + ..+.+.   .. ..++.+    .+||+.+.+++++++.+.+++-.
T Consensus       139 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         139 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             CSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHHHhcccCCCcceeE----EEEeECCHhHHHHHHHHHHHHHh
Confidence             0000       0 111111   11 223322    35888899999999998877643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.5e-12  Score=98.21  Aligned_cols=114  Identities=16%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      -++|+++|.+|||||||++.+.    +....   .+|.......+ ......+.+||++|..           .......
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~-~~~~~~~~~~D~~gq~-----------~~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDF-EIKNVPFKMVDVGGQR-----------SERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEE-EETTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEE-eeeeeeeeeeccccee-----------eeccccc
Confidence            3799999999999999999994    22221   22333333333 3678889999999943           2334445


Q ss_pred             hcCCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCC
Q 023779           99 MAKDGIHAFLVVFSVTNRFSQ--------EEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLE  151 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~~--------~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~  151 (277)
                      .++..+++++++++.+.....        .......++...+..  ....|++|++||+|..+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            567889999999999832211        112233333333221  11239999999999653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.2e-11  Score=95.07  Aligned_cols=168  Identities=15%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|..|||||||++.+....+ ..     .+|........ ......+.+||++|...           +.....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~-----~pTiG~~~~~~-~~~~~~~~~~d~~g~~~-----------~~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-SG-----VPTTGIIEYPF-DLQSVIFRMVDVGGQRS-----------ERRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-SC-----CCCCSCEEEEE-ECSSCEEEEEECCCSTT-----------GGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-CC-----CceeeEEEEEE-eccceeeeecccccccc-----------cccccc
Confidence            47999999999999999999975543 21     22333333322 25677899999999653           233344


Q ss_pred             hcCCCccEEEEEEeCCCCCC--------HHH----HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc--ccccHHHHhccc
Q 023779           99 MAKDGIHAFLVVFSVTNRFS--------QEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED--HEKTLEDFLGHE  164 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~~~--------~~~----~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~--~~~~l~~~l~~~  164 (277)
                      .++..+++++++++.+....        ...    ..+...+.......  .|+++++||.|....  ....+..+....
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~  141 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLLEEKIMYSHLVDYFPEY  141 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHHHHHTTTSCHHHHSTTC
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhhhhcccchHHHHhcccc
Confidence            56789999999999872110        011    12222232222223  399999999996532  012222222110


Q ss_pred             C--Cch-------HH-HHHhh---cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          165 C--PKP-------LK-EILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       165 ~--~~~-------~~-~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      .  ...       +. .++..   ....++.+    .+||+.+.++.++++.+.+.+.+
T Consensus       142 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         142 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             CSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHHH
Confidence            0  000       11 11111   11223332    34788899999999999877654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=4.9e-10  Score=92.16  Aligned_cols=111  Identities=9%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCcCccCcEEEEEeCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      ..+.++.|.|.+.         .+. ..    ...+|.+++|+....   +.+... ..-+.+.       +-++|+||+
T Consensus       147 ~d~iliEtvG~gq---------~e~-~i----~~~aD~~l~v~~P~~---Gd~iq~~k~gi~e~-------aDi~VvNKa  202 (327)
T d2p67a1         147 YDVVIVETVGVGQ---------SET-EV----ARMVDCFISLQIAGG---GDDLQGIKKGLMEV-------ADLIVINKD  202 (327)
T ss_dssp             CSEEEEEEECCTT---------HHH-HH----HTTCSEEEEEECC---------CCCCHHHHHH-------CSEEEECCC
T ss_pred             CCeEEEeeccccc---------cch-hh----hhccceEEEEecCCC---chhhhhhchhhhcc-------ccEEEEEee
Confidence            3466777777653         111 11    234589999887651   111111 1122222       457889999


Q ss_pred             CCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      |....  ......+..     +...+.......-.. .+...+|+.++.|+++|.+.|.++...
T Consensus       203 D~~~~--~~~~~~~~~-----~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         203 DGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             CTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             cccch--HHHHHHHHH-----HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            97654  333333332     333333222110000 011247888999999999999987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=2.7e-11  Score=94.86  Aligned_cols=114  Identities=15%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ..+|+++|..|||||||++.+.....        .+|.......+ ..++..+.+||+.|...           ......
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~--------~pTiG~~~~~~-~~~~~~~~~~D~~Gq~~-----------~r~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV--------VLTSGIFETKF-QVDKVNFHMFDVGGQRD-----------ERRKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC--------CCCCSCEEEEE-EETTEEEEEEECCCSTT-----------TTTGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc--------CCCCCeEEEEE-EECcEEEEEEecCccce-----------eccchh
Confidence            47899999999999999999863221        12222222222 35778899999999553           223334


Q ss_pred             hcCCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCc
Q 023779           99 MAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED  152 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~~--------~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~  152 (277)
                      .++.++++++++++.+..        ........+..+..++...  ...|++|++||+|..+.
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            567889999999998721        1111223334444444332  12499999999997643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=1.2e-10  Score=95.12  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~   81 (277)
                      ...+|+|||.|+||||||+|+|++...+..+. .+.+|...........+                ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~an-ypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCC-CCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            44899999999999999999999765432322 12233332221111111                23688999999987


Q ss_pred             CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ......-++.++...+.    .+|++++|+++.
T Consensus        88 gA~~g~GLGn~fL~~ir----~~d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVR----AVDAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred             ccccccccHHHHHHHhh----ccceeEEEEecc
Confidence            76655556677777765    449999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.06  E-value=5.2e-10  Score=88.36  Aligned_cols=78  Identities=14%  Similarity=0.033  Sum_probs=41.7

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (277)
Q Consensus        69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D  148 (277)
                      ..+.++||||..+..    .........+.  ....+++++++|+.........................|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~----~~~~~~~~~~~--~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETF----LFHEFGVRLME--NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHH----HHSHHHHHHHH--TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHH----HHHHHHHHHHh--hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            358899999965311    00111111211  234578899999874444443322222211111111238999999999


Q ss_pred             CCCc
Q 023779          149 DLED  152 (277)
Q Consensus       149 ~~~~  152 (277)
                      ....
T Consensus       169 ~~~~  172 (244)
T d1yrba1         169 LLSE  172 (244)
T ss_dssp             GCCH
T ss_pred             cccH
Confidence            8865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=9.4e-11  Score=96.85  Aligned_cols=89  Identities=13%  Similarity=0.020  Sum_probs=43.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EEEEE---------------------eeeCCceEEEEeC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTT---------------------VLKDGQVVNVIDT   76 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~---------------------~~~~~~~~~liDt   76 (277)
                      .+|+|+|.||||||||+|+|+|... ..+..+. +|...  ++...                     .......+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~-~v~nypf-tT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPF-TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC-chhcCCC-CcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            3699999999999999999998764 2222221 12111  11100                     0011245899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      ||+.......    ..+...+....+.+|++++|+|+.
T Consensus        79 pGli~ga~~g----~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETT
T ss_pred             CCcccchhcc----cchHHHHHHhhccceEEEEEeccc
Confidence            9997543221    223333334457889999999986

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=1.1e-10  Score=94.41  Aligned_cols=90  Identities=17%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDL   82 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~   82 (277)
                      ..+|+|||.|+||||||+|+|++..+. .+.. +.+|...........+                .-.+.++|.||+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~-~~~y-pf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIE-AANY-PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCc-cccC-CCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            378999999999999999999976642 2211 1122221111111011                124779999999864


Q ss_pred             CCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (277)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~  114 (277)
                      .....-++.++.+.+..+    |++++|+|+.
T Consensus        80 a~~g~Glg~~FL~~ir~~----d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEGLGNKFLANIRET----DAIGHVVRCF  107 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTC----SEEEEEEECS
T ss_pred             cccCCCccHHHHHHHHhc----cceEEEeecc
Confidence            332333455666666544    9999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=5.4e-10  Score=90.07  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~   89 (277)
                      ......+|+|+|.+|||||||+|+|.|.....++. ..+.|......    ..+..+.++||||+..+...+.+.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i----~~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWV----KVGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEE----ECCCCeEEecCCCccccCCccHHH
Confidence            34466899999999999999999999988644442 22334332221    345679999999998766555443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=3.6e-10  Score=87.32  Aligned_cols=63  Identities=27%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcceee-EEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~~-~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      .+++.+++|++|||||||+|+|.+.....++..     ....|++. ..+.   .. ....++||||+-+...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~---l~-~gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK---FD-FGGYVVDTPGFANLEI  162 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE---CT-TSCEEESSCSSTTCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE---EC-CCcEEEeCCccccccc
Confidence            347889999999999999999998765444321     12233333 3332   22 2257999999976554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=3.5e-09  Score=81.31  Aligned_cols=127  Identities=17%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee------------------eEEEEE-------------
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT------------------CEMKTT-------------   63 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~------------------~~~~~~-------------   63 (277)
                      ++.++..|+++|++||||||++-.|...-. ..+....-.|.+                  ...+..             
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            445567899999999999999877752111 011000000000                  000000             


Q ss_pred             ---eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCc
Q 023779           64 ---VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK----DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV  136 (277)
Q Consensus        64 ---~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~  136 (277)
                         ...++..+.||||||...   .+.....++........    ..++-.++|+++...  ..+...+......++   
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~---  157 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN---  157 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC---
T ss_pred             HHHHHHcCCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC---
Confidence               001245689999999765   34444455555443321    236788999998721  222222222222222   


Q ss_pred             cCcEEEEEeCCCCCCc
Q 023779          137 FDYMIVVFTGGDDLED  152 (277)
Q Consensus       137 ~~~~ivv~nk~D~~~~  152 (277)
                        +--+|+||+|....
T Consensus       158 --~~~lI~TKlDe~~~  171 (213)
T d1vmaa2         158 --VTGIILTKLDGTAK  171 (213)
T ss_dssp             --CCEEEEECGGGCSC
T ss_pred             --CceEEEecccCCCc
Confidence              56689999997654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.83  E-value=1.3e-08  Score=83.40  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=59.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhCcCccCcEEEEEeC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG  146 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ivv~nk  146 (277)
                      |..+.||.|.|.+..         +.. .    ...+|.+++|+....   +.+...++ -+.+       ..-++|+||
T Consensus       143 g~d~iiiETVG~gq~---------e~~-~----~~~~D~~v~v~~p~~---GD~iQ~~k~gilE-------~aDi~vvNK  198 (323)
T d2qm8a1         143 GFDVILVETVGVGQS---------ETA-V----ADLTDFFLVLMLPGA---GDELQGIKKGIFE-------LADMIAVNK  198 (323)
T ss_dssp             TCCEEEEEECSSSSC---------HHH-H----HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEEC
T ss_pred             CCCeEEEeehhhhhh---------hhh-h----hcccceEEEEeeccc---hhhhhhhhhhHhh-------hhheeeEec
Confidence            456788888887642         111 1    134699999988762   12222111 1111       156899999


Q ss_pred             CCCCCcccccHHHHhcccCCchHHHHHhhcCCe-EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (277)
Q Consensus       147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~  210 (277)
                      +|..+.  .........    .+...+...... -........+|+.++.++++|.+.|..+...
T Consensus       199 aD~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         199 ADDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSTTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            997655  232222211    022222211100 0001122356888899999999999988754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=5.2e-10  Score=86.72  Aligned_cols=63  Identities=27%  Similarity=0.289  Sum_probs=35.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~   84 (277)
                      +..+.+++|++|||||||+|+|++.....++..     ...+|++..... . .++  -.||||||+-+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~-~-~~g--g~iiDTPG~r~~~l  163 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI-H-TSG--GLVADTPGFSSLEF  163 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE-E-ETT--EEEESSCSCSSCCC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE-e-cCC--CEEEECCccccccc
Confidence            346788999999999999999998765444321     122333332221 1 333  46999999976554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.79  E-value=2.4e-08  Score=76.43  Aligned_cols=129  Identities=13%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee------------------EEEEEe----------
Q 023779           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC------------------EMKTTV----------   64 (277)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~------------------~~~~~~----------   64 (277)
                      .-|...+..|+++|++||||||++-.|..... ..+....-.|.+.                  ......          
T Consensus         6 ~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~   84 (211)
T d1j8yf2           6 VIPDKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK   84 (211)
T ss_dssp             CSCSSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHH
Confidence            34555667899999999999999887752111 0110000000000                  000000          


Q ss_pred             ------eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccC
Q 023779           65 ------LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD  138 (277)
Q Consensus        65 ------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (277)
                            ...+..+.||||||..... .......++.......  .++-+++|+++....  ............++     
T Consensus        85 ~a~~~~~~~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----  154 (211)
T d1j8yf2          85 RGVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQ--KAYDLASKFNQASK-----  154 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GHHHHHHHHHHHCT-----
T ss_pred             HHHHHhhccCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCc--chHHHHhhhhcccC-----
Confidence                  0234578999999975422 1112233444444333  457888999887332  22222222222222     


Q ss_pred             cEEEEEeCCCCCCc
Q 023779          139 YMIVVFTGGDDLED  152 (277)
Q Consensus       139 ~~ivv~nk~D~~~~  152 (277)
                      .--+|+||.|....
T Consensus       155 ~~~lI~TKlDet~~  168 (211)
T d1j8yf2         155 IGTIIITKMDGTAK  168 (211)
T ss_dssp             TEEEEEECTTSCSC
T ss_pred             cceEEEecccCCCc
Confidence            34578999997654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1e-08  Score=78.49  Aligned_cols=75  Identities=15%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (277)
                      +..+.||||||...   .+....+++.......    ...++-.++|+|+...  ..+........+..+     .--++
T Consensus        91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEE
Confidence            34689999999654   2333444444443322    1236788999998722  222222222222222     46689


Q ss_pred             EeCCCCCCc
Q 023779          144 FTGGDDLED  152 (277)
Q Consensus       144 ~nk~D~~~~  152 (277)
                      +||.|....
T Consensus       161 lTKlDe~~~  169 (211)
T d2qy9a2         161 LTKLDGTAK  169 (211)
T ss_dssp             EECCTTCTT
T ss_pred             EeecCCCCC
Confidence            999997755

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.74  E-value=3.2e-08  Score=75.59  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHh---hc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---MA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (277)
                      +..+.||||||....   +.....++.....   .. ...++-.++|+++..+  ..+..........++     +--++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEE
Confidence            456899999997653   3333333333322   22 2356888999998733  233222222333333     45679


Q ss_pred             EeCCCCCCcc
Q 023779          144 FTGGDDLEDH  153 (277)
Q Consensus       144 ~nk~D~~~~~  153 (277)
                      +||+|.....
T Consensus       158 ~TKlDet~~~  167 (207)
T d1okkd2         158 VTKLDGTAKG  167 (207)
T ss_dssp             EECTTSSCCC
T ss_pred             EeccCCCCCc
Confidence            9999977553

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.69  E-value=6.4e-08  Score=73.95  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (277)
Q Consensus        68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~  147 (277)
                      +..+.||||||....   +.....++.......  .++-+++|+++..+  .........+.+.++     .--+++||+
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            456899999998753   444455565554433  56788999998622  233333333333333     355899999


Q ss_pred             CCCCc
Q 023779          148 DDLED  152 (277)
Q Consensus       148 D~~~~  152 (277)
                      |....
T Consensus       160 De~~~  164 (207)
T d1ls1a2         160 DGDAR  164 (207)
T ss_dssp             GGCSS
T ss_pred             Ccccc
Confidence            97654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.3e-07  Score=72.01  Aligned_cols=66  Identities=29%  Similarity=0.330  Sum_probs=45.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeeEEEEE--eeeCCceEEEEeCCCCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSA   84 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~liDtpG~~~~~~   84 (277)
                      -..|+++|+.++|||+|+|.|+|.. .|..+.+..++|.-.-....  ....+..+.++||.|+.+...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~  100 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  100 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccccc
Confidence            3689999999999999999999855 24445444445544432221  112345689999999987554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.27  E-value=1.5e-06  Score=65.94  Aligned_cols=31  Identities=19%  Similarity=0.097  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G   56 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKG   56 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCC
Confidence            4568999999999999999999998776665

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4e-06  Score=64.67  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG   55 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG   55 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            4578999999999999999999998876665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.7e-06  Score=65.48  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-+|+|+|++|+|||||++.|+|...+..|
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            5678999999999999999999998765554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.20  E-value=1.2e-06  Score=68.31  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            4578999999999999999999998876665

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=5.7e-06  Score=65.05  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+-.++|+|++|||||||+++|+|...+.+|
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCccCCCC
Confidence            35578999999999999999999998766555

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.18  E-value=4.9e-06  Score=64.53  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG   58 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            4578999999999999999999998876665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.07  E-value=5.1e-06  Score=61.43  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFK   46 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~   46 (277)
                      .+|+|+|++|+|||||++.|+|.-.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            379999999999999999999765433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.94  E-value=2.7e-06  Score=65.59  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +.+-.++|+|++|||||||++.|.|...+.+|
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCCCCCcc
Confidence            35578999999999999999999998776665

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.94  E-value=3.4e-06  Score=65.79  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++..++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   57 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhCCCCC
Confidence            45689999999999999999999998876665

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.92  E-value=3.2e-06  Score=65.49  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG   61 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   61 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCC
Confidence            4578999999999999999999998876665

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=8.1e-06  Score=65.07  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-.|+|+|++|+|||||++.|+|...+..|
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCcCCCc
Confidence            35578999999999999999999998765555

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=3.9e-06  Score=65.23  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G   57 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   57 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            4578999999999999999999998876665

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.87  E-value=3.3e-06  Score=65.01  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-.++|+|++|||||||++.|+|...+.+|
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG   55 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcCCCCC
Confidence            35578999999999999999999998876665

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.5e-06  Score=65.44  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-.++|+|++|||||||++.|+|...+.+|
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCCCcC
Confidence            45679999999999999999999998776555

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=6.7e-05  Score=58.99  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      ...++|||++|+|||+++..|...-.  .+..  +          ....+..++-+|...+........+....+...+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~--~~~v--p----------~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~  104 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV--QGDV--P----------EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLK  104 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH--HTCS--C----------GGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH--hCCc--c----------cccccceeEEeeechHhccCccchhHHHHHHHHHH
Confidence            35799999999999999999874322  1110  0          11345566677776666554444444455555554


Q ss_pred             hcCCCccEEEEEEeCCC-----CCCHHHHHHHHHHHHHhCcC
Q 023779           99 MAKDGIHAFLVVFSVTN-----RFSQEEETAVHRLPNLFGKN  135 (277)
Q Consensus        99 ~~~~~~~~~l~v~d~~~-----~~~~~~~~~~~~l~~~~~~~  135 (277)
                      ......++++|+=+++.     .-+++.......++..+..+
T Consensus       105 ~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg  146 (268)
T d1r6bx2         105 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG  146 (268)
T ss_dssp             HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC
T ss_pred             HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC
Confidence            43344456666655551     11223445566776665544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.84  E-value=4.8e-06  Score=65.34  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-+++|+|++|||||||++.|+|...+..|
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            35578999999999999999999998765554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=5.2e-06  Score=64.38  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      ..+..++|+|++|||||||++.|.|...+.+|
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCccccCC
Confidence            35578999999999999999999998776555

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.80  E-value=5.8e-06  Score=63.97  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      -.++|+|++|||||||++.|+|...+.+|
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G   53 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            47889999999999999999998876655

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=6.3e-06  Score=64.74  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCcCCCc
Confidence            34578999999999999999999998776665

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.78  E-value=4.1e-06  Score=64.95  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +.+-.++|+|++|||||||++.|.|...+.+|
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G   60 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcCCCCc
Confidence            34578999999999999999999998876666

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.70  E-value=8.8e-06  Score=60.30  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++|+|+|++|+|||||++.|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            8899999999999999999974

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.70  E-value=6.8e-06  Score=64.45  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~   48 (277)
                      +++-+|+|+|++|+|||||++.|+|...+..|
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCCcccc
Confidence            35679999999999999999999998776555

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=2.9e-05  Score=58.78  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+++|.+||||||+.+.|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999973

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.1e-05  Score=62.34  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ++-.++|+|++|+|||||++.|+|..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            56789999999999999999999954

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.2e-05  Score=57.24  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|+|++|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.49  E-value=3.2e-05  Score=56.61  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..+|+|+|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3458899999999999999999974

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=7.7e-05  Score=57.18  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      -+.++|.|.-|||||||+|.|+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            467899999999999999999854

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.00041  Score=57.44  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=43.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   98 (277)
                      +-+++|||++|||||+++..|...-.  .+..+            ....+..++-+|...+........+....+...+.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~--~~~vp------------~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~  108 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIV--KGDVP------------EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQ  108 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHH--HTCSC------------TTSTTCEEEEECC-----------CHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHH--hCCCC------------HHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHH
Confidence            34579999999999999987653221  11111            11345666677766665443333333444444443


Q ss_pred             hcC-CCccEEEEEEeCCCCC----CHHHHHHHHHHHHHhCcC
Q 023779           99 MAK-DGIHAFLVVFSVTNRF----SQEEETAVHRLPNLFGKN  135 (277)
Q Consensus        99 ~~~-~~~~~~l~v~d~~~~~----~~~~~~~~~~l~~~~~~~  135 (277)
                      ... ....++||+=+++.-+    +.+.....+.++..+..+
T Consensus       109 ~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg  150 (387)
T d1qvra2         109 EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG  150 (387)
T ss_dssp             HHHTTCSSEEEEECCC-------------------HHHHHTT
T ss_pred             HhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC
Confidence            322 2235667776665211    122234445666655443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.37  E-value=5.4e-05  Score=54.07  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|+|++||||||+++.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.35  E-value=4.2e-05  Score=55.79  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+|+|+|++||||||+.+.|.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            569999999999999999996

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.34  E-value=6.3e-05  Score=56.08  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++.+|+|+|++||||||....|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999997

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=4.7e-05  Score=56.73  Aligned_cols=83  Identities=17%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   97 (277)
                      .+..++++|++|+|||+++..|...-.  .+..+            ....+..++-+|...+........+..+.+...+
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp------------~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il  107 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVP------------EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL  107 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH--HTCSC------------GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH--hCCCC------------HHHcCceEEEeeHHHHhccCCccHHHHHHHHHHH
Confidence            345799999999999999998873221  11100            1145667778887666554443444555555555


Q ss_pred             hhcC-CCccEEEEEEeCC
Q 023779           98 GMAK-DGIHAFLVVFSVT  114 (277)
Q Consensus        98 ~~~~-~~~~~~l~v~d~~  114 (277)
                      .... ...+++||+=+++
T Consensus       108 ~e~~~~~~~iILfIDeih  125 (195)
T d1jbka_         108 NDLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHHSTTTEEEEEETGG
T ss_pred             HHHhcCCCcEEEEcchHH
Confidence            4322 2346788887776

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=5.2e-05  Score=57.40  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      +.-|+|+||+|||||||++.|+...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4678899999999999999998543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00011  Score=54.93  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++...|+|+|++||||||+...|+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999974

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=6.9e-05  Score=53.96  Aligned_cols=21  Identities=38%  Similarity=0.735  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.|+|+|++||||||+.+.|.
T Consensus         3 k~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            569999999999999999997

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.0018  Score=50.30  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..|++.||+|+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            36799999999999999999973

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=8.1e-05  Score=54.13  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|+|.+|||||||++.|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999873

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.22  E-value=8.2e-05  Score=54.08  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999974

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=0.00033  Score=54.39  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..|+|.||+|+|||+++++|.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            6799999999999999999973

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=0.00011  Score=54.60  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ....|+|.|++|||||||.+.|.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=6.4e-05  Score=55.57  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +-|+|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00017  Score=52.92  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +...-|+++|.+||||||++..++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999986

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00016  Score=52.47  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457788999999999999999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.14  E-value=0.00012  Score=54.64  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..|+|+|++||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999999973

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=0.00012  Score=53.83  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.|+|.|++||||||+++.|.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.11  E-value=0.00015  Score=52.78  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+..|+|+|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.00013  Score=53.86  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      +.|+|+||+||||||+++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56889999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00012  Score=53.77  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|.|++|+|||||+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.09  E-value=0.00012  Score=54.44  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+|+|+|++||||||+.+.|..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.07  E-value=0.00017  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++.|+|.|++||||||+.+.|..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36788889999999999999974

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.05  E-value=0.00021  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+..|.|+|.+||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00018  Score=52.90  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999986

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.98  E-value=0.00017  Score=52.14  Aligned_cols=21  Identities=29%  Similarity=0.629  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 k~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999986

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00016  Score=52.50  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++|+|+|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=0.001  Score=52.38  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      ...+|++|+|+|+..+++..+..+.++++    .   +|+++|+||+|....
T Consensus        13 i~~~DvIl~V~DaR~P~ss~~~~l~~~~~----~---Kp~IlVlNK~DLv~~   57 (273)
T d1puja_          13 LKLIDIVYELVDARIPMSSRNPMIEDILK----N---KPRIMLLNKADKADA   57 (273)
T ss_dssp             GGGCSEEEEEEETTSTTTTSCHHHHHHCS----S---SCEEEEEECGGGSCH
T ss_pred             HHhCCEEEEEEECCCCCCCCCHHHHHHHc----C---CCeEEEEECccCCch
Confidence            45669999999999777777655444432    1   489999999998866

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.97  E-value=0.00027  Score=52.56  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...+|+|+|++||||||+...|+.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00019  Score=53.27  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.96  E-value=0.00027  Score=57.17  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 023779           20 RTVVLLGRTGNGKSATGNSILGRK   43 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~~~   43 (277)
                      ..|+|.|++|+|||||+|+|++.-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00024  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+|+|+|++||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999973

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.93  E-value=0.00023  Score=52.44  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      +|+|+|++||||||+...|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999973

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00027  Score=53.52  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++.|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999886

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00028  Score=52.49  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+|+|+|++||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999873

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00027  Score=52.01  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+|+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999997

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.88  E-value=0.00029  Score=52.55  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..|.|+|++||||||+...|..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.0017  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +-|++.||+|+|||++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            5699999999999999999984

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.86  E-value=0.00024  Score=55.70  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .+.-|+|.|++|+|||||+.+|.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00031  Score=51.58  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+|+|+|++||||||..+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999986

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00031  Score=52.26  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 023779           22 VVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~   41 (277)
                      |+|+||+||||||+++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.79  E-value=0.00032  Score=51.08  Aligned_cols=21  Identities=19%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|++||||||+.+.|.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999986

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00021  Score=52.99  Aligned_cols=23  Identities=30%  Similarity=0.370  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++..|.|+|.+||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45788899999999999999996

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.71  E-value=0.00043  Score=51.54  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..++..|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999873

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.66  E-value=0.00049  Score=50.65  Aligned_cols=21  Identities=24%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      +.|+|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            456788999999999999996

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.00071  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++..|+|.|.+||||||+.+.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999885

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00064  Score=52.27  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+++.||+|+||||++++|++
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00084  Score=51.72  Aligned_cols=20  Identities=20%  Similarity=0.399  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      .+++.|++|+||||++..++
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            47899999999999998875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.022  Score=43.36  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..++|.|++|+||||++.+++.
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.001  Score=51.72  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....++|.|++|+||||+++.|..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0014  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ....++|.||+|+||||++.+|+..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999853

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.00083  Score=51.53  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+++.||+|+||||+++.|..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            489999999999999999974

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00085  Score=53.86  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+++||||||||.|.++|..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999999974

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.34  E-value=0.0011  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.+|+|-||+||||||....|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999973

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.0027  Score=48.23  Aligned_cols=70  Identities=21%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779          102 DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (277)
Q Consensus       102 ~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  180 (277)
                      -++|.+++|+++. +.+...-...+-.+....+  +  +.+||+||+|...+  ....+.+..     +.......|..+
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~--i--~pvIvlnK~DL~~~--~~~~~~~~~-----~~~~y~~~g~~v   77 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAND--I--QPIICITKMDLIED--QDTEDTIQA-----YAEDYRNIGYDV   77 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT--C--EEEEEEECGGGCCC--HHHHHHHHH-----HHHHHHHHTCCE
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC--C--CEEEEEeccccccc--HHHHHHHHH-----HHHHHhhccccc
Confidence            3678899998875 4555544333222232223  2  78899999998876  444444433     333334445444


Q ss_pred             EE
Q 023779          181 VL  182 (277)
Q Consensus       181 ~~  182 (277)
                      +.
T Consensus        78 ~~   79 (231)
T d1t9ha2          78 YL   79 (231)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.19  E-value=0.0016  Score=49.64  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..++|.|++|+||||+++.|..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.18  E-value=0.00068  Score=53.52  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+...|+|.|.+||||||+.++|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            344689999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0018  Score=51.62  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+..|+|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            456899999999999999998875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0003  Score=52.40  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+|+|++|+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999984

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.0092  Score=42.37  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~   42 (277)
                      ++..|++.|+-|+|||||++.|+..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhh
Confidence            4568999999999999999998743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0025  Score=47.85  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999997653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.06  E-value=0.0022  Score=48.22  Aligned_cols=24  Identities=25%  Similarity=0.273  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .++..|.|.|.+||||||+.+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999986

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0022  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .-|++.|++|+|||+++++|..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            5699999999999999999984

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.00  E-value=0.0012  Score=51.56  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+.+.|++|+|||++++.++.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            345679999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0022  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|.||+||||||....|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999973

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.92  E-value=0.0023  Score=47.90  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|.|..||||||+.+.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999885

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0026  Score=47.76  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|+|..||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            479999999999999999885

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.022  Score=42.87  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=30.2

Q ss_pred             CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779          102 DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (277)
Q Consensus       102 ~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~  152 (277)
                      -++|.+++|+.+. +.+...-...+-.+....+-    +.+||+||+|...+
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i----~pvIvlnK~DL~~~   56 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNEL----ETVMVINKMDLYDE   56 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTC----EEEEEECCGGGCCH
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeCcccCCH
Confidence            3679899999886 45655443322222222333    88999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0036  Score=49.26  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...+..|+|-|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3445899999999999999998774

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0026  Score=48.44  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .++|.||+|+||||+++.|+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999999743

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.78  E-value=0.0014  Score=52.26  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l   39 (277)
                      .-+|+|++|+||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4579999999999999988

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.76  E-value=0.0027  Score=49.27  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..|+|.|++|+|||||++.++
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Confidence            3578899999999999999886

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.003  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...|+|.|++|+|||+|+++|++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            36699999999999999999984

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.71  E-value=0.0025  Score=53.63  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+|+++||||||||-|.++|.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0022  Score=48.94  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+.|+|-|+.||||||+++.|..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.003  Score=47.82  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .++|.||+|+||||+++.|..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            389999999999999998863

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.019  Score=43.33  Aligned_cols=20  Identities=25%  Similarity=0.672  Sum_probs=17.1

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 023779           20 RTVVLL-GRTGNGKSATGNSI   39 (277)
Q Consensus        20 ~~i~lv-G~~g~GKStlin~l   39 (277)
                      +.|++. +..|+||||+.-.|
T Consensus         3 ~vIav~~~kGGvGKTtia~nL   23 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANL   23 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHH
Confidence            678888 88999999998666

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0055  Score=49.07  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +..+.-.++++||+|+|||.|..+|.
T Consensus        48 ~~~p~~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          48 EHKPVGSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             TTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchhHHHHHHHH
Confidence            34444579999999999999999987

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.55  E-value=0.0041  Score=51.59  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +..-|+|.|++|+||||++.+++.
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhh
Confidence            346799999999999999999875

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.072  Score=40.30  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...++|.|++.+||||+++++.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            3668899999999999999873

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.49  E-value=0.0043  Score=50.70  Aligned_cols=24  Identities=21%  Similarity=0.363  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++..+++.||+|+|||+|.++|++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0043  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++.|+|-|..||||||+++.|.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999999986

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0034  Score=52.05  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 023779           22 VVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~   40 (277)
                      -+|+|++|+||||++.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999984

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0041  Score=47.07  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .++|.|++|+||||++..|+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            388999999999999999974

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.34  E-value=0.0049  Score=45.86  Aligned_cols=20  Identities=20%  Similarity=0.337  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 023779           21 TVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~   40 (277)
                      .|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999986

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.33  E-value=0.005  Score=50.31  Aligned_cols=23  Identities=26%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +...++++||||||||-+.++|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            34669999999999999999986

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0054  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +++-|+|-|..||||||+++.|.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHH
Confidence            34678889999999999998875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.006  Score=46.54  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++.|+|=|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            47899999999999999999973

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0074  Score=44.84  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      .+..+.|.|++|+|||+|+..++.
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            346789999999999999988763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.88  E-value=0.008  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999853

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.81  E-value=0.051  Score=42.04  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      .+..+.+.|++|+|||+|+-.++....                     ..+..+.+|||.|-.+
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------------~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQ---------------------AAGGVAAFIDAEHALD  101 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHH---------------------HTTCEEEEEESSCCCC
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHh---------------------cCCCEEEEEECCccCC
Confidence            457789999999999999866652111                     2344567999999665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.63  E-value=0.0086  Score=44.21  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++...+++.||+++|||+|+++|+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3457899999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0062  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ...++|+|.+|+|||++++.|+
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4669999999999999998776

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.51  E-value=0.014  Score=42.22  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.-|++.|++|+||||+.-.|..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46799999999999999988763

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.51  E-value=0.11  Score=38.92  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..++|.|++.+||||+++++.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            358899999999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.43  E-value=0.015  Score=42.11  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      +.-|++.|++|+||||+.-.|..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46689999999999999988874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.011  Score=44.91  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....+.|.|++|+|||+|+..++-
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346789999999999999988863

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.014  Score=43.71  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +++-|+|=|.-||||||+++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHH
Confidence            35779999999999999999886

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.20  E-value=0.017  Score=46.10  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        16 ~~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..+.-.++++|++|+|||.+.+.|.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHH
Confidence            3333478899999999999999886

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.11  E-value=0.019  Score=44.86  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ....|+|+|..|+|||||+..+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.77  E-value=0.09  Score=40.61  Aligned_cols=43  Identities=23%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      .+..+.+.|++++|||+|+-.++....                     ..+..+.+|||-|-++
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aq---------------------k~g~~v~yiDtE~~~~   98 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQ---------------------KAGGTCAFIDAEHALD   98 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH---------------------HTTCCEEEEESSCCCC
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHH---------------------hCCCEEEEEECCccCC
Confidence            346788999999999999988763211                     1344567999998765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.76  E-value=0.014  Score=46.57  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 023779           21 TVVLLGRTGNGKSATGNSILGR   42 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~~   42 (277)
                      .++++|++|+|||.+.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4555799999999999999853

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.76  E-value=0.022  Score=40.83  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..-|++.|++|+||||+.-.|..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46799999999999999987763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.66  E-value=0.018  Score=43.79  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ....+.|.|++|+|||+|.-.++
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34678999999999999997765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.52  E-value=0.02  Score=42.84  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 023779           22 VVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        22 i~lvG~~g~GKStlin~l~~   41 (277)
                      +.|.|++|+|||-|+++++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999974

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.37  E-value=0.0099  Score=47.81  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 023779           21 TVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin~l~~   41 (277)
                      .|+|+|++|+|||++++++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            499999999999999998863

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.087  Score=40.56  Aligned_cols=42  Identities=21%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~   81 (277)
                      ...+.|.|++|+|||||+-.++....                     ..+..+.+|||-|-.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q---------------------~~g~~~vyidtE~~~~   95 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQ---------------------REGKTCAFIDAEHALD   95 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHH---------------------HTTCCEEEEESSCCCC
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHH---------------------cCCCEEEEEccccccC
Confidence            46788999999999999977762211                     1344567999998664

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.032  Score=42.33  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +...+.|.|++|+|||+|.-.++
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999998876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.19  E-value=0.024  Score=42.90  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 023779           19 ERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~   40 (277)
                      +-.++|.|++|+|||+|+..++
T Consensus        26 gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3568899999999999998776

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.11  E-value=0.027  Score=38.59  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=18.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .....+|.+++|+|||+++-.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            44677889999999999885543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.01  E-value=0.034  Score=43.10  Aligned_cols=58  Identities=14%  Similarity=-0.004  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~   79 (277)
                      +....+.+.|++++|||+|+++|...- ...+....  +..  ........+..+.++|-|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~~~--~~~--~f~l~~l~~k~~~~~~e~~~  159 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCVNW--TNE--NFPFNDCVDKMVIWWEEGKM  159 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEECCT--TCS--SCTTGGGSSCSEEEECSCCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhccc--cCC--CccccccCCCEEEEEeCCCc
Confidence            445788999999999999999987432 11111000  000  01122245667788887653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.90  E-value=0.035  Score=42.98  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++-.++|.|++|+|||||+..|.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34568899999999999987765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.88  E-value=0.027  Score=45.02  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 023779           20 RTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ++|.|=|.-|+||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            6899999999999999999963

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.86  E-value=0.033  Score=41.98  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+-.+.|.|++|+|||+|...++
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34678999999999999998775

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.67  E-value=0.031  Score=41.90  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .+..+.|.|++|+|||+|.-.++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34678899999999999986553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.037  Score=37.04  Aligned_cols=24  Identities=13%  Similarity=0.090  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779           17 NGERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      .++..|.+.|.+|+||||+.++|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            467899999999999999999995

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.53  E-value=0.039  Score=44.15  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      -.+|.|=|.-|+||||+++.|..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            37899999999999999999975

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.36  E-value=0.025  Score=45.27  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ..+|.|=|.-|+||||+++.|..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999974

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.03  E-value=0.046  Score=42.15  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l   39 (277)
                      ++|+|.|..|+||||+.-.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            67999999999999998554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.056  Score=41.65  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..++|+|++|+|||||+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            457799999999999997664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.07  Score=41.60  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=22.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      |--.+-+++|+|++|+|||+|+..|..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            334567999999999999999988863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.94  E-value=0.043  Score=42.91  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCcHHHHH
Q 023779           21 TVVLLGRTGNGKSATG   36 (277)
Q Consensus        21 ~i~lvG~~g~GKStli   36 (277)
                      .++|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3789999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.071  Score=41.42  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=18.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l   39 (277)
                      ..+.|.+.|+.|+||||+.-+|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHH
Confidence            3477889999999999977665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.67  E-value=0.29  Score=35.67  Aligned_cols=23  Identities=4%  Similarity=-0.012  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 023779           19 ERTVVLLGRTGNGKSATGNSILG   41 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~l~~   41 (277)
                      ...+++.|++|+|||+++..+..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998873

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.081  Score=42.76  Aligned_cols=20  Identities=35%  Similarity=0.523  Sum_probs=17.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATGNS   38 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStlin~   38 (277)
                      ....+|.|++|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            46788999999999998854

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.52  E-value=0.054  Score=42.70  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCcHHHHH
Q 023779           21 TVVLLGRTGNGKSATG   36 (277)
Q Consensus        21 ~i~lvG~~g~GKStli   36 (277)
                      .++|.|.+|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999876

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.12  Score=39.88  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=17.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 023779           18 GERTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l   39 (277)
                      ..+.|++.|+.|+||||+.-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3466777799999999987655

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.30  E-value=0.11  Score=40.31  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 023779           20 RTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l   39 (277)
                      ++|++-|..|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            67889999999999987554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.13  Score=37.78  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHh
Q 023779           20 RTVVLLGRT-GNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~-g~GKStlin~l~   40 (277)
                      +++.|.|.. ||||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            689999995 999999987764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.91  E-value=0.2  Score=38.70  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 023779           18 GERTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        18 ~~~~i~lvG~~g~GKStlin~l~   40 (277)
                      ++-|++|+|.+|+|||+|+-.+.
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHH
Confidence            45689999999999999987775

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.84  E-value=0.21  Score=37.96  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 023779           20 RTVVLLGRTGNGKSATGNSIL   40 (277)
Q Consensus        20 ~~i~lvG~~g~GKStlin~l~   40 (277)
                      ..|+|.|++|+||+++.+.|-
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            448999999999999999996

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.10  E-value=0.13  Score=34.67  Aligned_cols=20  Identities=30%  Similarity=0.172  Sum_probs=15.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHH
Q 023779           17 NGERTVVLLGRTGNGKSATG   36 (277)
Q Consensus        17 ~~~~~i~lvG~~g~GKStli   36 (277)
                      +++..++|.+++|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            34578889999999999443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.36  E-value=0.4  Score=35.40  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=16.8

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 023779           20 RTVVLL-GRTGNGKSATGNSI   39 (277)
Q Consensus        20 ~~i~lv-G~~g~GKStlin~l   39 (277)
                      +.|+|+ |..|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            567777 89999999998765

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.13  E-value=0.39  Score=34.59  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 023779           21 TVVLLGRTGNGKSATGN   37 (277)
Q Consensus        21 ~i~lvG~~g~GKStlin   37 (277)
                      ++++++++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47789999999996543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.63  E-value=0.21  Score=36.37  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=15.2

Q ss_pred             CeEEEEEcCCCCcHHHHH
Q 023779           19 ERTVVLLGRTGNGKSATG   36 (277)
Q Consensus        19 ~~~i~lvG~~g~GKStli   36 (277)
                      ...+++.+++|+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            457899999999999764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.51  E-value=0.44  Score=36.69  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHH
Q 023779           15 PSNGERTVVLLGRTGNGKSATGNSI   39 (277)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKStlin~l   39 (277)
                      |--.+-+++|+|.+|+|||+|+..+
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             cccCCceEeeccCCCCChHHHHHHH
Confidence            3345678999999999999998654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.29  E-value=0.35  Score=37.78  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=14.7

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 023779           20 RTVVLLGRTGNGKSATG   36 (277)
Q Consensus        20 ~~i~lvG~~g~GKStli   36 (277)
                      -.-+++|-+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            45689999999999976