Citrus Sinensis ID: 023787
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 277 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.725 | 0.728 | 0.729 | 3e-85 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.736 | 0.664 | 0.572 | 1e-74 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.736 | 0.664 | 0.568 | 2e-73 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.610 | 0.754 | 0.446 | 3e-41 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.610 | 0.754 | 0.446 | 6e-41 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.592 | 0.735 | 0.468 | 1e-40 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.606 | 0.753 | 0.429 | 8e-40 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.620 | 0.771 | 0.425 | 2e-38 | |
| Q2T9N3 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.620 | 0.771 | 0.436 | 4e-38 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.620 | 0.771 | 0.430 | 4e-38 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 174/207 (84%), Gaps = 6/207 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARS 274
FVSFF RAK LKPGGFFV+KEN+A++
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKN 202
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/234 (57%), Positives = 168/234 (71%), Gaps = 30/234 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARN 232
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/234 (56%), Positives = 165/234 (70%), Gaps = 30/234 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARN 232
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 112/177 (63%), Gaps = 8/177 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQ 172
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQ 172
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVA 170
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 9/177 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ +
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQ 171
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 9/181 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
FC LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
Query: 277 F 277
Sbjct: 175 I 175
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 9/181 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N
Sbjct: 4 EVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NF
Sbjct: 63 SY--ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNF 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
FC LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 115 FCCGLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
Query: 277 F 277
Sbjct: 175 I 175
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 9/181 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ +
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 174
Query: 277 F 277
Sbjct: 175 I 175
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 277 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.729 | 0.731 | 0.796 | 1e-93 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.729 | 0.731 | 0.757 | 1e-90 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.848 | 0.699 | 0.666 | 6e-90 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.729 | 0.726 | 0.740 | 5e-86 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.729 | 0.734 | 0.728 | 5e-86 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.736 | 0.608 | 0.725 | 2e-85 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.736 | 0.610 | 0.723 | 2e-84 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.725 | 0.728 | 0.729 | 2e-83 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.729 | 0.580 | 0.699 | 1e-82 | |
| 242032801 | 304 | hypothetical protein SORBIDRAFT_01g00629 | 0.736 | 0.671 | 0.597 | 5e-75 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/206 (79%), Positives = 181/206 (87%), Gaps = 4/206 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARS 274
VSFF RAK+GLKPGGFFVLKEN+AR+
Sbjct: 177 VSFFMRAKIGLKPGGFFVLKENVARN 202
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/206 (75%), Positives = 180/206 (87%), Gaps = 4/206 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARS 274
VSFF RAK+GLKPGGFFVLKEN+ARS
Sbjct: 177 VSFFNRAKIGLKPGGFFVLKENLARS 202
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 160/240 (66%), Positives = 189/240 (78%), Gaps = 5/240 (2%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRAKVGLKPGGFFVLKENIARS
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARS 262
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 173/208 (83%), Gaps = 6/208 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176
Query: 247 DFVSFFKRAKVGLKPGGFFVLKENIARS 274
DFVSFFK AKVGLK GGFFVLKENIARS
Sbjct: 177 DFVSFFKSAKVGLKAGGFFVLKENIARS 204
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 150/206 (72%), Positives = 177/206 (85%), Gaps = 4/206 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARS 274
+SFFKRAK+GLK GG F+LKENIARS
Sbjct: 177 ISFFKRAKLGLKAGGIFILKENIARS 202
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/208 (72%), Positives = 176/208 (84%), Gaps = 4/208 (1%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232
Query: 246 DDFVSFFKRAKVGLKPGGFFVLKENIAR 273
+DFVSFF AK LKPGGFFV+KEN+A+
Sbjct: 233 NDFVSFFNCAKGCLKPGGFFVVKENLAK 260
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/210 (72%), Positives = 177/210 (84%), Gaps = 6/210 (2%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230
Query: 245 DDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
D+DFVSFF RAK LKPGGFFV+KEN+A++
Sbjct: 231 DNDFVSFFNRAKGYLKPGGFFVVKENLAKN 260
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 174/207 (84%), Gaps = 6/207 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARS 274
FVSFF RAK LKPGGFFV+KEN+A++
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKN 202
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 144/206 (69%), Positives = 171/206 (83%), Gaps = 4/206 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AARE+L + DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARS 274
++FFKRAKVGLKPGG FVLKENIARS
Sbjct: 177 ITFFKRAKVGLKPGGLFVLKENIARS 202
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032801|ref|XP_002463795.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] gi|241917649|gb|EER90793.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 168/231 (72%), Gaps = 27/231 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIG-------------------------EDGEQQEKKT 103
M+ G DS G+ F +A EMW E++G E+G K+
Sbjct: 1 MDSRGFDSAGRVFSSATEMWAEELGSSATASTTAEAASPATATEGSGGASEEGAGDGKRK 60
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL+DRF A+ +HLVALD
Sbjct: 61 EWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLADRFGTAK--RHLVALD 118
Query: 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223
CGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AARESL D HKA NF+CVPLQD
Sbjct: 119 CGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAARESLTGYMDQGEDSHKAANFYCVPLQD 178
Query: 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
FTPE G+YDVIW+QWCIG L DDDF+SFF RAKVGLKP GFFVLKENIAR+
Sbjct: 179 FTPEEGKYDVIWIQWCIGQLPDDDFISFFNRAKVGLKPDGFFVLKENIARN 229
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 277 | ||||||
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.610 | 0.754 | 0.446 | 8.7e-40 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.610 | 0.754 | 0.446 | 1.8e-39 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.592 | 0.735 | 0.468 | 9.9e-39 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.606 | 0.753 | 0.429 | 4.3e-38 | |
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.689 | 0.707 | 0.406 | 8.9e-38 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.606 | 0.753 | 0.446 | 1.9e-37 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.606 | 0.753 | 0.429 | 6.3e-37 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.606 | 0.753 | 0.440 | 8e-37 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.606 | 0.753 | 0.435 | 1e-36 | |
| UNIPROTKB|Q2T9N3 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.606 | 0.753 | 0.440 | 1.3e-36 |
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 79/177 (44%), Positives = 112/177 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQ 172
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 79/177 (44%), Positives = 114/177 (64%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQ 172
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 81/173 (46%), Positives = 108/173 (62%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVA 170
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 76/177 (42%), Positives = 114/177 (64%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ +
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQ 171
|
|
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 83/204 (40%), Positives = 123/204 (60%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
FLD A+ +N D ++ N++ V LQDFT E +YD IW+QW IGHL D DF+
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192
Query: 250 SFFKRAKVGLKPGGFFVLKENIAR 273
F K+ L P G +K+N A+
Sbjct: 193 EFLKKCMDSLTPNGIICIKDNCAK 216
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 79/177 (44%), Positives = 109/177 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 76/177 (42%), Positives = 108/177 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 78/177 (44%), Positives = 107/177 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEGV 174
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 77/177 (43%), Positives = 107/177 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ +
Sbjct: 118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 174
|
|
| UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 78/177 (44%), Positives = 108/177 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ +
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 277 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 8e-95 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 8e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-04 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 3e-04 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 8e-95
Identities = 101/175 (57%), Positives = 131/175 (74%), Gaps = 8/175 (4%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275
LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K GLKP GF V+KEN+A++
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQNG 167
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + LA
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKP 261
+ + F C + E +D+I +QWC DD LKP
Sbjct: 74 AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKP 127
Query: 262 GGFFVL 267
GG
Sbjct: 128 GGLLAF 133
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +DV+ + HL D + LKPGG V+
Sbjct: 54 PD-----ESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + L V ++ L+ AR++ A
Sbjct: 3 LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDA 56
Query: 222 QDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268
++ PE +DVI + HL +D F + A+ LKPGG VL
Sbjct: 57 EELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-06
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + + LL E ++ L+AA E LA + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL-----DV 55
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265
L + G +DV+ + HL D + + + LKPGG
Sbjct: 56 LDAIDLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR+ + L + V ++ L+ A+E L + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-------KVRFVVAD 53
Query: 221 LQDFTPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGG 263
+D E G +D++ + +L+ + + A L+PGG
Sbjct: 54 ARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + L + V ++ L+ ARE+ P + F
Sbjct: 6 LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL--GPRIT----FVQGD 59
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +D +++ G L + LKPGG VL
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--V 219
L+ G+GIGR T L + +V L+ + ES+ +N +K F C V
Sbjct: 42 LELGAGIGRFTGEL-AKKAGQVIALDFI--------ESVIKKNESINGHYKNVKFMCADV 92
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D G D+I+ W + +L+D + + +R LK GG+ +E
Sbjct: 93 TSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142
|
Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 277 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.86 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.84 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.82 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.82 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.81 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.8 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.79 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.79 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.79 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.79 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.79 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.75 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.75 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.74 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.73 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.72 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.72 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.72 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.71 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.71 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.69 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.69 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.69 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.68 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.67 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.67 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.67 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.67 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.67 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.66 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.65 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.64 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.63 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.63 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.62 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.62 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.61 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.58 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.58 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.58 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.57 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.56 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.55 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.55 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.55 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.55 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.54 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.53 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.53 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.53 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.52 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.52 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.52 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.5 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.49 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.48 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.45 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.45 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.44 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.44 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.43 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.43 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.43 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.43 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.42 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.41 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.41 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.41 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.39 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.39 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.38 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.38 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.38 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.37 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.36 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.35 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.34 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.34 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.34 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.34 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.34 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.29 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.28 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.28 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.24 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.24 | |
| PLN02366 | 308 | spermidine synthase | 99.23 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.23 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.23 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.23 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.22 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.22 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.21 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.21 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.21 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.2 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.18 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.18 | |
| PLN02476 | 278 | O-methyltransferase | 99.16 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.16 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.14 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.13 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.12 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.11 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.1 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.07 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.07 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.06 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.05 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.05 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.02 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.93 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.93 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.92 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.92 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.9 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.9 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.88 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.88 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.88 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.88 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.86 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.85 | |
| PLN02823 | 336 | spermine synthase | 98.85 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.84 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.83 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.83 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.75 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.73 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.73 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.71 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.71 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.67 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.66 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.63 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.63 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.62 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.62 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.62 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.58 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.58 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.57 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.54 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.51 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.51 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.51 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.5 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.46 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.46 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.46 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.44 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.41 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.36 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.31 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.3 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.28 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.28 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.28 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.27 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.21 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.18 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.18 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.17 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.17 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.14 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.14 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.1 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.08 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.07 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.06 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.05 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.01 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.0 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.97 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.96 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.91 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.9 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.85 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.84 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.83 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.83 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.81 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.81 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.77 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.76 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.75 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.74 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.69 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.67 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.63 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.6 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.57 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.56 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.43 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.42 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.35 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.33 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.32 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.19 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.14 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.14 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.07 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.04 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.02 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.99 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.99 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.95 | |
| PHA01634 | 156 | hypothetical protein | 96.91 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.86 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.85 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.66 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.62 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.41 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.41 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.35 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.28 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.14 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.12 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.94 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.86 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.77 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.61 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.6 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.5 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.5 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.46 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.45 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.41 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.29 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.28 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.23 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.2 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.17 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.98 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.97 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.96 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.69 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.6 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.48 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.25 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.24 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.05 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.03 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.9 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.89 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.62 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.6 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.33 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.21 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.18 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 92.97 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.94 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.66 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.57 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.48 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.42 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 92.39 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.35 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.24 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.67 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 90.93 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 90.86 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.83 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.77 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.63 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.53 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 90.27 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 90.22 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.98 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.77 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.34 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.16 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.01 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 88.86 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 88.59 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.47 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 88.44 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.15 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.0 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 87.93 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.86 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.79 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.37 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.36 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 87.33 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 87.28 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.5 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 86.4 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.3 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 86.01 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 85.22 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 84.58 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 84.57 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 84.54 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 83.83 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 83.53 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 82.79 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 82.64 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.37 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 82.32 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.22 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 81.85 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 81.29 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 80.83 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 80.29 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.2 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 80.07 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-29 Score=205.35 Aligned_cols=167 Identities=54% Similarity=1.056 Sum_probs=133.4
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC
Q 023787 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (277)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (277)
.+.||.++.+||++++.+.+||++||+.+++.|+.+++.||..+.....+ ......++||+|||.|+.|..++.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999987654321 1345679999999999999999888899
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCC
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (277)
+|+.||+++.+++.|++.+.... ....++++..++++.+++++||+||+.|++.|++++|+..+|++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccC------CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998876521 356889999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEecCCCCCC
Q 023787 262 GGFFVLKENIARSDI 276 (277)
Q Consensus 262 GG~lii~e~~~~~~~ 276 (277)
||++++.||++..++
T Consensus 154 ~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 154 NGVIVVKENVSSSGF 168 (218)
T ss_dssp EEEEEEEEEEESSSE
T ss_pred CcEEEEEecCCCCCC
Confidence 999999999987663
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=179.72 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=112.4
Q ss_pred cCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC
Q 023787 125 GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..|+.+++...-+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+++|+|+.||+.|+++....
T Consensus 22 ~~YD~~n~~~S~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 22 KKYDLMNDLMSFGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHHhhcccccCcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc
Confidence 334444433334444445554444443 347899999999999999999877533 8999999999999999999875
Q ss_pred CCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+. .+++|+++|++++|+++++||+|.+++.|++++ |...+|++++|+|||||++++.|...+.
T Consensus 99 ~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 99 GV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred Cc------cceEEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 54 339999999999999999999999999999999 7779999999999999999999976543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=179.26 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHH
Q 023787 118 ASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDA 195 (277)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ 195 (277)
..|+.+...|+.+++....+....+...+.+.+. ..++.+|||+|||||.++..+++... .+|+++|+|+.|++.
T Consensus 11 ~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~---~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 11 KMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG---LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp --------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC---CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 3444445555554443322323333333322222 45778999999999999998886643 289999999999999
Q ss_pred HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|+++....+. .+++++++|++++++++++||+|++++.+++++ |...++++++|+|||||++++.|...+.
T Consensus 88 a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 88 ARKKLKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999876443 479999999999999999999999999999999 6779999999999999999999976654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=168.96 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=109.4
Q ss_pred hHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcE
Q 023787 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEV 183 (277)
Q Consensus 104 ~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v 183 (277)
.+.+.+..||+.... +..+..++..........+...+..........++.+|||||||+|.++..+++.+. +|
T Consensus 83 ~f~~~a~~WW~~~g~-----~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~-~V 156 (322)
T PLN02396 83 KFSAIADTWWHSEGP-----FKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA-TV 156 (322)
T ss_pred HHHHHHHHhcCCCCC-----chHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC-EE
Confidence 444556688875321 112222333333333334433332111101123567999999999999998886655 69
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
+|+|+|+.|++.|+++....+. ..++.+++++++++++++++||+|++..+++|++ +...+++++.++|||||
T Consensus 157 ~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG 229 (322)
T PLN02396 157 TGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTIPNG 229 (322)
T ss_pred EEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcCCCc
Confidence 9999999999999988654322 2468999999988887778999999999999999 56699999999999999
Q ss_pred EEEEEec
Q 023787 264 FFVLKEN 270 (277)
Q Consensus 264 ~lii~e~ 270 (277)
.+++...
T Consensus 230 ~liist~ 236 (322)
T PLN02396 230 ATVLSTI 236 (322)
T ss_pred EEEEEEC
Confidence 9999864
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=165.49 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=96.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.. + .+|+|+|+|+.|++.|+++...... ....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 4467899999999999999887663 3 2799999999999999887532100 002468999999999999889999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+|++++++||++ +...++++++|+|||||++++.|...++
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999998 6779999999999999999999876543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=136.10 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.9
Q ss_pred EEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhh
Q 023787 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~ 241 (277)
||+|||+|..+..+++....+|+++|+|+.+++.++++... .++.+...|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999877455899999999999999999875 345599999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 242 ~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 996 788999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=162.15 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=96.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|..+..+++.+..+|+|+|+|+.|++.++++....++ ..++.|+++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 56789999999999999998877555799999999999999998766544 3568999999999998889999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..+++|++ +...+++++.++|||||+|++.+.+
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999998 6679999999999999999998754
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-20 Score=152.98 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=116.1
Q ss_pred CCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHH
Q 023787 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~a~~~ 199 (277)
|+.+++....+.+..+.+.+...+. +..+.++||++||||..+..+++... .+|+++|+||.||..++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 4445666666677777777776666 67789999999999999999987633 3899999999999999999
Q ss_pred hCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
....++. ...++.|+++|++++|+++++||..++.+.+.+++ ++++.+++++|+|||||+|.+.|-...
T Consensus 150 a~~~~l~---~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 150 AKKRPLK---ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred HhhcCCC---cCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 8665442 12358999999999999999999999999999999 777999999999999999999886543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=153.16 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=96.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+++|+|+.|++.|+++... ..++.+.+.|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 457789999999999999988765444799999999999999998754 246889999998888888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+++|++..+...++++++++|||||+|+++|.+.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999999987788899999999999999999998754
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=134.39 Aligned_cols=108 Identities=24% Similarity=0.214 Sum_probs=87.3
Q ss_pred CCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~V 234 (277)
|+.+|||+|||+|..+..+++. ...+|+++|+|+.|++.|+++....+. ..++++++.|+ ...... +.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 4679999999999999999983 333799999999999999999833222 57899999999 333333 579999
Q ss_pred ecch-hhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~-~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.+ +++++. .++...+++++.+.|+|||++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9999 666444 35778999999999999999999763
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=150.30 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=92.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||.|.++..+++.++ .|+|+|+|+.+++.|+.+....++ .+++.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccEEEE
Confidence 678999999999999999998886 499999999999999999887643 477888888877655589999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|++ +...+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVP--DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999 5558999999999999999998653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=146.60 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=91.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEEE
Confidence 567999999999999999998766 599999999999999988766443 3478888898877665 57999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.++||+++++...+++++.++|||||++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999988889999999999999999976654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=149.82 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=90.9
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+.+|||+|||+|.++..|++.+. .|+|+|+|+.|++.|+++.......+.....+++|.+.+++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 57899999999999999997776 59999999999999999965544433333345778888888765 569999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+++|+. |+..++..+.+.|||||.++++...
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 7779999999999999999998653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-19 Score=149.64 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=95.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.. . .+|+|+|+|+.|++.+++++...+. .+++++++|..++++++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 4567899999999999999888764 3 2799999999999999998865432 468899999988887778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|++..++++++ +...+++++.++|+|||++++.|...+
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999999998 667999999999999999999886543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=149.23 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=94.3
Q ss_pred CCccEEEeeccccHHHHHHHHh--CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
++.+|||+|||+|..+..+++. .+ .+++++|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCCE
Confidence 5689999999999999888763 22 2799999999999999999876443 34689999999887754 5999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|+++.++||+++++...++++++++|||||.|+++|.+..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 9999999999977788999999999999999999997643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=151.61 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcce
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 214 (277)
+..........+.+.+. ..++.+|||||||+|.++..+++++..+|+|+++|+.+.+.+++++...|+ ..++
T Consensus 43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence 44444444444444444 789999999999999999999998545799999999999999999988776 4678
Q ss_pred eEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++...|..+++ .+||.|++..+++|++.+++..+++++.++|||||++++...+
T Consensus 115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 88999988765 4899999999999999889999999999999999999987554
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=148.37 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++.++++++..+|+|+++|+++.+.+++++...|+ ..++++...|..++. +.||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999988756899999999999999999988776 457888888888875 459999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+|..+++|+..+....+|+.+++.|+|||.+++.....++
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999998765543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=137.87 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=91.5
Q ss_pred CCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
++.+|||+|||+|.++..++.. ++ .+++|+|+|+.|++.|++++...++ .+++|++.|+.+++ ++ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCee
Confidence 5689999999999999999854 32 3899999999999999998766543 47999999999976 44 7999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++..+++|++ +...+++++.+.|++||.+++.+..
T Consensus 76 ~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 6669999999999999999998764
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=145.97 Aligned_cols=111 Identities=14% Similarity=0.265 Sum_probs=94.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.++.+|||+|||+|..+..+++.. + .+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence 366799999999999999888753 2 2799999999999999998765322 24688999999988765 589
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|+++.++||+++++...++++++++|||||.++++|++..
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 99999999999988888999999999999999999998653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=140.46 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .+.+...|+...+++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 457999999999999999988766 599999999999999988765432 256677777665554 58999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.++||++.++...++++++++|||||++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999877888999999999999999776643
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-18 Score=128.88 Aligned_cols=96 Identities=24% Similarity=0.469 Sum_probs=81.9
Q ss_pred EEEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
|||+|||+|..+..++... + .+++++|+|+.|++.++++.... ..++++++.|+.+++..+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998775 2 48999999999999999998653 23689999999998877789999999
Q ss_pred ch-hhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 237 ~~-~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
.. +++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55 5999999999999999999999998
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=142.32 Aligned_cols=102 Identities=18% Similarity=0.348 Sum_probs=88.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.++++... ..++++|++++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence 356789999999999999887665 4699999999999999987532 4678899999888888999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.++++++ +...++.++.++|+|||.++++...
T Consensus 109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999988 6779999999999999999998543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=145.56 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ ++++.++|+.++. ++++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence 456789999999999999999877543 799999999999999763 3678889988774 4579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+++.++||++ +...++++++++|||||++++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 66799999999999999999863
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=144.90 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||||..+..+++....+|+|+|+|++|++.|+++. .++++|++++++++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999888774347999999999999998641 2467899999998899999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
.+++||++ +...++++++|+|||.
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc
Confidence 99999998 6779999999999994
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-18 Score=145.93 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 567999999999999999987765 699999999999999999876544 356889999987764 4457999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+..+++|++ +...+++++.++|||||++++..
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999998 55699999999999999998864
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=134.94 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=88.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999888763 3479999999999999998753 25677888877 6777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+++.+++|++++++..+++++.|++ ++.+++.|...+
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999999999888999999999998 578888886543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=143.53 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.++++....+ .++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 346999999999999999988776 59999999999999998876543 257777888877655 478999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..++||+++++...+++++.++|+|||++++.+
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999998889999999999999999977754
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=144.35 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=89.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+..++......+. ..++.+..++++++++ +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 35689999999999999999988877899999999999865433211110 2468999999999887 67999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|..+++|.. +...+++++++.|+|||.+++.+.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999988 667999999999999999998654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=133.52 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=88.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.++||+|||.|+.+.+|+++|+. |+++|.|+..++.+++.....++ .++..+.|+.+..++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecchhcccc-CCcCEEE
Confidence 35689999999999999999999996 99999999999999887765433 488899999988876 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|++.+.+..+++.+...++|||++++...
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 99999999999999999999999999999888543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=134.32 Aligned_cols=126 Identities=12% Similarity=-0.026 Sum_probs=94.9
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC------CCCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~------~~~~~~ 211 (277)
...++...+.... ..++.+|||+|||.|..+..|++++.. |+|+|+|+.+++.+.+....... ......
T Consensus 19 p~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 19 VNPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 3445555544321 235679999999999999999988886 99999999999987543221100 000113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+++++++|+.++... .+.||.|+-..+++|++.+....+++.+.++|||||++++.
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4689999999987643 35799999999999999989999999999999999976554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=140.83 Aligned_cols=110 Identities=24% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..++... .. +|+++|+|+.|++.|+++....+. .++++..+|+.++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 4577899999999999887666553 32 699999999999999998765443 467899999998888778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|+++.++++.+ +...+++++.++|||||+|++++...
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999988 66689999999999999999987653
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=139.18 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=86.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++...+ .+|+|+|+|+.|++.|+++.. ++.++..|+.++.. +.+||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQP-PQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCC-CCCccE
Confidence 45678999999999999998987754 389999999999999998753 37788889887654 359999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+++.++||++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 6669999999999999999986
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=150.59 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=94.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ..++.|.+.|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3467899999999999999888765447999999999999999876532 346899999999888777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|..+++|++ +...++++++++|||||++++.+.+.
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9999999998 66799999999999999999998654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=136.46 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=90.8
Q ss_pred cEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||||||+|..+..+++.++ .+|+|+|+|+.+++.+++++...++ ..++.+...|+...+++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 799999999999998987764 3799999999999999999876554 45788999998766554 5899999999
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++|++ +...++++++++|||||++++.+..
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999998 6779999999999999999998864
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=140.14 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=86.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..++.+|||||||+|.++..++..++..|+|+|+|+.|+..++. .... ..++.+...++++++.. .+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~--------~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN--------DKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc--------CCCeEEEECCHHHCCCC-CCc
Confidence 34678999999999999998888877789999999999986533 2222 24577888888888754 489
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+|..+++|.+ +...+|++++++|||||.|++.+.
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999999999998 667999999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=133.52 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=90.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..++. +++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999999887654 68999999999999998764 247889999999887778999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.++||+. +...++.++.++|+|||.+++.+.
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999998 667999999999999999999864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-18 Score=126.78 Aligned_cols=95 Identities=27% Similarity=0.433 Sum_probs=62.1
Q ss_pred EEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc---CCCCCCCCCCceeEEecc
Q 023787 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~fD~Vi~~ 237 (277)
||||||+|.++..+++.... +++++|+|+.|++.+++++..... .+...... +..+... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDP-PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhccc-ccccceehhh
Confidence 79999999999999988543 899999999999888888765321 22233333 3322222 2599999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
.++||++ ++..++++++++|||||+|
T Consensus 74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 9999996 7889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=137.49 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=88.5
Q ss_pred CCCccEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHhCCC----CCC---------------
Q 023787 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~a~~~~~~~----~~~--------------- 206 (277)
.++.+|||+|||||. ++..+++.+. .+|+|+|+|+.|++.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4444444332 27999999999999999854110 000
Q ss_pred --CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 207 --~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
......++.|.+.|+.+.+++.++||+|+|.++++|+++++...+++++++.|+|||++++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00112468999999999877678999999999999999888889999999999999999996
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-17 Score=130.89 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee-EEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD 232 (277)
......|||+|||||..-.++--.-..+||++|+++.|-+.+.+.+.+.. ..++. |+.++.++++ .++++||
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYD 147 (252)
T ss_pred ccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCee
Confidence 34456789999999998774321122379999999999999999887752 34555 8899999998 7789999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.|++..++.-.. +..+.|+++.|+|+|||++++.|++..
T Consensus 148 tVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 148 TVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred eEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 999999998877 777999999999999999999999864
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=140.77 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+++... .+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998876643 3799999999999999987542 35788999999988887899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++.+++|++ +...++++++++|||||++++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999998 5558999999999999999988654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=147.06 Aligned_cols=109 Identities=23% Similarity=0.408 Sum_probs=92.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (277)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++.... ..++.+++.|+.. +++++++||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence 355799999999999999988764 4799999999999988764332 3568899999863 4566789999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++.++++|++++++..++++++++|||||++++.|++..
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 9999999999987789999999999999999999998743
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=148.16 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=91.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
++.+|||+|||+|..+..++...+. +|+|+|+|+.|++.|+++.... ..++.++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 5689999999999999888876544 8999999999999999886542 235778889988876 67789999
Q ss_pred EecchhhhcC-----------ChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~-----------~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+++.++|++ +.++...++++++++|||||.+++.|.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 9999999875 23578899999999999999999998753
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=128.19 Aligned_cols=98 Identities=28% Similarity=0.380 Sum_probs=79.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+...++ +++|+|+|+.+++. . +......+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R-----------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T-----------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h-----------hhhhhhhhhhhhhccccchhhHh
Confidence 4678999999999999998877666 79999999999998 1 12222232233334568999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+.+++|++ +...+++++.++|||||++++.+...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67799999999999999999998754
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=133.79 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+|||+|||+|..+..++..++ .+++++|+|+.+++.+++++...+. ..++.+...|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccEE
Confidence 568999999999999999988874 5899999999999999998865433 356889999998887767899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..++++++ +...+++++.++|+|||.+++.|...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=138.40 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=138.6
Q ss_pred CchhhhhhhhhHHHHhhhhhccccCCCCCCcccccccCCCCCCCccccHHHHHHHHhCCCCcchhhh--hhHH-------
Q 023787 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--TQWY------- 106 (277)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~~~y------- 106 (277)
.-.-++.+||-+..++.+.+.+... -+....+.+.|....| .+++.++.+...... .....+ ..++
T Consensus 77 ~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~-~~~~ar~~~l~~~~~~~~~ 151 (342)
T PRK09489 77 CDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLN-KIDSARRCGLYHGRLEKQP 151 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCcc-ccccceeEEEEEEeccccC
Confidence 3445889999999999998877663 2235567888999999 778888777764211 100000 0000
Q ss_pred -HHHhhhcccccccccccccCCCCccc-ccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cE
Q 023787 107 -REGISYWEGVEASVDGVLGGFGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (277)
Q Consensus 107 -~~~~~yW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (277)
-...+||..... .+-.+.....+.. ..+......+...+. .....+|||+|||+|.++..+++.++. +|
T Consensus 152 ~~~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la~~~p~~~v 223 (342)
T PRK09489 152 VFDADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLARHSPKIRL 223 (342)
T ss_pred CCcccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHHHhCCCCEE
Confidence 012345543211 0001111222221 123333344444332 223458999999999999999887664 79
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCC---hhhHHHHHHHHHhcCC
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLK 260 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~---~~d~~~~l~~~~r~Lk 260 (277)
+++|+|+.|++.+++++..+++ ..++...|.... .+++||+|+++..+|+.. ......+++++.+.||
T Consensus 224 ~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 224 TLSDVSAAALESSRATLAANGL-------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred EEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999877543 245666676542 247899999999998632 2346789999999999
Q ss_pred CCcEEEEEecC
Q 023787 261 PGGFFVLKENI 271 (277)
Q Consensus 261 pGG~lii~e~~ 271 (277)
|||.++++-|.
T Consensus 295 pgG~L~iVan~ 305 (342)
T PRK09489 295 SGGELRIVANA 305 (342)
T ss_pred cCCEEEEEEeC
Confidence 99999998663
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-16 Score=130.19 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.++.+|||+|||+|..+..+++.++. +++++|+++.+++.++++... ..++++..+|+.+.++++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence 36789999999999999999888774 899999999999999998752 35688899999888776679999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+++.++++++ +...+++++.+.|+|||++++.+...
T Consensus 110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988 67799999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=128.04 Aligned_cols=104 Identities=28% Similarity=0.425 Sum_probs=84.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|++++.. ..+++|.+.++.++.+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P-~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWP-EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCC-CCCeeEEE
Confidence 34578999999999999998755 56899999999999999999987 4789999999988754 48999999
Q ss_pred cchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++.+++|+.+ +++..++.++...|+|||.+++..
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999985 679999999999999999999964
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.7e-16 Score=139.91 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=89.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++... ..+++...|..++ +++||.|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999988876545799999999999999998753 2367777887665 3689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++..++..+++++.++|||||++++.+.
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999877888999999999999999999764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=129.44 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=92.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++... + .+++++|+|+.+++.++++.... ..++.+...|+..+++++++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 4577899999999999999988775 2 37999999999999999883321 3568899999988887778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+++|++ +...+++++.++|||||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 667999999999999999999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=128.18 Aligned_cols=104 Identities=22% Similarity=0.368 Sum_probs=93.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.....+|.|+|||+|..|..|+++++. .++|+|.|+.|++.|++++. +.+|..+|+.++..+ .++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----------~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----------DATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----------CCceecccHhhcCCC-Cccch
Confidence 456789999999999999999988876 89999999999999998864 488999999999865 58999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
++++.+|++++ |-..+|.++...|.|||++.+. +|..
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 99999999999 7779999999999999999987 5543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=126.91 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=85.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++...+ .+|+++|+|+.|++.|+++....++ .+++++++|+.++.. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 478999999999999998886544 3899999999999999999877654 348999999988776 57999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+... . ++..+++.+++.|||||++++.+.
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 8752 2 566899999999999999999864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-16 Score=131.20 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=83.9
Q ss_pred CCCccEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (277)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++... .++.+.+.+...++.++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999998887653 332 799999999999999987643 2355666666666556689
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+|+++.++||+++++...+++++.++++ |.+++.|..
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999999999998778899999999998 566665543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=126.04 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=88.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCC------CCCCCCCcceeEEEcCCCCCCCC-C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN------HMAPDMHKATNFFCVPLQDFTPE-T 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~-~ 228 (277)
.++.+|||+|||.|..+..|+++++. |+|||+|+.+++.+.+...... ........++++.++|+.++... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35679999999999999999988886 9999999999998754321110 00011135788999999988643 2
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+.||+|+-..+++|++.+....+++.+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999999999999999999999999999997444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=132.61 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=95.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456689999999999999999988765 8999997 7999999998877655 45789999998765554 3799
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++..++|+.+++....+++++++.|+|||++++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999877778899999999999999999997543
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=124.88 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.++++....++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 3679999999999999988766543 799999999999999988766443 358999999988743 46999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 43 34478899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=130.07 Aligned_cols=160 Identities=30% Similarity=0.472 Sum_probs=126.9
Q ss_pred hhhhHHHHHhhhcccccccccc-cccCCCCccc---ccccchHHHHHHHHhccCCC-c-CCCCCccEEEeeccccHHHHH
Q 023787 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN-A-RNNQHLVALDCGSGIGRITKN 174 (277)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~-~-~~~~~~~VLDiGcGtG~~s~~ 174 (277)
....+|+++..||.+...+.+| ++++|...+. .++..+..++..+....+.+ . +...-...+|+|.|+|+.+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3446789999999999999999 7888887655 67777777777777643321 1 122347899999999999999
Q ss_pred HHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHH
Q 023787 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (277)
Q Consensus 175 l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~ 254 (277)
++. .+.++.++++....+..++..+. .| ++.+-+|+..- .| +-|+||+.|++||.+|+++.++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---------V~~v~gdmfq~-~P--~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---------VEHVAGDMFQD-TP--KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---------cceeccccccc-CC--CcCeEEEEeecccCChHHHHHHHHH
Confidence 998 55569999999999988888774 21 55566666554 22 3469999999999999999999999
Q ss_pred HHhcCCCCcEEEEEecCCCC
Q 023787 255 AKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~ 274 (277)
|+..|+|||.+++.|++.+.
T Consensus 261 C~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHhCCCCCEEEEEeccCCC
Confidence 99999999999999997653
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=113.13 Aligned_cols=103 Identities=18% Similarity=0.099 Sum_probs=82.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++..+. +|+++|+|+.+++.++++....+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 345679999999999999999887553 899999999999999988765433 3577888877653 22235899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++....+ ....+++++.+.|||||++++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999977543 3458999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=127.01 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCC--CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD 232 (277)
++.+|||+|||+|..+..++...+. +|+++|+|+.|++.|++++...+. .++.++++|+ ..++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 5679999999999999998876543 799999999999999998865432 4688999998 6655 5567999
Q ss_pred EEecchhhhcC------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++++...+. .......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99987654322 11124679999999999999999974
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=119.50 Aligned_cols=122 Identities=24% Similarity=0.269 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
......++.+.+.. .+..+|||+|||+|.++..++..++. +|+++|+|+.+++.+++++..+++ .+
T Consensus 16 ~d~~t~lL~~~l~~-------~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~ 82 (170)
T PF05175_consen 16 LDAGTRLLLDNLPK-------HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------EN 82 (170)
T ss_dssp HHHHHHHHHHHHHH-------HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------TT
T ss_pred CCHHHHHHHHHHhh-------ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------cc
Confidence 33444555555542 25679999999999999999887776 799999999999999999987654 22
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCCh---hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~---~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++++..|+.+... +++||+|+++..++.-.+ .-...+++.+.+.|||||.+++.-+
T Consensus 83 v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 83 VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 8888888876443 579999999998776553 2367899999999999999987643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=124.84 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|++++...+. ..++.|.+.|+.+.+ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence 3578999999999999999887654 699999999999999999865432 236889999988765 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+++|++.+++..+++++.+++++++++.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999999998778889999999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=124.76 Aligned_cols=217 Identities=19% Similarity=0.176 Sum_probs=143.1
Q ss_pred cCchhhhhhhhhHHHHhhhhhccccCCCCCCcccccccCCCCCCCccccHHHHHHHHhCCCCcc--hhhhhhHHH-----
Q 023787 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWYR----- 107 (277)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~~~~~~y~----- 107 (277)
..-.-|+-|+|-++..+.+.+.+...- +....+.+.|...+| ..+..+|..+........ -+....+|.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455668889999999999988777643 234567778888898 788888887775432111 111111221
Q ss_pred --HHhhhcccccccccccccCCCCcc-cccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cE
Q 023787 108 --EGISYWEGVEASVDGVLGGFGNVN-EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (277)
Q Consensus 108 --~~~~yW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (277)
....+|.......+..+-+...++ ...+....++|.+.+. .....+|||+|||.|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 112333332222222222223332 2334555555555554 334459999999999999999988875 89
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChh---hHHHHHHHHHhcCC
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD---DFVSFFKRAKVGLK 260 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~---d~~~~l~~~~r~Lk 260 (277)
+.+|+|...++.|++++..++. .+..++..|+.+-. + ++||+|+|+-.||--... -..+++..+.+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999988654 22244555554322 2 399999999999843211 13489999999999
Q ss_pred CCcEEEEEec
Q 023787 261 PGGFFVLKEN 270 (277)
Q Consensus 261 pGG~lii~e~ 270 (277)
+||.|.|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999877
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=129.22 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+.....++...+. .....+|||+|||+|.++..++++++. +|+++|+|+.|++.|++++..++... ..+
T Consensus 213 LD~GtrllL~~lp-------~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~~ 282 (378)
T PRK15001 213 LDIGARFFMQHLP-------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---LDR 282 (378)
T ss_pred cChHHHHHHHhCC-------cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc---Cce
Confidence 4444455554443 223469999999999999999888765 89999999999999999986543210 135
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++...|..... ++++||+|+|+..+|.. ++.....+|+.+.++|+|||.++++-|
T Consensus 283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 283 CEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 788888765432 33589999999888753 334467899999999999999999854
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=120.69 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...+. ..+++++.+|..+.....++||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45678999999999999987776542 3799999999999999998876543 2358889999877554557999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..++++++ .++.+.|+|||++++.
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999999887766 3577899999999885
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=122.37 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+. .|+++|+|+.|++.|++++...+. ..++.+..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 3567999999999999999987766 499999999999999998865433 2468888888543 347899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+..+++|+++++...+++++.+.+++++.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988888999999998765555443
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-15 Score=116.87 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=86.8
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||+|||.|.+...|++.++. .++|+|+|+.+++.|+...+..++ ...++|.+.|+.+-.+..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 9999999999999999999887 599999999999999998888766 3449999999998777678999998655
Q ss_pred hhhcC------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHL------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~------~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+ +...+...+..+.+.|+|||+|+|.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 44433 2223456789999999999999986
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=117.39 Aligned_cols=106 Identities=21% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+ .++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc--CCcccEEEE
Confidence 457899999999999999887776 79999999999999999986532 34778888876643 358999999
Q ss_pred chhhhcCChh-------------------hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~-------------------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+..+++.++. ....+++++.++|||||.+++.+...
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 9888766521 14678999999999999999987654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=127.51 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+... ....++.|.+.|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence 467999999999999999987765 69999999999999999876431100 0023578888888664 378999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..+++|++++....+++.+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 999999987777778888875 45555544
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=126.07 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
...+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++. .++.+.++|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 457899999999999998886643 25899999999999998764 347889999999998889999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+ + ..++++.|+|||||++++...
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 2 246789999999999999754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=124.29 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=87.5
Q ss_pred CCccEEEeeccccHHHHHHHH-hC-CC-cEEEEeCCHHHHHHHHHHhCC-CCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLI-RY-FN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~-~~-~~-~v~gvD~S~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
++.+|+|||||.|..+..++. .. +. +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 678999999998855444443 33 33 799999999999999999853 444 4679999999988643346899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++. +++++..++...+++++.+.|+|||++++.
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997678889999999999999999986
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=116.64 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..+++.++. +|+++|+|+.+++.++++....++ .++++++.|... .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 346789999999999999999877654 899999999999999998765433 357788887642 22 358999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++....++ +..+++.+.+.|+|||++++..
T Consensus 101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 998876443 4478999999999999998865
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=119.17 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=87.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+ ..+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCccEE
Confidence 4678999999999999998887654 59999999999999998875432 24677777777664 234789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++ +...+++++.+.|+|||.+++...
T Consensus 119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999998 666899999999999999998754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=120.13 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (277)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|+++....++ .+++++++|+.++. ++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 4568999999999999999988765 899999999999999988766543 47899999987653 4456899
Q ss_pred EEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++++...+.... ....++++++++|||||.|++..
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 99988764432211 12479999999999999999863
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=124.61 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCC----
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~---- 229 (277)
++.+|||+|||+|..+..+++... .+|+++|+|+.|++.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 557899999999999999998863 479999999999999998875421 024567788998763 33221
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
...++++..+++++++++...+|+++++.|+|||.|+|.-+..
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 3445556678999998899999999999999999999875443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=117.82 Aligned_cols=146 Identities=20% Similarity=0.322 Sum_probs=108.7
Q ss_pred HHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC---c
Q 023787 106 YREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---E 182 (277)
Q Consensus 106 y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~---~ 182 (277)
-..+..||+........ .+.-.+.++..-+.++++... ....+||++|||.|.....+++-... .
T Consensus 32 ~~~~~k~wD~fy~~~~~-----------rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 32 EREASKYWDTFYKIHEN-----------RFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hcchhhhhhhhhhhccc-----------cccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 34567899875443332 223345566666666554211 22238999999999999999977655 8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeEEecchhhhcCChhhHHHHHHHHHhc
Q 023787 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258 (277)
Q Consensus 183 v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~ 258 (277)
|.++|.||.+++..+++.... ..++...+.|++.- +++.+++|.|++.++|..++++....++.+++++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 999999999999999887653 23444445555432 3567899999999999999999999999999999
Q ss_pred CCCCcEEEEEec
Q 023787 259 LKPGGFFVLKEN 270 (277)
Q Consensus 259 LkpGG~lii~e~ 270 (277)
|||||.+++.|-
T Consensus 173 lKPGG~llfrDY 184 (264)
T KOG2361|consen 173 LKPGGSLLFRDY 184 (264)
T ss_pred hCCCcEEEEeec
Confidence 999999999874
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=123.13 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++...+++ ..++.+...+... ..+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccccc--ccCCCceEEEE
Confidence 5689999999999999988776666899999999999999999876554 2345555554322 23468999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+...+ .+..++.++.++|||||+++++...
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 86543 4557999999999999999998654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=117.00 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=81.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++... .+|+++|+++.+++.+++++...+. .+++++++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 45788999999999999987776532 3799999999999999999876543 468999999877655567999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++.....+++ ..+.+.|||||++++..
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999987765544 34667899999998853
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=115.43 Aligned_cols=126 Identities=13% Similarity=-0.022 Sum_probs=97.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC------CCCCCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~------~~~~~~~~ 211 (277)
...+|...+.... ..++.+||+.|||.|..+..|+..++. |+|+|+|+..++.+.+..... +.......
T Consensus 28 pnp~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence 3345544444332 235689999999999999999999996 999999999999986643211 00001113
Q ss_pred cceeEEEcCCCCCCCC---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 212 KATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+++.++|+.+++.. .++||+|+-..+|++++++...++.+.+.++|+|||.+++.
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4789999999998642 26899999999999999999999999999999999988876
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-14 Score=117.39 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=76.5
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchh
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~ 239 (277)
.++|+|||+|..+. .++.++.+|+++|+|+.||+.|++.....-. +....+...++.++.-.+++.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccc-----cCCccccccccccccCCCcceeeehhhhh
Confidence 89999999996666 4456688899999999999999987654321 22333444555555544789999999999
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 240 IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 240 l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++. ++.+++.++|+||+.|-++..
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 99985 568999999999988744443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=116.06 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++.... +|+++|+++.+++.|++++...++ .+++++++|..+.....++||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 457789999999999999988766432 599999999999999999877553 468899999877554446899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887765544 3467889999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=108.69 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=86.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi 235 (277)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. ..++++++.|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 358999999999999999988845899999999999999999887554 456899999988775 5678999999
Q ss_pred cchhhhcCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..+.... ......+++++.++|||||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998766421 1235689999999999999998863
|
... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=117.14 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+. .++.+...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998887665 599999999999999998765322 2578888888776543 37899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|+. +...+++++.++|+|||.+++.+.
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999998 666999999999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-15 Score=121.21 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
..+..++||+|||||..+..+- ....+++|||+|.+|++.|.++--... ..++++..+. ..+.+||
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~YD~-----------L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLYDT-----------LYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred CCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccchHH-----------HHHHHHHHHhhhccCCccc
Confidence 3447899999999999999765 445579999999999999988754322 2334443332 3457999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE-ecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~ 273 (277)
+|++..|+.|+. ++..++.-+...|+|||.|.|+ |..+.
T Consensus 191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCC
Confidence 999999999999 8889999999999999999998 65544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=119.56 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=83.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHH--HHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR--ESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
-.+.+|||||||.|..+..++.+++..|+|+|+++-..-..+ +++... ...+.+....+++++. .+.||+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEcCcchhhccc-cCCcCE
Confidence 367899999999999999999999999999999988766533 222210 1223344457777776 579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|.+||.|.. +....|.+++..|+|||.+++-.
T Consensus 186 VF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999988 77799999999999999999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=115.19 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=82.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++...+ .++.+++.|+.+. .++++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhh-ccCCCeeEEE
Confidence 4567999999999999998887655589999999999999999876532 2467788888664 3456899999
Q ss_pred cchhhhcCCh-------------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..+...+. ..+..+++++.++|||||++++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9854332211 125678899999999999999863
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=118.93 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|..+..++..+..+|+++|+|+.+++.|++++..+++ ...+.+... +.+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence 36789999999999999977766665799999999999999999876543 112222221 12799999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++...+ .+..++.++.++|||||+++++...
T Consensus 185 ani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILAN-----PLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECc
Confidence 875432 4557899999999999999998654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=115.83 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=91.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
.....+|||+|||+|..+..++++.. .++++||+.+.|.+.|+++.+.+++ ..++++++.|+.++. ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhccccccc
Confidence 34478999999999999998887744 4899999999999999999988776 688999999999885 334579
Q ss_pred eEEecchhhhcCCh----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|+|+-.+.-... -+++++++.+.++|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99999866543321 24789999999999999999986
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=115.43 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=81.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..++.++++|+.+. .++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~-~~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAA-LPGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhc-cCCCCccEEE
Confidence 4568999999999999999877653 799999999999999999876554 34688999998543 2345899999
Q ss_pred cchhh-------------hcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l-------------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++... +|-+. +....+++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87321 11110 12467899999999999999873
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=112.35 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=76.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (277)
..++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+.++... ..++.++.+|..+. .+. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56788999999999999998887643 3799999999999988777654 24678888887652 122 5
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+||+|++.... +.....+++++.++|||||.+++
T Consensus 141 ~~D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 141 KVDVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred cCCEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEE
Confidence 79999854221 11234578999999999999999
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=110.24 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++++|..+.. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5678899999999999999887653 2 3799999999999999999876543 246788888887642 223689
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|.|++... ..++..+++.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 12567899999999999999987
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=108.50 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=72.4
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
+|+|+|+.|++.|+++....+.. ...+++++++|+.++++++++||+|++.+++++++ +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 58999999999998776431110 02468999999999999888999999999999998 77799999999999999
Q ss_pred EEEEEecCCCC
Q 023787 264 FFVLKENIARS 274 (277)
Q Consensus 264 ~lii~e~~~~~ 274 (277)
.+++.|...++
T Consensus 76 ~l~i~d~~~~~ 86 (160)
T PLN02232 76 RVSILDFNKSN 86 (160)
T ss_pred EEEEEECCCCC
Confidence 99999876553
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=110.67 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=80.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...++ .++++...|..+...+.++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 4577899999999999998766554 4799999999999999999876543 35888888876543334789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++...+++++ +.+.+.|+|||++++.-.
T Consensus 149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 9988766543 456789999999988643
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=111.31 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
.++.+|||||||+|.++..+++... ..|++||+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 4667999999999999998888753 2799999987 21 1 134789999998853
Q ss_pred CCCCceeEEecchhhhcCChh--h-------HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~--d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+.+++||+|+|..+.++.... + ...+++++.++|||||.|++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 456789999998876654321 1 246899999999999999997543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-13 Score=119.52 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (277)
..+..+||||||+|.++..++...+. .++|+|+++.|++.+.+++...++ .++.++++|+..+ .++++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCcee
Confidence 34568999999999999999988765 899999999999999998876554 5688999998764 35678999
Q ss_pred EEecchhhhcCChh----hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|++++...+.... ....++++++|+|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 99987654332211 1257999999999999999986
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=114.90 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=81.1
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999999877653 899999999999999999876554 346899999986532 34589999987
Q ss_pred hhh-------------hcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 238 ~~l-------------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
... +|-|. +....+++++.+.|+|||++++-
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 321 11111 12467899999999999999983
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=94.68 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=82.9
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi~~~ 238 (277)
+|+|+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|..+... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999998886444589999999999999985332211 3568888888888764 457899999999
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++++ .+....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99884 347779999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=109.82 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=73.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~V 234 (277)
++.+|||+|||+|.++..++......++|+|+|+.|++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 5679999999999999988765544689999999999998652 25677777765 3 2556799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
+++.++||++ +...+++++.|.++++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRHA 105 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCeE
Confidence 9999999998 6668999998887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=110.53 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..... +++++|+|+.+++.++++....++ .++.++++|+.+ .+++++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhc-cCcCCceeEEE
Confidence 4468999999999999999877544 899999999999999998876543 358889999866 33457999999
Q ss_pred cchhhhc------CCh------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGH------LTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~------~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+.. +.. .....+++++.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8654321 111 11347899999999999999985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=108.02 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Vi 235 (277)
.+.-|||||||+|..+..+...+. .++|+|+|+.|++.|.++- ...+++.+|+- .+|+.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e-----------~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE-----------LEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh-----------hhcCeeeeecCCCCCCCCCccceEE
Confidence 578899999999999998877774 5999999999999998742 12466777775 4678899999999
Q ss_pred cchhhhc---------CChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGH---------LTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~---------~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++.+ .|...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 7665543 35556888999999999999999986
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=112.95 Aligned_cols=104 Identities=24% Similarity=0.247 Sum_probs=81.2
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|+++....++ ..+++++++|+.+. .+..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~-~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP-LAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc-CcCCCccEEEEC
Confidence 68999999999999999877653 899999999999999999876544 23588999988663 233489999987
Q ss_pred h-------------hhhcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 238 ~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. ++.|-|. .....++..+.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 2223221 14667899999999999998873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=111.91 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=87.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|+|||+|+|.++..++++++. +++.+|. |.+++.+++ . .+++++.+|+. -+++. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhcc--ccc
Confidence 345578999999999999999999888 9999998 889999888 1 56999999998 45553 999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCC--cEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG--G~lii~e~~~~ 273 (277)
|++.+++|+.++++...+|+++++.|+|| |+|+|.|.+.+
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99999999999999999999999999999 99999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=106.60 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...+. .+++++.+|+.+. ......+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45678999999999999998876543 3799999999999999998866443 3578888887542 21113457
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|+.... .++..+++++.+.|+|||++++...
T Consensus 112 ~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654321 2466899999999999999998754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=112.52 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=81.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++...++.+..+++|+|+.|..++.|++|...++.. ..+.....+....+ ..++||+|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEEe
Confidence 78899999999999999988888889999999999999999999887652 11112222222222 2369999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|-.- +-+..+...+.+.|||||+++++-.+
T Consensus 236 NILA-----~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 236 NILA-----EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred hhhH-----HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 8742 24568999999999999999998644
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=112.86 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
..+.+||+||||+|..+..+++. ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999998865 3458999999999999999987532110 001467889999987653 23578999
Q ss_pred EecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433322222 257899999999999999874
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-13 Score=110.87 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=92.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC-CCCC-----CCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHM-----APDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~-----~~~~~ 211 (277)
....|..++.. +. ..++.+||..|||.|.....|+++++. |+|+|+|+..++.+.+.... .... .....
T Consensus 22 ~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 22 PNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp STHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 33445555443 11 456789999999999999999998884 99999999999998554322 1000 00113
Q ss_pred cceeEEEcCCCCCCCCC-CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 212 KATNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~~-~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+++++++|+.+++... ++||+|+=..+|+-++++...+..+.+.++|+|||.+++
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 46899999999986543 589999999999999999999999999999999999433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=113.42 Aligned_cols=108 Identities=14% Similarity=-0.027 Sum_probs=85.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. .++|+|+++.|++.+++++...++ .++.+.+.|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 45678999999999999887665444 699999999999999999876554 23778899999988777899999
Q ss_pred ecchhhhcC-------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++..+..- ..+-...+++++.++|||||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 997543211 11225789999999999999998864
|
This family is found exclusively in the Archaea. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=113.33 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++...++.+..+|+++|++|.+++.|++|...+++. .++.. ....+. ..++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----~~~~v--~~~~~~--~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----DRIEV--SLSEDL--VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----TCEEE--SCTSCT--CCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----eeEEE--EEeccc--ccccCCEEE
Confidence 366799999999999999888778889999999999999999999887662 33322 222222 237999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++-... -+..++..+.++|+|||+++++-..
T Consensus 231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 231 ANILAD-----VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ECCCHH-----HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 987743 5667889999999999999998543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-12 Score=103.50 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=82.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++...+.. ...+.+...|+.+.. .+.+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPF-RGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccccc-cccCceEEE
Confidence 356789999999999999998774 57999999999999999988654431 112677888876633 335899999
Q ss_pred cchhhhcCC-------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~-------------------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+...+ ...+..+++++.++|||||.+++...
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 876543211 12356789999999999999888643
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=114.83 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=81.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC----CCCCCCCCcceeEEEcCCCCCC----CC-
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE----NHMAPDMHKATNFFCVPLQDFT----PE- 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~----~~- 227 (277)
++.+|||+|||-|.....+.......++|+|+|...|+.|+++.... .-......-...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 77899999999998888788888889999999999999999998210 0000001234667777765431 22
Q ss_pred -CCceeEEecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 -TGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -~~~fD~Vi~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
...||+|-|.+++||. +.+....+|+++...|+|||+|+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3599999999999987 4555777999999999999999986
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=102.97 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=77.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||+|||.|.+...|.+.......|+|++++.+..+.++ .+..+++|+.+. .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 37899999999999999988775444799999999998888764 256788888764 278899999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
||++.++.++. +...+|+++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVR--RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHh--HHHHHHHHHHHh---cCeEEEE
Confidence 99999999998 555899999776 4455544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=107.39 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=80.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..++...+ .+++++|+|+.+++.|++++. ... ..++.++..|+.+.. .+++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~~~~~d~~~~~-~~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-----GARVEFLQGDWFEPL-PGGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----CCcEEEEEccccCcC-CCCceeEE
Confidence 4567999999999999999987764 389999999999999999976 111 356889999885532 24689999
Q ss_pred ecchhhhc------CC------------------hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~------~~------------------~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++....- +. -+....+++++.++|+|||++++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 98643211 11 012467889999999999999984
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=99.83 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=92.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 217 (277)
..-++-+....+. +.++.+++|||||||..+..++..++. +|+++|-++++++..++|+...+. .++..+
T Consensus 19 K~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv 89 (187)
T COG2242 19 KEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVV 89 (187)
T ss_pred HHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEE
Confidence 3334444333443 778999999999999999999965665 899999999999999999887664 678889
Q ss_pred EcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 218 CVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 218 ~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++..+......+||.|+.... . .+..+++.+...|||||++++.
T Consensus 90 ~g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 90 EGDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred eccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 9988776433337999999988 3 4558999999999999999985
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=107.23 Aligned_cols=103 Identities=15% Similarity=-0.023 Sum_probs=76.8
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET 228 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 228 (277)
...++.+|||+|||+|.++..++.... ..|++||+|+.|++...+.... ..++.++..|+... ....
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhccc
Confidence 356788999999999999999987753 2799999999876555554432 24577888887542 2223
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+||+|++.... + ++...++.++.++|||||.|+|.
T Consensus 201 ~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 201 PMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEE
Confidence 589999987742 2 24456777999999999999995
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=112.47 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.|++.|+++....+ .+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcchhccccccCCCccEE
Confidence 4568999999999999988866543 79999999999999999986542 368899999865432 23589999
Q ss_pred ecchhhhcCCh-----------------------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 235 WVQWCIGHLTD-----------------------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 235 i~~~~l~~~~~-----------------------~d~~~~l~~~~r~LkpGG~lii 267 (277)
+|+.....-.+ +-...+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99764211000 1145778888899999999876
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-12 Score=108.80 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
.++.+|||||||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++. ..+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence 35678999999999999988877654 899999999999999999765322 357889999976542 22368999
Q ss_pred Eecchhh-hcCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCI-GHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l-~~~~~~-d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++...- ...+.. ....+++++.+.|+|||++++.
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9975311 111110 1258999999999999999984
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=110.42 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=79.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++++|..+...+.++||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456789999999999999988876542 599999999999999998876543 457888888876655556899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++...+.+++ ..+.+.|+|||++++..
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 999987665543 23567899999998853
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=101.89 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+.-++ +...+|+.+|..+...+.|++++...++ .|+.+.++|...--.+.++||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999666 4444799999999999999999988775 46899999988765556899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.......+| + .+.+.|||||++++-..
T Consensus 143 ~Vtaaa~~vP--~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--E------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--H------HHHHhcccCCEEEEEEc
Confidence 9999988777 2 34567999999999754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=107.17 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=80.8
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.+++++. ++++++.|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence 45699999999999999887664 3479999999999999998742 477899999887543 6899999
Q ss_pred cchhhhcCChhh------------------HHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d------------------~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+++.+..+ +.+++.....+|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 999988865432 246778888999999988775
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-12 Score=106.51 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=83.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++ ..+++++.+|+.+.. .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence 3567999999999999888876543 3899999999999999999988766 457899999886641 12
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|++... .+....++..+.+.|+|||.+++ ||+
T Consensus 142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~ 179 (234)
T PLN02781 142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNT 179 (234)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcC
Confidence 368999987543 23566889999999999998766 443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=99.56 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=79.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++++ ..+++++|+++.|++.+++++.. ..+++++.+|+.++++++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 446679999999999999999977 45799999999999999998864 246889999999988776679999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++..++ +..+.+..+++.. .+.++|.+++.
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9987664 3433444444432 24588888776
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=102.56 Aligned_cols=118 Identities=22% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCCccEEEeeccccHH----HHHHHHh---CCC---cEEEEeCCHHHHHHHHHHh------C-------------CC--
Q 023787 155 NNQHLVALDCGSGIGRI----TKNLLIR---YFN---EVDLLEPVSHFLDAARESL------A-------------PE-- 203 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~----s~~l~~~---~~~---~v~gvD~S~~~l~~a~~~~------~-------------~~-- 203 (277)
.....+|+..||+||.- +..+.+. ... +|+|+|+|+.+++.|++-. . ..
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 34678999999999963 3323331 122 8999999999999998732 0 00
Q ss_pred CCC-CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 204 NHM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 204 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
+.. .......+.|...|+.+.....+.||+|+|.+|+.|++.+....+++.+++.|+|||+|++. |.+.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 000 11123578999999988444457999999999999999999999999999999999999996 5554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=101.32 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=71.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ . ..++.+++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457789999999999999988876533 69999999854 1 134677888876642
Q ss_pred -CCCCceeEEecchhhh--------cCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 -PETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~--------~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+.++||+|++..+.+ |.. .++...++..+.++|+|||++++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3456899999865322 211 123468999999999999999985
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=104.20 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=77.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~V 234 (277)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++..++ .+++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999988876543 79999999999999999986532 3678888765321 12579999
Q ss_pred ecchhhh------cCChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIG------HLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~------~~~~~------------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.... .++++ -+..++..+.++|+|||++++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9886432 11111 1357888889999999999975
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-12 Score=103.17 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.7
Q ss_pred HhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
+.+.+..-+..|+.+..||......+...+-..+...+.. .++...|.|+|||.+.++..+- ... .|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 3344444455555555555443333444444444444442 3456799999999999987542 223 4999998
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 189 S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+ .+-....+|+...|.+++++|++|++.+|+.. ++..++.++.|+|||||.+.|.
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 52 22346779999999999999999999998763 6778999999999999999999
Q ss_pred ecC
Q 023787 269 ENI 271 (277)
Q Consensus 269 e~~ 271 (277)
|..
T Consensus 158 EV~ 160 (219)
T PF05148_consen 158 EVK 160 (219)
T ss_dssp EEG
T ss_pred Eec
Confidence 864
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=115.17 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..++.++++|+.+. .+.++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~-~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFEN-IEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhh-CcCCCccEEE
Confidence 3468999999999999988876543 899999999999999999876544 34678888887542 2346899999
Q ss_pred cchhhh--------------cCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIG--------------HLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~--------------~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (277)
++.... |-|. +.+..+++.+.+.|+|||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 864211 1110 1245678889999999999987
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=103.46 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=76.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..++..... .|+++|+.+...+.|++++...+. .++.+.++|......+.++||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 668899999999999999977655332 699999999999999999986543 478999998766544557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++......+| ..+.+.|++||++++.-
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 999998876555 23566799999999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-11 Score=110.62 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (277)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...|+ .++.+++.|..+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 45778999999999999998887643 2799999999999999999887654 35888999988765 335
Q ss_pred CceeEEecc------hhhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||.|++. .++++-++ .+ ...++.++.+.|||||+++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999953 34444332 11 3578999999999999998875
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=109.54 Aligned_cols=111 Identities=20% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~f 231 (277)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ ...+.+..+|...... +.++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 55778999999999999998887654 3799999999999999999987554 2234446666654433 45689
Q ss_pred eEEecc------hhhhcCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~------~~l~~~~~~-------d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++. +++++.++- + ...+|.++.++|||||+++++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999842 355554421 1 35799999999999999999854
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-11 Score=110.03 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ .++++.+.|+.++. ++++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc-cCCCCC
Confidence 45678999999999999988876532 3799999999999999999877654 36888999988765 346899
Q ss_pred EEecc----h--hhh-------cCChhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQ----W--CIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~----~--~l~-------~~~~~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++. . ++. +.+.++ ...+|.++.+.|||||+++++..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99952 1 111 122222 24689999999999999999754
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-11 Score=105.30 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
..+.+||++|||+|..+..+++.. ..+|++||+++.|++.|++...-..+.. ....++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888653 2489999999999999997321100000 011468899999887753 3346899
Q ss_pred EEecchhhh---cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~---~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++...-. ....---..+++.+++.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999874311 11111125799999999999999988754
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-11 Score=109.05 Aligned_cols=109 Identities=19% Similarity=0.136 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ ++.+++.|+.+.+ +..++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 45778999999999999999988765 3799999999999999999877543 3578888987653 234689
Q ss_pred eEEecchh------hhcC-------Chhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWC------IGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~------l~~~-------~~~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++... +.+- ...+ ...++.++.+.|||||+++++..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99994331 1111 1111 34789999999999999998753
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=105.41 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=95.3
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcce
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 214 (277)
+.....++...+.... ..+...++|+|||-|.....+-+.+...++|+||+...++.|+++..+-........-.+
T Consensus 99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 3444455555554333 246678999999999999988888888999999999999999998764211111111246
Q ss_pred eEEEcCCCCC------CCCCCceeEEecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 215 NFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 215 ~~~~~d~~~~------~~~~~~fD~Vi~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.+|-..- ++.+.+||+|-|.+++||. +.+....+++++.+.|+|||+||-+
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 7888875432 2344459999999999985 4555778999999999999999865
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=103.95 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
+++.+||+||||.|..+..+++.. ..+|+.||+++.+++.|++.+...+. ....++++++.+|...+. .++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999888653 24899999999999999998864321 112468999999975542 2246899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++...-.+.+... -..+++.+++.|+|||++++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999865433322111 347899999999999999764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=103.68 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+. .....+++++..|..++. ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888765 45899999999999999998754221 111346777777765431 113689999
Q ss_pred ecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
++.......+... ...+++.+++.|+|||++++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222222 357899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=95.59 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C------CCCc
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P------ETGR 230 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~------~~~~ 230 (277)
+|||||||||..+.+++...+. ...-.|+.+..+.-.+......++.+... -+..|+...+ . ..++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-----P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-----PLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-----CeEeecCCCCCccccccccCCCC
Confidence 6999999999999999988876 67778988888766666655554432222 1234444332 1 2468
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
||.|++.+++|-++++..+.+|+.+.++|+|||.|++--....+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 99999999999999999999999999999999999997655443
|
The function of this family is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=99.41 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=73.6
Q ss_pred CccEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
+.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|+++.. ++.+++.|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5799999999999999887653 2279999999999999998753 36788899877654 368999
Q ss_pred EecchhhhcCChh----------hHHHHHHHHHhcCCCCcE
Q 023787 234 IWVQWCIGHLTDD----------DFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 234 Vi~~~~l~~~~~~----------d~~~~l~~~~r~LkpGG~ 264 (277)
||++-.+.-.... -...++..+.++++||+.
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999876633211 145688999997777665
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-11 Score=102.93 Aligned_cols=99 Identities=24% Similarity=0.256 Sum_probs=76.7
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||+|||+|..+..++...+. +|+++|+|+.+++.|++|...+++ .++.++..|+.+-. .++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~~--~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEPL--RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccccc--CCceeEEEeCC
Confidence 7999999999999999988775 899999999999999999988654 23444555544322 24899999885
Q ss_pred hhhcCChh-------------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDD-------------------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~-------------------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. |++.+ -...++.++.+.|+|||.+++-
T Consensus 185 P--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 P--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred C--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 4 12111 2567888999999999988875
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=102.42 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=83.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...++ .++.+.+.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 45778999999999999998887643 2799999999999999999987654 357888888877654446799
Q ss_pred EEecch------hhhcCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~------~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|++.- ++.+-+ .+ ....+|+++.+.|||||+++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 998532 222111 11 124599999999999999998743
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-11 Score=101.50 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=92.6
Q ss_pred HhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
+.+.+..-+..|+.+..||......+...+...+...+.. ......|.|+|||.+.++. .-...|..+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3445554445555555555443333344444444444443 2456799999999998765 33446999997
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 189 S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
- ..+-+++.+|+.+.|.++++.|+++++.+|+.. ++..++.++.|+|+|||.++|.
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEE
Confidence 4 234567889999999999999999999988652 6788999999999999999999
Q ss_pred ecC
Q 023787 269 ENI 271 (277)
Q Consensus 269 e~~ 271 (277)
|.-
T Consensus 264 Ev~ 266 (325)
T KOG3045|consen 264 EVK 266 (325)
T ss_pred ehh
Confidence 864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=118.09 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 46799999999999999988776668999999999999999999876651 136899999976542 1136899999
Q ss_pred cchhhh-c------C--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIG-H------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~-~------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..... . . ...+...++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 864311 0 0 012567789999999999999988644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=97.50 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=92.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+....++..++. ...+.+|||||.+.|..+.+++...+ + +++.+|+++++.+.|+++++..|+ ..+
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 444556666554 34678999999999999999998766 2 899999999999999999998877 455
Q ss_pred eeEEE-cCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 214 TNFFC-VPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 214 ~~~~~-~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+..+. +|..+.- ...++||+|+.-.. ..+...++..+.++|+|||.+++ ||+--.
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~-DNvl~~ 170 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVA-DNVLFG 170 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEE-eecccC
Confidence 77777 3544332 23589999987654 34667899999999999998876 565433
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-11 Score=108.40 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 46799999999999998766666668999999999999999999876651 136889999987652 1235899
Q ss_pred EEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++......-+. ..+..++..+.++|+|||.++..-+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998855311111 1355677788999999999987543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=107.02 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=82.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++ .++++++.|+.++. ++ ++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhc-cc
Confidence 4567899999999999999888764 23799999999999999999877654 34889999988763 23 68
Q ss_pred eeEEecchh------hhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWC------IGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~------l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
||+|++... +.+-| ..+ ...++.++.++|||||.++.+.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999996532 11111 111 2468999999999999999764
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=107.47 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...++ .++.+.+.|..+++ +.+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 5577899999999999999888764 23799999999999999999887654 35788899988765 335689
Q ss_pred eEEecch------hhhcCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~------~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++.. ++..-+ .+ ...++|.++.+.|||||+++++..
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999532 222111 11 235679999999999999988743
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-11 Score=99.91 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=89.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
....++|||||-|.....+...+..+++-+|.|..|++.++..-.. .....+...|-+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999988988999999999999988764321 34577788899999999999999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+|++. ++...+.+|+..|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999988 8889999999999999998754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=102.08 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=86.0
Q ss_pred CCccEEEeeccccHH----HHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCC-----------------------CC
Q 023787 157 QHLVALDCGSGIGRI----TKNLLIRY-----FNEVDLLEPVSHFLDAARESLAP-----------------------EN 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~----s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~-----------------------~~ 204 (277)
...+|+..||+||.- +..+.+.. .-+|+|+|+|+.+++.|++-.=. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 348999999999963 33233321 11799999999999999875200 00
Q ss_pred C--CCCCCCcceeEEEcCCCCCCCC-CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecC
Q 023787 205 H--MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (277)
Q Consensus 205 ~--~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (277)
. ........+.|...|+.+.+++ .+.||+|+|.+++.|++++....+++++++.|+|||+|++. |.+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 0 0112346788999999875533 57899999999999999888999999999999999999885 444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=99.02 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C----C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----E 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~----~ 227 (277)
.++.+|||||+|+|..+..++..... +|+.+|.+++..+.|+++++..|+ ..+++++.+|+.+.. . .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence 35689999999999999988865332 699999999999999999998776 457999999876532 1 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|+.-.. ..+...++..+.++|+|||.+++ ||+
T Consensus 192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNv 229 (278)
T PLN02476 192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNV 229 (278)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecC
Confidence 368999987654 34677899999999999999776 565
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=97.80 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
...++||||+|.|..+..++ ..+.+|++.|.|+.|....+++- |.+.+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG---------------FTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC---------------CeEEehhhhhccCCceEEEee
Confidence 56789999999999999886 56778999999999988776641 122333344434468999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+++.... +...+|+.+++.|+|+|+++++=
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999877 66699999999999999999863
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=97.10 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (277)
.+.+||||||++|..+..++...+. +|+.+|+++...+.|++.+...|+ ..+++++.+|..+.- .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999976553 899999999999999999988766 568999999876531 113
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++||+|+.-.. ..+...++..+.++|+|||.+++ ||+
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~ 156 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNV 156 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETT
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-ccc
Confidence 58999997664 34677889999999999999877 443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=94.46 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=79.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+. .++.+++.|+.+.. ....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4579999999999999877767777899999999999999999877543 35888888876542 1234799999
Q ss_pred cchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~ 270 (277)
+.-.+.. . -...+++.+.. .|+|+|++++..+
T Consensus 127 ~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRK-G--LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9988532 1 23345555554 4899998888643
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=101.06 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++..|||+|||||.++...++.|+.+|++||.|. +.+.|++.+..+++ ...++++.+.+++...|..++|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEee
Confidence 5789999999999999999989988999999886 45999999988877 45788999988888766679999998
Q ss_pred chhhhcCC-hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii 267 (277)
-|.=+.+- ..-+..++-.=-+.|+|||.++=
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 87644432 22456777777899999999864
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=107.20 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
+++.+|||+|||+|..+..+++... .+++++|+++++++.++++..-..+.. ...+++++++..|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999998886544 589999999999999998432111100 011357889999987642 2346899
Q ss_pred EEecchhhhcCChh---hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~---d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++.......+.. --.++++.+++.|||||++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99998543322210 1236899999999999999885
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=104.70 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=79.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (277)
..++.+|||+|||+|.++..++... .+|+++|+|+.|++.|++++..+++ .+++|+++|+.+.. +.+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 3466799999999999999888665 5799999999999999999876543 36899999986532 33468
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|++...-.- ....+..+.+ ++|+++++++-|
T Consensus 368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999998765332 2245555555 699999999854
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=112.11 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=80.9
Q ss_pred CccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCC----------CCCCCcceeEEEcCCCCCCC
Q 023787 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~----------~~~~~~~~~~~~~d~~~~~~ 226 (277)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++|...+++. +.....+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988765 38999999999999999998765432 00112468999999876542
Q ss_pred C-CCceeEEecchhhh------cCC--------------------------hhh----HHHHHHHHHhcCCCCcEEEE
Q 023787 227 E-TGRYDVIWVQWCIG------HLT--------------------------DDD----FVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 227 ~-~~~fD~Vi~~~~l~------~~~--------------------------~~d----~~~~l~~~~r~LkpGG~lii 267 (277)
. ..+||+|+++-..- .+. .++ ...++.++.++|+|||++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 13799999874310 000 011 36678888899999999886
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=85.75 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
...+.+.+..... ...+.-|||+|.|||.+++.+++++.. .++.+|.|+.+.....+.+.+ +++
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i 98 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI 98 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence 3444444443333 567789999999999999999998765 899999999999999998766 456
Q ss_pred EEcCCCCCC-----CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 217 ~~~d~~~~~-----~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|..++. .....||.|+|.-.+-.+|.....++++.+...|.+||.++-.
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 777766654 4456899999999999998777889999999999999988864
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=92.62 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=86.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|+|.|.|+|.++..|+.. ++ .+|+.+|+-+.+.+.|++|+...++ ..++.+...|+.+...++ .||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccccccc-ccC
Confidence 678999999999999999999864 33 2899999999999999999988766 445888889998887665 899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+.-. + +.-.++..+.++|||||.+++--
T Consensus 166 av~LDm-----p--~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 166 AVFLDL-----P--DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEEEcC-----C--ChHHHHHHHHHHhCCCcEEEEEc
Confidence 998654 3 66689999999999999998853
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=92.48 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=81.2
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (277)
...+||||||.|.+...++...+. .++|+|++...+..+.++....++ .|+.++++|+..+. ++++++|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchhe
Confidence 348999999999999999999887 899999999999999888776554 78999999988742 45689999
Q ss_pred EecchhhhcCChhh------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+.++.=-+..... -..++..++++|+|||.|.+..
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 99887533322111 3579999999999999999863
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=91.22 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCC-----CC---------------C-------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN-----HM---------------A------- 207 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~-----~~---------------~------- 207 (277)
..+..+|||||..|.++..+++.+.. .|.|+||.+..+..|++++...- .. +
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999977544 89999999999999999875310 00 0
Q ss_pred --CCCCccee-------EEEcCCCCCCCCCCceeEEecchhh--hcCC--hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 208 --PDMHKATN-------FFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 208 --~~~~~~~~-------~~~~d~~~~~~~~~~fD~Vi~~~~l--~~~~--~~d~~~~l~~~~r~LkpGG~lii 267 (277)
..+..++. +...|+.+ .....||+|+|..+- -|+. |+-+..+|+++.++|.|||+|++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 00000111 11122221 234589999876543 2443 55699999999999999999987
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=6e-10 Score=90.79 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=74.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (277)
...+.+|||+|||+|..+..++.. +..+|+..|.++ .++.++.++..++. ....++.+...+..+.. .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 346789999999999999988766 456899999999 99999999877541 11345677777765521 2346
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+||+|+++.++.. ++....+++.+.++|+|+|.++++..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 8999999999986 34788999999999999999887754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.2e-10 Score=98.17 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=76.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ .+++|+++|+.++.. ..++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45799999999999999998765 4799999999999999999877554 468999999977642 235799999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+...-.-+. ..++ +....++|+++++++-+
T Consensus 246 ~dPPr~G~~----~~~~-~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELC-DYLSQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHH-HHHHHcCCCeEEEEECC
Confidence 885522221 1233 33344789999988754
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-10 Score=89.67 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+.+|+|+|||||.++...+..++.+|+++|+.+++++.++++.... ..+++|.++|+.++. +.||.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEE
Confidence 356789999999999999888888889999999999999999998762 356999999999976 6789999
Q ss_pred cchhhh
Q 023787 236 VQWCIG 241 (277)
Q Consensus 236 ~~~~l~ 241 (277)
++..+.
T Consensus 114 mNPPFG 119 (198)
T COG2263 114 MNPPFG 119 (198)
T ss_pred ECCCCc
Confidence 886553
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=92.78 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=87.3
Q ss_pred CCccEEEeeccccH----HHHHHHHhCC-----C-cEEEEeCCHHHHHHHHHHhCC---------------------CC-
Q 023787 157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP---------------------EN- 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~-----~-~v~gvD~S~~~l~~a~~~~~~---------------------~~- 204 (277)
...+|+-.||+||. ++..+.+.++ . +|+++|+|..+|+.|+.-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999995 3443444332 2 899999999999999753211 00
Q ss_pred CC-CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 205 HM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 205 ~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
.. .......+.|...|+.+-.+..+.||+|+|.+|+.|++.+....++..++..|+|||+|++- |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 00 11123567888888877663447899999999999999888999999999999999999995 6554
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=92.46 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-------C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~ 227 (277)
+..+|||||+++|..+..++...+. +|+.+|.++...+.|++++...|+ ..+++++.++..+... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHHHHHHHHhcccc
Confidence 5679999999999999988865433 899999999999999999998776 4678999998765421 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|+.-.- ......++..+.+.|+|||.+++ ||+
T Consensus 154 ~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 154 HGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred CCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 268999997644 33566888999999999999665 654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=98.97 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=75.9
Q ss_pred CccEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+..|+|+|||+|.++...++.+ ..+|++||-|+.+....+++...++. ..+++++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 5789999999999988776654 34899999999888887776555444 46799999999999876 4999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+|||-+.=.....+-....|..+.|.|||||+++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998665333333445678899999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-10 Score=101.30 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCc--EEE
Q 023787 108 EGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDL 185 (277)
Q Consensus 108 ~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~g 185 (277)
++.+-|-......-.+-++ +.........+-+.+.+.+..... ...-..+||+|||+|.++.+|+.++... +.-
T Consensus 72 K~~qnWv~~~gd~~~FPgg-gt~F~~Ga~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~ 147 (506)
T PF03141_consen 72 KADQNWVRVEGDKFRFPGG-GTMFPHGADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAP 147 (506)
T ss_pred cccccceeecCCEEEeCCC-CccccCCHHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEccc
Confidence 3445565544333222222 223323333444445555442211 3344578999999999999999886541 122
Q ss_pred EeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 186 vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
-|..+.+++.|-++--. .-+-...-..+|+++++||+|.|+.++..-...+ .-+|-++.|+|+|||++
T Consensus 148 ~d~~~~qvqfaleRGvp-----------a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 148 NDEHEAQVQFALERGVP-----------AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYF 215 (506)
T ss_pred ccCCchhhhhhhhcCcc-----------hhhhhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceE
Confidence 25555667777655211 1111233467889999999999999876544333 35899999999999999
Q ss_pred EEEec
Q 023787 266 VLKEN 270 (277)
Q Consensus 266 ii~e~ 270 (277)
+.+-.
T Consensus 216 v~S~p 220 (506)
T PF03141_consen 216 VLSGP 220 (506)
T ss_pred EecCC
Confidence 99743
|
; GO: 0008168 methyltransferase activity |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-09 Score=97.26 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=77.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (277)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++..+++ .+++|+.+|+.+. ....++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 345679999999999999988865 45799999999999999999876554 4689999998653 123457
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|++...-..+ ...+++.+.+ ++|++.++++-+
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCC
Confidence 9999976552221 1255665554 899999888743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=94.82 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|+++...++. .+++|+++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 44689999999999999888665 5799999999999999999877554 368899999876432 124699999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.-.-..+. ..+++.+. .++|+++++++-+
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 887643332 24555554 4799999999854
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=85.54 Aligned_cols=104 Identities=15% Similarity=0.024 Sum_probs=75.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD 232 (277)
.+.++||++||+|.++..++.++...|+++|.++.+++.+++++...+. ..++++++.|+.+. . . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4679999999999999999999888899999999999999999877654 23578888888543 1 1 122 478
Q ss_pred EEecchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (277)
+|+.-..+..- ....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFNG---ALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEE
Confidence 88876665431 2334444443 468888876664
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-09 Score=91.69 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=62.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEE-cCCCCCC----CCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~----~~~~ 229 (277)
...+|||||||+|.+...++.+.+. +++|+|+++.+++.|++++..+ ++ ..++.+.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5689999999999888877766443 7999999999999999999886 45 34566653 2322221 2346
Q ss_pred ceeEEecchhhhcCC
Q 023787 230 RYDVIWVQWCIGHLT 244 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~ 244 (277)
+||+|+|+-.++--.
T Consensus 189 ~fDlivcNPPf~~s~ 203 (321)
T PRK11727 189 RFDATLCNPPFHASA 203 (321)
T ss_pred ceEEEEeCCCCcCcc
Confidence 899999999877543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=86.40 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.. .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 3467899999999999999999874 4699999999999999998754 25689999999887765 48999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
+++...+.
T Consensus 96 v~NlPy~i 103 (258)
T PRK14896 96 VSNLPYQI 103 (258)
T ss_pred EEcCCccc
Confidence 99877543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=87.34 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~V 234 (277)
..+||||||.|.+...+|.+.+. .+.|||+....+..|.+++...++ .|+.+++.|+..+. +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 57999999999999999999887 899999999999999988877654 38999999887653 455699999
Q ss_pred ecchhhhcCCh------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.++.=-+... --...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 98876433211 01357999999999999999986
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=89.48 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+..|||+|||+|.++...+..+..+|.+|+.| +|.+.|++..+.+.+ ..++..+.+-++++..+ ++.|+||
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEE
Confidence 3567899999999999998888899999999986 699999999988766 67899999999998877 5899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+-..-..+-++...+..-.+++.|||.|.++-
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 86543333334444445556799999999874
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=85.70 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=79.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----CCCCCc
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPETGR 230 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 230 (277)
.+..|||+|||+|..+..++...+. .|+++|.|+.++..|.+|+...++ ...+..+..+++.. +...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence 4558999999999999999877665 899999999999999999887665 34455554444322 233589
Q ss_pred eeEEecchhhhcCC------------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLT------------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~------------------------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++|+-..-.-. -+.+..++.-+.|.|+|||.+.+.-+
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99999885421100 01245567778899999999988644
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-08 Score=84.93 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
...+.+||||.||.|+.....+...+. +|...|+|+..++..++.++..|+ ...++|.+.|+.+.. .-+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 356789999999999998888877653 899999999999999999998887 345689999877642 112
Q ss_pred CceeEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
-..++++.+..+..|++.+ +...++.+.+.+.|||+++.+
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 3679999999999999877 455799999999999999986
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=87.69 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. +|+++|+++.|++.+++++.. .+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 45678999999999999999998866 799999999999999987643 46889999999887653225888
Q ss_pred ecchhh
Q 023787 235 WVQWCI 240 (277)
Q Consensus 235 i~~~~l 240 (277)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 888664
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-09 Score=87.18 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHH-HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||||.++..+++.+..+|+++|+++.|+.. .+++..-..+. ..+++ ..+.+++..+-..||+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----RTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----cCCcc--cCCHhHcCCCceeeeEEE
Confidence 567899999999999999998877789999999988876 32221100000 01121 122222222224688777
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
++..+ .+..+.+.|+| |.+++
T Consensus 149 iS~~~----------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLIS----------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehHh----------HHHHHHHHhCc-CeEEE
Confidence 76653 46678888888 76554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-09 Score=93.34 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=88.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
.+.+|||+=|=||.++.+.+..+..+|+.||.|...++.|++|+.-+++. ..+..|+++|+.++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 47899999999999999988778878999999999999999999988763 346789999987653 2234899
Q ss_pred EEecchh-hhcCC------hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWC-IGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~-l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++-.. |.--+ ..+...++..+.++|+|||+++++-+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9995431 11111 236788999999999999999998654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=88.83 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
..+.+||.||+|.|..+..+++.. ..+++.||+++.+++.|++.+...+. ....++++++..|...+. ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 356799999999999999888753 45899999999999999999864321 111467889998887653 23468999
Q ss_pred Eecchhh--hcCChhh--HHHHHH-HHHhcCCCCcEEEEE
Q 023787 234 IWVQWCI--GHLTDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l--~~~~~~d--~~~~l~-~~~r~LkpGG~lii~ 268 (277)
|++-..- ..-+... -..+++ .+.+.|+|||++++.
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9976311 0000000 236887 899999999998764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-09 Score=88.26 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (277)
..++.+|||.|.|+|.++..|++... . +|+.+|+.+...+.|++++...++ ..++++.+.|+.+..++ +.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 67899999999999999999986533 2 899999999999999999998776 56899999998654332 36
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcC-CCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~ 268 (277)
.||.|+.-.. +.-.++..+.++| ||||++++-
T Consensus 113 ~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 113 DFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp SEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEE
Confidence 7999886543 4447899999999 899999875
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=87.60 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=78.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (277)
-.+.+|||+|||+|..+..+.... ..+++++|.|+.|++.++..+..... .....+......+ .++ ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccccC--CCCc
Confidence 356799999999998776555433 23899999999999999988765321 0111111111111 112 2349
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (277)
+|+++++|..++++....+++.+.+.+.+ .|+|+|+-++.+|
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999999999987788888888887776 9999998776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=86.11 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD-- 232 (277)
..++.+|||+|||+|.++..+++.+. .|+++|+++.|++.+++++.. ..+++++++|+.+++++ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 44678999999999999999998775 599999999999999988754 25688899999887754 466
Q ss_pred -EEecchhhh
Q 023787 233 -VIWVQWCIG 241 (277)
Q Consensus 233 -~Vi~~~~l~ 241 (277)
+|+++..++
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 777776644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=84.99 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
.+.+||-||.|.|..++.+++... .+++.||+.+.+++.+++.+........ .++++.+..|..++.- ...+||+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEE
Confidence 346999999999999999997653 4999999999999999999876532222 5788888888877642 22489999
Q ss_pred ecchhhhcCCh-h--hHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~-~--d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++-..=. ..+ + --..+++.|++.|+|+|+++..
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9655422 111 0 0247999999999999999987
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-08 Score=85.82 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..++.... +|+++|+++.|++.+++++...+. ..+++++++|+.+..++ .||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhccc--ccCEE
Confidence 45678999999999999999987654 699999999999999998865432 35789999999876543 68999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
+++...+-
T Consensus 106 vaNlPY~I 113 (294)
T PTZ00338 106 VANVPYQI 113 (294)
T ss_pred EecCCccc
Confidence 98766543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=87.54 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (277)
.+.+|||+=|=||.++.+.+..+..+|+.||.|..+++.+++++.-+++. ..+++|++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46799999999999999888777778999999999999999999887652 246889998886532 12368999
Q ss_pred Eecchh-hhc--CC-hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWC-IGH--LT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~-l~~--~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+-.. +.- +. ..+...++..+.++|+|||.+++.-+.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 995432 110 00 236778999999999999999877553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=72.85 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCccEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023787 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~V 234 (277)
++.+|||||||+|. ++..|.+.+. .|+++|+++..++.++++. ++++.+|+.+-.+. -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8887776665 5999999999999987753 56788898875533 2479999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++... +.+++..+.++++.+. .-++|.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcC--CCEEEE
Confidence 98776 4577777777777543 555554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-08 Score=78.33 Aligned_cols=111 Identities=21% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-c---------EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~---------v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
..++..+||--||+|.+....+..+.. . +.|+|+++.+++.|++++...++ ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 456789999999999998776554333 2 78999999999999999987665 45688999999999
Q ss_pred CCCCCceeEEecchhhhcC-Ch-----hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 225 TPETGRYDVIWVQWCIGHL-TD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~-~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.++++|+|+++.....- .. .-...+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 8666899999998765432 21 1145678999999999666666543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-08 Score=91.89 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=94.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++..++|+|||.|..+..+..-....++|+|.++..+..+.......++ .....+...++-+.+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence 345568999999999999988776666899999999998888777655444 345566778999989999999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.+..+..|.+ +...++++++|+++|||+++..|.+..
T Consensus 183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999 777999999999999999999876643
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.2e-08 Score=82.82 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+.+||=||.|.|..++.+++. ..+|+.||+.+.+++.+++.++.... ...+++++.+.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 457799999999999999999955 45899999999999999997764221 112456666542 211 123689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++-..+ + ..+++.+++.|+|||+++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 976431 1 36889999999999999986
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-08 Score=77.11 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+++++|+|||.|.++....-.....|.|+|+.+..++.+++|.... ..++++.++|+.+..+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 467899999999999996665455568999999999999999998764 4568999999999887779999999
Q ss_pred cchhhh
Q 023787 236 VQWCIG 241 (277)
Q Consensus 236 ~~~~l~ 241 (277)
.+..|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 887764
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.4e-08 Score=87.18 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=77.3
Q ss_pred CccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+.+|||++||+|..+..++.... .+|+++|+++.+++.+++++..+++ .++.+.+.|+..+.....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999876543 4799999999999999999877654 2456788887654321357999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.-. . ....++..+.+.+++||+++++
T Consensus 132 DP~----G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF----G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC----C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 642 2 2236888877889999999998
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=90.12 Aligned_cols=107 Identities=16% Similarity=0.040 Sum_probs=83.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
.....+||||||.|.++..++...+. .+.|+|++...+..+.++....++ .|+.+++.|+..+. ++++++|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 45678999999999999999999887 899999999988888777655443 56777777764332 5678999
Q ss_pred EEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.++.=-+.... --..+++.+++.|||||.+.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 99988764332111 1357999999999999999886
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=85.80 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC---------
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~--------- 227 (277)
.+|||++||+|.++..+++. ..+|+++|+|+.+++.|++++..+++ .++.|+.+|+.++. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 57999999999999977654 56799999999999999999877654 36889999886631 10
Q ss_pred -----CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
..+||+|+..-.-.-+. ..+++.+.+ |+++++++-+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeC
Confidence 12589999876632222 245555543 7888888744
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.7e-08 Score=80.86 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
.+.++||+-||+|.++...+.+++.+|+.||.++..+...+++++..+. ..+...+..|....- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 5789999999999999999999999999999999999999999887554 335777777753321 1347999
Q ss_pred EEecchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (277)
+|++-.....-. ....++..+. .+|+++|.+++-
T Consensus 117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 999887755421 1356777776 789999988774
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=81.70 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=84.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~ 233 (277)
..++..|||==||||.+.....-.+. +++|+|++..|++-|+.|+...+. ....+... |+..+++++.+||.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 56788999999999999987664455 599999999999999999987543 22333444 99999988778999
Q ss_pred EecchhhhcCC-------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++-....--+ ++=...+|+.+.++||+||+++|.-+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99654322111 22367899999999999999999754
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-08 Score=83.30 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCC-cee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-~fD 232 (277)
+++.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ...++++++..|...+. -... +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999888544 348999999999999999987542110 11467888998876553 1223 899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+.-..-...+... -..+++.+++.|+|||++++.-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643321111111 2479999999999999999864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-07 Score=79.62 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=82.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 226 (277)
.++..++|+|||.|.=+..|++.. ...++.+|+|..+++.+.+++....+ ....+.-+++|+.+. +.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhccc
Confidence 356689999999999888777653 22699999999999999999872211 012334467777553 11
Q ss_pred --CCCceeEEecc-hhhhcCChhhHHHHHHHHHh-cCCCCcEEEEE-ecC
Q 023787 227 --ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK-ENI 271 (277)
Q Consensus 227 --~~~~fD~Vi~~-~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~-e~~ 271 (277)
......+|+.- .++.++++++...+|+++++ .|+|||.|++. |.+
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 12345666655 48999999999999999999 99999999986 544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=85.00 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=70.9
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-----------
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 227 (277)
.+|||++||+|.++..+++. +.+|+++|+|+.+++.|++++..+++ .++.|+..|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999977655 45799999999999999999877654 3688999888664210
Q ss_pred -----CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...||+|+..-.=.-+ ...+++.+.+ |+++++++-+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEEcC
Confidence 1137999876652211 2245555543 7888888744
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=67.44 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=71.8
Q ss_pred EEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC--CCCCC-CceeEEe
Q 023787 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVIW 235 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~fD~Vi 235 (277)
++|+|||+|..+ .+..... ..++++|+++.++..++...... . ...+.+...+... +++.. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-G-----LGLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-C-----CCceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999976 3333322 26899999999999965544221 0 0115677777665 56665 4899994
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+....++.. ....+.++.+.|+|+|.+++.+...
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444444444 5689999999999999999987654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-07 Score=78.61 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=82.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC---CC--------------------C-------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---EN--------------------H------- 205 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~---~~--------------------~------- 205 (277)
..+.+||-=|||.|+++..++..++. +.|.|.|--|+-..+-.+.. .+ +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45679999999999999999999885 99999999997765543321 00 0
Q ss_pred ----CCCCCCcceeEEEcCCCCCCCCC---CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 206 ----MAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 206 ----~~~~~~~~~~~~~~d~~~~~~~~---~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.......+.....+|+.++-.++ ++||+|+.++.+...+ ++...|..+.++|||||+.+-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEe
Confidence 00011235666667777765444 7999999998887655 899999999999999997764
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=71.94 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=87.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
..|+..+++. -.++++||||.=||..+..++...+. +|+++|+++...+.+.+..+..+. ...+++
T Consensus 62 g~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 3455555542 25689999999999999988877665 899999999999999888777665 578999
Q ss_pred EEcCCCCCC------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 217 FCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 217 ~~~d~~~~~------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++++..+.. .+.++||+++.-.- ..+....+.++.+++|+||++++ ||
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DN 183 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DN 183 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-ec
Confidence 998765431 34579999985322 23455789999999999999877 45
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=73.42 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=75.0
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+++|||+|.|.-+..++-..+. +++.+|.+..=+...+.-....++ .++++++..+++ .....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 7999999999988888777776 899999999877766665555444 568889988887 33457999999988
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+- .+..++.-+...+++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 74 4558899999999999998875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-07 Score=73.91 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=77.5
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCC--cEEEEeCCHHHHHHHHHHhCCCCC----CCCCCCcceeEEEcCCCCCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~--~v~gvD~S~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~ 228 (277)
.++.+.||+|+|+|.++..++.. +.. ...|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 47899999999999999877643 222 349999999999999999864210 00011245778888888877777
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+||.|++...-. ..-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8999999874422 4556777789999999874
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=77.19 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++..|+|+-||.|.++..+++. ....|+++|++|..++.+++++..+++ ..++..+++|..++.. .+.||.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 46789999999999999998873 334799999999999999999988766 4568889999988765 5799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++...-. -..++..+.+++++||++-
T Consensus 174 im~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred EECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 9876522 1258888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-07 Score=77.91 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=83.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
...+.+|||...|-|..+...++++...|.-++.++..++.|.-|-=..++ ....++.+.+|..+.. +++.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 557899999999999999999999998899999999999988755322222 1335788888887663 7788999
Q ss_pred EEecchh-hhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~-l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+--.. |.+...---..+.++++|+|||||.++--
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 9984321 22222112347999999999999999864
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=81.28 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=82.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.++.+|||++||.|.=|.+++..... .|+++|+++.-++.+++++...|+ .++.....|...+. ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 467889999999999999999876533 799999999999999999987664 45677777776653 223679
Q ss_pred eEEe----cch--hhhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIW----VQW--CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi----~~~--~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
|.|+ |+. ++..-+ .++ ...+|..+.+.|||||+|+.+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9999 443 232211 111 2678999999999999998763
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=80.56 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+..++|+|||.|..+. ..+ ..+.|.|++...+..+++.-. .....+|+..+++.+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccch
Confidence 47889999999997654 122 259999999988888765421 1456789999999989999999
Q ss_pred cchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++||+. ......+++++.|.|+|||...+.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999996 445678999999999999986664
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=70.16 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=75.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+.-+||||||+|..+..+++.... .+.++|++|.+++..++....++ .+++.++.|+..-..+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 567999999999999988766433 68899999999999887776542 3467778887664333 7899988
Q ss_pred cchhhhcC-------------------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHL-------------------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~-------------------~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+-..--- ..+-...++..+-.+|.|.|++++.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 66432111 1112456778888899999999986
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=78.41 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=92.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..+.+|||.=||.|.++..++..+...|+++|++|..++.+++++..++. ...+..+++|..+....-+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35889999999999999999988776799999999999999999998776 3448889999998876657899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
+...- .-..++..+.+.+++||++-+-+++.++.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 88763 22368888888999999999998887643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-06 Score=69.55 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C-CCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~fD 232 (277)
-.+.++||+=+|+|.++...+.++...++.||.+...+...+++....++ ..+..++..|...+. . ..++||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence 36789999999999999999999999999999999999999999877554 356677777776441 1 223599
Q ss_pred EEecchhhhc-CChhhHHHHHHH--HHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGH-LTDDDFVSFFKR--AKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~-~~~~d~~~~l~~--~~r~LkpGG~lii~e 269 (277)
+|+.-..++. +. +....+.. -...|+|+|.+++-.
T Consensus 117 lVflDPPy~~~l~--~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAKGLL--DKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCccchh--hHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 9999888762 11 11223333 457799999999853
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-07 Score=76.50 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC-------------CCCC---------CCcc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAPD---------MHKA 213 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-------------~~~~---------~~~~ 213 (277)
.++.++||||||+-..-..-+...+.+|+..|+++..++..++-+...+- .+.. ....
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35679999999996554433445667999999999999988877655321 0000 0111
Q ss_pred e-eEEEcCCCCCC-CCC-----CceeEEecchhhhcCC--hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 214 T-NFFCVPLQDFT-PET-----GRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 214 ~-~~~~~d~~~~~-~~~-----~~fD~Vi~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+ ..+.+|+.+.+ ..+ .+||+|++.+++.... .+....+++++.++|||||.|++..-..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 2 25567887654 221 3599999999998764 4568899999999999999999986544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=78.46 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred CccEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
+.+|||+.||+|..+..++.+ +..+|+++|+++..++.++++++.++. .++.+++.|+..+.. ...+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 368999999999999999987 557899999999999999999977543 346778888766532 12579999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..-. + ..+ ..++..+.+.+++||+++++
T Consensus 119 dlDP-f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 8855 3 222 26899999999999999998
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=72.94 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~ 233 (277)
..++..|||||+|.|.+|..|+++... |+++|+++.+++..++++.. ..+++.+.+|+....++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 455789999999999999999988775 99999999999999999864 4679999999998887632 5788
Q ss_pred Eecchhh
Q 023787 234 IWVQWCI 240 (277)
Q Consensus 234 Vi~~~~l 240 (277)
|+++...
T Consensus 99 vVaNlPY 105 (259)
T COG0030 99 VVANLPY 105 (259)
T ss_pred EEEcCCC
Confidence 8877654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=76.80 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCC-
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG- 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~- 229 (277)
+.++..++|++||.|..+..+++... .+|+|+|.++.|++.|++++.. ..++.+++.++.++. .+.+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45677999999999999999998864 3899999999999999988754 246888999888764 2212
Q ss_pred -ceeEEecch
Q 023787 230 -RYDVIWVQW 238 (277)
Q Consensus 230 -~fD~Vi~~~ 238 (277)
+||.|++..
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 799998543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=69.39 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=82.6
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
..+.|+|+|+|.++. ++.+...+|++++.+|.-.+.|.+++.-.|+ .+++.+.+|+.++.++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCC------cceEEEeccccccccc--ccceeHHHH
Confidence 679999999999998 5556677999999999999999999765553 6899999999998884 589999866
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.=.-+-.+....+++.+...||-++.++-.+
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 4333334456778999999999999887543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-06 Score=71.18 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++..|||+|.|||.+|..+++.+.. |+++++.+.|+....++...... ......+.+|+...+.+ .||.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--cccee
Confidence 678899999999999999999988775 99999999999999999887543 35678888998877654 69999
Q ss_pred ecch
Q 023787 235 WVQW 238 (277)
Q Consensus 235 i~~~ 238 (277)
|++.
T Consensus 128 VsNl 131 (315)
T KOG0820|consen 128 VSNL 131 (315)
T ss_pred eccC
Confidence 9754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-07 Score=74.26 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=73.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
...+.++||+|+|.|..+..++ ..+.+|.+.+.|..|....+++- |-+....++...+-+||+|
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~---------------ynVl~~~ew~~t~~k~dli 173 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN---------------YNVLTEIEWLQTDVKLDLI 173 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC---------------CceeeehhhhhcCceeehH
Confidence 4567899999999999999765 56668999999999999887642 1112222222223579999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCC-CcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG~lii~ 268 (277)
.|.+.+.-.. +.-.+++.++.+|+| +|.++++
T Consensus 174 ~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 174 LCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 9999987665 555899999999999 9988875
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=73.31 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=69.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHh--------CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~--------~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 225 (277)
..++.+|+|-.||+|.+...+.+. ....++|+|+++.++..|+-++.-.+.. .....+...|....+
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 556778999999999998877763 2338999999999999998765332211 122346666654433
Q ss_pred CC-CCceeEEecchhhhcC--Ch-----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PE-TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~-~~~fD~Vi~~~~l~~~--~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. ...||+|+++..+... .. ..-..++..+.+.|++||++.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 22 4689999988655432 00 01124889999999999987664
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=67.41 Aligned_cols=97 Identities=25% Similarity=0.268 Sum_probs=74.1
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+.+++|||+|.|.-+..++-..+. +|+.+|....=+...+.-....++ .|+.+++.-++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999998887745444 799999988766666555555443 6789999999987643211999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..+- .+..++.-+...+|+||.++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcch
Confidence 8763 55578888889999988864
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.7e-06 Score=75.32 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (277)
..++.++||+=||.|.++..++ ....+|+|+|+++++++.|+++++.++. .|+.|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 4566899999999999999888 4455799999999999999999998876 4589999999887533 2478
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|.|+..-.=.-+. . .+++.+. .++|-.+++++-|-
T Consensus 364 d~VvvDPPR~G~~--~--~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 364 DVVVVDPPRAGAD--R--EVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CEEEECCCCCCCC--H--HHHHHHH-hcCCCcEEEEeCCH
Confidence 9999765543333 1 3444444 46788888888653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=74.14 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=88.0
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
.++|-+|||.-.++..+.+.++..|+.+|+|+..++....+.... .....+...|+..+.+++.+||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 489999999999999999889999999999999999887765321 3568889999999999999999999998
Q ss_pred hhhcCChh--------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 239 CIGHLTDD--------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 239 ~l~~~~~~--------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.++++-.. .....+.++.|+|+|||+++..-.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88876311 134568999999999999877644
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=69.19 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeecccc--HHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG--~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~ 210 (277)
....+.|+.+.+..+..+ ..-...||||||-= ..+-.+++.. +. +|+.||..|..+..++..+..+
T Consensus 49 ar~nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------- 118 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------- 118 (267)
T ss_dssp HHHHHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------
Confidence 455567777766544331 13357999999932 3344455443 33 8999999999999999998873
Q ss_pred Ccc--eeEEEcCCCCCC--CC----CCcee-----EEecchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 211 HKA--TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 211 ~~~--~~~~~~d~~~~~--~~----~~~fD-----~Vi~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+ ..++.+|+.+.. +. .+-+| .|++..++||+++ ++...+++.+...|.||.+|+|+-.+
T Consensus 119 -~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 119 -PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred -CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 34 789999987642 00 12233 5778889999986 67999999999999999999998544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.14 E-value=7e-07 Score=73.12 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=57.5
Q ss_pred CCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC------C--C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~--~ 226 (277)
.+.+|||+||++|.++..++.+. ..+|+++|+.+. . . ...+.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~---~--------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D---P--------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G---S---------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c---c--------ccceeeeecccchhhHHHhhhhhc
Confidence 56899999999999999888777 348999999865 0 0 11233333332211 1 1
Q ss_pred --CCCceeEEecchhhhcCCh---------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 --~~~~fD~Vi~~~~l~~~~~---------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+||+|+|-.+...... .-....+.-+...|+|||.+++.-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1258999998773322211 123445566667899999988863
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-06 Score=68.70 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=52.8
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc-eeEEec
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR-YDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~Vi~ 236 (277)
.|+|+.||.|..+..+++. +.+|+++|+++..++.|+.++.-.|. ..+++|+++|..+.. ..... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6899999999999999865 55799999999999999999887654 568999999987653 11112 899995
Q ss_pred c
Q 023787 237 Q 237 (277)
Q Consensus 237 ~ 237 (277)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=65.70 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCC-------CCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
..++...+|||||.|......+.. .+.+.+|||+.+...+.|+..... .+. ....+++..+|+.+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~----~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK----RPGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc----ccccceeeccCccccHh
Confidence 567889999999999987766543 455799999999988877653321 111 12467778888776431
Q ss_pred C---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 227 ~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
. -...|+|++++.. ++ +++...|.+....||+|-+++-.....+
T Consensus 116 ~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCP 162 (205)
T ss_dssp HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred HhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence 1 0246999998764 22 4666777888899999988876555544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=76.28 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 224 (277)
...+|||.|||+|.+...++.... ..++|+|+++..+..++.++...+. ...+..+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999988876542 2689999999999999998765431 1122233322111
Q ss_pred --CCCCCceeEEecchhhh
Q 023787 225 --TPETGRYDVIWVQWCIG 241 (277)
Q Consensus 225 --~~~~~~fD~Vi~~~~l~ 241 (277)
....+.||+|+++-...
T Consensus 105 ~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccCcccEEEeCCCcc
Confidence 11125899999886544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=65.84 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (277)
...++|||||=+......- ...+ .|+.||+++ ..-.+.+.|+-+.|. +.++||+
T Consensus 51 ~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCceeeccccCCCCCCcccceeE
Confidence 3479999999755433311 1234 599999974 112235566665543 3579999
Q ss_pred EecchhhhcCC-hhhHHHHHHHHHhcCCCCcE-----EEEE
Q 023787 234 IWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGF-----FVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~-----lii~ 268 (277)
|.++.||.++| +.+.-.+++++.+.|+|+|. ++++
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 99999999999 45577899999999999999 7776
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=77.17 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=78.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHHH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF 192 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~~ 192 (277)
.++..++|-+||+|.+....+... ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356799999999999987765420 0158999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEecchhhhc-CC-hhhHHHHHHHHHhcCC---CCcEE
Q 023787 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLK---PGGFF 265 (277)
Q Consensus 193 l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Vi~~~~l~~-~~-~~d~~~~l~~~~r~Lk---pGG~l 265 (277)
++.|++++...++ ...+.+.++|+.+++.+ .++||+|+++..... +. ..++..+...+.+.++ +|+.+
T Consensus 269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9999999988766 45688999999887643 357999999976432 22 2344455555444444 88887
Q ss_pred EEE
Q 023787 266 VLK 268 (277)
Q Consensus 266 ii~ 268 (277)
++.
T Consensus 344 ~ll 346 (702)
T PRK11783 344 ALF 346 (702)
T ss_pred EEE
Confidence 664
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.7e-05 Score=66.84 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=74.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC---Cce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~f 231 (277)
..++..|||+|+|+|.+|..+++.+ .+++++|+++.+.+..++++.. ..+++++..|+.++.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4477899999999999999999887 6799999999999999998874 467999999999887543 456
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCC---CcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~ 268 (277)
..|+++... +++. .++.++...-+. ...+++.
T Consensus 99 ~~vv~NlPy-~is~----~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 99 LLVVGNLPY-NISS----PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEEEEETG-TGHH----HHHHHHHHHGGGCEEEEEEEEE
T ss_pred eEEEEEecc-cchH----HHHHHHhhcccccccceEEEEe
Confidence 778877665 4442 455555442232 3455554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=63.89 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=76.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+++|||+|+|+|..+...+..+...|+..|+.|......+-|.+.++ ..+.+...|... ++..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-------v~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-------VSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-------ceeEEeeccccC---CCcceeEEE
Confidence 4678999999999999998888888899999999888888777776653 457777777765 346899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCc-EEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii~e~ 270 (277)
...++..-+ .-..++. +.+.|+..| .+++-++
T Consensus 148 agDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 148 AGDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred eeceecCch--HHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 999876544 3446666 555555555 4444443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5e-05 Score=62.73 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
.++.+||++|-|-|.....+-++-+.+-+.++..|..++..+...-.. ..++....+-.++.. .+++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 578999999999999988777666778899999999999998865432 245656665444432 45678999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+---.-.+- +|+..+.+.+.|+|||+|++-+-
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 9854332332 47888999999999999998775
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6e-06 Score=68.26 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD 232 (277)
....|+|.-||.|..+..++.+++. |+++|++|.-+..|+.+++--|. ..+++|+++|+.++ .+....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 4568999999999999999988775 99999999999999999987666 56899999998764 24444577
Q ss_pred EEecch
Q 023787 233 VIWVQW 238 (277)
Q Consensus 233 ~Vi~~~ 238 (277)
+|+.+.
T Consensus 168 ~vf~sp 173 (263)
T KOG2730|consen 168 CVFLSP 173 (263)
T ss_pred eeecCC
Confidence 887553
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.3e-05 Score=58.40 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCCCccEEEeeccccHHHHHHHH-----hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (277)
..+..+|+|+|||.|.++..++. ....+|+++|.++..++.+.++....+. ....+..+...+..+... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence 35678999999999999998887 4333899999999999999888765331 112345556665544322 35
Q ss_pred ceeEEecchhhhcCC
Q 023787 230 RYDVIWVQWCIGHLT 244 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~ 244 (277)
..++++.-.+-..++
T Consensus 99 ~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 99 PPDILVGLHACGDLS 113 (141)
T ss_pred CCeEEEEeecccchH
Confidence 677777665554444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-05 Score=69.33 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=53.0
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------------
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------------- 225 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 225 (277)
+|||+-||.|.++..++ ..+.+|+|||+++.+++.|++++..+++ .+++|+.++.+++.
T Consensus 199 ~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence 79999999999999877 5556799999999999999999988765 57888887655432
Q ss_pred --CCCCceeEEecchhhhcCC
Q 023787 226 --PETGRYDVIWVQWCIGHLT 244 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l~~~~ 244 (277)
.....+|+|+.-..=..+.
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp S-GGCTTESEEEE---TT-SC
T ss_pred hhhhhcCCCEEEEcCCCCCch
Confidence 1123689988655433333
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.4e-05 Score=59.70 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=45.5
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
.++|+|||+|..+..++..++. +++++|+++.+.+.+++++..+++ .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999998877765 799999999999999999876543 23555555444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2e-05 Score=62.21 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=80.6
Q ss_pred cccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023787 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMA 207 (277)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~ 207 (277)
.....+..+++.+...+..... .-.+.+||++|.|--.++-.+..... . .|...|-++..++-.++....+....
T Consensus 5 tgnvciwpseeala~~~l~~~n---~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPN---KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS 81 (201)
T ss_pred CCcEEecccHHHHHHHHHhchh---HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence 3344556666666665543221 33457999999995444443433332 2 89999999999998887765432111
Q ss_pred CCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 208 PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 208 ~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...-..+++..-... ...+...||.|+++.++.. ++-...+++.+.++|+|.|.-++.-
T Consensus 82 ~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cceehhhHHHHhhhH-HHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 110000111000000 0123458999999998754 4456789999999999999866653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.3e-05 Score=62.44 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=54.1
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEEecch
Q 023787 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~Vi~~~ 238 (277)
|+||||-.|.+..+|++.+.. +++++|+++.-++.|++++...++ ..++++..+|- ..++.. ...|.|+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999988775 799999999999999999988776 56789999884 434322 2379998665
Q ss_pred h
Q 023787 239 C 239 (277)
Q Consensus 239 ~ 239 (277)
+
T Consensus 75 M 75 (205)
T PF04816_consen 75 M 75 (205)
T ss_dssp E
T ss_pred C
Confidence 4
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=63.73 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=83.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC----------------------------------------cEEEEeCCHHHHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD 194 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~----------------------------------------~v~gvD~S~~~l~ 194 (277)
-.++..++|-=||+|.+....+-...+ .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 344568999999999998877655421 2779999999999
Q ss_pred HHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhh-cCChh-h----HHHHHHHHHhcCCCCcEEEEE
Q 023787 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDD-D----FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~-~~~~~-d----~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.|....|+ ...+.|.+.|+.++..+-..+|+|||+.... -+..+ . ...+.+.+++.++--+.++|+
T Consensus 269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999998877 5779999999999875546899999997532 12211 1 334566777888877888876
Q ss_pred e
Q 023787 269 E 269 (277)
Q Consensus 269 e 269 (277)
-
T Consensus 344 t 344 (381)
T COG0116 344 T 344 (381)
T ss_pred c
Confidence 3
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=64.68 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCC-CCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.-.+||-+|.|.|...+.++ +++ .+++.||+.|.|++.++.+..-... .+...++++..+..|..++. -....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 345689999999999999988 444 4999999999999999844321111 01122568888888887763 223589
Q ss_pred eEEecch------hhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQW------CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~------~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+||.-. ++.-+- -.++..-+.+.|+++|.+++.-.
T Consensus 367 D~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecC
Confidence 9998432 222221 23688889999999999999743
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=64.03 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
+.++.+|||+.++.|.=|.+++..... .|+++|.|+.=++..++++...|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 678899999999999999989877653 469999999999999999988765 44666777765543 222
Q ss_pred CceeEEec------chhhhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWV------QWCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~------~~~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||.|+. .++++--| ..+ ..++|..+.+.|||||.|+.+.
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 36999982 23332111 111 4568999999999999999873
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.8e-05 Score=65.95 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.++|||||++|.++..+++++. +|++||.++ |-. .+.. ..++.....|...+.++.+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35788999999999999999998887 699999653 222 2222 356777777766665435789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
+|-.+- ....+.+-+.+.|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 987663 2335555555555444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=60.43 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+|+|+||-.|.++..+++.... .|+++|+-|-- ...++.++++|+++-.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHHH
Confidence 457899999999999999977776554 49999986411 1356889999988754
Q ss_pred -CCCCceeEEecchhh--------hcCChhh-HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l--------~~~~~~d-~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.....+|+|+|-..- +|..... ...++.-+..+|+|||.+++..--
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 233457999955432 3332222 334566677899999999987543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.2e-05 Score=63.27 Aligned_cols=98 Identities=24% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD 232 (277)
..++..+||+|+.||.+|..+++++...|+++|..-.++.+--++- ...+.+...++..+..+ .+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCC
Confidence 3467899999999999999999999999999999987777543331 12233344455544311 13678
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+|+|--+|. .+..+|..+..+++|+|-++.
T Consensus 147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 999887765 345899999999999997765
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.4e-05 Score=64.92 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCccEEEeeccccHHHHHHHHh--CCC-cEEEEeCCHHHHHHHHHHhC-CCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~-~v~gvD~S~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.+.+|+=||||.=-+|..++.. +.. .|+++|+++..++.+++-.. ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 4569999999987776666543 222 69999999999999998776 3333 4678999999876654446899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.+.... ++.++-.++|.++.+.++||..+++.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 998766543 33346678999999999999999886
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=58.44 Aligned_cols=104 Identities=14% Similarity=0.003 Sum_probs=69.0
Q ss_pred cCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023787 153 ARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (277)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (277)
....++.+||-+|+.+|....++..--. . .|++|+.|+...+..-...+. ..|+--+..|+..-. .-
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y~~l 140 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKYRML 140 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGGTTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHhhcc
Confidence 3467889999999999999998876533 2 799999999655444333322 356666677776421 22
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+.+|+|++--+- +++..-++.++...||+||.++++
T Consensus 141 v~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 141 VEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp S--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 3589999876551 235667889999999999999876
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.6e-05 Score=62.28 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=46.5
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.+-......|.+++.|+|++..++.|++-++...++++|+|.|||||++-++
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 3444444445567789999999999999999889999999999999999999886
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.2e-05 Score=66.90 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=72.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+|||+|.|.|.....+..-.+. .++.++.|+..-+..-.......... ...+..-+..|-..++.. ..|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~--td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK--TDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc--CCCCCCccchhccCCCcc-ceeehh
Confidence 4567999999999877655443443 78889999876665544332211100 011111122233333333 478887
Q ss_pred ecchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 023787 235 WVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276 (277)
Q Consensus 235 i~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (277)
+...-+-+.. ...+...++.+..++.|||.|+|.|.-++.+|
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 7766555543 33356689999999999999999998776654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.7e-05 Score=58.97 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 023787 162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi 235 (277)
||||+..|..+..+++... .+++++|..+. .+..++..+..++ ..++.++.++..+.- ++.++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6899999999988775422 16999999985 2222233222222 356889998876542 2246899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.-.. |- .+.....+..+...|+|||++++-|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7653 11 1245578899999999999998865
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=59.23 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHH----------HHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~----------~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
..++.+|+|+=-|.|.++..+.... +. .|+++=+.+. +-..+++.. ..|.+.+..++.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~~ 115 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPLV 115 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCccc
Confidence 5688999999999999999665432 22 5666543322 111121111 233444445555
Q ss_pred CCCCCCCceeEEecchhhhcC-----ChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 223 DFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 223 ~~~~~~~~fD~Vi~~~~l~~~-----~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
.+. .++..|+++.+..-|-+ .......+.+.+++.|||||++.+.|+....
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 554 33567777764433322 2334678999999999999999999997543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00084 Score=57.51 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~ 230 (277)
..++.+|||-|.|+|.++.++++.... ++.-+|+...-.+.|++.++..+. ..++++..-|+....+. ...
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678999999999999999999876543 899999999999999999988775 67899999888876543 467
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~ 264 (277)
+|.|+.-.. ..-.++-.++.+||.+|.
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGG 204 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCc
Confidence 888875433 223566666667887663
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.8e-05 Score=68.32 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (277)
+.+-..+.+... .+.+..++|+-||||.++..++ ++..+|+||++++..++.|+.+...++. .|.+|+++
T Consensus 369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence 334444554444 5677899999999999999776 6666899999999999999999998876 68899998
Q ss_pred CCCCC
Q 023787 220 PLQDF 224 (277)
Q Consensus 220 d~~~~ 224 (277)
-.++.
T Consensus 439 qaE~~ 443 (534)
T KOG2187|consen 439 QAEDL 443 (534)
T ss_pred chhhc
Confidence 55443
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00067 Score=59.60 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=48.1
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcC----CCC-CCCCCCc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVP----LQD-FTPETGR 230 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d----~~~-~~~~~~~ 230 (277)
..++||||||....-..|..+.+. +++|+|+++..++.|++++..+ ++ ..++..+... +.. +..+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 578999999988665445444333 7999999999999999999887 55 4567766542 211 2223468
Q ss_pred eeEEecchhhhcCC
Q 023787 231 YDVIWVQWCIGHLT 244 (277)
Q Consensus 231 fD~Vi~~~~l~~~~ 244 (277)
||+.+|+..|+.-.
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999987654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=67.00 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=65.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..-..|+|..+|.|.++..|.+.. |+....-|. .+... -+.|+ +-.++.=-+.++.-+.+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vI----ydRGL--------IG~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVI----YDRGL--------IGVYHDWCEAFSTYPRTY 428 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhh----hhccc--------chhccchhhccCCCCcch
Confidence 344689999999999999886442 444443332 11111 11122 111211123333334899
Q ss_pred eEEecchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|.+..+|.... .-++..++-++.|+|+|||.++|.|.+
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9999999887654 335788999999999999999998864
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00044 Score=60.79 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=79.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
+.++.+|||+.++.|.=+..++.... ..+++.|+++.-+...++++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 56788999999999999998888765 3899999999999999988877654 45666656655541 12236
Q ss_pred eeEEec----ch--hhhcCCh-------hh-------HHHHHHHHHhcC----CCCcEEEEEe
Q 023787 231 YDVIWV----QW--CIGHLTD-------DD-------FVSFFKRAKVGL----KPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~----~~--~l~~~~~-------~d-------~~~~l~~~~r~L----kpGG~lii~e 269 (277)
||.|+. +. ++..-++ .+ ...+|+++.+.+ ||||+++.+.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999982 22 2332221 11 356899999999 9999999873
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00088 Score=58.49 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC---C--------------------CCCCCCCC--
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA---P--------------------ENHMAPDM-- 210 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~---~--------------------~~~~~~~~-- 210 (277)
....+||-=|||.|+++..++..++. +-|=++|--|+=...-.+. . +.+....+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45679999999999999999988886 7777888887655433221 0 00000000
Q ss_pred -------CcceeE--EEcCCCCCCC---CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 211 -------HKATNF--FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 211 -------~~~~~~--~~~d~~~~~~---~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.....| -.+|+.+.-. ..++||+|+.++.+.... +...+++.+..+|||||+.+-.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000111 2234433211 124799999998776544 7889999999999999998753
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00049 Score=53.57 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEecchhhhcCCh---------hhHHH
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTD---------DDFVS 250 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~---------~d~~~ 250 (277)
+|+++|+-+.+++..++++...+. ..+++++..+=+++. .+.+++|+|+.+.. |+|- +.-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 589999999999999999988665 357888887655543 12258999997754 4432 23567
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 023787 251 FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 251 ~l~~~~r~LkpGG~lii~ 268 (277)
+++.+.++|+|||.+.+.
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 889999999999999986
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0062 Score=50.13 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=78.1
Q ss_pred HHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC
Q 023787 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (277)
Q Consensus 142 l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d 220 (277)
|...+...+......++.+||=+|+.+|....++..--.. .+++|++|+.+....-..+.. ..|+--+..|
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~D 132 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILED 132 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecc
Confidence 3333433444445788999999999999999888755333 799999999987766655554 3455556667
Q ss_pred CCCCC---CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 221 LQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 221 ~~~~~---~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..-. .--+..|+|+.--+ .+++..-+..++...||+||.++++
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 65421 11246888875433 1234556788999999999976664
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0064 Score=50.71 Aligned_cols=78 Identities=17% Similarity=-0.009 Sum_probs=62.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.++.||||-.|.+..++...+.. .+++.|+++.-++.|.+++...++ ..+++...+|...--..+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence 3456999999999999999988765 899999999999999999998777 5677777777633222334799998
Q ss_pred cchh
Q 023787 236 VQWC 239 (277)
Q Consensus 236 ~~~~ 239 (277)
.+++
T Consensus 91 IAGM 94 (226)
T COG2384 91 IAGM 94 (226)
T ss_pred EeCC
Confidence 6654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=54.95 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=67.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CCCCCCc-ee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGR-YD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~-fD 232 (277)
...+||++|+|+|..+..++.....+|...|+...+ +..+.+...++.........+.....+..+ ..+-... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456799999999988886665566678888875443 333333222111100101123333333222 2211123 99
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++.++.+-. ....++..++..|..+|++++.-.
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999987654 566888889999999997766543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=57.69 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
..++..++|.-||.|..+..++.... .+|+|+|.++.+++.+++++... ..++.++++++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45677999999999999999997753 48999999999999999987642 246888888877653 123
Q ss_pred CceeEEecc
Q 023787 229 GRYDVIWVQ 237 (277)
Q Consensus 229 ~~fD~Vi~~ 237 (277)
.++|.|+..
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 568888843
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0059 Score=53.42 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=67.6
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEecc
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Vi~~ 237 (277)
+++|+-||.|.++..+...++..+.++|+++..++..+.++... .++.|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999888888888999999999999999887541 345566665422 2579999965
Q ss_pred hhhhcCCh--------hhHHHHH---HHHHhcCCCCcEEEEEecCCC
Q 023787 238 WCIGHLTD--------DDFVSFF---KRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 238 ~~l~~~~~--------~d~~~~l---~~~~r~LkpGG~lii~e~~~~ 273 (277)
.....++. +....++ -++.+.++|. +++.||+..
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g 114 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG 114 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc
Confidence 43322210 1111222 2344445665 778899854
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=59.77 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=66.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~ 236 (277)
...|||||.|||.++....+.+...|++++.=..|.+.|++....+|. ..+++.+..--++.... ..+-|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence 357899999999999977777888999999999999999999988877 35566655433333211 134666665
Q ss_pred chhhhcCChhhHHHHHHHHHhcC-CCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGL-KPG 262 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~L-kpG 262 (277)
....-.+.-+.....++++++.| +||
T Consensus 142 e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhcccC
Confidence 44433332222334455555554 444
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0016 Score=53.50 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCC-CCCCCcceeEEEcCCCCCC---CCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT---PETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~---~~~~~f 231 (277)
+.-.+.|||||.|.+...|+..++. -+.|.+|--..-++.++++...+.. ......++.....+...+. +..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467999999999999999877776 7899999888888888876543211 1111344555544433332 122222
Q ss_pred eEEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+-.+..+.--|+... --..++.+..-+|++||.++....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 222221111121100 023577888889999999987643
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0019 Score=55.05 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+.....++..++.. ...+.+|+|||||.=-++..+...... .++++|++..+++.....+... ...
T Consensus 89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~ 155 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVP 155 (251)
T ss_dssp GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-C
T ss_pred hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCC
Confidence 44455555555431 345789999999999998877744332 8999999999999998876553 245
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhh
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d 247 (277)
.++...|+..-+.+ ...|+....-+++.+....
T Consensus 156 ~~~~v~Dl~~~~~~-~~~DlaLllK~lp~le~q~ 188 (251)
T PF07091_consen 156 HDARVRDLLSDPPK-EPADLALLLKTLPCLERQR 188 (251)
T ss_dssp EEEEEE-TTTSHTT-SEESEEEEET-HHHHHHHS
T ss_pred cceeEeeeeccCCC-CCcchhhHHHHHHHHHHHh
Confidence 66777777765443 5899999888877765333
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0063 Score=49.47 Aligned_cols=100 Identities=21% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCC------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------ 225 (277)
..++.+|||+||..|.++.-..++- +. .|.|||+-. +.. ...++++++ |+++..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 4578999999999999999555443 33 799999732 111 233455555 665431
Q ss_pred --CCCCceeEEecchhhhcC--Chhh-------HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 --PETGRYDVIWVQWCIGHL--TDDD-------FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l~~~--~~~d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++...|+|++-..-... ..-| ...++.-....++|+|.+++.-..
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 345789999975432111 1112 223444455677999999987443
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0031 Score=47.93 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
.+.+|+|||++.|..+.+++-+++..|+++++++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 56799999999999999999999999999999999999999988764
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.031 Score=51.61 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCccEEEeeccccHHHHHHHH--hC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLI--RY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~--~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..+..+.|+|.|.|.-...+.. +. ...++.||.|..|+.............+.....+..|...-+.- .....||
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi--~~~~~yD 276 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI--DIKNGYD 276 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC--Cccccee
Confidence 3456888999887754442222 22 33799999999999999888776222111111121222111111 1235699
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
+|++++.+++++... ....-.-+.+..++||.+++.|.-.+-+
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 999999999987332 2223444566789999999999865544
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0039 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCCCceeEEecchhhhcCCh------------------------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 225 TPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~~~------------------------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|.++.+++++++++|++.. .|+..+|+.=++-|.|||+++++
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 477899999999999999862 13566777778889999999997
Q ss_pred e
Q 023787 269 E 269 (277)
Q Consensus 269 e 269 (277)
=
T Consensus 237 ~ 237 (386)
T PLN02668 237 C 237 (386)
T ss_pred E
Confidence 3
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.008 Score=54.10 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=60.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-----------CC---C---cEEEEeCCHH-HHHHHHH------HhCCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-----------YF---N---EVDLLEPVSH-FLDAARE------SLAPENHMAPDM 210 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-----------~~---~---~v~gvD~S~~-~l~~a~~------~~~~~~~~~~~~ 210 (277)
.....+|+|+||..|..+..+... .. . +|..-|.-.. +-...+. .....+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~------ 87 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR------ 87 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT------
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc------
Confidence 456789999999999998877653 11 0 5666664322 1111111 000000
Q ss_pred CcceeEEEcCCCCCCCCCCceeEEecchhhhcCCh-------------------------------------hhHHHHHH
Q 023787 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFK 253 (277)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~-------------------------------------~d~~~~l~ 253 (277)
..-+.-+.+.+-+=.+|+++.|+++++.++|++.. .|+..+|+
T Consensus 88 ~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 88 NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01122233455444577899999999999998741 24667777
Q ss_pred HHHhcCCCCcEEEEE
Q 023787 254 RAKVGLKPGGFFVLK 268 (277)
Q Consensus 254 ~~~r~LkpGG~lii~ 268 (277)
.=++-|+|||++++.
T Consensus 168 ~Ra~ELv~GG~mvl~ 182 (334)
T PF03492_consen 168 ARAEELVPGGRMVLT 182 (334)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HhhheeccCcEEEEE
Confidence 778889999999987
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0036 Score=53.47 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=72.1
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCC-C--CCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP-D--MHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~-~--~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
+|||+-+|.|..+..++..++. |+++|-++.+....++.+........ . ...+++.+..|..++.. ...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999988886 99999999998888877765211100 0 12467888888766531 124799999
Q ss_pred cchhhhc----------------C--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGH----------------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~----------------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+--.+.| + .+.+-..+|..+.++-+ -++++.++
T Consensus 170 lDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp 220 (250)
T PRK10742 170 LDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRP 220 (250)
T ss_pred ECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecC
Confidence 4433322 1 12234466777666655 56666554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0026 Score=55.17 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=80.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
...+.++|-||.|.|.+.+....+ ...+++.+|+....++..++.++.-.. ...++++...-+|-..+- ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEeccHHHHHHHhccCCc
Confidence 457789999999999998877755 223899999999999998888764311 122567777777755442 335799
Q ss_pred eEEecchhhhcCChh--hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+.-..=--.|.. -...++.-+.+.||+||+++....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999943321111211 145788999999999999998753
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=53.25 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=77.4
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
.++++.||||..+-.|.=|.+++.-... .|++.|.+..-+...+.++...|. .+......|...++ ++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~- 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP- 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-
Confidence 4788999999999999888877765333 799999999999999988877654 33444555666554 44
Q ss_pred CceeEEe----cch--hhhc------CC-hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIW----VQW--CIGH------LT-DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi----~~~--~l~~------~~-~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||-|. |+. ++.- .. .. -..++|..+..++++||+|+.+.
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 3899998 333 1110 00 00 13467888899999999999874
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0017 Score=48.10 Aligned_cols=39 Identities=38% Similarity=0.705 Sum_probs=30.8
Q ss_pred ceeEEecchhhh--cC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIG--HL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~--~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.||+|+|..+.. |+ .|+-+..+|+++++.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999887644 33 3566899999999999999999883
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=50.55 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHhCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
.+.+|+|+|+|+|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 458999999999999999987522 1799999999999999998876
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0019 Score=55.84 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-HhCCCCCC---CCCCCcceeEEEcCCCCCCC-CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE-SLAPENHM---APDMHKATNFFCVPLQDFTP-ETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~-~~~~~~~~---~~~~~~~~~~~~~d~~~~~~-~~~ 229 (277)
...+++|||+|||.|.-.......+...+...|+|...++.-.- +....-.. ......-.......+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35678999999999999887777775679999999888742110 00000000 00000111111121112221 113
Q ss_pred --ceeEEecchhhhcCChhhHHHH-HHHHHhcCCCCcEEEEE
Q 023787 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 --~fD~Vi~~~~l~~~~~~d~~~~-l~~~~r~LkpGG~lii~ 268 (277)
.||+|.++.++...+ ....+ ......+++++|+++++
T Consensus 194 ~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999999887665 33344 66777788999988764
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.035 Score=43.50 Aligned_cols=95 Identities=20% Similarity=0.074 Sum_probs=62.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 215 (277)
....+.+++.+. .+. .++..+.+|+|+|.|+.....++.+...-+|+++++-.+..++-+.-..+. .....
T Consensus 55 pAtteQv~nVLS-ll~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr 125 (199)
T KOG4058|consen 55 PATTEQVENVLS-LLR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR 125 (199)
T ss_pred CccHHHHHHHHH-Hcc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence 344444555443 222 456689999999999999888877755799999999999998876554444 34566
Q ss_pred EEEcCCCCCCCCCCceeEEecchh
Q 023787 216 FFCVPLQDFTPETGRYDVIWVQWC 239 (277)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Vi~~~~ 239 (277)
|..-|+-.....+-.+-+|+....
T Consensus 126 f~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 126 FRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred hhhhhhhhccccccceEEEeehHH
Confidence 666666655544434444444333
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.052 Score=46.18 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHh-CCCCCCCCCCCcceeEEEcCCCC----CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQD----FTP 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~d~~~----~~~ 226 (277)
.+...+|+|+|+-.-+..++..... +++-+|+|...++...+.+ .... .-.+.-+++|++. ++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~- 150 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP- 150 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc-
Confidence 4678999999999988888765332 8999999999988654433 2211 1234445555442 22
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE-ecCCC
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIAR 273 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~ 273 (277)
..++==+++...++..+++.+...|+..+...|+||-.+++- |.+.+
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 223333455566889999999999999999999999999885 65543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=49.79 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred CCCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCCCCCCce
Q 023787 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (277)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~f 231 (277)
...++.+|+-+|+| -|..+..+++....+|+++|.|++-++.|++.-.+ .++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd------------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD------------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc------------EEEEcCCchhhHHhHhhC
Confidence 35678899998887 45677778875556899999999999999887544 122211 11111111349
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|+..-. . ..+....+.|++||++++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987655 2 4566677889999999998665
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.05 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHH-HHHHHhCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Vi 235 (277)
+++++-+|+..=.+-...+..+..++.-||.++--++ ..+.++. .+...|+. ++..-.++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 4578888888776666666677778888887641111 0111110 11111111 1111136899999
Q ss_pred cchhhhcCC---------hhhHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 236 VQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~---------~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
|..+++|+. +.--...+.++.++|||||.+++.=+++++.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 999998862 1123467889999999999999998877654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.026 Score=47.45 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEE
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~ 217 (277)
..+.+++.+.-+.. ..++.++||||.|.-..-..+-.+.+. +.+|.|+++..++.|+..+..+ ++ ...++..
T Consensus 62 h~laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----~~~I~lr 135 (292)
T COG3129 62 HHLADLLASTSGQI-PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----ERAIRLR 135 (292)
T ss_pred HHHHHHHHhcCCCC-CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----hhheeEE
Confidence 34455554433321 246789999999876554433223222 7999999999999999998765 32 2334443
Q ss_pred EcC-----CCCCCCCCCceeEEecchhhhc
Q 023787 218 CVP-----LQDFTPETGRYDVIWVQWCIGH 242 (277)
Q Consensus 218 ~~d-----~~~~~~~~~~fD~Vi~~~~l~~ 242 (277)
.-. +....-..+.||++.|+..||.
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcch
Confidence 321 1122222578999999999985
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.028 Score=52.60 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCccEEEeeccccHHHHHHHHh---CCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
...+|+-+|+|-|-+....++. ... ++++|+-+|.++-..+.+--. .. ..+++.+..|+..+..+..+.
T Consensus 367 ~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-~W-----~~~Vtii~~DMR~w~ap~eq~ 440 (649)
T KOG0822|consen 367 TTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-CW-----DNRVTIISSDMRKWNAPREQA 440 (649)
T ss_pred ceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-hh-----cCeeEEEeccccccCCchhhc
Confidence 3678999999999876655543 222 799999999988877653211 11 467999999999998665789
Q ss_pred eEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++++-. |.-+.+.+ -.+.|.-+.+.|||+|+.+=.
T Consensus 441 DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 441 DIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 9988643 23333223 246788899999999987643
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.056 Score=48.54 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=73.3
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC--C-ceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~-~fD~V 234 (277)
..+++|+=||.|.+...+...++.-+.++|+++..++.-+.++.. ..+...|+..+.... . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 468999999999999999888988899999999999999888763 334555655443221 1 78999
Q ss_pred ecchhhhcCChh-----------hHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDD-----------DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~-----------d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+.......++.. .+---+.++...++| .+++.||++.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g 119 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG 119 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch
Confidence 966544433211 122345566677788 8888899863
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=52.04 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCccEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
.+.+|||.=+|+|.=+..++.. +..+|+.-|+|+..++..++++..+++.. ..+...+.|+..+- .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHHHhhhccccCCE
Confidence 4579999999999988888777 34589999999999999999988776621 14677777766543 13468999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|=.-. +. ....++..+.+.++.||.|.++-
T Consensus 125 IDlDP----fG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDP----FG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC----CC--CccHhHHHHHHHhhcCCEEEEec
Confidence 84321 12 34479999999999999999973
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.15 Score=48.51 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (277)
..++.+|+-+|||. |..+...++.....|+++|.++.-++.+++. .. ++...+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence 45789999999995 6666666666555799999999999998873 21 111111100
Q ss_pred -CC----------CC--CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 224 -FT----------PE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 224 -~~----------~~--~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. +. -..+|+|+..-....-+ ....+.+++.+.+||||+++..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEE
Confidence 00 01 13689999766543221 1123359999999999998876
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.19 Score=42.81 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~V 234 (277)
.+.+||=+|=..-......+...+.+|+.+|+.+.+++..++.....++ .++.+..|+.+--++ .++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCEE
Confidence 5689999996654433323334556999999999999999888776544 388888888764322 3799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCc-EEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii~ 268 (277)
++...-- .+-+.-|+.+....||.-| ..+++
T Consensus 117 ~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 117 FTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp EE---SS---HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9876521 2357789999999998766 55554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.027 Score=41.59 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
..++..+...... ..+.....|||||+|.+.-.|...++. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3444444443333 345668999999999999988877876 778885
|
; GO: 0008168 methyltransferase activity |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.086 Score=46.23 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
+.++...+|.--|.|..+..+++.++. +++++|-.+.+++.|++++... ..++.+++.++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 567789999999999999999999864 7999999999999999998663 346777777665543 12
Q ss_pred CCceeEEe
Q 023787 228 TGRYDVIW 235 (277)
Q Consensus 228 ~~~fD~Vi 235 (277)
.+++|-|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34677766
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.085 Score=46.52 Aligned_cols=116 Identities=14% Similarity=0.213 Sum_probs=78.4
Q ss_pred CCccEEEeeccccHHHHHHHHhC-------C--------------CcEEEEeCCH--HHHHHHHHHhCCCC---------
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVS--HFLDAARESLAPEN--------- 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-------~--------------~~v~gvD~S~--~~l~~a~~~~~~~~--------- 204 (277)
+..+||-||.|.|.-...++... . -.++.||+.+ ..++.....+....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999998766666543 0 1689999874 35555555554430
Q ss_pred -C-CCCCCCcceeEEEcCCCCCCCCC-------CceeEEecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 205 -H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 205 -~-~~~~~~~~~~~~~~d~~~~~~~~-------~~fD~Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
. ......-++.|.+.|+..+..++ ...|+|...+++..+ ....-.++|.++-..++||-.++|+|.-+
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 11112347889999987765321 257888887776643 12356689999999999999999998654
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.075 Score=48.68 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-C----CCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~----~~~~~~ 227 (277)
..++.+||.+|||. |..+..+++.... +++++|.++..++.+++.... ..+.+...+ + .++ ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHH-cC
Confidence 45678999999998 8888888877654 599999999999999875321 111111111 0 111 11
Q ss_pred CCceeEEecchhh-------hc----C--ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCI-------GH----L--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l-------~~----~--~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+|+|+-+-.- ++ . +..+....+.++.+.|+|+|.+++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2368988764211 11 1 01122467889999999999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=46.07 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-C-CCCC------
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-P-LQDF------ 224 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d-~~~~------ 224 (277)
.+.+.+||-+|+| .|..+...++. +..+|+.+|+++.-++.|++ +.... +..... + ..++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHHHh
Confidence 5678999999999 46666655554 45599999999999999999 44311 111111 0 1110
Q ss_pred CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
......+|+.+.+..++ ..++.....+|+||.+++.+.-
T Consensus 237 ~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred hccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccC
Confidence 12224588887655432 5666677889999998888653
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.22 Score=47.21 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC---C--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCC---
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTP--- 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~---~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~--- 226 (277)
.+..+|.|-.||+|.+.....+.. . ..++|.|+++.....|+.++--.+... .+.....|- .+...
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCccccc
Confidence 455699999999998766544332 1 359999999999999999876544321 122222222 11111
Q ss_pred -CCCceeEEecchhhh-------------------c--C-C-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 -ETGRYDVIWVQWCIG-------------------H--L-T-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 -~~~~fD~Vi~~~~l~-------------------~--~-~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+.||+|+++..+. + + + ...-..+++.+...|+|||+..|.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 336799998775543 0 0 0 111267999999999999866654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.04 Score=48.81 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C-C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 227 (277)
+.++...+|.--|.|..+..+++.... +++|+|-.+.+++.|++++... ..++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 457789999999999999999987554 8999999999999999988753 357888888877653 2 3
Q ss_pred CCceeEEec
Q 023787 228 TGRYDVIWV 236 (277)
Q Consensus 228 ~~~fD~Vi~ 236 (277)
..++|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.047 Score=49.00 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=41.3
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~---------~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..+.+..++|+|.|+|.++..+++.. ..++..|++|+...+.=+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34567889999999999999888752 228999999999999888888763
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.14 Score=46.07 Aligned_cols=97 Identities=22% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.++.+||-.||| .|..+..+++.. ..+|+++|.++.-++.+++.-.. .-++....++.+.....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD---------KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc---------EEecCCcccHHHHhccCCCCCE
Confidence 356789988886 455666666554 33699999999999988764221 1111111122221111235898
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-.-.- ...+..+.+.|++||++++..
T Consensus 239 vid~~G~--------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGH--------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 8754321 146677888999999999864
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=43.07 Aligned_cols=103 Identities=17% Similarity=0.009 Sum_probs=63.5
Q ss_pred cCCCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023787 153 ARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (277)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (277)
....++.+||=+|++.|....++..- ++. -|++|+.|+..=...-..... ..|+--+.-|+..-. ..
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchheeee
Confidence 34678999999999999988777644 233 699999987543333222222 234444445554311 11
Q ss_pred CCceeEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+-.|+|++--. .+| ...+.-++.-.||+||.++++
T Consensus 224 VgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 235666665332 223 334556788899999999987
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.023 Score=48.24 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=46.3
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.+|||.-+|-|..+..++..+. +|+++|-||.+-...+. +.............+++.+.+|..++- .++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997776666 59999999987555443 222111100011257899999988753 446799999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
++-..|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 96555443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.092 Score=46.88 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=62.9
Q ss_pred EEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEecchh
Q 023787 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC 239 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~ 239 (277)
|+|+-||.|.++.-+...++.-+.++|+++...+.-+.++.. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 589999999999998888887778899999999998888753 1233555554321 125788885433
Q ss_pred hhcCC--------hhhHHHHHHH---HHhcCCCCcEEEEEecCC
Q 023787 240 IGHLT--------DDDFVSFFKR---AKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 240 l~~~~--------~~d~~~~l~~---~~r~LkpGG~lii~e~~~ 272 (277)
...++ ++....++.+ +.+.++| .+++.||++
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccH
Confidence 22221 0112223333 3344576 478889985
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.092 Score=43.70 Aligned_cols=105 Identities=8% Similarity=0.000 Sum_probs=54.7
Q ss_pred CCccEEEeeccccHHHHHHHHh---C-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
++..|+|+|.-.|..+..++.. . . .+|+|+|+.....+. +..+..++ ..+++++++|..+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~-----~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM-----SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc-----cCceEEEECCCCCHHHHHHHH
Confidence 5679999999999988866542 2 2 389999995332221 12221111 367999999877542
Q ss_pred -C-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 -P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 -~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
. ......+|+ -.+-|.- +.....|+....+++||+++++-|..
T Consensus 105 ~~~~~~~~vlVi-lDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 105 ELASPPHPVLVI-LDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SS----SSEEEE-ESS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HhhccCCceEEE-ECCCccH--HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 0 112333444 2232222 25567788899999999999987653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.062 Score=47.67 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEEec
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~Vi~ 236 (277)
+++|+=||.|.++..+...++.-+.++|+++...+.-+.++. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 689999999999999988888889999999999999988873 44667777664 332 5999985
Q ss_pred chhhhcC---------Chh--hHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 237 QWCIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 237 ~~~l~~~---------~~~--d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.....-+ .++ .+-.-+-++.+.++| .+++.||+..
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~ 113 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPG 113 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccce
Confidence 5433222 111 122233444555688 4566698753
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.52 Score=40.89 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=68.8
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-------CCCCC
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-------TPETG 229 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-------~~~~~ 229 (277)
...|+.+|||-=.-...+.......+.=+|. |++++.-++.+...+. ....+..++..|+.+ + .+...
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3469999999755444332111113444554 4455655555654221 113456777778752 1 12223
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.--++++-.++.|++.++...+|+.+.+...||+.+++.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455788889999999999999999999998899988874
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.47 Score=43.00 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=63.8
Q ss_pred CCccEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCC-C-CCCCC-Cc
Q 023787 157 QHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQ-D-FTPET-GR 230 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~~-~~ 230 (277)
++.+|+=+|||+ |.++..+++. +..+|+++|.++.=++.|++....... ..... +.. . ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCC
Confidence 334899999994 7776666655 345899999999999999986544211 00000 000 0 01111 26
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|+++-+-. . . .++..+.++++|||.+.+.-..
T Consensus 239 ~D~vie~~G---~---~--~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---S---P--PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---C---H--HHHHHHHHHhcCCCEEEEEecc
Confidence 999984443 1 1 4888999999999999987443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.18 Score=44.29 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=46.2
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
+...+..++... ..++..|||.=||+|..+.. +.+...+.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345556655432 45889999999999999884 445566799999999999999999754
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.26 Score=41.16 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCC---------------------------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPEN--------------------------- 204 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~--------------------------- 204 (277)
...+-++.|-.||.|.+.--+.--+.. .|.+.|+++.+++.|++|+.-..
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 356789999999999876644333222 89999999999999999873210
Q ss_pred ---------CCCCCCCcceeEEEcCCCCCC-----CCCCceeEEecchhhhcCC-------hhhHHHHHHHHHhcCCCCc
Q 023787 205 ---------HMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 205 ---------~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Vi~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG 263 (277)
+............+.|+.+.. ......|+|+.-....+++ ..-...+|..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 000001123556777777632 1112469998655444432 2236789999999996666
Q ss_pred EEEEEe
Q 023787 264 FFVLKE 269 (277)
Q Consensus 264 ~lii~e 269 (277)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666654
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.54 Score=44.26 Aligned_cols=46 Identities=17% Similarity=0.018 Sum_probs=39.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
....+++|+=||.|.++..+-..++.-|.++|+++.+.+.-+.++.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 3467999999999999999887788778999999999888888763
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.1 Score=47.83 Aligned_cols=58 Identities=7% Similarity=0.180 Sum_probs=51.7
Q ss_pred cceeEEEcCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 212 ~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+++++..++.+.. .++++||.++....+.++++++..+.++++.+.++|||++++--
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 56888888888763 45689999999999999999999999999999999999999863
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.19 Score=41.91 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=39.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
.-+...+..++... ..++..|||.=||+|..+.... ....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 34455666666533 3478899999999999998554 555579999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.81 Score=40.44 Aligned_cols=93 Identities=23% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC------CCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 227 (277)
..++.+||..|+| .|..+..+++....+|++++.++...+.+++.- . +.+...-... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~------------~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-A------------DEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-C------------CEEEcCCCcCHHHHHHHhc
Confidence 4466789888876 477887787765557999999999998886531 1 0111110000 112
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+.+|+|+.+... ...+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988754321 14778889999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.46 Score=35.92 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=58.5
Q ss_pred cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----C-CCCCceeEEecchhh
Q 023787 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (277)
Q Consensus 167 GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~Vi~~~~l 240 (277)
|.|..+..+++....+|+++|.++.-++.+++.-.. .++...-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887668899999999999999875322 1111111111 0 122479999854331
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
. ..++.+..+|+|||++++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 2 58888899999999999975543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.28 Score=46.60 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (277)
..++.+|+-+|||. |..+..++......|+++|.++.-++.++. +.. +++..+..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 34678999999995 566666665554569999999998888876 321 111111100
Q ss_pred -------------CCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 224 -------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 224 -------------~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+...-..+|+|+..-.+..-+ ...-+.+++.+.+|||++++-
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 110124699998776554433 222467888999999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.18 Score=41.39 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=71.8
Q ss_pred CCccEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
.+..|+|+|.-.|..+..++.. .. .+|.++|++-..++.+... .+.+.|+.++-.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 5678999999999988877654 22 2799999997766655443 256889988766542
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
...+.--+.+|-.+-|+.. ...+.++...++|.-|-++++-|.+.+
T Consensus 138 ~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccccc
Confidence 1112223344555666654 566778888899999999999876544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.3 Score=37.58 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCcee
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 232 (277)
.++.+||..|+|. |..+..+++....+|++++.++...+.+++..... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 5678999999995 77777777665568999999988888776542110 00000000000 0 01235799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+.+..- . ..+..+.+.|+++|.++....
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356667788999999987643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.31 Score=43.98 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=72.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi 235 (277)
+.+|||-=+|||.=+..++..... +|+.-|+||..++..++|+..+.. .+...+..|...+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEEe
Confidence 579999999999988888766554 899999999999999999887521 2333444555443222 25788773
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.- -+. ....++..+.+..+.||++.++-
T Consensus 127 iD----PFG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 ID----PFG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cC----CCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 21 112 24478889999999999999973
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.64 Score=41.74 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCCccEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.++.+||-+||| .|..+..++++ +..+|+++|.++.-++.+++ +.. .....++. +...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------------~~~~~~~~----~~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------------TYLIDDIP----EDLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------------eeehhhhh----hccCCc
Confidence 467899999987 34455556654 24479999999988888764 211 00001111 112488
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+-.-.- . .....+....+.|++||++++.-
T Consensus 225 ~viD~~G~-~----~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAFECVGG-R----GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEEECCCC-C----ccHHHHHHHHHhCcCCcEEEEEe
Confidence 88743220 0 11257888889999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.3 Score=44.20 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
.+-..++|+|.|.|.++..+.-.+.-.|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4556899999999999997765555589999999877777654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.6 Score=38.96 Aligned_cols=92 Identities=14% Similarity=-0.032 Sum_probs=58.4
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-.|+| .|..+..+++....+|++++.++.-++.+++.-... .+ +..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~---------vi-----~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS---------AG-----GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce---------ec-----ccccc--CcccceE
Confidence 4567899999975 445555566554446999999998888887743221 01 11111 1235787
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..... + ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~~---~-----~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA---G-----GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc---H-----HHHHHHHHhhCCCcEEEEEec
Confidence 6543221 1 467788899999999988654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.39 Score=40.53 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred CccEEEeeccccHHHHHHHHhCCC----------cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~----------~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (277)
-.|++|+.+..|.++..+.++.+. .+++||+-+ |. . -..+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------P---------I~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------P---------IEGVIQLQGDITSASTA 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------c---------cCceEEeecccCCHhHH
Confidence 358999999999999988776433 389999743 11 1 234666778887643
Q ss_pred ------CCCCceeEEecchh-----hhcCC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 226 ------PETGRYDVIWVQWC-----IGHLT----DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 226 ------~~~~~fD~Vi~~~~-----l~~~~----~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|...+.|+|+|-.+ +|.++ .+-+..+|.-...+|||||.|+-
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 44468999998764 44333 12255667778899999999874
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.58 Score=39.73 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=44.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
+...+..++... ..++..|||-=||+|..+.... +...+++|+|+++...+.+.+++..
T Consensus 149 P~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345555555422 3477899999999999988655 4444699999999999999988754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.54 Score=45.85 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred ccEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHhCCCCCC---CCCCCcceeEEEcCCCCCCCCC--
Q 023787 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~-- 228 (277)
..|+-+|+|-|-+....++. +.. +|++||-++..+.....+....... .......++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46999999999876655543 222 7999999966544444443211111 1112346899999999885331
Q ss_pred ---------CceeEEecchhhhcCChhh-HHHHHHHHHhcCCC----CcE
Q 023787 229 ---------GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKP----GGF 264 (277)
Q Consensus 229 ---------~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~Lkp----GG~ 264 (277)
+++|+||+-. |.-|.+.+ -.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 3799998733 22222222 23456666777765 776
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.71 Score=41.08 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++. ... .-+.....++.......+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD--------ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC--------EEEcCCchhhhhhhccCCCccEE
Confidence 678888888875 6677767766443 699999999888866653 211 00111101111221122459999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+... . ..++.+.+.|+++|+++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 3567788999999999865
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.095 Score=46.06 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.2
Q ss_pred ceeEEEcCCCCC--CCCCCceeEEecchhhhc------C----Chh----hHHHHHHHHHhcCCCCcEEEEE
Q 023787 213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 213 ~~~~~~~d~~~~--~~~~~~fD~Vi~~~~l~~------~----~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++++|..+. .+++++||+|++.-.+.- . ..+ -+..++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345677777664 255679999998644310 0 001 1357899999999999999985
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.1 Score=40.27 Aligned_cols=96 Identities=25% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~---S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
.++.+||-+|+| .|..+..+++....+|++++. ++.-++.+++.-.. .+.....+..+.. ..+.|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----------~v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT----------YVNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE----------EecCCccchhhhh-hcCCC
Confidence 356789999987 366666676654447999986 67777777653211 0111111111101 12468
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+-.-.- . ..+....+.|++||.+++.-.
T Consensus 240 d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATGV------P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcCC------H--HHHHHHHHHccCCcEEEEEec
Confidence 988854431 1 367788899999999987643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.1 Score=40.44 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=61.6
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... .-++.... ++.+ . ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 456789999997 4788888888775557999999998888776444321 11111110 1110 0 01123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898874322 1 35677888999999998753
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.18 Score=44.14 Aligned_cols=107 Identities=22% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCccEEEeeccccHHHH-HHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~-~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+..|.|+=+|.|.++. .+...+...|.++|.+|..++..++++..++. ..+...+.+|-.. +.+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchhee
Confidence 34789999999999999 66777888999999999999999999877533 1222233344333 22345677776
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCC-Cc-EEEEEecCCCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG-~lii~e~~~~~~ 275 (277)
.... |..+ +-.-.+..+||| || ++=|.||+..++
T Consensus 268 LGLl----PSse--~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 268 LGLL----PSSE--QGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred eccc----cccc--cchHHHHHHhhhcCCcEEEEeccccccc
Confidence 4432 2111 233334456666 44 666778886543
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.93 Score=38.98 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCccEEEeeccccHHHHHHHH---hC---CCcEEEEeCC--------------------------HHHHHHHHHHhCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLI---RY---FNEVDLLEPV--------------------------SHFLDAARESLAPE 203 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~---~~---~~~v~gvD~S--------------------------~~~l~~a~~~~~~~ 203 (277)
.-+..|+|+||-.|..+..+.. .+ ..++.+.|.= ...++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4557899999999987764432 21 1267777621 12355566666554
Q ss_pred CCCCCCCCcceeEEEcCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 204 NHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++. ..++.++.+.+.+.. .+..++-++..-.-+. +-....|..++..|.|||+++|-|-
T Consensus 153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 431 357888888765432 1223444443322221 1345789999999999999999764
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.22 Score=46.42 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (277)
..++.+|||.=|++|.-+...+...+. +|++-|.++..++..+++...++. ...++-...|+..+- ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence 346789999999999999988877544 899999999999999998877533 122333344443321 123
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..||+|-.--. . ....||..+.+.++.||.++++
T Consensus 182 ~~FDvIDLDPy----G--s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 182 KFFDVIDLDPY----G--SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cccceEecCCC----C--CccHHHHHHHHHhhcCCEEEEE
Confidence 68998853221 1 2337889999999999999997
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.57 Score=41.45 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=70.8
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.-.+.+|.-||.| .|..+..++.-....|+.+|+|..-++.....+.. ++...-....++...-.+.|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDl 234 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADL 234 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccE
Confidence 3456788889998 46777777755555899999998888877776643 355555544444322357899
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
||..-.+---. ...-+.+++...||||++++=
T Consensus 235 vIgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 235 VIGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 98765554433 445688999999999998873
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.99 Score=36.37 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred EeeccccHHHHHHHHhCC-C-cEEEE--eCCHHHHHHHH---HHhCCCCCCCCCCCccee-EEEcCCCCCC----CCCCc
Q 023787 163 DCGSGIGRITKNLLIRYF-N-EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGR 230 (277)
Q Consensus 163 DiGcGtG~~s~~l~~~~~-~-~v~gv--D~S~~~l~~a~---~~~~~~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~ 230 (277)
=||=|.=.++..|++... . .+++. |......+.-. +++.... ...+. ....|++++. ...+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCc
Confidence 356677777887877644 2 45444 44433333221 2222110 01122 2345666664 24579
Q ss_pred eeEEecchhhhc-----------CChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGH-----------LTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~-----------~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
||.|+.++.-.. ....=+..+|+.+..+|+++|.+.|+
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998876322 00122678999999999999999987
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.2 Score=41.41 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=55.2
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
-++.+|+-+|||. |......++....+|+++|.++.-++.|+.. |. +. .++.+. . ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~---------~~--~~~~e~-v--~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY---------EV--MTMEEA-V--KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC---------EE--ccHHHH-H--cCCCEE
Confidence 3678999999995 5555555544444799999998877777652 11 11 111111 1 257999
Q ss_pred ecchhhhcCChhhHHHHHHH-HHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~-~~r~LkpGG~lii~e 269 (277)
+..-. . ..++.. ..+.+|+||+++..-
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 86432 1 134544 488999999998764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.9 Score=37.85 Aligned_cols=110 Identities=17% Similarity=0.057 Sum_probs=69.5
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (277)
...++.+|||+.+-.|.=+..+++.... .|++=|.++.=+...+.......- .+......++..++
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~------~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS------PNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC------cceeeecccceeccccc
Confidence 3678999999999999999888877442 588999998877776666533211 22222222332222
Q ss_pred ------CCCCceeEEecc-----h-hhhcCCh---------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 ------PETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ------~~~~~fD~Vi~~-----~-~l~~~~~---------------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....||-|.+- . ++.+.++ .-...++.+..++||+||.++-+.
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 122468887732 1 1111110 012457899999999999999874
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.15 Score=46.60 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
.+++..|.|+-||.|-++..++.++. +|++-|.+++++++.+.+++.+... ..++..+..|..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHH
Confidence 35788999999999999999888875 6999999999999999998876542 223555555543
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.91 E-value=3.2 Score=35.60 Aligned_cols=93 Identities=16% Similarity=-0.005 Sum_probs=57.9
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+||-.|||. |..+..+++....+ |++++.+++..+.+++.-... .-.... .. ......+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~~-~~----~~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAADT-AD----EIGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------cccccc-hh----hhcCCCCC
Confidence 45678888888875 66666677665555 999999999888776542010 000000 00 01224689
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+..-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88853221 1 3567778889999999865
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.29 Score=45.67 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=71.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-------CCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-------DFTPE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~~~~ 227 (277)
.....+|-+|-|.|.+...+....+ ..+++|++.|.|++.|++++.-..- .+....-.|.. ....+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhcccc
Confidence 4567899999999999887765555 3899999999999999998754210 11111111211 11124
Q ss_pred CCceeEEec----chhhhcC--Chhh--HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~----~~~l~~~--~~~d--~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..||+++. .. .|-+ ++.. -..++..++..|.|-|.+++--.+
T Consensus 368 ~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred ccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 568999872 23 3333 2222 346899999999999999875433
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.37 Score=40.94 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=32.1
Q ss_pred EEEcCCCCC--CCCCCceeEEecchhhh----c-----CC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 216 FFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 216 ~~~~d~~~~--~~~~~~fD~Vi~~~~l~----~-----~~----~~d~~~~l~~~~r~LkpGG~lii 267 (277)
++++|..+. ..+++++|+|+..-... + +. .+-...++.+++|+|||||.+++
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 344554433 35567788887653221 0 00 11245789999999999999886
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.16 E-value=3.9 Score=36.80 Aligned_cols=98 Identities=16% Similarity=-0.019 Sum_probs=58.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C--CCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F--TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~ 229 (277)
..++.+||-.||| .|..+..+++.... +|+++|.++.-++.+++.-.. .-++....+..+ + .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence 4567899999876 35566666665443 599999999988888653211 001111111100 0 01123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+-.-.- . ..+....+.+++||++++.-
T Consensus 245 g~d~vid~~g~------~--~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVIDAVGR------P--ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEEECCCC------H--HHHHHHHHHhccCCEEEEEC
Confidence 58988743221 1 35667778999999999764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.6 Score=37.23 Aligned_cols=86 Identities=21% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCccEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.++|=+||| .|.++..+++.. ...|.++|.++..++.+.... . + +..+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~--------i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----V--------L-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----c--------c-----Chhhc--cCCCCCEE
Confidence 45678888876 566777677654 345778898887776664321 0 0 10000 12468988
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+-+-.- . ..+..+.+.|++||++++.-
T Consensus 205 id~~G~------~--~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGD------P--SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCC------H--HHHHHHHHhhhcCcEEEEEe
Confidence 854331 1 46677888999999999763
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.86 E-value=1 Score=44.40 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-------C-----C-cEEEEeCC---HHHHHHHHHHhC-----------C-----C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARESLA-----------P-----E 203 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------~-----~-~v~gvD~S---~~~l~~a~~~~~-----------~-----~ 203 (277)
....+|+|+|-|+|......++.. + . +++.+|.- .+.+..+-+... . .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999999776665432 2 1 78888853 333333322111 0 0
Q ss_pred CCCCC---CCCcceeEEEcCCCCCCC-CCCceeEEecch-hhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 204 NHMAP---DMHKATNFFCVPLQDFTP-ETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 204 ~~~~~---~~~~~~~~~~~d~~~~~~-~~~~fD~Vi~~~-~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++... .....++...+|+.+... -...||+++.-. +-...|+-=-..+|+.++++++|||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 11000 001245566677755321 125699998543 2223231112479999999999999987
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.1 Score=30.02 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEecch
Q 023787 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (277)
Q Consensus 166 cGtG~~s~~l~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Vi~~~ 238 (277)
||.|..+..+++. ....|+.+|.++..++.+++.. ..++.+|..+.. ..-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 5666777666554 3336999999999988887642 557888887643 2224688777654
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. ++.....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4 223334555566777788777764
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.5 Score=36.38 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-+||| .|..+..+++....+|++++.++..++.+++. ... .-+.....+...- ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~--~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-GAD--------EVVDSGAELDEQA--AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCc--------EEeccCCcchHHh--ccCCCCE
Confidence 4567789999987 77777777766555799999999988888542 211 0000000000000 1245898
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++....- . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS------G--AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc------H--HHHHHHHHhcccCCEEEEEC
Confidence 8754221 1 35677788999999998763
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.6 Score=35.64 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=55.8
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---------CCC
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 228 (277)
..|+.+|||-=.....+...... .+.-+|. |.+++.-++.+...+.. ...+..++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGAR---PPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHH---HHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCccc---CCcceeEEeccccchhhHHHHHHhCCCC
Confidence 38999999987777767654322 5666665 44555555555442100 0123567888888532 234
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHH
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRA 255 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~ 255 (277)
+.--++++-.++.|++.++...+|+.+
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 566788888999999988888888776
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.15 E-value=5.1 Score=35.34 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 228 (277)
..++.+||-+|+| .|..+..+++....+ +++++.++...+.+++.... .++..+-.+. ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4567799999876 366666666665444 89999999988887543210 1111110000 0123
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+.+..- . ..+..+.+.|+++|+++...
T Consensus 225 ~~vd~v~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV------P--KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence 568999854220 1 46777788999999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.00 E-value=6.5 Score=34.72 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=59.8
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCC--CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~--~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++ +... .-++.... +..+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeccccccHHHHHHHhCCC
Confidence 456789998884 57888888887755579999999988888865 3221 11111110 11110 01124
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+-.-. . ..+....+.|++||+++..
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6998885322 1 2457778899999999975
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=87.93 E-value=7.5 Score=32.59 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccH--HHHHHHH--h-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLLI--R-YFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~--~s~~l~~--~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~ 210 (277)
++..+|+..+.. ...-..|++..|+.|. .+..|+. + -..++++|-+.+.-+...++.+...++
T Consensus 27 p~~aEfISAlAA-------G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~----- 94 (218)
T PF07279_consen 27 PGVAEFISALAA-------GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL----- 94 (218)
T ss_pred CCHHHHHHHHhc-------cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----
Confidence 344566655443 3445678898766442 3343332 2 222789998888888888887776544
Q ss_pred CcceeEEEcCC-CCCCCCCCceeEEecchhhhcCChhhHH-HHHHHHHhcCCCCcEEEEEecCCC
Q 023787 211 HKATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 211 ~~~~~~~~~d~-~~~~~~~~~fD~Vi~~~~l~~~~~~d~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
...++|+.++. +++...-...|+++.-.-. ++.. .+|+.+. +.|.|-+++..|...
T Consensus 95 ~~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 95 SDVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred cccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 24468887764 3322222357877643332 2444 5555433 567788888888644
|
The function of this family is unknown. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.9 Score=37.50 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC-CC
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE-TG 229 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-~~ 229 (277)
..++.+||=.| .|.|.++..|++.....++++--|++-.+.+++...+ ..+++...|+.+-. .. ..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 45688999998 4577888888887653577777787777766665443 22333333322211 11 23
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.+|+|+..-. . ..+.+..+.|+++|.++..-...
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986544 2 56677888999999999875543
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.79 E-value=2 Score=38.26 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred ccEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeE
Q 023787 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~ 233 (277)
.+||=.|+ |.|..+..+++.... +|++++.+++-.+.+++.+... ..+.....++.+ + ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 78988885 678888888876554 6999999988888877654321 111111111110 0 011246999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+..-. . ..+..+.+.|+++|+++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 985322 1 2346778899999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.4 Score=36.13 Aligned_cols=99 Identities=16% Similarity=-0.045 Sum_probs=58.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CC-CCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~ 230 (277)
..++.+||=.|+| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++....+..+ +. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT---------ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc---------eEeCCCchhHHHHHHHHhCCC
Confidence 4567788888876 35556656655433 699999999999888653211 001111111100 00 11136
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+|+-.-.- . ..+..+.+.|++||++++.-.
T Consensus 260 ~d~vid~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAGS------V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCCC------h--HHHHHHHHHHhcCCEEEEEcc
Confidence 8988843220 1 466777788999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.36 E-value=6.7 Score=35.15 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=34.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~ 199 (277)
..++.+||-+|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999965 6666667766544799999999999888653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.33 E-value=5.5 Score=34.51 Aligned_cols=97 Identities=15% Similarity=0.009 Sum_probs=57.4
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE--cCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~f 231 (277)
.++.+||-+|+| .|..+..+++.... .|+++|.++.-++.+++.-... -++... ..+.+. .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHH-hCCCCC
Confidence 367789999876 45555556655443 5899999998888877642210 011000 000001 112358
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+-.-.- . ..++.+.+.|+|+|++++.-.
T Consensus 189 d~vid~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSGA------T--AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCCC------h--HHHHHHHHHhcCCCEEEEecc
Confidence 888753320 1 467778889999999998654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=87.28 E-value=7.3 Score=34.59 Aligned_cols=98 Identities=20% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
..++.+||=+|+| .|..+..+++....+ |++++.++.-++.+++.-.. .-++....+...+. .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD---------FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCCcchHHHHHHHhCCCC
Confidence 4467888888875 344555566554445 99999999888888653211 00111111100000 11236
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+-.-.- . ..+....+.|+++|++++.-
T Consensus 232 ~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------T--AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------H--HHHHHHHHHhhcCCEEEEEc
Confidence 8998844321 1 35566778899999998753
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.8 Score=36.50 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=61.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... ..+++... +..+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 457789999886 5777887787765557999999988888887644321 11111110 1100 0 01114
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+-.-. . ..+..+.+.|+++|+++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898875322 2 4567788999999999875
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.40 E-value=4.2 Score=33.53 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..+.+||-+|.- ||..+..++.+ ..+|+.+|+.|.|--.. ..+++|... ..+..+.+|+|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dli 103 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDLI 103 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeEE
Confidence 467899999986 88888888866 44799999998774433 223555443 33456899999
Q ss_pred ecchhhhcCChh
Q 023787 235 WVQWCIGHLTDD 246 (277)
Q Consensus 235 i~~~~l~~~~~~ 246 (277)
+-.-.+..+.++
T Consensus 104 vDlTGlGG~~Pe 115 (254)
T COG4017 104 VDLTGLGGIEPE 115 (254)
T ss_pred EeccccCCCCHH
Confidence 988777776643
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.30 E-value=3.2 Score=36.52 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=59.7
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (277)
..++.+||=.| .|.|..+..+++....+|++++.++.-.+.+++ +... .-++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 45678888887 467778777877655579999999988888876 3221 111111111100 0 011246
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+|+-.-. . ..+....+.|+++|+++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898884322 1 4567888899999999865
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.2 Score=40.72 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=53.5
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|+=+|+| .|..+...+.....+|+++|.++.-++.+...+.. .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999998 56666666655444699999998777666554422 01110011111110013689999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
..-.....+ ...-+-+++.+.++||++++-
T Consensus 236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 754221110 000122455566899987764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=85.22 E-value=6.2 Score=35.02 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||..|+| .|..+..+++... ..+++++.++...+.+++.-.. .-+.....++ ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHH-cCC
Confidence 4467788887775 4667777776655 3688888888777777653211 1111111111 111 122
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|+|+....- . ..+..+.+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 468988854221 1 4677788899999998864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.58 E-value=12 Score=33.01 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC----CCCCCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~ 229 (277)
..++.+||-.|+|. |..+..+++....+|+++..+++..+.+++.... .-+.....+ +... .+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 45677899998874 7777777776555799998888888887553211 111111111 1111 1224
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999865321 145677888999999988653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=84.57 E-value=5.4 Score=36.55 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh------CCC--cEEEEeC----CHHHHHHHHHHhCCCCCCCCCCCcceeEEEc---
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR------YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV--- 219 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~------~~~--~v~gvD~----S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--- 219 (277)
.....+|+|+|.|.|.-=..|++. ++. ++|+|+. +..-++.+.+++....- ..+...+|...
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~---~lgv~fef~~v~~~ 184 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFAR---SLGVPFEFHPVVVE 184 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHH---HcCccEEEEecccC
Confidence 346679999999999754445443 222 8999999 78888887777643210 00122344432
Q ss_pred CCCCCC-----CCCCceeEEecchhhhcCChhh-----HHHHHHHHHhcCCCCcEEEEE
Q 023787 220 PLQDFT-----PETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 220 d~~~~~-----~~~~~fD~Vi~~~~l~~~~~~d-----~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++++. ..++..=+|-|...+||+.++. ....+-+..+.|+|.-.+++-
T Consensus 185 ~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 185 SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 333332 2334444555777889986321 223344455578999555443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=84.54 E-value=5.4 Score=35.35 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=71.8
Q ss_pred CccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---------C
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------P 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 226 (277)
...|+-+|||-= ++..--..+. .|.=+|. |+.++.=++.+.+.+.. ......++..|+.+.. +
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~---~~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGAT---PPAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCC---CCceEEEEeccccccchHHHHHhcCC
Confidence 468999999853 3322112332 5666665 55666656666654321 1225778888887432 2
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....-=++++-+++.|++.+...++|..+...+.||-.+++..
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2345567888999999999999999999999999999888764
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.83 E-value=10 Score=34.47 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=56.8
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (277)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++. ... .-++.... ++.+ . ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~--------~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT--------DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc--------EEEecccccchHHHHHHHHhC
Confidence 4567899999886 34555556655443 699999999999888653 210 11111100 0100 0 0111
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
+.+|+|+-.-.- . ..+......+++| |++++.-
T Consensus 267 ~g~dvvid~~G~------~--~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN------V--EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC------h--HHHHHHHHhhhcCCCEEEEEc
Confidence 258988754331 1 4566777788886 9887754
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=4 Score=36.47 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=55.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 230 (277)
..++.+||=.||| .|..+..+++.... .|++++.++.-++.+++. ... .-++....+...+ ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~--------~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM--------QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc--------eEecCcccCHHHHHHHhcCCC
Confidence 3467789999876 34455555555444 478999999888887543 211 0011110010000 011235
Q ss_pred ee-EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD-~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+| +|+-+-. . ...+....+.|++||.+++.-.
T Consensus 229 ~d~~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILETAG-----V---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 66 5543221 0 1467788899999999998743
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.79 E-value=15 Score=32.73 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-------CCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~ 225 (277)
..++.+||-.|+|. |..+..+++....+ |++++.++...+.+++. ... .-+.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT--------HTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc--------EEeccccccchhHHHHHHHH-
Confidence 45677888888765 66777777665545 89999888888877553 221 001111111 1111
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.....+|+|+.+... . ..+....+.|+++|+++..
T Consensus 230 ~~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 122459999864331 1 3677788899999998865
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.64 E-value=9.9 Score=33.12 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=51.0
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+.-. +.....+... -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHhH----hcCCCEEEEc
Confidence 466788884 456665655554 59999999988887765311 1101111111 1357888877
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
-.. .....+++++...++|+-++
T Consensus 65 vp~-----~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LPI-----GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCH-----HHHHHHHHHHHHhCCCCcEE
Confidence 543 34456788888888877443
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.37 E-value=5.5 Score=35.23 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=51.8
Q ss_pred ccEEEeeccc--cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 159 LVALDCGSGI--GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 159 ~~VLDiGcGt--G~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+|.=||+|. +.++..+...+. .+|+++|.++..++.+++. +. ......+..+. -...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--------~~~~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--------GDRVTTSAAEA---VKGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--------CceecCCHHHH---hcCCCEEE
Confidence 5789999886 234444544444 3799999999887776542 11 00011121111 13578888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+-... ....++..+...+++|..++.
T Consensus 72 iavp~~-----~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVG-----ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHH-----HHHHHHHHHHhhCCCCCEEEe
Confidence 665432 234566777777888876543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=82.32 E-value=5.4 Score=36.94 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=51.8
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+-+|+|. |......++....+|+++|.++.-...+... |. ...++.+. . ...|+|+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G~-----------~v~~leea-l--~~aDVVI 255 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----GF-----------RVMTMEEA-A--KIGDIFI 255 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----CC-----------EeCCHHHH-H--hcCCEEE
Confidence 578999999995 5555545544444799999888644333321 11 11122221 1 2468887
Q ss_pred cchhhhcCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~e 269 (277)
+.-. . ..++. +....+|+|++++..-
T Consensus 256 taTG-------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 256 TATG-------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 6432 1 23444 4778899999998763
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=14 Score=31.20 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=44.6
Q ss_pred cEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC----
Q 023787 160 VALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE---- 227 (277)
Q Consensus 160 ~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 227 (277)
++|-.|++.|. ++..+++++. +|.+++.++..++...+.... .++.++.+|+.+.. ..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA---------GNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC---------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 57777776542 3344554555 599999988877766555432 34778888887643 00
Q ss_pred --CCceeEEecchh
Q 023787 228 --TGRYDVIWVQWC 239 (277)
Q Consensus 228 --~~~fD~Vi~~~~ 239 (277)
.+++|+|+.+..
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 356899886544
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.4 Score=37.03 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
.+.-|.+||.|.|..+..++..+..++..|+..+.++.-.+-..+.. ..+..++..|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 45679999999999999999988889999999988877665444332 23455556665443
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.29 E-value=6.8 Score=35.44 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (277)
.++.+||-.|+| .|..+..+++....++++++.++.-...+.+.+... .-++... ..+... .+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~--------~vi~~~~~~~~~~~---~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD--------SFLVSTDPEKMKAA---IGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc--------EEEcCCCHHHHHhh---cCCCCE
Confidence 356788888886 456666666665546888888765443332222210 0000000 011111 124788
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-.-. . . ..+..+.+.|++||+++..-
T Consensus 251 vid~~g-----~-~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-H--HHHHHHHHHhcCCcEEEEeC
Confidence 874322 0 1 36677888999999998763
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=18 Score=32.07 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=56.7
Q ss_pred ccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++|+=+||| -|.++..|.+.+. .|+.++-+++-++..++.- |+.-........+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 479999998 3445555554444 5999999876666555421 1100000000111 111111 112257999886
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+-=-+ +...+++.+...+.++..+++.-|
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 54222 345788899999999998877655
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.29 E-value=4.2 Score=37.31 Aligned_cols=46 Identities=11% Similarity=-0.099 Sum_probs=37.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
..++.+||-|.+|...... ++...+.+|++||+||.++...+-+..
T Consensus 33 i~~~d~vl~ItSaG~N~L~-yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALD-YLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCchHHH-HHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 6688899999887666666 466888999999999999888776553
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=6.1 Score=36.82 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=51.3
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+=+|+|. |......++....+|+.+|.++.-...+... |. + ..++.+.. ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G~---------~--v~~l~eal---~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----GF---------R--VMTMEEAA---ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----CC---------E--ecCHHHHH---hCCCEEE
Confidence 578999999984 3333333434344799999988654443221 11 1 11222211 2579998
Q ss_pred cchhhhcCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~e 269 (277)
..-. . ..++. .....+|+|++++..-
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 6532 1 13454 6778899999998763
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=80.07 E-value=21 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||-.|+| .|..+..+++.... .++++|.++.-.+.+++. ... .-++....+. ..+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT--------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc--------eEecCCCCCHHHHHHHH-hCC
Confidence 4567788888876 45566666655433 699999998888877753 210 0011111111 011 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+.+-.- . ..+..+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGGG------Q--DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCCC------H--HHHHHHHHHhhcCCEEEEec
Confidence 468988843220 1 46788888999999998653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 277 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 1e-39 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 3e-36 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 5e-65
Identities = 81/217 (37%), Positives = 116/217 (53%), Gaps = 18/217 (8%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
DLLEPV H L+ A+ LA F ++ T YD+I +QW
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDIF 277
+LTD DFV FFK + L P G+ KEN + D F
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 6e-56
Identities = 76/183 (41%), Positives = 106/183 (57%), Gaps = 9/183 (4%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ L DCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCAL---DCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
N+FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188
Query: 273 RSD 275
+
Sbjct: 189 QEG 191
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-09
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
+ YD +W C+ H+ D+ K
Sbjct: 84 ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKLIWRA 130
Query: 259 LKPGGFFVL 267
LKPGG F
Sbjct: 131 LKPGGLFYA 139
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-09
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
+ +F D+ I H+ +D F ++ P V
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+ +
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142
Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
F + R+ V+ I L + D + + L+PGG F+L
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
F L D+TP+ ++D ++ + H+ DD F +F++ +
Sbjct: 87 HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135
Query: 259 LKPGGFFVL 267
+ PGG
Sbjct: 136 VAPGGVVEF 144
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL ++ +F K +P V
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-08
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR++ H + F
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ D + R+ + + + H+ + ++ ++ GG ++
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L + +VD + + + + EN + V
Sbjct: 36 TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L + T + +YD I + L + KPGG+ ++
Sbjct: 89 LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 7e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E L +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL +F + +P V
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G T L EV L+ L AR A + + F +
Sbjct: 46 LDLACGTGIPTL-ELAERGYEVVGLDLHEEMLRVARRK-------AKERNLKIEFLQGDV 97
Query: 222 QDFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ + +D + + I + ++D F + LKPGG F+
Sbjct: 98 LEIAFK-NEFDAV-TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+VD K F+ + + LD G G +T+ L F ++
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC-IGHLTD-DDF 248
L A + C + + ++D+I ++ D DD
Sbjct: 70 EMLSEAENKFRSQGLKP-------RLACQDISNL-NINRKFDLITCCLDSTNYIIDSDDL 121
Query: 249 VSFFKRAKVGLKPGGFFVL 267
+FK LK GG F+
Sbjct: 122 KKYFKAVSNHLKEGGVFIF 140
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMH 211
L G G G I +L +++EP + + +E +A +++ H
Sbjct: 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWH 116
Query: 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271
K T+ E ++D I + + ++ D + K L ++
Sbjct: 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVS 174
Query: 272 ARSDIF 277
S
Sbjct: 175 GSSGWD 180
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
D + + L+ R P A + LD G G ++ + + LE
Sbjct: 21 KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74
Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVS 250
L AR+ L DM +DF ++ + + +G+L T ++ +
Sbjct: 75 LTHARKRLPDATLHQGDM-----------RDFRLG-RKFSAVVSMFSSVGYLKTTEELGA 122
Query: 251 FFKRAKVGLKPGGFFVL 267
L+PGG V+
Sbjct: 123 AVASFAEHLEPGGVVVV 139
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + Y + + V D S+A N + +
Sbjct: 124 VLDLGCGQGRNS-----LYLSLLGY--DV-TSWDHNENSIAFLNETKEKENLNISTALYD 175
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + YD I L + S K K GG+ ++
Sbjct: 176 INAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 22/217 (10%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + ++ L G G + L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236
R EV +E + + ++ L N + + + E R+D+I
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDII-- 302
Query: 237 QWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
+G D +F A L+PGG F L
Sbjct: 303 -VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 13/165 (7%)
Query: 114 EGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK 173
++ D V G + I + F + + N + LD G+G G ++
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSV-SIASVDTENPDI--LDLGAGTGLLSA 60
Query: 174 NLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232
L+ +Y L++ L+ A+ + + + E +YD
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV--------KYIEADYSKYDFE-EKYD 111
Query: 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDIF 277
++ I HL D+D +KR+ LK G F+ + + F
Sbjct: 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF 156
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
D A L L+ P A + LD G G ++L + V+ LE + L
Sbjct: 32 DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85
Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVSF 251
AR DM +DF+ R+ + + IGHL + +
Sbjct: 86 AIARRRNPDAVLHHGDM-----------RDFSLG-RRFSAVTCMFSSIGHLAGQAELDAA 133
Query: 252 FKRAKVGLKPGGFFVL 267
+R + P G V+
Sbjct: 134 LERFAAHVLPDGVVVV 149
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L G GR L + EV +D + LA +A +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-EV-------TAVDQSSVGLAKAKQLAQEKGVKITTVQSN 84
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L DF ++ I +C HL + + GLKPGG F+L
Sbjct: 85 LADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T LL ++ EV ++ L+ A+E A + ++ +F+ +
Sbjct: 38 ADIGCGTGTATL-LLADHY-EVTGVDLSEEMLEIAQEK-------AMETNRHVDFWVQDM 88
Query: 222 QDFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 267
++ + + + +L T+ D F A L GG +
Sbjct: 89 RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L ++ ++ F++ E A + + A +
Sbjct: 51 ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADR----VKGITGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + D+IW + I ++ + ++ + + LK GGF + E
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKY---LKKGGFIAVSE 150
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LDCG+G ++ + + +E L A + EN+ ++ K + +P
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKG-DIRKLPF 85
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D ++ I H+ +D K LKPGG +
Sbjct: 86 KD-----ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G GRI L + +V + +D A++ + L
Sbjct: 51 LDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQD-----------FPEARWVVGDL 98
Query: 222 QDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D+I +G L +D L G V+
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L +V L+ +S F+D A ++ + + +
Sbjct: 51 ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVT----GIVGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D D+IW + I ++ + ++ +++ LK GG+ + E
Sbjct: 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY---LKKGGYLAVSE 150
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 6e-05
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G GIG T L + E+ ++ L+ ARE+ +A N F +P
Sbjct: 42 LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA-NIFSLP 100
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSDIF 277
+D +D I+V + + HL ++ + K+ LKPGG + E S F
Sbjct: 101 FED-----SSFDHIFVCFVLEHLQSPEEALKSLKKV---LKPGGTITVIEGDHGSCYF 150
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-05
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE 182
V + ++N + + L+ LL LD G+G + LL Y E
Sbjct: 9 VFPTYTDINSQEYRSRIETLEPLLMKYMKKRGK-----VLDLACGVGGFSF-LLEDYGFE 62
Query: 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH 242
V ++ + ARE A F + + E +D + I H
Sbjct: 63 VVGVDISEDMIRKAREY-------AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
Query: 243 LTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
+ FK + LKP G F++ R
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLR 146
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNL--LIRYFNEVDLLEPVSHFLDAARESLAPE 203
+ + + +D G G G T + ++ F ++ + + + A
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG- 83
Query: 204 NHMAPDMHKATNFFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
+PD +K +F DF + + D+I C H D + F + A
Sbjct: 84 ---SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFE--KFQRSAYA 137
Query: 258 GLKPGGFFVL 267
L+ G +
Sbjct: 138 NLRKDGTIAI 147
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD GSG+G + +Y ++ S+ ++ A E N+ +A +
Sbjct: 60 LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE-RVSGNNKII--FEANDILTKEF 116
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ +D+I+ + I L+ ++ F++ LKP G ++
Sbjct: 117 PE-----NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLI 157
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
AL G G G + V L+ L A E + A F
Sbjct: 70 ALVPGCGGGHDVVAMASPERF-VVGLDISESALAKANE-TYGSSPKAEYFS----FVKED 123
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ + P +D+I+ + + ++ K LKP G +
Sbjct: 124 VFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT 169
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G G T+ L + + +++ + + A + +H+ ++
Sbjct: 55 GLEIGCAAGAFTE-KLAPHCKRLTVIDVMPRAIGRACQRTKRWSHI--------SWAATD 105
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267
+ F+ +D+I V + +L D + L PGG V
Sbjct: 106 ILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G G +T LL+ V +EP A+E L E F +
Sbjct: 50 LEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE-------------FSITE 95
Query: 222 QDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
DF D I + HLTDD+ + L GG V
Sbjct: 96 GDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVF 143
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G TK L ++F V L+ L+ A + +++ +
Sbjct: 60 LIDFACGNGTQTK-FLSQFFPRVIGLDVSKSALEIAAKE-NTAANISYRLLDGLVP--EQ 115
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
E G ++ H+ + + ++ L G L E
Sbjct: 116 AAQIHSEIGDANIYMRT-GFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 2e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G E ++ ++ AR +A + + +
Sbjct: 69 LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128
Query: 222 QDFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVL 267
+DVI Q+ + T + + L+PGG+F++
Sbjct: 129 DLGKE----FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVP 220
LD G G + L+ F V ++ L A + +
Sbjct: 62 LDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120
Query: 221 LQDFTPETGRYDVIWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
L P +D + HL D + K ++PGG V+
Sbjct: 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%)
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+ EG + ++ F +DI G+ F+Q L + +D
Sbjct: 179 DAPQTVSWKLEGTDWTIHNHANVFSR-TGLDI-GARFFMQHLPENLEGEI--------VD 228
Query: 164 CGSGIGRITKNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPL 221
G G G I LL + +V ++ S + ++R ++ +M + + L
Sbjct: 229 LGCGNGVIGLTLLDKNPQAKVVFVD-ESPMAVASSRLNVE--TNMPEALDRCEFMINNAL 285
Query: 222 QDFTPETGRYDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
P R++ + C H D+ F A+ LK G +
Sbjct: 286 SGVEPF--RFNAVL---CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 162 LDCGSGIGRITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+D G G +L R+ ++ L DAAR+++ +
Sbjct: 184 IDLAGGHGTYLAQVLRRHPQLTGQIWD----LPTT---RDAARKTIHAHDLGGRVEFFEK 236
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
N E G DV+ + C+ + + A +KPGG ++
Sbjct: 237 NLL----DARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292
Query: 275 D 275
D
Sbjct: 293 D 293
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 277 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.94 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.83 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.81 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.81 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.81 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.81 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.8 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.8 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.8 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.79 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.79 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.79 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.79 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.79 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.78 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.78 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.78 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.77 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.77 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.77 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.76 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.76 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.76 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.75 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.75 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.75 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.75 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.74 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.74 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.73 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.73 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.73 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.73 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.73 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.73 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.73 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.72 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.72 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.72 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.71 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.69 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.69 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.69 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.68 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.68 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.67 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.67 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.67 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.67 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.66 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.66 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.66 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.66 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.65 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.65 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.65 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.65 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.65 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.64 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.64 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.64 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.64 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.64 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.64 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.64 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.64 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.63 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.63 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.63 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.63 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.62 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.61 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.61 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.61 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.61 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.6 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.6 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.6 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.59 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.59 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.59 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.59 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.58 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.58 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.58 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.57 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.57 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.57 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.57 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.57 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.57 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.57 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.57 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.57 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.56 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.56 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.56 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.56 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.55 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.55 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.54 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.54 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.54 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.53 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.53 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.53 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.53 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.52 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.52 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.52 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.52 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.52 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.52 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.51 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.5 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.5 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.5 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.5 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.5 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.49 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.49 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.49 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.48 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.48 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.48 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.48 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.47 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.47 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.46 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.46 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.46 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.46 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.46 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.46 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.46 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.45 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.45 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.45 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.45 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.44 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.44 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.43 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.42 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.41 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.41 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.41 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.4 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.4 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.4 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.4 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.4 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.4 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.4 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.38 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.37 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.37 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.37 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.36 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.34 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.32 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.32 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.31 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.3 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.29 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.28 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.27 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.24 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.24 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.2 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.19 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.18 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.17 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.14 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.14 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.12 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.11 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.08 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.08 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.08 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.07 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.05 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.02 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.99 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.97 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.96 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.95 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.95 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.95 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.92 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.87 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.86 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.85 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.8 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.79 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.79 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.77 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.77 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.76 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.74 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.72 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.72 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.65 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.64 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.56 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.56 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.56 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.55 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.47 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.47 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.44 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.36 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.34 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.29 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.28 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.08 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.06 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.06 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.93 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.86 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.78 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.62 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.6 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.58 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.27 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.04 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.98 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.95 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.93 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.84 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.78 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.71 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.64 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.45 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.42 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.33 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.15 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.14 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.04 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.95 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.81 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.54 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.52 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.5 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.49 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.46 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.32 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.24 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.18 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.18 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.15 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.07 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.03 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.87 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.84 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.8 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.7 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.69 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.66 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.63 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.53 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.53 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.53 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.46 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.44 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.4 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.3 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.29 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.23 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.14 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.09 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.09 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.05 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.9 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.77 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.76 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.76 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.76 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.72 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.68 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.56 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.53 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.49 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.49 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.42 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.36 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.28 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.0 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 92.91 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.88 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.86 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.7 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.54 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.37 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.94 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.82 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.67 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.33 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.91 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.8 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.7 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.6 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 90.55 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.55 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.49 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.02 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.99 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.84 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.73 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.6 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.56 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.54 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.52 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.35 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.14 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.45 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 88.4 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.27 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 88.09 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 88.09 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.06 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 87.72 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 87.51 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 85.38 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.56 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 84.56 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 84.07 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 84.02 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.91 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.88 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 83.58 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 83.24 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 83.16 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 83.03 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 82.58 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 82.34 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 81.62 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 81.59 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 81.45 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.87 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 80.65 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 80.54 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 80.5 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 80.46 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 80.4 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 80.29 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=196.40 Aligned_cols=189 Identities=41% Similarity=0.790 Sum_probs=153.1
Q ss_pred cccccccCCCCCCCccccHHHHHHHHhCCCCcchhhhhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHH
Q 023787 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (277)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (277)
|..++..|.+++|+.|.+.+++|++.+...... ....||....+||+.....++++++++........... ..+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 85 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD--PEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGS----RNF 85 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTTC--TTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHH----HHH
T ss_pred cccccccccCCCCcccccHHHHHHHHHhccccc--cchhhhhhhhhHHhcCCccccceecCcCccCHHHHHHH----HHH
Confidence 555678899999999999999999987653332 22358988999999998888888877765443333322 222
Q ss_pred HhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC
Q 023787 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (277)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (277)
+.. +. ..++.+|||||||+|.++..++..+..+|+++|+|+.|++.|++++.. ..++++.+.|+.+++
T Consensus 86 l~~-l~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 86 IAS-LP---GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp HHT-ST---TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred HHh-hc---ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence 222 22 346789999999999999999888766799999999999999999865 256899999999888
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++++||+|++..+++|+++++...+++++.++|||||++++.+++.
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 200 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 77789999999999999987789999999999999999999998753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-24 Score=179.69 Aligned_cols=163 Identities=45% Similarity=0.912 Sum_probs=130.9
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC
Q 023787 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (277)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (277)
...||+...+||+.....++.++++|..+...+......++..++..... ..++.+|||||||+|.++..++..+..
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred cchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 44688888999999998888888777655554445555555554432211 235789999999999999988877766
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCC
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (277)
+|+++|+|+.|++.|++++...+ ..++++++.|+.++++++++||+|++..+++|++++++..+++++.++|||
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 177 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 177 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999986532 146889999998888777799999999999999977788999999999999
Q ss_pred CcEEEEEecCCC
Q 023787 262 GGFFVLKENIAR 273 (277)
Q Consensus 262 GG~lii~e~~~~ 273 (277)
||++++.+++..
T Consensus 178 gG~l~i~~~~~~ 189 (241)
T 2ex4_A 178 NGIIVIKDNMAQ 189 (241)
T ss_dssp EEEEEEEEEEBS
T ss_pred CeEEEEEEccCC
Confidence 999999987543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=168.98 Aligned_cols=111 Identities=14% Similarity=0.278 Sum_probs=97.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+++.+|||||||+|..+..+++.... +|+|+|+|+.|++.|++++...+. ..+++++++|+.+++++ +||
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~~d 141 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NAS 141 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTTCCCC--SEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccccccc--ccc
Confidence 47889999999999999998876432 799999999999999999876544 45799999999998764 599
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|+++.++||+++++...+|++++++|||||+|+++|....
T Consensus 142 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 142 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 99999999999988888999999999999999999987654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=158.87 Aligned_cols=110 Identities=22% Similarity=0.389 Sum_probs=97.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++...+ .+|+++|+|+.|++.|++++... .+++++++|+.+++++ ++||+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD~ 112 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYDM 112 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCceE
Confidence 44678999999999999999998863 37999999999999999998763 3799999999998877 89999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++..+++|+++++...+++++.++|||||++++.+....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 9999999999977777899999999999999999986543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=156.94 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=91.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC----C--CCCCcceeEEEcCCCCCCCCC-
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----A--PDMHKATNFFCVPLQDFTPET- 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~----~--~~~~~~~~~~~~d~~~~~~~~- 228 (277)
.++.+|||+|||+|..+..+++.++ +|+|+|+|+.|++.|+++....... + .....+++++++|+.++++++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 4678999999999999999998876 6999999999999999986531000 0 000246899999999988664
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++||+|++..+++|++.++...++++++++|||||++++.
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7899999999999999888888999999999999984443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-20 Score=152.62 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=92.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.+++++. .++++.++|+.+++++ ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEE
Confidence 3678999999999999999987755 69999999999999999875 2478899999998877 8999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+..+++|+++.+...+++++.++|||||.+++.+...
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 9999999997665669999999999999999997543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=160.59 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=92.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC-------CCCCC----CCCcceeEEEcCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAP----DMHKATNFFCVPLQDF 224 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~-------~~~~~----~~~~~~~~~~~d~~~~ 224 (277)
.++.+|||+|||+|..+..|++.++ +|+|||+|+.|++.|+++.... ...+. ....+++|+++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 3668999999999999999998877 5999999999999998876410 00000 0025689999999998
Q ss_pred CCCC-CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 225 TPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 225 ~~~~-~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++++ ++||+|++..+++++++++...+++++.++|||||++++.
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8653 7999999999999999888889999999999999999754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=152.06 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=93.3
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++. .++.++++|+.++++++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 67999999999999999988766 6999999999999999984 34889999999988777899999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.+++|++.++...+++++.++|||||++++.+...
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 99999987788999999999999999999987544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-20 Score=159.49 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=98.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....++ ..++++.++|+.++++++++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCcccCCCCCCCEeEE
Confidence 457789999999999999999887444799999999999999998765443 357899999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++ +...+++++.++|||||++++.+....
T Consensus 155 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 155 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999999 577999999999999999999986543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=156.54 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=95.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++ ..++++...|+.+++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCC---CCeeEE
Confidence 557789999999999999999855445899999999999999999876544 357899999998765 789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+++|+++++...+++++.++|||||++++.+...
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999999976688899999999999999999987653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=155.16 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=98.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..+++....+|+++|+|+.+++.+++++...++ ..++.+.++|+.++++++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECccccCCCCCCCccEE
Confidence 457789999999999999999877656899999999999999999876544 346899999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+++|++ +...+++++.++|||||++++.+...
T Consensus 134 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 134 WALESLHHMP--DRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp EEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 9999999998 56799999999999999999998653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-20 Score=160.94 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=86.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
...+|||||||+|..+..++..+. +|+|+|+|+.|++.|++ ..++.+.+++++++++++++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhcccCCcccEEEE
Confidence 457899999999999998886654 69999999999987753 25689999999999999999999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
..++||++ ...++++++|+|||||+|++..+
T Consensus 106 ~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 106 AQAMHWFD---LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeehhHhh---HHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999986 34799999999999999998765
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=155.28 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..++..+. +|+++|+|+.|++.|++++...+. .++.+.++|+.++++++++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHHhCCCCCCCEEEE
Confidence 34678999999999999998887765 799999999999999998765433 46899999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++.+++|++ +...+++++.++|||||++++.+...
T Consensus 108 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 108 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 9999999998 66799999999999999999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=154.06 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=99.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|+++... ..++++.+.|+.++++++++||+|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccCCCCCCcEEEE
Confidence 567789999999999999999987544799999999999999998765 257899999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++.++...+++++.++|||||++++.+....
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999999999777899999999999999999999986543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=148.53 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...++... ...++++.++|+...+.+.++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceEEEeCCcccccccCCCcCEE
Confidence 3567999999999999999987765 3899999999999999999876544100 0126999999998777666799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|+++++...+++++.++|||||++++..+
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 999999999988888999999999999998888765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=153.94 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=92.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++.. ..+++++++|+.++++++++||+|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCCCCCCCccEEEE
Confidence 667999999999999999988755 69999999999999998753 35789999999999887889999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|++ +...+++++.++|+|||++++.+..
T Consensus 123 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 123 INSLEWTE--EPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp ESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 99999998 6679999999999999999998753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=155.82 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..++++.++|+.++ +++||+|
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGGC---CCCCSEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHHc---CCCccEE
Confidence 467789999999999999999988446799999999999999999876554 34789999999876 5799999
Q ss_pred ecchhhhcCC-------hhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++ .+++..+++++.++|||||++++.+....
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999999994 35678999999999999999999876543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=151.81 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=94.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..+++.++.+|+++|+|+.|++.|+++... .++.+.++|+.++++++++||+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------PVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------TTEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------CCeEEEEcchhhCCCCCCCeEEE
Confidence 446789999999999999999988776899999999999999998762 56899999999988878899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..+++|++ +...+++++.++|||||++++..
T Consensus 113 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 113 LSSLALHYIA--SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999997 77799999999999999999974
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=155.60 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=96.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..++++.+.|+.+++ ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHHCC---CCcCEE
Confidence 557789999999999999999877333799999999999999999876554 356899999998764 689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|+++++...+++++.++|||||++++.+....
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999999999877889999999999999999999876543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=147.07 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=93.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++. . ..+++++++|+.++ +++++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~--~--------~~~~~~~~~d~~~~-~~~~~~D~v~ 112 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRH--G--------LDNVEFRQQDLFDW-TPDRQWDAVF 112 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGG--C--------CTTEEEEECCTTSC-CCSSCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhc--C--------CCCeEEEecccccC-CCCCceeEEE
Confidence 4567999999999999999988855 699999999999999882 1 25689999999988 6678999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+..+++|+++++...+++++.++|||||++++.+...+
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 99999999977778999999999999999999987553
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-19 Score=147.90 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=96.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|++++...++.... ..++++.++|+...+.++++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ-RKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHH-HTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccccc-CcceEEEeCcccccccccCCCCEE
Confidence 3567999999999999998887665 48999999999999999998764331000 016899999998777667899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|++++++..+++++.++|||||++++..+.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 9999999999887889999999999999988877653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=151.88 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=96.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+++|+|+.|++.|+++....++ ..++++.++|+.++++ +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChHhCCc-CCCCCEE
Confidence 457789999999999999999887655799999999999999999876544 3579999999999877 6899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|++ +...++++++++|||||++++.+..
T Consensus 108 ~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 108 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999999998 6679999999999999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=150.85 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..+++.++.+|+|+|+|+.+++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 118 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----ADRVKGITGSMDNLPFQNEELDLI 118 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCCCCCCEEEE
Confidence 456789999999999999999988776899999999999999999877654 346999999999988888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++ ...+++++.++|||||++++.+.
T Consensus 119 ~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 119 WSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp EEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999983 55899999999999999999975
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=144.65 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=95.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..++.+|+++|+|+.+++.++++... ..++.+.+.|+.++++++++||+|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcCCCCCCcccEEE
Confidence 36789999999999999999988775799999999999999999764 2568999999999887778999999
Q ss_pred cchhhhcCC-------------hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~-------------~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+..+++++. ..+...+++++.++|||||++++.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 999998765 4467899999999999999999987643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=148.09 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=93.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|++++.. ..++++++.|+.+++ ++++||+|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~-~~~~fD~v 118 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFS-TAELFDLI 118 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCC-CSCCEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCC-CCCCccEE
Confidence 45678999999999999998887764 699999999999999999876 247999999999988 56899999
Q ss_pred ecchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++.+++|+++ +++..+++++.++|||||++++...
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999999984 4567899999999999999999753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=148.79 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=94.8
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
.+|||+|||+|..+..+++....+|+++|+|+.+++.|++++...+. ..++++.+.|+.++++++++||+|++..
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHHCCCCcccccEEEECc
Confidence 39999999999999999887333799999999999999999876544 3579999999999888888999999999
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++|++ +...+++++.++|||||++++.+...
T Consensus 120 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 120 SVFFWE--DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp CGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999997 77799999999999999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-19 Score=153.03 Aligned_cols=120 Identities=26% Similarity=0.308 Sum_probs=101.0
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
..+...+..... ..++.+|||||||+|.++..++..++ .+|+++|+|+.+++.+++++...+. .++.+.+
T Consensus 23 ~~l~~~l~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 93 (276)
T 3mgg_A 23 ETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQ 93 (276)
T ss_dssp CHHHHHHHTTCC---CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred HHHHHHHhhccc---CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEE
Confidence 344444443332 45788999999999999999998864 3899999999999999999866443 4689999
Q ss_pred cCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 219 ~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|+.++++++++||+|++..+++|++ +...+++++.++|||||++++.+.
T Consensus 94 ~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 94 ANIFSLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp CCGGGCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999888888999999999999998 556999999999999999999874
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=150.42 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=97.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+. .++.+.++|+.++++++++||+|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC------CCeEEEecccccCCCCCCcEEEE
Confidence 56788999999999999998887765 799999999999999998765432 46899999999988888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++ +...+++++.++|||||++++.+...+
T Consensus 92 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 92 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 9999999998 677999999999999999999987543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=149.95 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=96.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMDDLPFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChhhCCCCCCCEEEE
Confidence 457789999999999999998877444899999999999999999876554 356999999999988878899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 119 WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 9999999983 458999999999999999998754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=148.59 Aligned_cols=101 Identities=23% Similarity=0.273 Sum_probs=89.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... +++++++|+.++ +++++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~~-~~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----------GITYIHSRFEDA-QLPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGC-CCSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHHc-CcCCcccEEEE
Confidence 567899999999999998887766 699999999999999998642 588999999887 45689999999
Q ss_pred chhhhcCChhhHHHHHHHHH-hcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~-r~LkpGG~lii~e~~ 271 (277)
..+++|++ +...+++++. ++|||||++++.+..
T Consensus 110 ~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 110 THVLEHID--DPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999998 5679999999 999999999998754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=148.29 Aligned_cols=108 Identities=18% Similarity=0.068 Sum_probs=93.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. ..+++++++|+.+++.. ++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFTWRPT-ELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTTCCCS-SCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhcCCCC-CCeeEEEE
Confidence 346999999999999998875544 699999999999999999876332 35799999999997744 59999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|+++++...+++++.++|||||++++.+..
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 99999999888999999999999999999998653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=144.63 Aligned_cols=102 Identities=23% Similarity=0.406 Sum_probs=90.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++. ++.+.++|+.+++ .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcEEEEE
Confidence 3578999999999999999987755 6999999999999999986 2456778888877 568999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..+++|+++++...+++++.++|||||++++....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 999999999888999999999999999999998554
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=143.02 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=95.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|..+..++..+. +|+++|+|+.+++.+++++...+. .++++.+.|+.++++ +++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~~D~v~ 102 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNNLTF-DRQYDFIL 102 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGGCCC-CCCEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhhCCC-CCCceEEE
Confidence 3567999999999999999987755 699999999999999998765332 358999999998877 68999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+..+++|+++++...+++++.++|||||++++.+...
T Consensus 103 ~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 9999999998888999999999999999998876544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=144.53 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=97.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++..+ + .+|+++|+|+.+++.+++++...++ .++.+.+.|+.++++++++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD 108 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEENKIPLPDNTVD 108 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTTBCSSCSSCEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccccCCCCCCCee
Confidence 4567899999999999999998876 2 3799999999999999999865433 368999999999888888999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|++..+++|++ +...+++++.++|||||++++.+....
T Consensus 109 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 109 FIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 999999999998 667999999999999999999976543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-19 Score=153.41 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=93.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...++ ..+++++++|+.+++ +.+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHHhhhhcCCCceEEE
Confidence 467999999999999999987755 699999999999999999877554 367999999999887 6678999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|++ +...+++++.++|||||++++.+.
T Consensus 142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999998 667999999999999999999864
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=142.40 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+ +..+++++|+|+.|++.++++. .++.+.+.|+.++++++++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 6789999999999999866 4437999999999999999986 2478899999998888789999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
..+++|++ +...+++++.++|||||.+++.+...
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 102 FTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp ESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999998 67799999999999999999987543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=147.19 Aligned_cols=109 Identities=17% Similarity=0.031 Sum_probs=94.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-----C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 229 (277)
..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++... .+++++++|+.+++... .
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---------cCceEEECccccccccccccccc
Confidence 34678999999999999999998877 699999999999999998743 46899999998865321 2
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+||+|++..++||+++++...+++++.++|||||++++.+....
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 49999999999999988889999999999999999999987543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=143.25 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=93.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|..+..++.....+|+++|+|+.|++.++++.... ..++.+.+.|+.++++++++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEEE
Confidence 456899999999999744344443347999999999999999987542 2357889999999888778999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+..+++|++.++...+++++.++|||||++++.+....
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 99999999877899999999999999999999876543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=151.27 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=87.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||||||+|..+..+++..+.+|++||+|+.|++.|+++.... ..++.++.++..+. .+++++||.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhcccccccCCce
Confidence 478899999999999999888766668999999999999999998764 34677888876654 356688999
Q ss_pred Ee-----cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi-----~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+ +...++|++ +...++++++|+|||||+|++.+
T Consensus 132 i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEe
Confidence 97 356667766 77799999999999999998864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=146.78 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=91.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. ++.++++|+.++++ +++||+|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----------DAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----------CCEEEECChHHCCc-cCCcCEEEE
Confidence 568999999999999998887765 69999999999999999853 47899999999877 579999999
Q ss_pred ch-hhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 237 QW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 237 ~~-~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
.. +++|+++ ++...+++++.++|||||++++.+...++
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 98 9999964 57789999999999999999997654433
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=146.50 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=92.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|..+..++..+..+|+++|+|+.|++.++++... .++++.+.|+.++++++++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCceEEE
Confidence 46789999999999999999887664799999999999999998754 358899999998887778999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|++ +...+++++.++|||||++++.+.
T Consensus 113 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 113 SSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999998 677999999999999999999763
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=151.91 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=97.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhcCCCCCCCEeEE
Confidence 456789999999999999999887444799999999999999999877554 357999999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++ ...+++++.++|||||++++.+.+..
T Consensus 190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 9999999995 66899999999999999999876543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=141.74 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=93.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..++..++ +++++|+|+.+++.|+++.... ..+++++++|+.++++++++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEECchhcCCCCCCcEEEEEE
Confidence 478999999999999998887766 7999999999999999987543 24688999999998877789999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+.++++....+...+++++.++|||||++++.+..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99976666668889999999999999999998653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=149.61 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=95.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|++++...+. ..++.++++|+.+.++ ++++||+|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCccccccCCCCCcCEE
Confidence 46789999999999999988877665899999999999999999876443 3568999999998876 56899999
Q ss_pred ecchhhhc--CChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGH--LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~--~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..++|| ...++...+++++.++|||||++++...
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999998 5566788999999999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-19 Score=148.68 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||||||+|..+..++...+.+|+++|+|+.|++.|+++.... ..++.++++|+.++ ++++++||+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEecCHHHhhcccCCCceEE
Confidence 467899999999999999886555558999999999999999988653 24689999999887 677789999
Q ss_pred Eec-chhh--hcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWV-QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~-~~~l--~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++ .+.+ +.....+...++++++++|||||+|++.+
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 999 5543 23333456688999999999999999875
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=146.78 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... ..++++.+.|+.+++++ ++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD 91 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 91 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcchhhcCcC-CCee
Confidence 45778999999999999999887754 37999999999999999998653 23799999999998875 6999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++..+++|++ +...++++++++|||||++++.+..
T Consensus 92 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 92 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999998 6679999999999999999998764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=145.10 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=88.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++ +++.+.|+.++ ++++++||+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBSE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCeeE
Confidence 4678999999999999999988766 599999999999999865 46677777765 566789999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|++..+++|++++++..+++++.++|||||++++....
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999999888899999999999999999998654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=148.56 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=92.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.+++++... ..++.+.++|+.++++++++||+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGV-------DRKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTS-------CTTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhcc-------CCceEEEEcccccCCCCCCCeeEE
Confidence 4567899999999999999888764 46999999999999999997221 357999999999988878899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..++||++ +...+++++.++|||||++++.
T Consensus 109 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCchhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999998 6779999999999999999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=147.03 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=85.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++++. +|+++|+|+.|++.|+++.... ....++...+.......+++||+|
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence 45778999999999999999998765 6999999999999999998653 122333222221011114689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++.++||++.++...+++++.++| |||+++++..
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999888899999999999 9999999854
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=147.37 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=94.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...+ .++++.++|+.+++. +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN-------LNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC-------CceEEEEeccccccc-cCCccEEEE
Confidence 568999999999999999998866 69999999999999999987642 268999999998776 579999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+.+++|+++++...+++++.++|||||++++.....
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999998889999999999999999988875543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=139.37 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....++.... ..++++.+.|+.++++++++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKT-GGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSS-SCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCcccc-CcceEEEEecccccCCCCCceeEEEE
Confidence 678999999999999999988755 6999999999999999998775442111 24689999999998887889999999
Q ss_pred chhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
..+++|+++ .+...+++++.++|||||++++.+...
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999999973 335589999999999999999987643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=143.47 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=90.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++.+. +|+++|+|+.|++.|+++.. ++.+.+.|+.++++ +++||+|+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----------DATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHHccc-CCCCcEEEE
Confidence 567999999999999999988876 69999999999999998852 47889999998876 579999995
Q ss_pred -chhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 237 -QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 237 -~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
..+++|+++ ++...+++++.++|||||++++.+...+
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 459999953 5788999999999999999999875544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=143.61 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=90.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++. .++.+.++|+.+++ ++++||+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD~ 98 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKADL 98 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcCE
Confidence 4567899999999999999998874 237999999999999999883 35889999999887 6689999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+++.+++|++ +...+++++.++|||||++++.+.
T Consensus 99 v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 99 LYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999998 677999999999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=155.69 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=94.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCC-----C-CCCCCCCcceeEEEcCCCCC--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPE-----N-HMAPDMHKATNFFCVPLQDF-- 224 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~-----~-~~~~~~~~~~~~~~~d~~~~-- 224 (277)
..++.+|||||||+|.++..++... . .+|+|+|+|+.|++.|++++... | + ...+++|+++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~----~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP----SRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSST----TCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccccc----CCCceEEEEccHHHhhh
Confidence 3467899999999999999888764 2 28999999999999999986421 1 0 025799999999987
Q ss_pred ----CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 225 ----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 225 ----~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++++++||+|+++.+++|++ +...++++++++|||||+|++.+...
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 77788999999999999998 67799999999999999999987543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=145.62 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++. +++|.+.|+.++++++++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------------QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------------TEEEECCCTTSCCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------------CCEEEECchhhCCCCCCCEeEE
Confidence 35678999999999999999887544 7999999999999776542 6899999999998888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|++ +...++++++++|| ||++++.+..
T Consensus 99 ~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 99 ISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999997 77799999999999 9988888754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=145.64 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=91.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcCCCCCCCCC----
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPET---- 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~---- 228 (277)
.++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|++++... +. ..+++++++|+.++++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCccccccc
Confidence 367899999999999999998743 448999999999999999987653 11 357999999999988766
Q ss_pred --CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 --GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 --~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++||+|+++.++||+ +...+++++.++|||||.|++.
T Consensus 110 ~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 110 DKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence 799999999999999 5669999999999999999984
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-18 Score=150.09 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=85.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC------C--CCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD------F--TPET 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~------~--~~~~ 228 (277)
++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+........+++|.+.|+.. + ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4689999999999866666666656799999999999999998754321000000136677887722 2 2345
Q ss_pred CceeEEecchhhhcC-ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||+|+|..++||+ ..++...++++++++|||||+|+++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 799999999999986 334677999999999999999998754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=147.03 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=98.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
...+|||||||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+.+. +++ ++||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEccccccCCCCC-CCcCE
Confidence 5679999999999999999987765 8999999 9999999999887554 46799999999886 344 68999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++..++|++++++...++++++++|||||++++.|.+.++
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 99999999999888889999999999999999999976543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=147.28 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=92.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (277)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+.. ....++.+..+|+.+++ +++++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecChhhCccccccCCCeE
Confidence 3568999999999999999998866 6999999999999999876321110 00245778888888776 6678999
Q ss_pred EEecc-hhhhcCCh-----hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~-~~l~~~~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++. .+++|+++ ++...++++++++|||||++++...
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998 89999996 5588999999999999999998753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=145.91 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=90.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCC-----------------------------
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------------------------- 206 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~----------------------------- 206 (277)
++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999998753 48999999999999999987653211
Q ss_pred -----------------------CCCCCcceeEEEcCCCCCC-----CCCCceeEEecchhhhcC----ChhhHHHHHHH
Q 023787 207 -----------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFKR 254 (277)
Q Consensus 207 -----------------------~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Vi~~~~l~~~----~~~d~~~~l~~ 254 (277)
......++.|.++|+.... +.+++||+|+|..+++|+ +++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0011247999999998654 456899999999999887 56678899999
Q ss_pred HHhcCCCCcEEEEEe
Q 023787 255 AKVGLKPGGFFVLKE 269 (277)
Q Consensus 255 ~~r~LkpGG~lii~e 269 (277)
++++|||||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999863
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=146.93 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=89.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC-CC------------C----------CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-AP------------D----------MH 211 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-~~------------~----------~~ 211 (277)
..++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|++++...... .. . ..
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4467899999999998877666666667999999999999999886542100 00 0 00
Q ss_pred ccee-EEEcCCCCC-CC---CCCceeEEecchhhhcCC--hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 212 KATN-FFCVPLQDF-TP---ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 212 ~~~~-~~~~d~~~~-~~---~~~~fD~Vi~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.++. +.++|+.+. ++ ..++||+|++++++||+. .+++..++++++++|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1233 888998874 32 246899999999999863 3577899999999999999999997543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=145.74 Aligned_cols=112 Identities=16% Similarity=0.035 Sum_probs=94.6
Q ss_pred CCCCccEEEeeccccHHHHHHH-HhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLL-IRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~-~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..++ ...+ .+|+++|+|+.+++.|++++...+. ..+++++++|+.+++++ ++||
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD 189 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWKLDTR-EGYD 189 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGGCCCC-SCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhcCCcc-CCeE
Confidence 3467899999999999999874 2332 3899999999999999999987655 45699999999998877 8999
Q ss_pred EEecchhhhcCChh-hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 233 VIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|+++.+++|+++. ....+++++.++|||||++++.+...
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 99999999999733 34458999999999999999987554
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=134.70 Aligned_cols=105 Identities=24% Similarity=0.240 Sum_probs=89.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++ +|||+|||+|..+..++..+. +|+++|+|+.|++.|+++....+ .++.+.+.|+.++++++++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG-------VKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHT-------CCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcChhhcCCCcCCccEEEE
Confidence 44 999999999999998887655 79999999999999999876431 2588999999988877789999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+ +.|++.++...+++++.++|||||++++.+...
T Consensus 101 ~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 I--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp E--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred E--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 5 356676788899999999999999999987543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=142.97 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=89.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++. .++.+.++|+.++++ +++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCC-SSCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCc-CCCcCEE
Confidence 34678999999999999999887443 7999999999999999875 247889999999887 4799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|++ +...+++++.++|||||++++....
T Consensus 122 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 122 FSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999998 6779999999999999999998654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=134.67 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
..+...++... ..++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.|++++...++ .++++++
T Consensus 9 ~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~ 76 (185)
T 3mti_A 9 IHMSHDFLAEV-----LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELIL 76 (185)
T ss_dssp HHHHHHHHHTT-----CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEE
T ss_pred HHHHHHHHHHh-----CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEe
Confidence 34444445433 336789999999999999998876 45799999999999999999875433 4688888
Q ss_pred cCCCCCC-CCCCceeEEecchhhhcC-------ChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 219 VPLQDFT-PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 219 ~d~~~~~-~~~~~fD~Vi~~~~l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+..++. +.+++||+|+++....+. ...+...+++++.++|||||++++....
T Consensus 77 ~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 77 DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp SCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 7777643 335789999987432221 2245678899999999999999997653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=147.25 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=82.5
Q ss_pred CCCccEEEeeccccHHHHHH----HHhCCC-c--EEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcCCCCCC--
Q 023787 156 NQHLVALDCGSGIGRITKNL----LIRYFN-E--VDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFT-- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l----~~~~~~-~--v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~-- 225 (277)
.++.+|||||||+|.++..+ +..++. . ++++|+|+.|++.|++++... ++. ..+..+...+..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~----~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE----NVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT----TEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC----cceEEEEecchhhhhhh
Confidence 46679999999999876543 333332 2 399999999999999987542 110 112344455554432
Q ss_pred ----CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++++||+|++..++||++ |+..++++++++|||||++++.+..
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4568999999999999999 6779999999999999999998654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=143.12 Aligned_cols=110 Identities=24% Similarity=0.331 Sum_probs=92.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..++..+. +|+++|+|+.|++.|++++...+.. ...+++++++|+.++++ +++||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~~~~-~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPAD---VRDRCTLVQGDMSAFAL-DKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHH---HHTTEEEEECBTTBCCC-SCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccc---cccceEEEeCchhcCCc-CCCcCEEEE
Confidence 345999999999999999987765 5999999999999999998763210 01468999999999887 579999885
Q ss_pred c-hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
. .+++|+++++...+++++.++|||||+|++....
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 4 6788888778899999999999999999998644
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=143.50 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||+|||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..+++|...|+. .+.+. +||+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~-~~~p~-~~D~ 238 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFF-DPLPA-GAGG 238 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTT-SCCCC-SCSE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCC-CCCCC-CCcE
Confidence 345689999999999999999988765 7999999 9999999998876544 467999999997 34443 8999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++.+++||+++++...++++++++|+|||++++.|.+.++
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 99999999999887899999999999999999999987543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-17 Score=140.12 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=90.5
Q ss_pred CCccEEEeeccc---cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 157 QHLVALDCGSGI---GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGt---G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
...+|||||||+ |.++..+.+..+. +|+++|+|+.|++.|++++.. ..+++|+++|+.+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHSHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCchhhhccch
Confidence 347999999999 9888766555443 899999999999999999854 356899999997631
Q ss_pred ----CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+||+|++..++||+++++...++++++++|+|||+|++.+...
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 22248999999999999997678899999999999999999998654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=134.02 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. .++++...| .++++++||+|
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEE
Confidence 34678999999999999998887765 7999999999999999982 357888888 55667899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..+++|++ +...+++++.++|||||++++.+....
T Consensus 80 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 80 LFANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp EEESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 9999999998 677999999999999999999976543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=141.19 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=90.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++.+. +++++|+|+.|++.++++....+ .++.+.++|+.+++++ ++||+|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~-~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQDISNLNIN-RKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCCGGGCCCS-CCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcC-------CCeEEEecccccCCcc-CCceEEEE
Confidence 668999999999999998887755 69999999999999999876532 2588999999888776 79999999
Q ss_pred ch-hhhcCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~-~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. +++|++ .++...+++++.++|||||++++.
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98 999994 357889999999999999999985
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=141.23 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=94.9
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
..++..++.... ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+ .++.+++
T Consensus 27 ~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~ 94 (252)
T 1wzn_A 27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN-------LKIEFLQ 94 (252)
T ss_dssp HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEE
T ss_pred HHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcC-------CceEEEE
Confidence 344555554321 34568999999999999999988765 69999999999999999876532 3588999
Q ss_pred cCCCCCCCCCCceeEEecch-hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 219 VPLQDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 219 ~d~~~~~~~~~~fD~Vi~~~-~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.+++++ ++||+|++.. .+++++.++...+++++.++|||||.+++.
T Consensus 95 ~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 999887765 6899999874 567777778899999999999999999875
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=129.99 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=90.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++.. ++.+.+.|+.++++++++||+|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTSCCCCCCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccccCCCCCCceeEEEE
Confidence 678999999999999999887754 69999999999999999863 378899999988777789999999
Q ss_pred c-hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
. .+++|++.++...+++++.++|+|||.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 8 789999877888999999999999999999754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=137.46 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=88.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..++.. .+|+++|+|+.|++.|+++.... ..++++.+.|+.+++++ ++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence 4589999999999999988766 57999999999999999987643 23588999999888766 79999999
Q ss_pred ch-hhhcC-ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~-~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. +++|+ +.++...+++++.++|||||++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 86 99998 4567889999999999999999984
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=141.13 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=97.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||||||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..+++|...|+. .+.+. +||+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~-~~~p~-~~D~ 271 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDFF-ETIPD-GADV 271 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTT-TCCCS-SCSE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCCC-CCCCC-CceE
Confidence 456789999999999999999988765 8999999 9999999998876544 467999999998 34443 8999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++..++|++++++...++++++++|+|||++++.|.+.++
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888889999999999999999999987554
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=141.86 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+++..+. +++++|+| .+++.|++++...++ ..++++...|+.+.+++. .||+|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~-~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGSAFEVDYGN-DYDLV 236 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESCTTTSCCCS-CEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecccccCCCCC-CCcEE
Confidence 46789999999999999999988644 89999999 999999998765443 346999999998876654 49999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++.+++||+++++...++++++++|+|||++++.|...+
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 999999999988889999999999999999999987654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=140.89 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=91.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC--------------C-CC--------CCc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--------------A-PD--------MHK 212 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~--------------~-~~--------~~~ 212 (277)
.++.+|||+|||+|..+..++..++.+|+++|+|+.|++.+++++...+.. + .. ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 466899999999999999887666657999999999999999988653200 0 00 001
Q ss_pred ce-eEEEcCCCCCCC-CC---CceeEEecchhhhcCCh--hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 213 AT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 213 ~~-~~~~~d~~~~~~-~~---~~fD~Vi~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++ .+.++|+.+..+ ++ ++||+|++..++++++. ++...+++++.++|||||++++.+..
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 26 889999988643 44 79999999999995543 27889999999999999999998754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=142.85 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCC------------C------------CCc
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP------------D------------MHK 212 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~------------~------------~~~ 212 (277)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++........ . ...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 5689999999999955433333345899999999999999987654210000 0 001
Q ss_pred ceeEEEcCCCC-CCC-----CCCceeEEecchhhhcCChh--hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 213 ATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 213 ~~~~~~~d~~~-~~~-----~~~~fD~Vi~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+.++.+|+.+ .++ ++++||+|+++.+++|+... ++..++++++++|||||+|++.+.
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 14567778877 442 34679999999999996533 788999999999999999999854
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=132.36 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=91.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++ .+++++++|+.++. +++++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHHHHHhhccCCCccE
Confidence 36689999999999999988877766899999999999999999876433 46899999987764 33579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~~ 271 (277)
|+++..+++. .++...+++++.+ +|+|||++++....
T Consensus 117 i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 117 VLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp EEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred EEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 9999887764 2477899999999 99999999997543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=137.13 Aligned_cols=111 Identities=12% Similarity=-0.032 Sum_probs=91.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHH------HHHHHHHHhCCCCCCCCCCCcceeEEEcC---CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP---LQD 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~------~l~~a~~~~~~~~~~~~~~~~~~~~~~~d---~~~ 223 (277)
..++.+|||||||+|.++..++..+ + .+|+|+|+|+. |++.|++++...++ ..++++...| ...
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTTCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhhcc
Confidence 4577899999999999999999874 4 48999999997 99999999876544 3578999998 344
Q ss_pred CCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 224 ~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++++++||+|++..+++|+++. ..+++.+.++++|||++++.+...
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecC
Confidence 45566899999999999999844 467888888888899999988654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=142.40 Aligned_cols=111 Identities=21% Similarity=0.260 Sum_probs=96.3
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
+.+|||||||+|.++..+++.++. +++++|+ +.+++.+++++...++ ..++++..+|+.+.+. .++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcccCcccCCCCccEEE
Confidence 789999999999999999988765 8999999 8899999998766444 4579999999988751 235799999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+..++||+++++...++++++++|||||++++.|.+.++
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 999999999888899999999999999999999976543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=135.19 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=85.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..+++.+. +|+++|+|+.|++.|+++... .+.+.|+.++++++++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC------------CEEECcHHHCCCCCCCEEEEEE
Confidence 567999999999999998887655 699999999999999988642 2788999988887789999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
..+++|+.+ +...+++++.++|||||++++...
T Consensus 121 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 121 LGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 886666532 477999999999999999998753
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=140.10 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+.+.++++ +|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~--~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYPE--ADA 259 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCTTTSCCCC--CSE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCccccCCCCC--CCE
Confidence 456789999999999999999988654 7999999 9999999998865443 346999999998876654 499
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++..++|++++++...++++++++|||||++++.|.+.+
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 9999999999987789999999999999999999987654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-16 Score=127.37 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++..++ .+|+++|+|+.+++.|++++...++ .++++++.|+.+.....++||+
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~ 111 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPEGLDDLPDPDR 111 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTTTCTTSCCCSE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhhhhhcCCCCCE
Confidence 45778999999999999999998874 3899999999999999998865432 4689999999766544468999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++..+++ +...+++++.++|||||++++...
T Consensus 112 i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 112 VFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp EEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 99998765 556899999999999999999754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=140.20 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC-CCCCCcceeEEEcCCCCCC----CC--CC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----PE--TG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~----~~--~~ 229 (277)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++....+.. ......++.++++|+.+.+ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 56799999999999999888765558999999999999999987531100 0000246899999998875 42 45
Q ss_pred ceeEEecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+||+|+++.++||+ +.++...+++++.++|||||+++++..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 89999999999998 445678999999999999999999754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=142.18 Aligned_cols=115 Identities=15% Similarity=0.018 Sum_probs=91.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhC-------CCCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
..++.+|||||||+|.++..++..... +|+|||+|+.|++.|+++.. ..++. ..+++|+++|+.+.++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----HAEYTLERGDFLSEEW 246 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC----CCEEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC----CCCeEEEECcccCCcc
Confidence 567889999999999999988866444 59999999999999987532 11110 1479999999998775
Q ss_pred CC--CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 023787 227 ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276 (277)
Q Consensus 227 ~~--~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (277)
.+ ..||+|+++..++ . ++....|.++.+.|||||+|++.|.+.+.++
T Consensus 247 ~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 247 RERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp HHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 43 4799999987753 2 4777899999999999999999998876554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=140.66 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ..||+
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~ 251 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFK-PLP-VTADV 251 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-CCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-cCC-CCCCE
Confidence 346789999999999999999988754 8999999 9999999998866443 3479999999876 333 34999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++..++||+++++...++++++++|||||++++.|.
T Consensus 252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999987778999999999999999999998
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=125.73 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=84.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++...+ .+|+++|+|+.+++.|++++...+. ..++ +++.|..+ ++..+++||
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCTTGGGGGCCSCCS
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecchHhhhhccCCCCC
Confidence 45778999999999999998887753 3899999999999999999876554 2357 77777754 232227899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++..++++ ..+++++.++|||||++++.+..
T Consensus 97 ~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 97 VIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp EEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred EEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 9999999987 37999999999999999997653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-16 Score=126.96 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=89.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
.++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.|++++...++ ..+++++++|+.+++ ..+++||
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHhhhccCCce
Confidence 467899999999999999998773 2 3899999999999999999876544 357999999988775 4557999
Q ss_pred EEecchhhh-------cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIG-------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~-------~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++..+. ....++...+++++.++|||||++++...
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 999887551 11233556799999999999999999864
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-17 Score=135.91 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=82.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCC-CCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE-TGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~f 231 (277)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.++++ .++.+...++.++ ++. .++|
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------------GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------------CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------------cccccchhhHHhhcccccccCCCc
Confidence 3568999999999999998887755 699999999999999987 1245666666555 333 3469
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|++..+++ .. +...+++++.++|||||++++.+..
T Consensus 118 D~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 118 DLICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp EEEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 9999999998 55 6669999999999999999998764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=149.02 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=93.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++............+++|+++|+.++++.+++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 3678999999999999998887763 47999999999999999865421000000125799999999999988889999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++..+++|++++....+++++.++|||| .++++.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 99999999999877778999999999999 777764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=136.49 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++.+ ...+|+++|+|+.|++.|++++...++ .+++|+++|+.+++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhCC--CCCcCE
Confidence 678899999999999776555444 334899999999999999999876443 46899999998875 579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++... .+ +...+++++.++|||||+|++.+.
T Consensus 192 V~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998655 34 677999999999999999999763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=131.30 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCc-eeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-fD~ 233 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++. ..+++++++|+.++.. .+++ ||+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCHHHHHHhhccCCCCCE
Confidence 45799999999999999888787778999999999999999998765430 0468999999876532 2568 999
Q ss_pred EecchhhhcCChhhHHHHHHHH--HhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~--~r~LkpGG~lii~e~~ 271 (277)
|++...++ .. +...+++.+ .++|+|||++++..+.
T Consensus 129 I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 129 VFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp EEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 99988854 33 666888888 6789999999997654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=130.15 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (277)
.++.+|||+|||+|..+..++.. ..+++++|+|+.+++.++++. .++...|+.+ .++++++||+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCE
Confidence 36689999999999999988877 468999999999999998754 2567888876 4556689999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|++..+++|++ +...+++++.++|+|||++++....
T Consensus 97 v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 97 VIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999999998 5569999999999999999998643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=134.04 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCccEEEeeccccH----HHHHHHHhCC-----CcEEEEeCCHHHHHHHHHHhCCC----CC---------------CCC
Q 023787 157 QHLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPE----NH---------------MAP 208 (277)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~-----~~v~gvD~S~~~l~~a~~~~~~~----~~---------------~~~ 208 (277)
++.+|||+|||||. ++..+++... .+|+|+|+|+.|++.|++..-.. ++ .+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555555412 27999999999999999874110 00 000
Q ss_pred ------CCCcceeEEEcCCCCCCCC-CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecC
Q 023787 209 ------DMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (277)
Q Consensus 209 ------~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (277)
....++.|.+.|+.+.+++ .++||+|+|.++++|++++....+++++++.|+|||+|++. |.+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~~ 256 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF 256 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecccc
Confidence 0013689999999886554 47899999999999999888889999999999999999984 554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=133.63 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=87.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C--CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~fD 232 (277)
++.+|||||||+|.++..++...+. .|+|+|+|+.|++.|+++....++ .++.++++|+.++ + +++++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCCChh
Confidence 5679999999999999999988765 799999999999999999866543 4689999998774 2 5678999
Q ss_pred EEecchhhhcCChhhH------HHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDF------VSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~------~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|++++...+...... ..+++++.++|||||+|++..+
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998865443322221 2599999999999999999754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=137.98 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++ ..+++++.+|+.++++++++||+|
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHHhcCCCCcEEEE
Confidence 346789999999999999988887666899999996 99999999876554 357999999999988777899999
Q ss_pred ecch---hhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQW---CIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~---~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++.+ .+.+.. ++..++.++.++|||||+++
T Consensus 136 vs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 9877 344444 67789999999999999998
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=137.75 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=92.9
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.+|||+|||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..++++...|+.+ +.+ ++||+|++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDMLQ-EVP-SNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCTTT-CCC-SSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCCCC-CCC-CCCCEEEEc
Confidence 89999999999999999988654 8999999 9999999998754322 2468999999987 444 689999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.++||+++++...++++++++|+|||++++.|.+.+
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 999999988888999999999999999999998654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=133.89 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCCC-CCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPE-TGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~fD~ 233 (277)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.++++. .+++++++|+ ..++++ +++||+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~ 114 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGL 114 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEE
Confidence 3678999999999999999887754 6999999999999999982 3588999999 566766 789999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|+++ . +...+++++.++|||||+++.
T Consensus 115 v~~~------~--~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 115 IVSR------R--GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EEEE------S--CCSGGGGGHHHHEEEEEEEEE
T ss_pred EEeC------C--CHHHHHHHHHHHcCCCcEEEE
Confidence 9987 1 344799999999999999983
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=128.32 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=87.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
++.+|||||||+|.++..++...+. +++|+|+|+.+++.|++++...++ .++.++++|+.+++ +++++||+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCCCE
Confidence 5678999999999999999988654 899999999999999998865433 46899999998876 66689999
Q ss_pred EecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+++....+.... ....+++++.++|+|||++++..
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9998764332211 13579999999999999999864
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=125.75 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=85.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+......+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTTGGGTTSCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchhhhcccCCCCCEE
Confidence 456789999999999999999877 55799999999999999999876544 236899999998843333589999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++...+ +.. +++++.++|||||++++...
T Consensus 127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred EECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 987744 344 99999999999999999754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-16 Score=127.86 Aligned_cols=102 Identities=19% Similarity=0.085 Sum_probs=87.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.|++++...++ .++++..+|+.+...++++||+|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEE
Confidence 4577899999999999999998774 4799999999999999999876543 36899999998866566799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|+++ ++.+.|||||++++.-..
T Consensus 148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999883 478999999999997543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-16 Score=129.74 Aligned_cols=107 Identities=12% Similarity=0.236 Sum_probs=85.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|++++...++ .++.++++|+.+++ +++++||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCcCE
Confidence 5678999999999999999987654 799999999999999998866443 46899999988764 56689999
Q ss_pred EecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++++...+.... ....+++++.++|||||.|++..
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 9887653322210 13579999999999999999874
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-16 Score=140.72 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=92.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|++++..+++ ..+++++++|+.+++++ ++||+|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~I 133 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVEDISLP-EKVDVI 133 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGGGCCCS-SCEEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchhhcCcC-CcceEE
Confidence 45678999999999999999998877689999999 999999999877655 45689999999998876 799999
Q ss_pred ecchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++.++.+++.. ..+..++.++.++|||||++++.+
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99776665542 357789999999999999998764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-16 Score=124.46 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCc-ceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...++ .. ++++.+.|+.+.. ++++||+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~D~ 122 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDLYENV-KDRKYNK 122 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECSTTTTC-TTSCEEE
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECchhccc-ccCCceE
Confidence 346789999999999999988877 55799999999999999999865443 11 3899999988743 3578999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+++.++++. .++...+++++.++|+|||++++....
T Consensus 123 v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 123 IITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 9999887763 346779999999999999999998654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=137.29 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=93.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..+++++.+|+.+ +.+ ..||+
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~ 252 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFE-PLP-RKADA 252 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-SCEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-CCC-CCccE
Confidence 346789999999999999999988754 7999999 9999999998866443 3479999999876 333 35999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|++..++||+++++...++++++++|||||++++.|.+
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99999999999877789999999999999999999986
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=138.91 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=90.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++....++ ..+++++++|+.++++++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCC-----CCcEEEEECcHHHccCCCCceEEEE
Confidence 3568999999999999999988866689999999 599999999877655 3569999999999988778999999
Q ss_pred cchhhhcC-ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.++.+++ ...++..++.++.++|||||++++.
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 98764444 2236779999999999999998743
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=125.98 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=77.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (277)
..++.+|||+|||+|..+..+++... .+|+|+|+|+.|++.+.+.... ..++.++.+|+... ++. +
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~-~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV-E 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC-C
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhcccc-c
Confidence 45778999999999999998887653 3799999999988766655433 23577888888763 334 7
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|+++.. + ..+...++++++++|||||+|+++
T Consensus 126 ~fD~V~~~~~-~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 126 KVDLIYQDIA-Q---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CEEEEEECCC-S---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEecc-C---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999998732 1 124456799999999999999997
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-16 Score=140.16 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=92.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++ .+++++.|+.+...++++||+|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~~~~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVDEALTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTSCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchhhccccCCCeEEEEE
Confidence 567999999999999999988755 799999999999999999876543 378999999988766689999999
Q ss_pred chhhhc---CChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~---~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.++|+ ...++...+++++.++|||||+++++.+
T Consensus 305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 999988 3345778999999999999999999865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=136.73 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=87.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|..+..+++.++. +++++|+ +.++. +++....+. ..++++..+|+.+ +.+ +||+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~-----~~~v~~~~~d~~~-~~p--~~D~ 250 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV-----AGRWKVVEGDFLR-EVP--HADV 250 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG-----TTSEEEEECCTTT-CCC--CCSE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC-----CCCeEEEecCCCC-CCC--CCcE
Confidence 456789999999999999999988766 7899999 45544 333322222 3579999999962 333 8999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++..++||+++++...++++++++|||||++++.|.+.++
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 99999999999887789999999999999999999986543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=127.44 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...+. .++++.+.|+.+.. +++||+|++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~--~~~fD~i~~ 131 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI------YDIALQKTSLLADV--DGKFDLIVA 131 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESSTTTTC--CSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEeccccccC--CCCceEEEE
Confidence 6789999999999999988876555899999999999999999876543 23889999997754 479999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+.++++ +..+++++.++|+|||++++.+..
T Consensus 132 ~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 132 NILAEI-----LLDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp ESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred CCcHHH-----HHHHHHHHHHhcCCCCEEEEEecC
Confidence 988765 458999999999999999997643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-17 Score=130.17 Aligned_cols=120 Identities=10% Similarity=0.038 Sum_probs=91.7
Q ss_pred cccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCc
Q 023787 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (277)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~ 212 (277)
.++....++...... ..++.+|||+|||+|.++..++...+. +|+++|+|+.|++.+++++...|. ..
T Consensus 32 RLp~ld~fY~~~~~~------l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----~~ 100 (200)
T 3fzg_A 32 RVATLNDFYTYVFGN------IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----TI 100 (200)
T ss_dssp TGGGHHHHHHHHHHH------SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----SS
T ss_pred HhHhHHHHHHHHHhh------cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----Cc
Confidence 345555565554432 235789999999999999988765333 899999999999999999877554 22
Q ss_pred ceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++++ .|.... .++++||+|++..++|+++ +....+.++.+.|+|||+++-.+
T Consensus 101 ~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~--~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 101 KYRF--LNKESD-VYKGTYDVVFLLKMLPVLK--QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEE--ECCHHH-HTTSEEEEEEEETCHHHHH--HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred cEEE--eccccc-CCCCCcChhhHhhHHHhhh--hhHHHHHHHHHHhCCCCEEEEeC
Confidence 4555 555443 3457899999999999994 55577779999999999998877
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=137.75 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+++.+..+|+++|+|+ |++.|++++..+++ ..+++++.+|+.+++.+ ++||+|+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~~~~~~-~~~D~Iv 121 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDIII 121 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchhhCCCC-CceeEEE
Confidence 46789999999999999988877666899999996 99999998876554 35799999999988765 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+++|+..++....+.++.++|||||++++.
T Consensus 122 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 122 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999988887677778899999999999999854
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-18 Score=142.87 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=83.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..++..+ .+|+++|+|+.|++.|++++...++ ..+++++++|+.+++ ++++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChHHhc-ccCCCCEEEE
Confidence 57899999999999999999776 5799999999999999999876543 357999999998776 4479999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+.++++.... ...+.+++++|+|||.+++
T Consensus 151 ~~~~~~~~~~--~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 151 SPPWGGPDYA--TAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCCSSGGGG--GSSSBCTTTSCSSCHHHHH
T ss_pred CCCcCCcchh--hhHHHHHHhhcCCcceeHH
Confidence 9999887633 3466677788888887554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-16 Score=128.62 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=83.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+.+|||+|||+|.++..++.. +++|+|+.|++.++++ ++.+.+.|+.++++++++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 679999999999999877533 9999999999999886 2678899998888777899999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+++|++ +...+++++.++|+|||++++.+..
T Consensus 110 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 110 TTICFVD--DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 9999998 6679999999999999999998654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-17 Score=147.42 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=83.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... .....+...+...+++++++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR--------VRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC--------EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC--------cceeeechhhHhhcccCCCCEEEE
Confidence 45678999999999999999987766 699999999999999876211 011112223333444455799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++ ++..++++++++|||||++++...
T Consensus 176 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 176 YAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999998 778999999999999999999754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=125.23 Aligned_cols=109 Identities=8% Similarity=-0.016 Sum_probs=87.4
Q ss_pred cCCCcCCCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--
Q 023787 149 RFPNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (277)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (277)
.+......++.+|||+|||+|.++..+++. ++. +|+++|+|+.|++.++++... ..++..+..|..+.
T Consensus 69 gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARFPEK 140 (233)
T ss_dssp TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTCGGG
T ss_pred chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccCccc
Confidence 333345789999999999999999999876 343 899999999999999999876 35688888877653
Q ss_pred -CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 225 -~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+...+++|+|++... +.. +...++.++++.|||||.++++.
T Consensus 141 ~~~~~~~vDvVf~d~~--~~~--~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 141 YRHLVEGVDGLYADVA--QPE--QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GTTTCCCEEEEEECCC--CTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceEEEEEEecc--CCh--hHHHHHHHHHHhccCCCEEEEEE
Confidence 345679999986543 323 56689999999999999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-16 Score=132.50 Aligned_cols=110 Identities=19% Similarity=0.061 Sum_probs=89.1
Q ss_pred CC-CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NN-QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~-~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
.. ++.+|||+|||+|.++..++..+..+|+++|+++.+++.|++++...++ ..+++++++|+.++. +++++|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGGGTSCTTCE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhhhhhccCCc
Confidence 44 6789999999999999988877665899999999999999999877655 356899999998875 446899
Q ss_pred eEEecchhhhcC------------------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHL------------------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~------------------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+++..+... ...++..+++.+.++|||||++++.-
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 999997654332 11346789999999999999999964
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=136.53 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++..++ .+|+++|+|+.|++.|++++..+++.. ..+++|+..|+.+ .+++++||+
T Consensus 220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~---~~~v~~~~~D~~~-~~~~~~fD~ 295 (375)
T 4dcm_A 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---LDRCEFMINNALS-GVEPFRFNA 295 (375)
T ss_dssp CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG---GGGEEEEECSTTT-TCCTTCEEE
T ss_pred ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc---CceEEEEechhhc-cCCCCCeeE
Confidence 34558999999999999999998864 489999999999999999987654310 1357889999987 345579999
Q ss_pred EecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+++..+|+. +......+++++.++|||||+++++.|.
T Consensus 296 Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 296 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 9999998863 3334557899999999999999998653
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=127.20 Aligned_cols=106 Identities=21% Similarity=0.153 Sum_probs=84.5
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (277)
.++.+|||+||| +|.++..++.....+|+++|+|+.+++.|++++...+. +++++++|+..+ ++++++||+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGGIIKGVVEGTFDV 126 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSCSSTTTCCSCEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCchhhhhcccCceeE
Confidence 467899999999 99999998877445799999999999999999876432 688999997544 244579999
Q ss_pred EecchhhhcCChh-----------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDD-----------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~-----------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+++..+++.++. ....+++++.++|||||++++.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 9999776654421 1478999999999999999985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=136.52 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=89.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..+++.++. +|+++|+|+.|++.+++++...+. ...+...|+.+.. +++||+|+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~~~~~--~~~fD~Iv 266 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNVFSEV--KGRFDMII 266 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTC--CSCEEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccccccc--cCCeeEEE
Confidence 4579999999999999999988764 899999999999999999866432 3567888887654 57899999
Q ss_pred cchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.++|+. ...+...+++++.++|||||.+++..+.
T Consensus 267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99998863 3346789999999999999999998764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=127.96 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=88.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCC---CCCCCCCCCcceeEEEcCCCCC------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQDF------ 224 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~d~~~~------ 224 (277)
..++.+|||+|||+|.++..++.+.+. +|+++|+++.+++.|++++.. .++ ..++++++.|+.++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhhh
Confidence 346679999999999999999888754 899999999999999999887 654 34699999999987
Q ss_pred -CCCCCceeEEecchhhhc----------------CChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 225 -TPETGRYDVIWVQWCIGH----------------LTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 225 -~~~~~~fD~Vi~~~~l~~----------------~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+++++||+|+++..+.. .....+..+++.+.++|||||++++.-
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 245679999999844332 122347789999999999999999863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-16 Score=123.66 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=85.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++ ..+++++++|+.+. +..+++||+|+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~i~ 105 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF 105 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHHHhHHhhcCCCCEEE
Confidence 5679999999999999998877556899999999999999999877554 34789999998763 32235799999
Q ss_pred cchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~e~~ 271 (277)
++..++. .....+++.+. ++|+|||++++....
T Consensus 106 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 106 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 9877542 24456777776 999999999997554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-16 Score=131.04 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (277)
.++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++....++ .+++++++|+.++++. +++|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCCc
Confidence 3567999999999999998886443 3799999999999999998765443 3589999998877643 5799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|++..+ . ++..+++.+.++|||||++++..
T Consensus 143 D~V~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 143 DIVTARAV----A--RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEEEECC----S--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cEEEEecc----C--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 99998763 3 56799999999999999999875
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-16 Score=126.68 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=85.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++.++..+|+++|+|+.|++.|++++...++ .+++++++|+.++ +..+++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHhhcCCCCCEEE
Confidence 4579999999999999988888776899999999999999999876443 4689999998763 44457899999
Q ss_pred cchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~ 270 (277)
+...++ .. ....+++.+.+ +|+|||++++..+
T Consensus 128 ~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 128 VDPPFR-RG--LLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp ECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 987754 23 55678888865 5999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=124.46 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++... .++++.++|+.+....+++||+|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc--------CCeEEEECCcccccccCCCccEE
Confidence 4567899999999999999998877 57999999999999999998763 26889999987743345789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++..+++|+++ ++.++|||||++++..+.
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999872 588899999999998654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=124.63 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=83.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----CCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~ 229 (277)
..++.+|||+|||+|..+..++.... .+|+++|+|+.|++.++++... ..++.++.+|+.+ .++. +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-c
Confidence 45678999999999999999988753 4899999999999999998765 3568899999988 6665 7
Q ss_pred ceeEEecchhhhcCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|+ +++++. ....+++++.++|||||++++.
T Consensus 143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 899999 444422 3367899999999999999996
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=135.15 Aligned_cols=104 Identities=17% Similarity=0.331 Sum_probs=89.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||||||+|..+..+++.++. +++++|+ +.+++.+++ ..+++|+.+|+.+ +.+++ |+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCC-CCCCC--CE
Confidence 346689999999999999999988766 7999999 888876653 2468999999987 55543 99
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++..++|++++++...+|++++++|||||++++.|.+.++
T Consensus 265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888889999999999999999999987543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=134.55 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=89.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||||||+|..+..+++.++. +++++|+ +.+++.|++ ..+++|..+|+.+ +.+.+ |+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~~p~~--D~ 262 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFK-EVPSG--DT 262 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCC-CCCCC--CE
Confidence 346689999999999999999988766 8999999 888876653 2469999999987 65543 99
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|++.+++|++++++...+|++++++|||||+++|.|.+.++
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888999999999999999999999987543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=128.22 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CC--CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~f 231 (277)
.++.+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++............++.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45679999999999999998877654 799999999999999877532000000002579999999987 44 667899
Q ss_pred eEEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|.|++.+...+.... ....+++++.++|||||.|++.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 999876543222100 0147999999999999999986
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=130.20 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=94.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.....+|+|||||+|.++..++++++. ++++.|. |.+++.|+++....+ ..++++..+|+.+.+.+ .+|+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~~--~~D~ 247 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPLP--EADL 247 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCCC--CCSE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCCC--CceE
Confidence 445679999999999999999999887 7888887 889999999876532 36799999999875544 5899
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++.+++|+.++++...+|+++++.|+|||+++|.|.+.+
T Consensus 248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 9999999999998889999999999999999999998754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=128.92 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=87.2
Q ss_pred CCCccEEEeeccccHHHHHHHHh--CC-CcEEEEeCCHHHHHHHHHHhCCC---CCCCCCCCcc----------------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPE---NHMAPDMHKA---------------- 213 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~-~~v~gvD~S~~~l~~a~~~~~~~---~~~~~~~~~~---------------- 213 (277)
.++.+|||+|||+|.++..++.. .. .+|+|+|+|+.|++.|++++... ++ ..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-----TARELERREQSERFGKPSY 124 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-----HHHHHHHHHHHHHHCCHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-----cccchhhhhhhhhcccccc
Confidence 35689999999999999988876 32 37999999999999999887653 21 011
Q ss_pred ---------ee-------------EEEcCCCCCCC-----CCCceeEEecchhhhcCCh-------hhHHHHHHHHHhcC
Q 023787 214 ---------TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGL 259 (277)
Q Consensus 214 ---------~~-------------~~~~d~~~~~~-----~~~~fD~Vi~~~~l~~~~~-------~d~~~~l~~~~r~L 259 (277)
++ +.+.|+.+... ...+||+|+++..+++... +....+++++.++|
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L 204 (250)
T 1o9g_A 125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 204 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence 55 89999887432 3348999999987776542 45678999999999
Q ss_pred CCCcEEEEEecC
Q 023787 260 KPGGFFVLKENI 271 (277)
Q Consensus 260 kpGG~lii~e~~ 271 (277)
+|||+++++.+.
T Consensus 205 kpgG~l~~~~~~ 216 (250)
T 1o9g_A 205 PAHAVIAVTDRS 216 (250)
T ss_dssp CTTCEEEEEESS
T ss_pred CCCcEEEEeCcc
Confidence 999999997654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=123.08 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=85.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++ ..+++++++|+.+.. .++++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHHHHHHHHHhcCCCC
Confidence 35679999999999999988876656899999999999999999866443 346899999987642 124789
Q ss_pred eEEecchhhhcCChhhHHHHHHHH--HhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~--~r~LkpGG~lii~e~~ 271 (277)
|+|+++.+++.. ....+++.+ .++|+|||++++....
T Consensus 118 D~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 118 DLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 999998886532 334566666 8999999999987543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-16 Score=127.77 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=75.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..+. .+|+++|+|+. ++.+.++|+.++++++++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEE
Confidence 356899999999999988662 46999999976 25678899998888778999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..++|+ + +...+++++.++|+|||++++.+..
T Consensus 121 ~~~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 121 FCLSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp EESCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred Eehhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 9999975 4 6779999999999999999998764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=132.71 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+..+|+++|+| .|++.|++++..+++ ..+++++.+|+.++++++++||+|++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhhccCCCCcccEEEE
Confidence 567999999999999998887766689999999 699999999876554 35689999999998877689999999
Q ss_pred chhhhcCC-hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.++.+++. ...+..++.++.++|||||++++
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 86544432 23577899999999999999974
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=135.01 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+..+|||||||+|..+..+++.++. +++++|+ +.|++.|++ ..+++++.+|+.+ +.+. ||+|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~~--~D~v 271 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------------LSGIEHVGGDMFA-SVPQ--GDAM 271 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCC--EEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------------cCCCEEEeCCccc-CCCC--CCEE
Confidence 45689999999999999999988765 7888899 999987653 1358999999987 5543 9999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++..++||+++++...++++++++|||||++++.|.+.+
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 999999999977777999999999999999999987643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=126.70 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhC----CCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA----PENHMAPDMHKATNFFCVPLQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (277)
..++.+|||+|||+|.++..++..++. +|+|+|+|+.|++.+.++.. ..+ ..++.+.++|+.+++++++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~------~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG------LPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC------CTTEEEEECCSTTCCSCCC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC------CCceEEEecchhhCCCCCC
Confidence 346789999999999999999988643 89999999999996443332 222 2478999999999887765
Q ss_pred ceeEEe---cchhhh--cCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIW---VQWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi---~~~~l~--~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+ |.|+ +...++ |++ +...+++++.++|||||++++..
T Consensus 99 ~-d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 99 V-GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp E-EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred C-CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence 5 6655 333443 666 34589999999999999999964
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=130.39 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++..+++ ..+++++++|+.++.. +++||+|++
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~~-~~~fD~Vi~ 198 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPG-ENIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhcc-cCCccEEEE
Confidence 5789999999999999999988776799999999999999999877655 3458899999999876 579999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.... ....++.++.++|||||++++.++..
T Consensus 199 ~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 199 GYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCch------hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 6542 22478999999999999999987653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=138.69 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+++.+..+|+++|+|+ |++.|++++...++ ..+++++.+|+.+++++ ++||+|+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~~~~~~-~~fD~Iv 229 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDIII 229 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchhhCccC-CCeEEEE
Confidence 45689999999999999988876555899999998 99999998876654 45799999999987655 5899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+..+++|+..++....+.++.++|||||++++
T Consensus 230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 99888887766777888899999999999985
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=126.10 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=84.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C-CC----C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PE----T 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~ 228 (277)
++.+|||||||+|..+..+++... .+|+++|+|+.|++.|++++...++ ..+++++++|+.+. + .. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHGGGTTTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHHHHHHHHhcCC
Confidence 567999999999999998886532 3899999999999999999876554 35699999987543 2 11 2
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++||+|++....++.. +...++..+ ++|||||++++.+..
T Consensus 133 ~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 6899999988776654 444678878 999999999886543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=130.67 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=86.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|.++..+++.+.. +|+++|+|+.+++.|++++...++ .++++...|+.+...++++||
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 146 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeE
Confidence 457789999999999999998877542 599999999999999999876543 358999999987655557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+++|++ +++.+.|||||++++...
T Consensus 147 ~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 147 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred EEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 999999999987 357889999999999854
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=133.09 Aligned_cols=114 Identities=13% Similarity=-0.008 Sum_probs=87.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHH-------HHHhCCCCCCCCCCCcceeEEEcCCCCC--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (277)
..++.+|||||||+|..+..++.... .+|+|+|+|+.+++.| ++++...++. ..+++++++|....
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----LNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----CCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----CCceEEEEcCcccccc
Confidence 45778999999999999999987643 4799999999999988 7777654320 14688888754321
Q ss_pred CC--CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 225 TP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 225 ~~--~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
++ ..++||+|+++.++ +. +++..+|+++.+.|||||++++.+...+..
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 11 23689999987766 32 377789999999999999999998776554
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=121.82 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=84.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++...+. .++.+...|+......+++||
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYD 148 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCee
Confidence 45678999999999999999988763 4799999999999999998765332 358888888754333357899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+++|++ +++.++|||||++++...
T Consensus 149 ~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 149 RIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 999999999987 278899999999999854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=126.74 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~ 233 (277)
++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...++ ..+++++++|+.+... .+++||+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhhccCCccE
Confidence 56799999999999999988743 23899999999999999999876554 3579999999877532 2579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++.... .....+++++.++|||||+|++.+
T Consensus 146 V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 146 IFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEEETTS-----SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEee
Confidence 9976542 256689999999999999998743
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-15 Score=121.09 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=84.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++...+ .+++++|+|+.+++.+++++...++ .++.+.+.|+.+.+ +.++||+|+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~-~~~~~D~i~ 137 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFP-SEPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSC-CCSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecchhhCC-ccCCcCEEE
Confidence 367999999999999999987753 3899999999999999998866443 34899999998876 346899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+... . ++..+++++.++|+|||++++...
T Consensus 138 ~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 138 SRAF----A--SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSCS----S--SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred Eecc----C--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8643 2 566899999999999999999743
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=125.18 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=84.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCC-cceeEEEcCCCCCC--CCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~f 231 (277)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ . .+++++++|+.++. .++++|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~~l~~~~~~~f 130 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLDVMSRLANDSY 130 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHGGGSCTTCE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHHHHHHhcCCCc
Confidence 345999999999999999987653 3899999999999999999887655 3 57999999876652 335799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|++.... .+...+++++.++|||||++++.+.
T Consensus 131 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 131 QLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp EEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred CeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 999987542 2566799999999999999998543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=132.27 Aligned_cols=102 Identities=13% Similarity=0.238 Sum_probs=87.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+..+|||||||+|..+..+++.++. +++++|+ +.|++.|++. .++++..+|+.+ +.+ .||+|
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~v 250 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADAV 250 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccEE
Confidence 35679999999999999999988654 7999999 9999877541 348999999976 444 39999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCC---CcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~e~~~~ 273 (277)
++.+++||+++++...++++++++||| ||++++.|.+.+
T Consensus 251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 999999999977777999999999999 999999987643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=125.98 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=85.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (277)
.++.+|||||||+|..+..++...+. +|+++|+|+.+++.|+++....++ .+++++++|+++++.. +++|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCCc
Confidence 46789999999999999988877543 899999999999999999876554 3589999998877642 3799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|++..+ . ++..+++.+.++|||||++++...
T Consensus 153 D~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 153 ARAVARAV----A--PLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred eEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999754 2 566899999999999999988653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-15 Score=120.92 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++...+. ..++.+.+.|+.+.....++||+|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 104 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHHHhcccCCCCCEE
Confidence 4567899999999999999888776 6799999999999999998765433 246888888876621112589999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..++++ +..+++++.++|+|||++++...
T Consensus 105 ~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99887754 45899999999999999999754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-15 Score=125.61 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=78.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCC-HHHHHHH---HHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TG 229 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 229 (277)
.++.+|||||||+|.++..+++..+. +|+|+|+| +.|++.| +++....++ .++.|.++|+.+++.. .+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~~d 96 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFELKN 96 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGGTT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhccC
Confidence 46789999999999999988865544 79999999 7777776 666554433 4689999999988532 25
Q ss_pred ceeEEecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|.|++++...+. ...+...++++++|+|||||++++.
T Consensus 97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 67777665432211 0012346899999999999999994
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-15 Score=126.65 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred chHHHHHHHHhccCCCcCCCCCccEEEeeccc--cHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCc
Q 023787 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (277)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGt--G~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~ 212 (277)
..+.|+...+..+.. .....+|||||||+ +..+..++.. .+. +|+++|.|+.|++.|++++...+ ..
T Consensus 61 ~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~ 131 (277)
T 3giw_A 61 ANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EG 131 (277)
T ss_dssp HHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SS
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CC
Confidence 445566655543321 12346899999997 3333445543 332 89999999999999999987532 24
Q ss_pred ceeEEEcCCCCCC----CC--CCcee-----EEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 213 ATNFFCVPLQDFT----PE--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 213 ~~~~~~~d~~~~~----~~--~~~fD-----~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++|+++|+.+.. .+ .+.|| .|+++.+|||+++.+ ...+++++.+.|+|||+|++++.+.
T Consensus 132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 6899999998852 01 23455 588999999999655 6789999999999999999997654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=145.00 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=90.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~V 234 (277)
.+.+|||||||+|.++..|++.+.. |+|||+|+.+|+.|+.+....+. .+++|.+.+++++ ..++++||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHHHhhhccCCCccEE
Confidence 5689999999999999999988775 99999999999999998876442 4699999999887 3556899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|..+++|+++++....+..+.+.|+++|..++...+.
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99999999986654444566777888888777765544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=124.37 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=82.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHh-----CCCCCCCCCCCcceeEEEcCCCCCC--C-
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESL-----APENHMAPDMHKATNFFCVPLQDFT--P- 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~-S~~~l~~a~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~--~- 226 (277)
.++.+|||+|||+|.++..++..+..+|+++|+ |+.+++.|+++. ...++.. ....++.+...+..+.. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET-VKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc-CCCCCeEEEEecCCCccHHHH
Confidence 356799999999999999888766658999999 899999999998 3332200 00035777766655431 1
Q ss_pred ---CCCceeEEecchhhhcCChhhHHHHHHHHHhcCC---C--CcEEEEE
Q 023787 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK---P--GGFFVLK 268 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~Lk---p--GG~lii~ 268 (277)
++++||+|++..+++|.+ +...+++.+.++|+ | ||++++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 347899999999999866 77799999999999 9 9987765
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=124.38 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=84.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CC--CCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP--ETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~--~~~~f 231 (277)
++.+|||||||+|..+..++...+ .+|+++|+|+.+++.|++++...++ ..+++++++|+.+. +. ..++|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHTCCSCCCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHhcCCCCCe
Confidence 568999999999999999987653 3899999999999999999876554 35799999988653 21 23589
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|++... ..+...+++++.++|||||+|++.+..
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 138 DLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 99998653 335668999999999999999886543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.1e-15 Score=131.55 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=87.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++...++.+..+|++||.|+ |++.|++.+..+++ ..++.++.++++++.++ .+||+|++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeeeecCC-ccccEEEe
Confidence 5679999999999999988877888999999995 89999999888776 56799999999998876 68999998
Q ss_pred chhhhcCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii 267 (277)
.+.-..+..+ .+..++....+.|||||.++.
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 6543333322 577899999999999999875
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=118.08 Aligned_cols=96 Identities=21% Similarity=0.100 Sum_probs=79.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .++++.++|+.+ +.++++||+|++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~---------~~~~~~~~d~~~-~~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H---------RGGNLVRADLLC-SINQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C---------SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c---------cCCeEEECChhh-hcccCCCCEEEE
Confidence 56799999999999999888776 79999999999987 1 347889999987 445579999999
Q ss_pred chhhhcCChh-------hHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~-------d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..+++.++. +...+++++.+.| |||++++.++.
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 9998865533 3457889999999 99999998653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=121.44 Aligned_cols=102 Identities=15% Similarity=-0.010 Sum_probs=81.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 229 (277)
..++.+|||+|||+|.++..+++.. + .+|+++|+|+.|++.+.++... ..++.++++|+.+. +..++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCC
Confidence 4567899999999999999998774 2 4799999999988877776654 24688999999873 33457
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|++... ..+....++.++.++|||||++++.
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999998655 2224456788999999999999995
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=123.93 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.|++++... +. .++++.++|+.+ .+++++|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~~~~d~~~-~~~~~~f 180 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRTSRSDIAD-FISDQMY 180 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEEECSCTTT-CCCSCCE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEEEECchhc-cCcCCCc
Confidence 557789999999999999999877 3 237999999999999999998664 32 468999999987 4455789
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|++ +++ +...+++++.++|||||++++....
T Consensus 181 D~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 181 DAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred cEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99998 445 3448999999999999999998653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-15 Score=134.71 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=86.4
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeecc------ccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSG------IGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMA 207 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcG------tG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~ 207 (277)
..+..++..++.... .++.+||||||| +|..+..+++.+ + .+|+|+|+|+.|. . .
T Consensus 200 h~y~~~Ye~lL~~l~-----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~----- 262 (419)
T 3sso_A 200 HWFTPHYDRHFRDYR-----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D----- 262 (419)
T ss_dssp CBCHHHHHHHHGGGT-----TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C-----
T ss_pred chHHHHHHHHHHhhc-----CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c-----
Confidence 344556666665432 356899999999 776677677664 2 2899999999983 1 1
Q ss_pred CCCCcceeEEEcCCCCCCCC------CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 208 PDMHKATNFFCVPLQDFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 208 ~~~~~~~~~~~~d~~~~~~~------~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|+++|+.++++. +++||+|++..+ |+.. +...+|++++++|||||++++.|..
T Consensus 263 ---~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 263 ---ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ---BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ---CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 35799999999987765 579999998754 5543 7789999999999999999998765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=116.78 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++. ...+++++|+|+.+++.+++++...++ .++++++.|+.+ ++++++||+|
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHHH-HGGGCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCccc-cccCCCCcEE
Confidence 44678999999999999998886 445799999999999999999876443 458899999877 4455789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+ .+...+++++.++ |||.+++...
T Consensus 105 ~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 105 FIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp EECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred EECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 99988 2566899999998 9999999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=122.13 Aligned_cols=103 Identities=14% Similarity=0.215 Sum_probs=85.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCC--CCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE--TGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~fD 232 (277)
++.+|||+|||+|..+..++...+ .+|+++|+|+.+++.|++++...++ ..++.+..+|+.+. +.. +++||
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhcccCCCcc
Confidence 567999999999999999988753 4899999999999999999876544 34688999988774 221 46899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++....+ +...+++++.++|+|||++++.+
T Consensus 129 ~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence 999987753 56689999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-15 Score=125.19 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=66.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-----C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 229 (277)
.++.+|||+|||+|..+..++..+.. +++++|+|+.|++.|++++...+. +++++++|+.+ ++++ +
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~-~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------VVDWAAADGIE-WLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHH-HHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-------ceEEEEcchHh-hhhhhhhccC
Confidence 57789999999999999999988654 899999999999999998876421 56777777766 3333 7
Q ss_pred ceeEEecchhhhc------CChhh------------------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGH------LTDDD------------------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~------~~~~d------------------~~~~l~~~~r~LkpGG~lii~e 269 (277)
+||+|+++..+++ ++... +..+++++.++|||||++++.+
T Consensus 101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999755433 22111 1688999999999999955444
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=121.96 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=82.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCC--CCcceeEEEcCCCC-CC--CCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQD-FT--PETG 229 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~--~~~~~~~~~~d~~~-~~--~~~~ 229 (277)
.++.+|||||||+|.++..++..++. .|+|+|+|+.+++.|++++......+.. ...++.++++|+.+ ++ ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 46689999999999999999988765 7999999999999998876532000000 02468999999987 44 5678
Q ss_pred ceeEEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++|.|++...-.+.... -...+++++.++|+|||+|++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 99999855321111000 0147999999999999999986
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=122.69 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++. .++.+...|+.++++++++||+|
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v 152 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDAI 152 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcchhhCCCCCCceeEE
Confidence 367899999999999999888764 337999999999999999875 24788999999888777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+. .+++++.++|||||++++.....
T Consensus 153 ~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 153 IRIYAP---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEESCC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred EEeCCh---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 987652 35899999999999999987543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-15 Score=118.30 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C--CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P--ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~fD 232 (277)
++.+|||+|||+|..+..++..++. |+++|+|+.|++.|++++...++ ++++++.|+.+.. . ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-------GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-------CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-------ceEEEeccHHHHHHhhhccCCceE
Confidence 5679999999999999999887776 99999999999999998865321 5788888887632 1 124799
Q ss_pred EEecchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~e~~ 271 (277)
+|+++.+++ . ....+++.+. ++|+|||++++..+.
T Consensus 113 ~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 113 VAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred EEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 999998775 2 2335666666 999999999997553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=122.59 Aligned_cols=104 Identities=21% Similarity=0.165 Sum_probs=85.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++...++ ..++++.+.|+.+. +++++||
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 164 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKDIYEG-IEEENVD 164 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSCGGGC-CCCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECchhhc-cCCCCcC
Confidence 457789999999999999999987 4 34899999999999999999876544 34589999998865 4557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++. .+ +...+++++.++|+|||++++....
T Consensus 165 ~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 165 HVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp EEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99984 33 3347999999999999999997653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-15 Score=125.54 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=83.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++...++. . +++.++|+.+. +++++||+|++
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~------~-v~~~~~d~~~~-~~~~~fD~Vv~ 190 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV------R-PRFLEGSLEAA-LPFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC------C-CEEEESCHHHH-GGGCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChhhc-CcCCCCCEEEE
Confidence 568999999999999998887777 799999999999999999876543 2 77888887652 23468999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+...+ .+..++.++.++|||||++++++..
T Consensus 191 n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 191 NLYAE-----LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCcHH-----HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 86654 3558999999999999999998654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=123.66 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++...+. +|+++|+|+.+++.|+++....++ .+++++++|+.+. .++++||+|+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~-~~~~~fD~Iv 181 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSA-LAGQQFAMIV 181 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGG-GTTCCEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhh-cccCCccEEE
Confidence 5679999999999999999876543 899999999999999999865433 3688999998764 3346899999
Q ss_pred cch-------------hhhcCCh----------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQW-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++. +++|-|. .....+++++.++|||||++++..
T Consensus 182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 984 3333331 346789999999999999999863
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=120.33 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=83.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-----CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~ 229 (277)
++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...++ ..+++++++|+.+... ..+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 568999999999999999987753 3899999999999999999876554 3468999998865321 115
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+||+|++.... .....+++++.++|+|||++++.+..
T Consensus 133 ~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 133 PFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred CcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 79999987653 25568999999999999988876443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=115.83 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=81.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 229 (277)
..++.+|||+|||+|.++..+++.. . .+|+++|+|+.|++.++++... ..++.++++|+.+.. ..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence 4567899999999999999998773 2 4799999999999999998876 256899999998732 1235
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|++... .......++.++.++|||||++++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999997655 1123345699999999999999987
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=119.49 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (277)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++...++ .++.+..+|+. .++++ .+||+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~-~~~~~~~~fD~ 161 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGS-KGFPPKAPYDV 161 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGG-GCCGGGCCEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCcc-cCCCCCCCccE
Confidence 456789999999999999999877645799999999999999999866443 35888888872 23332 35999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|++..+++++++ ++.+.|||||++++.-+.
T Consensus 162 Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 162 IIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp EEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 999999998872 678899999999997543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=122.05 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=84.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC----C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE----T 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~ 228 (277)
++.+|||+|||+|..+..++...+ .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. .. .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHHHHHHhhhccCC
Confidence 567999999999999999887643 3899999999999999999876554 346899999885542 11 1
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 139 ~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 139 WQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 68999996554 235678999999999999999987654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=119.99 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (277)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|..+. +..++ ||+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGIAAGQRD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHHHTTCCS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHHhccCCC-CCE
Confidence 457999999999999999887643 3899999999999999998865443 34689999988654 33346 999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++... ..+...+++++.++|||||++++.+
T Consensus 130 v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 130 LFMDCD-----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEETT-----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEcCC-----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 998743 2356789999999999999998854
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-15 Score=127.73 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=85.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC------C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------T 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~ 228 (277)
++.+|||||||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.... +
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHhhccCC
Confidence 567999999999999999987653 3899999999999999999876655 35799999998664321 3
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++||+|++... ..+...+++++.++|||||+|++.+..
T Consensus 135 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 135 HQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp SCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 78999998754 235678999999999999999986543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-14 Score=117.03 Aligned_cols=105 Identities=14% Similarity=-0.027 Sum_probs=77.0
Q ss_pred cCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023787 153 ARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (277)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (277)
....++.+|||+|||+|..+..+++... . +|+++|+|+.|++...+.... ..++.++++|+.... ..
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGTTTT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhhhcc
Confidence 3467889999999999999998887633 2 799999999997655444332 246889999987642 12
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.++||+|++..+. + .....++..+.+.|||||+|+++.
T Consensus 144 ~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 144 VENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3689999988653 2 123344566677999999999873
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-14 Score=125.31 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=72.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE-EEcCCCCCC---CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT---PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~~fD 232 (277)
++.+|||+|||||.++..+++.+..+|+++|+|+.|++.+.++.. ++.. ...++..+. ++..+||
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-----------rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-----------RVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-----------TEEEECSCCGGGCCGGGCTTCCCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------ccceecccCceecchhhCCCCCCC
Confidence 567999999999999998888877789999999999998655321 1111 112322222 2334699
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..+++++. .+|.+++|+|||||.+++.
T Consensus 154 ~v~~d~sf~sl~-----~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFISLN-----LILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEEECCSSSCGG-----GTHHHHHHHSCTTCEEEEE
T ss_pred EEEEEeeHhhHH-----HHHHHHHHHcCcCCEEEEE
Confidence 999988887653 7999999999999999986
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=120.26 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=86.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++... + ..++++...|+.+.++++++|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGGGCCCCTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchhhcCCCCCCc
Confidence 457789999999999999999887 3 348999999999999999987542 2 246899999998876666799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|++. .+ +...+++++.++|+|||++++.+..
T Consensus 168 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 168 DGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp EEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999983 34 3447999999999999999998754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=127.22 Aligned_cols=101 Identities=14% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ ..++++..+|+.+ +.+ +||+|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~v~ 256 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFK-SIP--SADAVL 256 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTT-CCC--CCSEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCC-CCC--CceEEE
Confidence 4579999999999999999988765 7999999 788876643 1348999999987 544 499999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCC---CcEEEEEecCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIAR 273 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~e~~~~ 273 (277)
+..++||+++++...++++++++|+| ||++++.|.+.+
T Consensus 257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred EcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 99999999977778999999999999 999999987643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=125.77 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=82.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD 232 (277)
.++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++..... .....+++++.+|+.++.. .+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCcee
Confidence 456899999999999999988653 34899999999999999998731000 0003578999999876542 357999
Q ss_pred EEecchhhhcCChhhH--HHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++....++.+...+ ..++++++++|||||++++...
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999776655443333 5899999999999999999743
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=123.39 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=83.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~V 234 (277)
+.+|||||||+|..+..+++.++. +|++||+++.|++.|++++.... ..+++++.+|..++. .++++||+|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------APRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------TTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------CCceEEEECcHHHHHhhccCCCCCEE
Confidence 349999999999999999985543 79999999999999999986421 357899999987652 345789999
Q ss_pred ecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e 269 (277)
++....+...... ...++++++++|+|||+|++.-
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 9865433222122 1579999999999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=114.29 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=81.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+|||+|||+|.++..+++. ++ .+++++|+|+ |++. .++++.+.|+.+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhc
Confidence 346779999999999999999887 34 4899999998 6531 35788999998865
Q ss_pred -CCCCceeEEecchhhhcCChhh---------HHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d---------~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+++++||+|+++.++++..... ...+++++.++|+|||.+++.+...
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 5667999999998888775321 1589999999999999999986543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-15 Score=117.96 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCc
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 230 (277)
...++.+|||+|||. | ++|+|+.|++.|+++... ++++.++|+.++++ ++++
T Consensus 9 g~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----------EGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TCCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----------TSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----------CcEEEEechhcCccccCCCCC
Confidence 356789999999996 2 399999999999998643 37889999988876 6789
Q ss_pred eeEEecchhhhcC-ChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+|+++.++||+ + +...++++++|+|||||++++.+..
T Consensus 64 fD~V~~~~~l~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 64 FDIILSGLVPGSTTL--HSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp EEEEEECCSTTCCCC--CCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeEEEECChhhhccc--CHHHHHHHHHHHCCCCEEEEEEccc
Confidence 9999999999999 6 5579999999999999999997553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=121.60 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C-C-----C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-----E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~ 227 (277)
++.+|||||||+|..+..++...+ .+|+++|+|+.+++.|++++...++ ..+++++.+|..+. + . +
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHHHHHHhccCC
Confidence 457999999999999999988754 3899999999999999999876554 45799999988654 2 1 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++||+|++... ..+...+++++.++|||||++++.+
T Consensus 154 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 154 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 478999998654 2256789999999999999998754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-14 Score=118.89 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=83.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (277)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...++... ...++++..+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-KIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-SSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-ccCCEEEEECChHhccccc
Confidence 34678999999999999999887754 2799999999999999998765321000 0146889999988754
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...++||+|++..+++++. +++.+.|||||++++.-
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEE
Confidence 4457899999999887754 66789999999999874
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=116.11 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++....++ ..++++...|+.+...++++||+|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChhhcccCCCcccEE
Confidence 456789999999999999999887 55799999999999999998865443 356889999988755345689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++. .+ +...+++++.++|+|||++++...
T Consensus 163 ~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 163 FVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp EEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred EEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 974 33 344789999999999999999765
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-14 Score=121.75 Aligned_cols=103 Identities=10% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C--------
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-------- 225 (277)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..++.+.++|+.+. +
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCSSC
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHHHHHHHhhccc
Confidence 567999999999999999998753 4899999999999999999876544 34588998887542 1
Q ss_pred ------CCC--CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 ------PET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ------~~~--~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++ ++||+|++.... .+...+++++.++|+|||++++.+
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 122 689999988553 356689999999999999999875
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=122.59 Aligned_cols=105 Identities=18% Similarity=0.108 Sum_probs=87.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++..+++ .++.++++|+.+++ ..++||+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~~-~~~~~D~ 189 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDVE-LKDVADR 189 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGCC-CTTCEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHcC-ccCCceE
Confidence 34678999999999999999987753 3799999999999999999877654 45789999998873 3568999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|++.... +...++.++.+.|+|||+++++++..
T Consensus 190 Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9988664 34478999999999999999987754
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-14 Score=121.81 Aligned_cols=100 Identities=17% Similarity=0.023 Sum_probs=68.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~V 234 (277)
.++.+|||||||||.++..+++.+..+|+|+|+|+.|++.++++........ ..++.+.. .++....+...+||++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~D~v 112 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVME---QFNFRNAVLADFEQGRPSFTSIDVS 112 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEEC---SCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccc---cceEEEeCHhHcCcCCCCEEEEEEE
Confidence 3567999999999999999998876689999999999999887643210000 01222222 2333211233456665
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++. ..++++++++|||||.+++.
T Consensus 113 ~~~l----------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 113 FISL----------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp SSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred hhhH----------HHHHHHHHHhccCCCEEEEE
Confidence 5542 37999999999999999986
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-14 Score=116.19 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=83.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++.. . .+|+++|+|+.+++.+++++...+.... ...++.+.+.|+......+++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-SSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-HTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-CCCcEEEEECCcccCcccCCCcC
Confidence 3467899999999999999888764 3 3799999999999999988754221000 01368899999876555557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+++++. +++.++|||||++++...
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 999998887655 478899999999999754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=118.20 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=81.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce---eE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---DV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f---D~ 233 (277)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++....++ ..+++|+++|+.+.. + ++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D~~~~~-~-~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPF-K-EKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGG-G-GGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcchhhc-c-cccCCCCE
Confidence 4569999999999999999887223799999999999999999876554 335899999998732 2 478 99
Q ss_pred Eecchhhh-----------cCCh------hhHHHHHHHHH-hcCCCCcEEEEE
Q 023787 234 IWVQWCIG-----------HLTD------DDFVSFFKRAK-VGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~-----------~~~~------~d~~~~l~~~~-r~LkpGG~lii~ 268 (277)
|+++.... |-+. .+...+++++. +.|+|||++++.
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99973211 2221 12237899999 999999999984
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=117.04 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C-----C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-----E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-----~ 227 (277)
++.+|||||||+|..+..+++..+ .+|+++|+|+.+++.|++++...++ ..+++++.+|..+.. . +
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccCC
Confidence 567999999999999999998754 3899999999999999999876554 457899999876541 1 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++||+|++... ..+...+++.+.++|+|||++++.+
T Consensus 145 ~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 145 EGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 468999997643 2366789999999999999998754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=122.10 Aligned_cols=110 Identities=19% Similarity=0.090 Sum_probs=89.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++..+ + .+++|+|+|+.|++.|++++...++ . ++++.+.|+.+++.+..+||
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~-~i~~~~~D~~~~~~~~~~~D 274 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----S-WIRFLRADARHLPRFFPEVD 274 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----T-TCEEEECCGGGGGGTCCCCS
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----C-ceEEEeCChhhCccccCCCC
Confidence 4567899999999999999988765 2 3799999999999999999887654 2 78999999999876667899
Q ss_pred EEecchhhhcCCh------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++..+..... .....+++++.++|||||.+++...
T Consensus 275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999766443211 1236899999999999999999743
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=119.61 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=85.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++.. ++ .+|+++|+|+.+++.|++++...++ ..++++...|+.+. +++++||
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHc-ccCCccC
Confidence 456789999999999999999887 43 4899999999999999999866443 35788999998776 4557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++. .+ +...+++++.++|+|||++++.+..
T Consensus 184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99984 33 3447999999999999999998653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=120.35 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHhCCC-C-CCCCCCCcceeEEEcCCCCCCCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-N-HMAPDMHKATNFFCVPLQDFTPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (277)
..++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++... + + ..++++.+.|+.+.++++++
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~~~v~~~~~d~~~~~~~~~~ 171 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----PDNWRLVVSDLADSELPDGS 171 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----CTTEEEECSCGGGCCCCTTC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----CCcEEEEECchHhcCCCCCc
Confidence 457789999999999999999875 2 347999999999999999987543 2 1 24689999999888766789
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+|++. ++ +...+++++.++|+|||++++....
T Consensus 172 ~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 172 VDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred eeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9999983 33 3337999999999999999997653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-14 Score=117.73 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=83.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCC--
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET-- 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~-- 228 (277)
++.+|||||||+|..+..++...+ .+|+++|+|+.+++.|++++...++ ..+++++.+|+.+. +.++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 457999999999999999887654 3899999999999999998865444 35689999886442 2222
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||+|++... ..+...+++++.++|+|||++++.+.
T Consensus 147 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 147 PEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp CCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 68999997654 23667899999999999999998654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-14 Score=119.35 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...+... ....++++...|..+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-LDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-HHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-cCCCceEEEECCcccCCCc
Confidence 34678999999999999998887533 379999999999999999875421000 0013588899998762222
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.++||+|++..+++++. +++.+.|||||++++.-.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 36899999999998876 568899999999999744
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-14 Score=125.25 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=85.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC----CCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~fD 232 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++. ..+++++++|+.++... .++||
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHHHHHHHHHhcCCCce
Confidence 567999999999999999998777 7999999999999999998765441 12488999998765321 36899
Q ss_pred EEecchhhhcCC--------hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLT--------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~--------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++........ ..+...+++++.++|+|||++++...+
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 999854311110 235778999999999999998876544
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=112.21 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++.. +++++++|+.+++ ++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEEE
Confidence 4667999999999999998887755579999999999999999864 4788999998864 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+++........+++++.+.+ |+ +++.
T Consensus 116 ~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp ECCCC-------CHHHHHHHHHHE--EE-EEEE
T ss_pred ECCCchhccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 999999987544457899999998 45 4444
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=112.57 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~---~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
.++.+|||+|||+|.++..+++... .+|+|+|+|+.. . ..++.+.++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~--------~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P--------IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C--------CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C--------CCCceEEEccccchhhhhhccc
Confidence 4668999999999999999998764 489999999821 1 245788999998765
Q ss_pred ------------------CCCCceeEEecchhhhcCCh--hh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 ------------------PETGRYDVIWVQWCIGHLTD--DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 ------------------~~~~~fD~Vi~~~~l~~~~~--~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++++||+|++..++++... .+ ...+++++.++|||||.|++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 45579999999887766421 12 12488999999999999998643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-15 Score=124.81 Aligned_cols=107 Identities=13% Similarity=-0.031 Sum_probs=74.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCC---CC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~ 229 (277)
++.+|||+|||+|.++..++...+ .+|+++|+|+.|++.|++++...++ ..+++++++|+.+. +++ ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhhhcccCC
Confidence 567999999999999988887642 4799999999999999999876544 34589999997662 233 25
Q ss_pred ceeEEecchhhhcCCh-------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTD-------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~-------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|+++..+++... +....++.+++++|||||.+.+.
T Consensus 140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 8999999866554330 11224567777777887766554
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=114.94 Aligned_cols=107 Identities=16% Similarity=0.002 Sum_probs=88.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||||||+|.++..++..++. +|+++|+++.+++.|++++..+++ ..++++.++|..+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhccccccccCEE
Confidence 36789999999999999999887654 799999999999999999988766 457999999988765543479999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.+... +-+..++....+.|+++|+|+++-+.
T Consensus 95 viaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 95 TICGMGG----RLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred EEeCCch----HHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 8766533 25668999999999999999998654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-14 Score=122.08 Aligned_cols=107 Identities=15% Similarity=0.041 Sum_probs=75.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE--EcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++. .+|+|||+|+ |+..+++. .........++.++ ++|+.+++ +++||
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhh----hhhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence 456789999999999999988766 5699999998 54322211 10000011268888 88998876 57899
Q ss_pred EEecchhhhcCChh--h---HHHHHHHHHhcCCCCc--EEEEEecC
Q 023787 233 VIWVQWCIGHLTDD--D---FVSFFKRAKVGLKPGG--FFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~--d---~~~~l~~~~r~LkpGG--~lii~e~~ 271 (277)
+|+|..+ ++.+.. + ...++..+.++||||| .|++....
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999877 444321 1 1137899999999999 99987654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-14 Score=118.64 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=77.7
Q ss_pred CCccEEEeeccccHHHHHHHHh----CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CC-C
Q 023787 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~----~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~-~ 227 (277)
++.+|||||||+|..+..+++. +. .+|+++|+|+.|++.|+. . ..+++++++|+.+. +. .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------~~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------MENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------CTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------CCceEEEECcchhHHHHHhhc
Confidence 4579999999999999988876 23 389999999999988872 1 24689999999885 43 2
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHh-cCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~e 269 (277)
..+||+|++... |. +...++.++.+ +|||||++++.+
T Consensus 150 ~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 EMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred cCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 347999998665 32 56689999997 999999999965
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=123.02 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCC--CCCCCCCCcceeEEEcCCCCC--CCCCCc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF--TPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 230 (277)
..+.+|||||||+|..+..+++... .+|+++|+|+.|++.|++++... ++ ...+++++.+|+.++ ..++++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEECCHHHHHHhccCCC
Confidence 3568999999999999999886543 48999999999999999987531 11 025689999997664 123478
Q ss_pred eeEEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
||+|++.......+... ...+++++.++|+|||+|++.
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999865421111112 368999999999999999996
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=114.14 Aligned_cols=106 Identities=16% Similarity=0.026 Sum_probs=85.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
+++.+|||||||+|.++..++..++. +|+++|+++.+++.|++++..+++ ..++++..+|..+...+..+||+|
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhhhcccCcCCCEE
Confidence 36689999999999999999887654 799999999999999999988766 357999999985422221269999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.+.- .+-+..++..+...|+|+|+|+++-+
T Consensus 89 viaG~G----g~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 89 TIAGMG----GRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEEC----HHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEcCCC----hHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 976542 22466899999999999999999755
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=121.06 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=85.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...++ .++.+++.|+.+++..+++||
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcccccccCC
Confidence 45778999999999999999987653 3799999999999999999876543 368899999887754456899
Q ss_pred EEecch------hhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQW------CIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~------~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++.. ++++.++ .+ ...+++++.++|||||+++++..
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 999742 2333221 11 25899999999999999999753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=121.61 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=80.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC--CCC---CCCCCcceeEEEcCCCCCCCCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHM---APDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~---~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
.+.+|||||||+|..+..+++....+|+++|+++.+++.|++++ .. ++. ......+++++.+|+.++...+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 56799999999999999988763448999999999999999998 32 110 0001357899999875531114689
Q ss_pred eEEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|++....+..+... ...+++++.++|+|||++++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999876532222122 257999999999999999986
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=114.67 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=88.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||||||+|.++..++..++. +|+++|+++.+++.|++++..+++ ..++++.++|..+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~~~~~~~~~D~I 94 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLAVIEKKDAIDTI 94 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhhccCccccccEE
Confidence 36689999999999999999887654 799999999999999999987766 456899999987765443369999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.+..- +-+..++.+..+.|+++|+|+++-+.
T Consensus 95 viagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 95 VIAGMGG----TLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred EEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 8765432 35668999999999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-14 Score=116.86 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC----C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE----T 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~ 228 (277)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. .. .
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~~~ 143 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGEA 143 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTCT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcCCC
Confidence 567999999999999998887643 3899999999999999999876544 357899998875431 11 1
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||+|++... ..+...+++++.++|+|||++++.+.
T Consensus 144 ~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 144 GTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp TCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 68999998654 23566899999999999999998654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=119.06 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=84.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...+.. ....+++++.+|+.++. ..+++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCceE
Confidence 356899999999999999888654 248999999999999999998642110 01357899999886642 22478999
Q ss_pred EecchhhhcCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e 269 (277)
|++....+..+...+ ..+++.++++|+|||++++.-
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 998654333332333 589999999999999999873
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=119.70 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=76.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE--EcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..++++. ........++.++ ++|+.+++ +++||
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKP----RLVETFGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCC----CCCCCTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhch----hhhhhcCCCeEEEeccCcHhhCC--CCCcC
Confidence 456789999999999999988866 5799999998 643332211 1000112268888 88988865 57899
Q ss_pred EEecchhhhcCChh--h---HHHHHHHHHhcCCCCc--EEEEEecC
Q 023787 233 VIWVQWCIGHLTDD--D---FVSFFKRAKVGLKPGG--FFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~--d---~~~~l~~~~r~LkpGG--~lii~e~~ 271 (277)
+|+|..+ ++.+.. + ...+++.+.++||||| .|++....
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999877 443321 1 1137899999999999 99986544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=118.77 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCC--CCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
.+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++... ++ ...+++++.+|..++ +..+++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCee
Confidence 56899999999999999888663 358999999999999999987421 11 135789999998664 22347899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++....+..+... ...++++++++|+|||++++.
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999865543222111 247999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=121.37 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=83.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCC--CC-CCCCCCCcceeEEEcCCCCC-CCCCCc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--EN-HMAPDMHKATNFFCVPLQDF-TPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~-~~~~~~~~~~~~~~~d~~~~-~~~~~~ 230 (277)
..+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.. .+ + ...+++++.+|+.++ +..+++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF----DDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG----GCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc----cCCceEEEEchHHHHHHhcCCC
Confidence 356899999999999999888653 34899999999999999998742 11 0 025689999998764 223578
Q ss_pred eeEEecchhhhc---CChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGH---LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~---~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
||+|++....+. -+... ...++++++++|||||++++.
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 999999766544 21112 368999999999999999986
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=120.89 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~V 234 (277)
.+.+|||||||+|..+..+++... .+|+++|+|+.+++.|++++..... .....+++++.+|+.++ +..+++||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 557999999999999998886543 4899999999999999999864210 00135789999987653 2234789999
Q ss_pred ecchhhhcCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e 269 (277)
++....+.-+...+ ..+++++.++|+|||++++..
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98654322222222 689999999999999999864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=120.79 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=80.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCC--CCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (277)
..+.+|||||||+|..+..+++... .+|+++|+|+.+++.|++++.. .++ ...+++++.+|+.++ +..+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCcEEEEECcHHHHHhhCCCCc
Confidence 3568999999999999999886643 4899999999999999998743 111 025689999987653 2234789
Q ss_pred eEEecchhhhcCChh--hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|++....+..+.. ....+++++.++|+|||++++..
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999986554322211 12478999999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=117.24 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=80.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCC----CCCC-CCCcceeEEEcCCCCC--C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPEN----HMAP-DMHKATNFFCVPLQDF--T 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~----~~~~-~~~~~~~~~~~d~~~~--~ 225 (277)
..++.+|||+|||+|.++..++.. ++ .+|+++|+|+.+++.|++++...+ +... ....++++..+|+.+. +
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 457789999999999999999877 44 489999999999999999876311 0000 0024689999999886 3
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++++||+|++... +...++.++.++|||||++++...
T Consensus 183 ~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 183 IKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp -----EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred cCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 45578999998543 122488999999999999998754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=107.82 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=82.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...++ +++++++|+.+++ ++||+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~---~~~D~v~ 117 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDVSEFN---SRVDIVI 117 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCGGGCC---CCCSEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECchHHcC---CCCCEEE
Confidence 46789999999999999999877666799999999999999999876432 5889999998864 4899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
++..+++........+++++.+.+ ||.+++
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred EcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 999888776445567899999998 555443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=123.66 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=87.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++ ..+++++++|+.++.. +.++||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHHHHHHhhCCCCC
Confidence 5689999999999999999877666899999999999999999877654 2378999999876532 246899
Q ss_pred EEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++.......+. .+...++.++.++|+|||+++++.+.
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9998643322111 35678999999999999999988654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-13 Score=119.70 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=82.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCC-CCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~fD~ 233 (277)
++.+|||+| |+|.++..++..++ .+|+++|+|+.|++.|++++...++ . +++++++|+.+ ++. .+++||+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~-~v~~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----E-DIEIFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----C-CEEEECCCTTSCCCTTTSSCBSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----C-CEEEEEChhhhhchhhccCCccE
Confidence 568999999 99999999988776 5899999999999999999876543 2 68999999988 553 3468999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
|+++..++.. ....+++++.++|||||.+
T Consensus 245 Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 245 FITDPPETLE---AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp EEECCCSSHH---HHHHHHHHHHHTBCSTTCE
T ss_pred EEECCCCchH---HHHHHHHHHHHHcccCCeE
Confidence 9998765442 2478999999999999954
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-13 Score=125.37 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=86.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCc-ceeEEEcCCCCCCC----CCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~f 231 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++..+++ .. +++|+++|+.++.. ...+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhCCCc
Confidence 5679999999999999999876776899999999999999999887655 22 78999999876421 23589
Q ss_pred eEEecchhh-----hcCC--hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 232 DVIWVQWCI-----GHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 232 D~Vi~~~~l-----~~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+|++.... .+.. ..++..++..+.++|+|||+++++.+..
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999986443 1222 1245668889999999999999986643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=120.05 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.... +.....+++++++|+.++. ..+++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 56799999999999999888653 3489999999999999999986520 0000257899999876532 224689999
Q ss_pred ecchhhhcCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e 269 (277)
++...-..-+...+ ..+++++.++|+|||++++.-
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98653211111222 689999999999999999963
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=116.25 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=79.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC--CCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+|||||||+|..+..+++.. .+|+++|+++.|++.|++++... ++ ...+++++.+|..++. ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~----~~~rv~~~~~D~~~~~---~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVK----NNKNFTHAKQLLDLDI---KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHH----TCTTEEEESSGGGSCC---CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhcccc----CCCeEEEEechHHHHH---hhCCEE
Confidence 56799999999999999888774 78999999999999999876431 11 0356888989987765 689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++.. + +...+++.+.+.|+|||++++..
T Consensus 144 i~d~-----~--dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 144 FCLQ-----E--PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EESS-----C--CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EECC-----C--ChHHHHHHHHHhcCCCcEEEEEc
Confidence 9863 2 22259999999999999999863
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-13 Score=110.96 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
.++....++...+.. .++.+|||||||+|.++..++ ....|+++|+++.|++.+++++... ..+
T Consensus 89 rLp~ld~fY~~i~~~-------~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~ 152 (253)
T 3frh_A 89 RLAELDTLYDFIFSA-------ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWD 152 (253)
T ss_dssp HGGGHHHHHHHHTSS-------CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCE
T ss_pred HhhhHHHHHHHHhcC-------CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCC
Confidence 355555555554432 367899999999999999776 4448999999999999999997654 356
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+.+.|+...+++ ++||+|++.-++||+.+.+....+ ++...|+++|+++-.+
T Consensus 153 ~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 153 FTFALQDVLCAPPA-EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EEEEECCTTTSCCC-CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred ceEEEeecccCCCC-CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 78899999887766 599999999999999766555555 8888999999988776
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=116.93 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=84.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC----CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~ 228 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ .++++++.|+.+++. ..
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHHHHTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhhhhcc
Confidence 45678999999999999999987532 4799999999999999999876543 368899999877643 24
Q ss_pred CceeEEecchh------hhcC---C-------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWC------IGHL---T-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~------l~~~---~-------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||+|++... +++- . ......+++++.++|||||+++++..
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 68999998632 2110 0 02346899999999999999999753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-13 Score=114.17 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=98.0
Q ss_pred ccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCC
Q 023787 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (277)
Q Consensus 133 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~ 211 (277)
..++....|+..++... .++.+|||||||+|-++..++...+. +|+++|+++.|++.+++++...+.
T Consensus 114 eRLp~lD~fY~~i~~~i------~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~------ 181 (281)
T 3lcv_B 114 ERLPHLDEFYRELFRHL------PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV------ 181 (281)
T ss_dssp HHGGGHHHHHHHHGGGS------CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC------
T ss_pred HHhHhHHHHHHHHHhcc------CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC------
Confidence 34556666666655422 34779999999999999988765444 899999999999999999876543
Q ss_pred cceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...+.+.|+..-+++ ++||+|++.-+++|+.++.....+ ++...|+|+|+++-.+.
T Consensus 182 -~~~~~v~D~~~~~p~-~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 182 -PHRTNVADLLEDRLD-EPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp -CEEEEECCTTTSCCC-SCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred -CceEEEeeecccCCC-CCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 477888888766544 789999999999999866655666 89999999999998776
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=118.34 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCC--CCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
.+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.. .++ ...+++++.+|+.++ +..+++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCce
Confidence 45799999999999999988663 34899999999999999998742 111 025689999987653 22346899
Q ss_pred EEecchhhhcCCh-h--hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-~--d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++...-+.+.. . ....+++++.++|+|||++++.
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998543221211 1 1258999999999999999996
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-13 Score=116.27 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++ ..++.++++|..++... +.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~~~~~-~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHHhccc-cCCCEEE
Confidence 46789999999999999999988777899999999999999999988776 45789999999888654 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++... .-..++..+.++|||||++.+.+++.
T Consensus 198 ~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCCC------cHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 77542 12257888889999999998876654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=117.29 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=87.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...++ .++.+.+.|+.+++ +++++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSSSSCSSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcchhhccCC
Confidence 45778999999999999999988653 3799999999999999999876543 46889999998876 44478
Q ss_pred eeEEec------chhhhcCChh-------hH-------HHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWV------QWCIGHLTDD-------DF-------VSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~------~~~l~~~~~~-------d~-------~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|++ ..++++.++. +. ..+++++.++|||||++++++.
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999995 3345544421 11 5789999999999999998764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-13 Score=130.48 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=88.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++ +...++||+|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCccEEE
Confidence 56799999999999999988877778999999999999999998876651 14689999998764 23347899999
Q ss_pred cchhhh--------cCC-hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~--------~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..... .+. ..+...++..+.++|+|||+|+++.+.
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 865321 011 236778999999999999999987664
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=112.94 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.+. +|+++|+|+.|++.+++++...+. ..+++++++|+.+++++ +||+|
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~fD~v 97 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 97 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcceecccch--hhcEE
Confidence 45678999999999999999998865 699999999999999999875433 35799999999887654 79999
Q ss_pred ecchhhhcCChhhHHHHH--------------HHH--HhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFF--------------KRA--KVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l--------------~~~--~r~LkpGG~li 266 (277)
+++..++..+ +-+..++ +++ +++|+|||.++
T Consensus 98 v~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9976554322 1122222 223 36899999764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-13 Score=121.05 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=86.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (277)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++..+++ .+++++++|+.++.. ...+||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCCee
Confidence 5679999999999999999877 55799999999999999999877654 348899999876532 146899
Q ss_pred EEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++.......+. .....++.++.++|+|||+++++.+.
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9998643221111 35678999999999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=106.70 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC----------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE-EcCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDF 224 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~----------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~d~~~~ 224 (277)
.++.+|||+|||+|.++..+++... .+|+++|+|+.+ . ..++.+. .+|+.+.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~--------~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P--------LEGATFLCPADVTDP 83 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C--------CTTCEEECSCCTTSH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c--------CCCCeEEEeccCCCH
Confidence 4678999999999999999998743 579999999731 0 1347778 7887654
Q ss_pred C--------CCCCceeEEecchhhhcC----Chhh-----HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 225 T--------PETGRYDVIWVQWCIGHL----TDDD-----FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 225 ~--------~~~~~fD~Vi~~~~l~~~----~~~d-----~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
. +++++||+|++..+++.. .+.. ...+++++.++|||||+|++....
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 3 233589999986654432 2110 147899999999999999998653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-13 Score=119.56 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=87.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++.. ...+||
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~~~~~~~~~~fD 295 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHhcCCCCC
Confidence 56799999999999999998877668999999999999999998765430 1268999999876532 136899
Q ss_pred EEecchhhhcCC-------hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 233 VIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 233 ~Vi~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|++........ ......++.++.+.|+|||+++++.+..
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999875321110 1367789999999999999999986643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=115.08 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=83.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.|++++..+++ ..++.++++|+.++. ++||+|++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc---CCCcEEEE
Confidence 678999999999999998 75 566899999999999999999887654 346899999998876 68999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
..... ...++..+.++|+|||++++.++..
T Consensus 265 dpP~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPKF------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTTT------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcHh------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 64321 1268999999999999999986643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=115.23 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=83.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++...++ ..++++.++|+.+++.++++||+|
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~~~~~~~~~fD~I 290 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDATQLSQYVDSVDFA 290 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGGGGGGTCSCEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCcccCCcCEE
Confidence 36689999999999999998877653 799999999999999999877654 357999999999988777899999
Q ss_pred ecchhhhcCC-----hhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLT-----DDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~-----~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++..+..-. -.+ ...+++++.++| +|+.++++
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 9987644321 112 367889999988 44444443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=117.32 Aligned_cols=108 Identities=11% Similarity=-0.042 Sum_probs=82.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++..+++ . ..+.++|+.++. ...+.||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~-----~--~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL-----R--VDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC-----C--CEEEESCHHHHHHTCCCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC-----C--CcEEEccHHHHHHHhcCCCCEEE
Confidence 5789999999999999999887776 99999999999999999876654 1 345678876642 1124599999
Q ss_pred cchhhhcCC-------hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+......-. ..+...++..+.++|+|||++++..+..
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 865421111 1245689999999999999999776543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=104.67 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=72.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------- 227 (277)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.. . ..++.++++|+.+....
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~--------~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------E--------IAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------C--------CTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------c--------CCCeEEEEccccCHHHHHHHHHHhh
Confidence 46789999999999999988876 4479999999631 1 24689999999886411
Q ss_pred ---CCceeEEecchhhhcCC---------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 ---TGRYDVIWVQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ---~~~fD~Vi~~~~l~~~~---------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.++||+|++........ ......+++.+.++|||||.|++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 14899999865322111 11245789999999999999998643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=115.15 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~ 233 (277)
++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.+++.|+.+++. .+++||.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhccccCCE
Confidence 678999999999999999988743 3799999999999999999876543 368889999987653 3468999
Q ss_pred Eecc------hhhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++. .++.+.++ ++ ...+|.++.++|||||+|+++..
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 9972 23333221 11 34689999999999999998753
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.7e-12 Score=112.40 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (277)
.++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.++...+. ++.+.++|..... ..+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~~~D~l~~~-~~~ 200 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDGLANL-LVD 200 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCTTSCC-CCC
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEEECCCCCcc-ccC
Confidence 3568999999999999998887653 4799999999999999998754322 4678888876533 346
Q ss_pred ceeEEecchhhhcCChhhH----------------HHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDF----------------VSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~----------------~~~l~~~~r~LkpGG~lii~e 269 (277)
+||+|+++..+++++.++. ..++..+.+.|+|||++++.-
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999998877653332 258999999999999998875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=113.74 Aligned_cols=104 Identities=10% Similarity=-0.026 Sum_probs=72.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC----CHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~----S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~ 229 (277)
..++.+|||+|||+|.++..+++. .+|+++|+ ++.+++.++ ... . ...++.++++ |+..++ +.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~--~----~~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MST--Y----GWNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCS--T----TGGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhh--c----CCCCeEEEeccccccCC--cC
Confidence 346789999999999999988866 46999999 565442110 011 0 0246888888 887764 46
Q ss_pred ceeEEecchhhh---cCChhh-HHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIG---HLTDDD-FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~---~~~~~d-~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+||+|+|..+++ +..+.. ...+|..+.++|||||.|++...
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 899999977653 211111 12578999999999999998644
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.7e-12 Score=114.19 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=86.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...+. ++.+++.|+.+++ +++++|
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHHHHTTCCE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhhchhhcccCCC
Confidence 45778999999999999999998765 3899999999999999999876543 3678899998875 445789
Q ss_pred eEEecc------hhhhcCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~------~~l~~~~~~-------d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|++. .++++.++. + ...+++++.+.|||||+++++..
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999952 344444421 1 14789999999999999999763
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=110.99 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++..+++ . ++|+++|+.++... +||+|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~~~~~~--~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDREVSVK--GFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTTTCCCT--TCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChHHcCcc--CCCEEEE
Confidence 5679999999999999988866 44799999999999999999876543 3 88999999887533 8999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
......+. . .+++.+. .|+|||+++++-|
T Consensus 360 dPPr~g~~--~--~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 360 DPPRAGLH--P--RLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp CCCTTCSC--H--HHHHHHH-HHCCSEEEEEESC
T ss_pred cCCccchH--H--HHHHHHH-hcCCCcEEEEECC
Confidence 76543332 1 3555554 4899999999854
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-12 Score=116.41 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ . +.+.+.|+.++. ..+++|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHHHCSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhhccccC
Confidence 45778999999999999999987754 3799999999999999999876554 3 788888877654 234789
Q ss_pred eEEecc------hhhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|++. .++..-++ ++ ...+++++.++|||||+|+++.
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999952 22332221 11 2679999999999999999874
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=110.23 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (277)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..+++ .+++|+++|+.+. ++.+++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhhhhhhhcCC
Confidence 346679999999999999988866 45799999999999999999876544 3799999999873 234568
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|+++...... ..+++.+.+ ++|+++++++.+
T Consensus 357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc~ 390 (433)
T 1uwv_A 357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCN 390 (433)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESC
T ss_pred CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEECC
Confidence 9999987654332 134554443 789999998754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-11 Score=100.19 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (277)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.+++++.. ..+++++++|+.++++++ ..| .
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~-~ 97 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSY-K 97 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCC-E
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCe-E
Confidence 4567899999999999999999887 4699999999999999999864 246899999999887663 456 4
Q ss_pred Eecchh
Q 023787 234 IWVQWC 239 (277)
Q Consensus 234 Vi~~~~ 239 (277)
|+++..
T Consensus 98 vv~nlP 103 (244)
T 1qam_A 98 IFGNIP 103 (244)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 555433
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=105.42 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.+++++...+. .+++++++|+.+++++ +||+|
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~------~~v~~~~~D~~~~~~~--~~D~V 110 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY------NNLEVYEGDAIKTVFP--KFDVC 110 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC------CCEEC----CCSSCCC--CCSEE
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECchhhCCcc--cCCEE
Confidence 4467899999999999999888664 4799999999999999998754322 4688899999887653 79999
Q ss_pred ecchhhhcCChhhHHHHH---------------HHHHhcCCCCc
Q 023787 235 WVQWCIGHLTDDDFVSFF---------------KRAKVGLKPGG 263 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l---------------~~~~r~LkpGG 263 (277)
+++...+. ..+.+..++ ..+.|+++|+|
T Consensus 111 v~n~py~~-~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 111 TANIPYKI-SSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEECCGGG-HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEcCCccc-ccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 99776553 333334444 34678888877
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=112.94 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=83.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
..++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...++ .++.+.+.|..++. ..+++|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhhhccccC
Confidence 45778999999999999999987633 3799999999999999999877654 35788888877654 224789
Q ss_pred eEEecch------hhhcCCh-------h-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQW------CIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~------~l~~~~~-------~-------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|++.. ++..-++ + ....++.++.++|||||+|+++.
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999642 2222111 0 12378999999999999999874
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=101.18 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=67.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.. .+|+++|+++.|++.+++++.. ..+++++++|+.++++++.+||.|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEE
Confidence 4567899999999999999999874 4799999999999999998863 357999999999988776789999
Q ss_pred ecchhhh
Q 023787 235 WVQWCIG 241 (277)
Q Consensus 235 i~~~~l~ 241 (277)
+++..++
T Consensus 119 v~NlPy~ 125 (295)
T 3gru_A 119 VANLPYQ 125 (295)
T ss_dssp EEECCGG
T ss_pred EEeCccc
Confidence 9886654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=107.49 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=83.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--------------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d 220 (277)
+.++.+|||.|||+|.++..+++.. ...++|+|+++.+++.|+.++...+.. ..+..+.++|
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----~~~~~i~~gD 244 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 244 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----cCCCCEeeCC
Confidence 4466799999999999998877542 236999999999999999887544331 0156788888
Q ss_pred CCCCCCCCCceeEEecchhhhcCChhh---------------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 221 LQDFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 221 ~~~~~~~~~~fD~Vi~~~~l~~~~~~d---------------~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+.. .+||+|+++..+.+....+ ...+++.+.+.|||||+++++-
T Consensus 245 ~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 245 SLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp TTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 8776544 4899999998776543211 2378999999999999998764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-12 Score=109.76 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=77.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (277)
..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.++++... ..+++++++|+.+++++. ++| .
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEE-E
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhhcCcccCCCc-E
Confidence 4467899999999999999999886 5799999999999998877652 357899999999987663 689 6
Q ss_pred EecchhhhcCChhhH----------HHHH----HHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDF----------VSFF----KRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~----------~~~l----~~~~r~LkpGG~lii~ 268 (277)
|+++...+ .+.... ..++ +.+.|+|+|||.+++.
T Consensus 97 vv~n~Py~-~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 97 IVGNIPYH-LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp EEEECCSS-SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred EEEeCCcc-ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 66653321 111111 1334 6699999999988764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=106.10 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=74.5
Q ss_pred CCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+|||+|||+|.++..++++. ..+++|+|+++.+++.| .+++++++|+.+.... ++||+|
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~~-~~fD~I 102 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDLI 102 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCcc-CCCCEE
Confidence 45699999999999999888763 34899999999998766 2478889998876543 689999
Q ss_pred ecchhhhc----------CChhh-----------------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGH----------LTDDD-----------------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~----------~~~~d-----------------~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++..+.. ++++. ...+++.+.++|+|||++++.-
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99744322 22211 2267999999999999998874
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.4e-10 Score=100.03 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=86.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (277)
..++..+||.+||+|.++...+.... .+|+|+|+|+.|++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 45678999999999999887775432 249999999999999
Q ss_pred HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhc-C-ChhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023787 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-L-TDDDFVSFFKRAKVGLKP--GGFFVLKE 269 (277)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~-~-~~~d~~~~l~~~~r~Lkp--GG~lii~e 269 (277)
|++++...++ ...+++.+.|+.+++.+ .+||+|+++..+.. + ..+++..+++.+.+.||+ ||.+++.-
T Consensus 272 Ar~Na~~~gl-----~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 272 ARKNAREVGL-----EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHHHHHTTC-----TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 9999987665 34689999999998765 48999999966432 2 235677888888888877 88887763
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=102.68 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (277)
..++..|||.+||+|.++...+.... .+|+|+|+|+.|++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 45678999999999999887775432 249999999999999
Q ss_pred HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhc-CC-hhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023787 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKE 269 (277)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~-~~-~~d~~~~l~~~~r~Lkp--GG~lii~e 269 (277)
|++++...++ ..++++.+.|+.+++.+ .+||+|+++..+.. +. .+++..+.+.+.+.||+ ||.+++.-
T Consensus 279 Ar~Na~~~gl-----~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 279 AKQNAVEAGL-----GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHHTTC-----TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999887665 34689999999988765 58999999966431 11 23566677777777766 88877753
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=101.97 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=85.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (277)
..++.+|||.+||+|.++..++.... .+|+|+|+++.|++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 45678999999999999988776532 259999999999999
Q ss_pred HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhc-CC-hhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023787 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKE 269 (277)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~-~~-~~d~~~~l~~~~r~Lkp--GG~lii~e 269 (277)
|++++...++ ..+++|.+.|+.+++.+ .+||+|+++..+.. +. .+++..+.+++.+.||+ ||.+++..
T Consensus 273 Ar~Na~~~gl-----~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 273 ARENAEIAGV-----DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHHTC-----GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999877655 34799999999988765 58999999877532 22 24567788888877776 88777753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=97.94 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=68.8
Q ss_pred CCCCccEEEeec------cccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE-EEcCCCCCC
Q 023787 155 NNQHLVALDCGS------GIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT 225 (277)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 225 (277)
..++.+|||+|| |+|. ..+++... .+|+|+|+|+. + .++++ +++|+.+++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATVH 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccCC
Confidence 557789999999 5576 33444443 37999999987 1 23778 999998876
Q ss_pred CCCCceeEEecchhhhc--------CC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 PETGRYDVIWVQWCIGH--------LT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~--------~~-~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++ ++||+|+++...+. .. ...+..+++++.++|||||+|++...
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 55 68999998754221 11 11356899999999999999999654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=94.11 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (277)
..++ +|||||||+|.++..+++.+. +|+++|+++.|++.+++++.. .+++++++|+.++++++ ..+|.
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSCGGGSCTTEE
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCChhhccCccE
Confidence 4466 999999999999999998764 699999999999999999863 46899999998887653 26899
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+++...+ ++.+-+..++.. ..-+.+++++.
T Consensus 114 iv~NlPy~-iss~il~~ll~~---~~~~~~~lm~Q 144 (271)
T 3fut_A 114 LVANLPYH-IATPLVTRLLKT---GRFARLVFLVQ 144 (271)
T ss_dssp EEEEECSS-CCHHHHHHHHHH---CCEEEEEEEEE
T ss_pred EEecCccc-ccHHHHHHHhcC---CCCCEEEEEee
Confidence 98887654 443344445444 12235555554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.1e-10 Score=94.04 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC----CCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~ 230 (277)
..++.+|||||||+|.++..+++.+ .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~ 97 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKP 97 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCC
Confidence 4567899999999999999998776 5799999999999999999865 35789999999998753 257
Q ss_pred eeEEecchhh
Q 023787 231 YDVIWVQWCI 240 (277)
Q Consensus 231 fD~Vi~~~~l 240 (277)
|| |+++...
T Consensus 98 ~~-vv~NlPY 106 (255)
T 3tqs_A 98 LR-VVGNLPY 106 (255)
T ss_dssp EE-EEEECCH
T ss_pred eE-EEecCCc
Confidence 88 6666554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=93.90 Aligned_cols=108 Identities=10% Similarity=-0.039 Sum_probs=78.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC---C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~ 229 (277)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++ .++.+++.|+.++.... .
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCccccccC
Confidence 4577899999999999999988763 24799999999999999999876554 46889999988765332 4
Q ss_pred ceeEEecc------hhhhcCCh---------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQ------WCIGHLTD---------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~------~~l~~~~~---------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
+||.|++. .++..-++ ++ ...+|..+.++|+ ||+++.+.
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 79999962 22222111 11 1346888888887 99888763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-10 Score=98.08 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCH-------HHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 226 (277)
.++.+|||+|||+|..+..++..+. +|+++|+|+ .+++.|+++...+++ ..+++++++|+.++. +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHHHHHhh
Confidence 4567999999999999999887755 699999999 999999887654322 234899999987752 2
Q ss_pred CC--CceeEEecchhhhcCC------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ET--GRYDVIWVQWCIGHLT------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~--~~fD~Vi~~~~l~~~~------------------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++ ++||+|++...+.+.. +.+...++..+.++.+. .+++..+
T Consensus 156 ~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp HHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred hccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 33 5899999976554421 12345667777777643 5666544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-10 Score=101.69 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=80.8
Q ss_pred CCccEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc-eeEEEcCCCCCCC--CCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFTP--ETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~--~~~~f 231 (277)
++.+|||++||+|.++..++.+ +..+|+++|+++.+++.++++++.+++ ..+ ++++++|+.++.. ..++|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHHHHHHhhCCCC
Confidence 5689999999999999998875 335899999999999999999988765 234 8889988755421 13579
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|++.. . . ....++..+.+.|+|||+++++-
T Consensus 127 D~V~lDP-~-g----~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP-F-G----TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECC-S-S----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECC-C-c----CHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999876 1 1 12368889999999999888864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=98.24 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=72.3
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCC-------
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET------- 228 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~------- 228 (277)
+.+|||+|||+|.++..++. ...+|+++|+|+.+++.|++++..+++ .+++|+++|+.++. ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHHHHHHHhhccccccc
Confidence 46899999999999997775 555799999999999999999876654 46899999886642 111
Q ss_pred -------CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 -------GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 -------~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+||+|++...-.. +..++.+.|+++|.+++..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEE
T ss_pred cccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEE
Confidence 37999997644221 2344555666888777764
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-10 Score=102.03 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=78.4
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCC---------------CCCCCCCCcceeEEEcC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE---------------NHMAPDMHKATNFFCVP 220 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~---------------~~~~~~~~~~~~~~~~d 220 (277)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++..+ ++ .+++++++|
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~D 120 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHDD 120 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEESC
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcCc
Confidence 45799999999999999999874 347999999999999999998765 32 238888998
Q ss_pred CCCCCC-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 221 LQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 221 ~~~~~~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.++.. ..++||+|++.. .. ....++..+.+.|||||+++++
T Consensus 121 a~~~~~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 121 ANRLMAERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHHHHHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 866431 135799999543 21 1237889999999999998886
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=102.30 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=78.7
Q ss_pred CCccEEEeeccccHHHHHHHH---hCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLI---RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
....|||+|||+|.++...++ +... +|++||-|+ |...+++....+++ ..+++++.++++++..+ .++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~eev~LP-EKV 429 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMREWVAP-EKA 429 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTTTCCCS-SCE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCcceeccCC-ccc
Confidence 446899999999988444433 3333 689999997 66778887777666 57899999999999877 699
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
|+|||-+.=..+-.+-....+....|.|||||+++
T Consensus 430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99998764333333344578888899999999975
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-09 Score=89.52 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC--Ccee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD 232 (277)
..++.+|||||||+|.++..+++.+..+|+++|+++.|++.++++ . ..+++++++|+.++++++ +.|
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~- 97 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL- 97 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE-
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc-
Confidence 446789999999999999999877546899999999999999877 2 256899999999987653 133
Q ss_pred EEecchhh
Q 023787 233 VIWVQWCI 240 (277)
Q Consensus 233 ~Vi~~~~l 240 (277)
.|+++...
T Consensus 98 ~vv~NlPy 105 (249)
T 3ftd_A 98 KVVGNLPY 105 (249)
T ss_dssp EEEEECCT
T ss_pred EEEEECch
Confidence 55555443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=91.52 Aligned_cols=106 Identities=12% Similarity=-0.013 Sum_probs=68.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..++.. ....++++|++..+... .........++.++..++....+++++||+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~--------pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK--------PMNVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC--------CCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc--------ccccCcCCCCeEEEeccceehhcCCCCccE
Confidence 457789999999999999977654 33478899987433100 000000112445556665545566679999
Q ss_pred Eecchhhh----cCChhhHHHHHHHHHhcCCCC-cEEEEE
Q 023787 234 IWVQWCIG----HLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~----~~~~~d~~~~l~~~~r~LkpG-G~lii~ 268 (277)
|+|..+.+ .........+++.+.++|+|| |.|++.
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99987665 111111223578889999999 999985
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=88.60 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=82.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
.+.+.+||-||.|.|..++.+++.. ..+|+.||+++.+++.+++.+..... +....++++.+..|...+. ...++||
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 3467899999999999999988653 34899999999999999998742100 0011467999999988774 3457999
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.-..-..-+... -..+++.+++.|+|||+++..
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 999543211000000 137999999999999999985
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=89.70 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=74.0
Q ss_pred CccEEEeeccccHHHHHHHHh-----------------CCC-cEEEEeCC-----------HHHHHHHHHHhCCCCCCCC
Q 023787 158 HLVALDCGSGIGRITKNLLIR-----------------YFN-EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~-----------------~~~-~v~gvD~S-----------~~~l~~a~~~~~~~~~~~~ 208 (277)
..+|+|+||++|..|..+... .+. +|...|+. +.+.+.+++....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 689999999999999987765 112 68888987 6666655443221
Q ss_pred CCCcceeEEEcCCCC---CCCCCCceeEEecchhhhcCChh-------------------------------------hH
Q 023787 209 DMHKATNFFCVPLQD---FTPETGRYDVIWVQWCIGHLTDD-------------------------------------DF 248 (277)
Q Consensus 209 ~~~~~~~~~~~d~~~---~~~~~~~fD~Vi~~~~l~~~~~~-------------------------------------d~ 248 (277)
..+.-|..+.... -.+++++||+|+++.+||++.+. |+
T Consensus 127 --~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~ 204 (384)
T 2efj_A 127 --KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF 204 (384)
T ss_dssp --CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence 0123444443333 35778999999999999998522 23
Q ss_pred HHHHHHHHhcCCCCcEEEEEec
Q 023787 249 VSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 249 ~~~l~~~~r~LkpGG~lii~e~ 270 (277)
..+|+..++.|+|||++++.-.
T Consensus 205 ~~FL~~Ra~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 205 TTFLRIHSEELISRGRMLLTFI 226 (384)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEe
Confidence 3457888999999999999743
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.3e-09 Score=96.88 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=81.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-------------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-------------------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 215 (277)
+.++.+|||.+||+|.+...+++.. ...++|+|+++.+++.|+.++...+.... ......
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-~~~~~~ 245 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGA 245 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBS
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-ccccCC
Confidence 4567799999999999988776541 12699999999999999988765443110 001267
Q ss_pred EEEcCCCCCC-CCCCceeEEecchhhhcCCh------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 216 ~~~~d~~~~~-~~~~~fD~Vi~~~~l~~~~~------------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.++|....+ ...++||+|+++..+..... ..-..++..+.+.|||||++.++-
T Consensus 246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 7888865533 23468999999877654321 112378999999999999998873
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-08 Score=80.15 Aligned_cols=102 Identities=16% Similarity=0.039 Sum_probs=73.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC------------
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------------ 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~------------ 224 (277)
+..+|||+||| ..|..+++....+|+.+|.+++..+.|++++...++. ...+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhcccccccchhh
Confidence 45799999985 6777666422358999999999999999999875430 024788999986542
Q ss_pred ---C--------C-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 225 ---T--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 225 ---~--------~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+ . ..++||+|+.-.-. ....+..+.+.|+|||++ +.||+
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~I-v~DNv 155 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTL-LFDDY 155 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEE-EETTG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEE-EEeCC
Confidence 1 1 23689999987642 125566677999999998 55664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=88.71 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCccEEEeeccccHHHHHHHHh--------C-------CC-cEEEEeCCHHHHHHHHHHhCCCCCC------CCCCCcce
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--------Y-------FN-EVDLLEPVSHFLDAARESLAPENHM------APDMHKAT 214 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--------~-------~~-~v~gvD~S~~~l~~a~~~~~~~~~~------~~~~~~~~ 214 (277)
.+.+|+|+|||+|..|..++.. . +. +|..-|+........=+.+....-. ......+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 4689999999999999876321 1 22 6788887766655444444331100 00000011
Q ss_pred eEEEc---CCCCCCCCCCceeEEecchhhhcCCh------------------------------------hhHHHHHHHH
Q 023787 215 NFFCV---PLQDFTPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRA 255 (277)
Q Consensus 215 ~~~~~---d~~~~~~~~~~fD~Vi~~~~l~~~~~------------------------------------~d~~~~l~~~ 255 (277)
-|..+ .+-.-.+++++||+|+|+.+||++.+ .|+..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 33333477899999999999999861 2677789999
Q ss_pred HhcCCCCcEEEEEe
Q 023787 256 KVGLKPGGFFVLKE 269 (277)
Q Consensus 256 ~r~LkpGG~lii~e 269 (277)
++.|+|||+++++=
T Consensus 212 a~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 212 AAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEE
Confidence 99999999999973
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=96.64 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=80.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSH 191 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~ 191 (277)
..++.+|||.+||+|.++...+... ...++|+|+++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 4467899999999999988776542 126999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEecchhhhc-C-ChhhHHHHHHHHH---hcCCCCcE
Q 023787 192 FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-L-TDDDFVSFFKRAK---VGLKPGGF 264 (277)
Q Consensus 192 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Vi~~~~l~~-~-~~~d~~~~l~~~~---r~LkpGG~ 264 (277)
|++.|++++...|+ ...++|.+.|+.++..+ .++||+|+++..+.. + ..+++..+.+.+. +.+.|||.
T Consensus 268 av~~A~~N~~~agv-----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 268 VIQRARTNARLAGI-----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHHTTC-----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHcCC-----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999987766 45689999999887433 348999999966532 1 2234445555444 44568999
Q ss_pred EEEE
Q 023787 265 FVLK 268 (277)
Q Consensus 265 lii~ 268 (277)
+++.
T Consensus 343 ~~il 346 (703)
T 3v97_A 343 LSLF 346 (703)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-09 Score=88.88 Aligned_cols=75 Identities=8% Similarity=0.059 Sum_probs=58.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCc--EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC----
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---- 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---- 228 (277)
..++.+|||||||+|.++. +. ++ .+ |+++|+++.|++.+++++.. ..+++++++|+.++++++
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~ 87 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHH
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhcc
Confidence 4467899999999999999 64 44 45 99999999999999988754 257999999998876432
Q ss_pred -CceeEEecchhh
Q 023787 229 -GRYDVIWVQWCI 240 (277)
Q Consensus 229 -~~fD~Vi~~~~l 240 (277)
+..|.|+++...
T Consensus 88 ~~~~~~vvsNlPY 100 (252)
T 1qyr_A 88 MGQPLRVFGNLPY 100 (252)
T ss_dssp HTSCEEEEEECCT
T ss_pred cCCceEEEECCCC
Confidence 234677777653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=88.81 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=62.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C---CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P---ET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---~~ 228 (277)
..++.+|||+|||+|..+..+++..+ .+|+++|+|+.|++.|++++...+ .++.++++|+.+++ . ..
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEECCHHHHHHHHHhcCC
Confidence 45678999999999999999998863 489999999999999999987632 46899999988764 1 11
Q ss_pred CceeEEecch
Q 023787 229 GRYDVIWVQW 238 (277)
Q Consensus 229 ~~fD~Vi~~~ 238 (277)
.+||.|++..
T Consensus 97 ~~~D~Vl~D~ 106 (301)
T 1m6y_A 97 EKVDGILMDL 106 (301)
T ss_dssp SCEEEEEEEC
T ss_pred CCCCEEEEcC
Confidence 5799999754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-09 Score=99.59 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=75.5
Q ss_pred CCccEEEeeccccHHHHHHHHh----C----------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIR----Y----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~----~----------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
....|||+|||+|.++...+.. + ..+|++||-|+.++..++.+.. +++ ..+++++.++++
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----~d~VtVI~gd~e 482 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----KRRVTIIESDMR 482 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----TTCSEEEESCGG
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----CCeEEEEeCchh
Confidence 3568999999999997533221 1 1289999999977766655543 343 456999999999
Q ss_pred CCCCC-----CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 223 DFTPE-----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 223 ~~~~~-----~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++..+ .+++|+|||-+.=..+..+-....|..+.+.|||||+++
T Consensus 483 ev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 483 SLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp GHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred hcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 98762 479999998776333333345568888899999999876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-08 Score=87.18 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=59.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-- 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~---v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 229 (277)
..++.+|||||||+|.++..++..+..+ |+++|+|+.|++.++++. . .+++++++|+.++++++-
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGEEEEESCGGGCCGGGGSC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCcEEEECChhcCChhHhcc
Confidence 4567899999999999999999775532 999999999999999984 2 468999999988875421
Q ss_pred ----ceeEEecchhh
Q 023787 230 ----RYDVIWVQWCI 240 (277)
Q Consensus 230 ----~fD~Vi~~~~l 240 (277)
..+.|+++...
T Consensus 110 ~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPY 124 (279)
T ss_dssp SSSSCCEEEEEECCH
T ss_pred cccCCceEEEEccCc
Confidence 23456665543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-09 Score=88.27 Aligned_cols=105 Identities=14% Similarity=0.011 Sum_probs=66.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++.. ....|+|+|++..+...+.. ......++.+...++....++..++|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~--------~~~~g~~ii~~~~~~dv~~l~~~~~Dv 159 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM--------RTTLGWNLIRFKDKTDVFNMEVIPGDT 159 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--------CCBTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc--------cccCCCceEEeeCCcchhhcCCCCcCE
Confidence 457789999999999999977644 33479999998653221110 000122333334333323344578999
Q ss_pred EecchhhhcCCh-----hhHHHHHHHHHhcCCCC--cEEEEE
Q 023787 234 IWVQWCIGHLTD-----DDFVSFFKRAKVGLKPG--GFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~-----~d~~~~l~~~~r~LkpG--G~lii~ 268 (277)
|+|..+.+ ... .....+|.-+.++|+|| |.|++.
T Consensus 160 VLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 160 LLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99987765 221 11223577788999999 999986
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-09 Score=93.75 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC--CCCCCCCCcceeEEEcCCCCC-CC-CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TP-ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~~-~~~~fD 232 (277)
++.+|||+|||+|..+..++..+ .+|+++|+|+.|++.|++++... ++ .+++++++|+.++ +. ++++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccCCCce
Confidence 46899999999999999877554 47999999999999999998753 32 4699999999875 21 235899
Q ss_pred EEecch
Q 023787 233 VIWVQW 238 (277)
Q Consensus 233 ~Vi~~~ 238 (277)
+|++..
T Consensus 166 vV~lDP 171 (410)
T 3ll7_A 166 YIYVDP 171 (410)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999853
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=84.69 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCCccEEEeeccccHHHHHHHHh------------C---CC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR------------Y---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~------------~---~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
+...+|+|+||++|..|..+... + .. +|...|+.......+-+.+..... ..+.-|..
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-----~~~~~f~~ 124 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-----VDGVCFIN 124 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-----CTTCEEEE
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc-----cCCCEEEE
Confidence 35689999999999877654433 1 22 789999998888888777654210 01223444
Q ss_pred c---CCCCCCCCCCceeEEecchhhhcCCh-------------------------------hhHHHHHHHHHhcCCCCcE
Q 023787 219 V---PLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 219 ~---d~~~~~~~~~~fD~Vi~~~~l~~~~~-------------------------------~d~~~~l~~~~r~LkpGG~ 264 (277)
+ .+-.-.++++++|+|+|+.++|++.+ .|+..+|+..++.|+|||+
T Consensus 125 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred ecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 3 33334577899999999999999853 2567789999999999999
Q ss_pred EEEE
Q 023787 265 FVLK 268 (277)
Q Consensus 265 lii~ 268 (277)
+++.
T Consensus 205 mvl~ 208 (359)
T 1m6e_X 205 MVLT 208 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-08 Score=85.54 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=80.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC--CCCCCCcceeEEEcCCCCCC----CCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH--MAPDMHKATNFFCVPLQDFT----PETG 229 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (277)
.++.+||-||.|.|..++.+++....+|+.||+++.+++.+++.+..... .......+++.+..|...+. ...+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 35689999999999999999976666899999999999999998764211 11111245788888875442 1235
Q ss_pred ceeEEecchhh-------hcCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCI-------GHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l-------~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+||+|+.-..- ..... .--..+++.+++.|+|||+++..-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 89999965321 11111 113578999999999999998753
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-08 Score=85.37 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=59.0
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCC--CCCCC-CCcceeEEEcCCCCC-CCCCCceeEE
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPD-MHKATNFFCVPLQDF-TPETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~~~~-~~~~~~~~~~d~~~~-~~~~~~fD~V 234 (277)
.+|||+|||+|..+..++..+. +|+++|+++.+.+.+++++.... ..... ...+++++++|..++ +....+||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 7999999999999999998876 59999999988666665543210 00000 024689999998764 2112479999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
++...+.+
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99877655
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.7e-08 Score=89.91 Aligned_cols=105 Identities=11% Similarity=-0.128 Sum_probs=74.2
Q ss_pred ccEEEeeccccHHHHHHHHhC----------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 159 LVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~----------------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
.+|||.+||+|.+...++... ...++|+|+++.++..|+.++...++ ..++.+.++|..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----~~~i~i~~gDtL 320 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI-----DFNFGKKNADSF 320 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC-----CCBCCSSSCCTT
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC-----Ccccceeccchh
Confidence 499999999999987765321 22699999999999999988755443 122333556654
Q ss_pred CCC-CCCCceeEEecchhhhc-------------------------CChh--hHHHHHHHHHhcCCCCcEEEEE
Q 023787 223 DFT-PETGRYDVIWVQWCIGH-------------------------LTDD--DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 223 ~~~-~~~~~fD~Vi~~~~l~~-------------------------~~~~--d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+ +...+||+|+++..+.. ++.. .--.+++.+.+.|+|||++.++
T Consensus 321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiV 394 (544)
T 3khk_A 321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALL 394 (544)
T ss_dssp TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEE
Confidence 433 34578999999876543 1100 0125899999999999998776
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.4e-07 Score=83.40 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=79.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--C-CCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~ 228 (277)
.++.+|+|.+||+|.+...+++.. ...++|+|+++.++..|+.++...+.. ..+..+.++|.... + ...
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~d~p~~~~ 295 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDEDWPTQEP 295 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTSCSCCSSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceeccccccccc
Confidence 466799999999999988777663 237999999999999999886544331 13567888887654 3 345
Q ss_pred CceeEEecchhhhc-------------------CC---hhhHHHHHHHHHhcCC-CCcEEEEE
Q 023787 229 GRYDVIWVQWCIGH-------------------LT---DDDFVSFFKRAKVGLK-PGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~-------------------~~---~~d~~~~l~~~~r~Lk-pGG~lii~ 268 (277)
.+||+|+++..+.. ++ ..+ -.++..+.+.|+ |||++.++
T Consensus 296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEE
T ss_pred ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEE
Confidence 78999998854421 10 011 248999999999 99998776
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=79.14 Aligned_cols=105 Identities=12% Similarity=-0.056 Sum_probs=65.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+||++|.++..+++. +...|+|+|++..+... +........++.....+..-..+..+++|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~--------P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEK--------PIHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCC--------CCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccc--------cccccccCCceEEeecCceeeecCCCCcCE
Confidence 457899999999999999988754 34478999997532110 000000011233333332222344578999
Q ss_pred EecchhhhcCChh-----hHHHHHHHHHhcCCCC-cEEEEE
Q 023787 234 IWVQWCIGHLTDD-----DFVSFFKRAKVGLKPG-GFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~-----d~~~~l~~~~r~LkpG-G~lii~ 268 (277)
|+|..+.+ .... ....++.-+.++|+|| |.|++.
T Consensus 151 VlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99876655 2211 1234577788999999 999986
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.5e-07 Score=86.67 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=74.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHH--HHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFT-PETG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 229 (277)
++.+|||.|||+|.+...++.... .+++|+|+++.+++.| +.++..+.+... .....+...|+.... ...+
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--i~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--NNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--TBCCEEECCCGGGCCGGGGT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--CCcceEEecchhcccccccC
Confidence 567999999999999998887653 2799999999999999 555543222100 011244445554422 2346
Q ss_pred ceeEEecchhhhc-CC-hh-------------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGH-LT-DD-------------------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~-~~-~~-------------------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+||+|+++..+.. .. +. -...++..+.+.|+|||++.+.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999876521 11 00 1335789999999999999886
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-07 Score=78.98 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred CCCccEEEeeccccHHHHHHHHh-------CC------CcEEEEeCCH---HHHH-----------HHHHHhCCCCCC--
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-------YF------NEVDLLEPVS---HFLD-----------AARESLAPENHM-- 206 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-------~~------~~v~gvD~S~---~~l~-----------~a~~~~~~~~~~-- 206 (277)
.+..+|||+|+|+|..+..+++. .+ .+++++|..| +++. .|++.+......
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999998876653 33 2799999766 4444 455554321000
Q ss_pred ------CCCCCcceeEEEcCCCCC-C-CCC---CceeEEecc-hhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 207 ------APDMHKATNFFCVPLQDF-T-PET---GRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 207 ------~~~~~~~~~~~~~d~~~~-~-~~~---~~fD~Vi~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
......+++++.+|+.+. + .+. ..||+|+.- ++-...|+---..+|+.++++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 000124677888887663 2 111 279999974 232222210124799999999999999885
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-07 Score=70.33 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=59.4
Q ss_pred CCccEEEeecccc-HHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023787 157 QHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG-~~s~~l~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (277)
++.+|||||||.| ..+..|++ .++ .|+++|+++..++ +++.|+.+..... ..||+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~DL 92 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAAL 92 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------------eEEccCCCCcccccCCcCE
Confidence 4579999999999 79998887 555 5999999864433 6778887743221 37999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++... +.+++..+.++++.. |.-++|.
T Consensus 93 IYsirP-----P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 93 IYSIRP-----PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp EEEESC-----CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred EEEcCC-----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 988765 346667777776643 4556655
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-07 Score=76.94 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=76.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhC------CCcEEEEeCCHH--------------------------HHHHHHHHhCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSH--------------------------FLDAARESLAPE 203 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~--------------------------~l~~a~~~~~~~ 203 (277)
..+.+|||+|+..|..+..++... ..+|+++|..+. .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 356799999999999998775431 237999996421 467788888765
Q ss_pred CCCCCCCCcceeEEEcCCCCC-C-CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 204 NHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++. ..+++++.+++.+. + .++++||+|+.-.-.. +.....|..+...|+|||++++-|
T Consensus 185 gl~----~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLL----DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCC----STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCC----cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 541 25799999987653 2 3346899999765421 134578999999999999887754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=75.82 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=82.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
+.++.+|||+.||.|.=|..++..+.. .|+++|+|+.-++..++++...+........++.....|...++ ...+.||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 678899999999999999988876554 79999999999998888876543322222356777778876653 2346899
Q ss_pred EEe----cchh----hhc-------CChhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIW----VQWC----IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi----~~~~----l~~-------~~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|+ |+.. +.. ....+ ...+|.++.+.|||||+|+.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 999 3331 111 11111 2468889999999999999874
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-06 Score=72.62 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=68.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.++||+||++|.+|..+++++. +|++||+.+ |-.... . ..+++++..|...+.++.++||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~----~--------~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM----D--------TGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH----T--------TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc----c--------CCCeEEEeCccccccCCCCCcCEE
Confidence 45789999999999999999988876 699999863 222111 1 356899999999888777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|-.+.. +.....++......+..++.++...
T Consensus 275 vsDm~~~---p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 275 VCDMVEK---PAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp EECCSSC---HHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred EEcCCCC---hHHhHHHHHHHHhccccceEEEEEE
Confidence 9977653 2233344444444444456555443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-06 Score=70.14 Aligned_cols=103 Identities=12% Similarity=-0.019 Sum_probs=60.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCC-cceeEEEc-CCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCV-PLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~-d~~~~~~~~~~f 231 (277)
..++.+|+|+||+.|.++...++.. ...|.|.++.... ........... .-+.|.++ |+.++. ..++
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence 5689999999999999999766531 2234566554220 00000000001 11244446 887643 3579
Q ss_pred eEEecchhhhcCC--hhh---HHHHHHHHHhcCCCCc-EEEEE
Q 023787 232 DVIWVQWCIGHLT--DDD---FVSFFKRAKVGLKPGG-FFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~--~~d---~~~~l~~~~r~LkpGG-~lii~ 268 (277)
|+|+|-.+-. .+ .-| ...+|.-+.+.|+||| .|++.
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 9999865432 21 111 1126777779999999 88875
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=68.41 Aligned_cols=106 Identities=10% Similarity=-0.019 Sum_probs=66.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD 232 (277)
..++.+||||||++|.++..++.. +...|.|+|+...-.+ ..-+...-....+.|... |+..++. .++|
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-------~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D 162 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-------EPQLVQSYGWNIVTMKSGVDVFYRPS--ECCD 162 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-------CCCCCCBTTGGGEEEECSCCTTSSCC--CCCS
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-------CcchhhhcCCcceEEEeccCHhhCCC--CCCC
Confidence 457789999999999999966644 4448999998643110 000000000134677776 8766654 5699
Q ss_pred EEecchhhhcCChh--h---HHHHHHHHHhcCCCC-cEEEEEec
Q 023787 233 VIWVQWCIGHLTDD--D---FVSFFKRAKVGLKPG-GFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~--d---~~~~l~~~~r~LkpG-G~lii~e~ 270 (277)
+|+|--. .--+.. + -..+|.-+.+.|++| |-|++.=.
T Consensus 163 ~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 163 TLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred EEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 9997665 322211 2 233677778899999 88888533
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.06 E-value=7.8e-06 Score=69.96 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=59.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (277)
..++..++|++||.|..+..++++ ..+|+|+|.++.+++.|++ +.. .++.++++++.++. ...+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcchHHHHHHHcCCC
Confidence 456789999999999999999987 3479999999999999998 654 36889999988763 2225
Q ss_pred ceeEEecc
Q 023787 230 RYDVIWVQ 237 (277)
Q Consensus 230 ~fD~Vi~~ 237 (277)
+||.|++.
T Consensus 89 ~vDgIL~D 96 (285)
T 1wg8_A 89 RVDGILAD 96 (285)
T ss_dssp CEEEEEEE
T ss_pred CcCEEEeC
Confidence 79999853
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-06 Score=95.50 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~ 228 (277)
.+..+|||||.|+|..+..++... +.+++..|+|+.+.+.|++++.. ..++....|..+. ++..
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---------~di~~~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---------LHVTQGQWDPANPAPGSL 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---------HTEEEECCCSSCCCC---
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---------cccccccccccccccCCC
Confidence 356899999999998777666542 22799999999888888777643 1122222233331 2234
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||+|++..++|..+ ++...+.+++++|||||++++.|.
T Consensus 1310 ~~ydlvia~~vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLG--DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp --CCEEEEECC----------------------CCEEEEEEC
T ss_pred CceeEEEEcccccccc--cHHHHHHHHHHhcCCCcEEEEEec
Confidence 6899999999998766 667899999999999999999874
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=60.97 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=67.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD 232 (277)
..++.+|||+||++|.++..++.. +..+|.++|+-..-.+ ...+....-...+.|..+ |+..++. .++|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-------~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~D 146 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-------EPVPMSTYGWNIVKLMSGKDVFYLPP--EKCD 146 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-------CCCCCCCTTTTSEEEECSCCGGGCCC--CCCS
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-------CcchhhhcCcCceEEEeccceeecCC--cccc
Confidence 457789999999999999966654 3448999998643211 000000000246888888 8765543 5799
Q ss_pred EEecchhhhcCC-hhh---HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLT-DDD---FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~-~~d---~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.|+|-..=..-. ..| -..+|.-+.+.|++ |-|++.=.+
T Consensus 147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 999865432211 112 23367777899999 788875333
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=69.01 Aligned_cols=108 Identities=17% Similarity=0.046 Sum_probs=72.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--------------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d 220 (277)
+.++.+|+|-.||+|.+.....+.. ...++|+|+++.+...|+-++--.+. ....+...|
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~------~~~~I~~~d 288 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL------EYPRIDPEN 288 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC------SCCEEECSC
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC------ccccccccc
Confidence 5567799999999999987665431 12599999999999999877543322 123455565
Q ss_pred CCCCC----CCCCceeEEecchhhhcCCh--------------hhHHHHHHHHHhcCC-------CCcEEEEE
Q 023787 221 LQDFT----PETGRYDVIWVQWCIGHLTD--------------DDFVSFFKRAKVGLK-------PGGFFVLK 268 (277)
Q Consensus 221 ~~~~~----~~~~~fD~Vi~~~~l~~~~~--------------~d~~~~l~~~~r~Lk-------pGG~lii~ 268 (277)
....+ .+..+||+|+++..+..-.+ +.-..+++.+.+.|| |||++.++
T Consensus 289 tL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 289 SLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp TTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred cccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 54433 12357999999877632110 112357788888886 79998876
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00021 Score=62.99 Aligned_cols=115 Identities=9% Similarity=0.074 Sum_probs=83.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCC-----C----CC------CCCcceeEEEcC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-----M----AP------DMHKATNFFCVP 220 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~-----~----~~------~~~~~~~~~~~d 220 (277)
+...|+.+|||.......+...+.. .++-||. |.+++.-++.+...+. . .. ....+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4578999999999988888765443 5666676 7787777666544210 0 00 002467788889
Q ss_pred CCCCC--------C-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 221 LQDFT--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 221 ~~~~~--------~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+.+.. . ......++++-.+++|++.+....+++.+.+.. |+|.+++.|.+.+
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 88732 1 235678999999999999999999999999887 8888887787655
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00023 Score=63.85 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=72.2
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--------CCCc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR 230 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 230 (277)
.+++|+-||.|.++..+...++..+.++|+++..++..+.++.. ..+++.|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcCHHHHHhhcccCCC
Confidence 57999999999999999988988888999999999999988643 4567778777631 2357
Q ss_pred eeEEecchhhhcCC-------hhhHHHH---HHHHHhcCCCCcEEEEEecCCC
Q 023787 231 YDVIWVQWCIGHLT-------DDDFVSF---FKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 231 fD~Vi~~~~l~~~~-------~~d~~~~---l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|+|+.......++ ++....+ +-++...++| .+++.||++.
T Consensus 72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred eeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 99999655433222 1111122 3344455678 5777899864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=63.72 Aligned_cols=58 Identities=19% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
..++..++... ..++..|||++||+|..+..++..+. +++|+|+++.+++.|++++..
T Consensus 222 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 222 LELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 44555555432 24678999999999999998776554 699999999999999998754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=62.90 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=67.8
Q ss_pred CccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CCcee
Q 023787 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD 232 (277)
..+|+|+-||.|.++..+...+ +..|.++|+++.+++..+.++.. ..+++.|+.++... ...+|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------~~~~~~Di~~~~~~~~~~~~~D 70 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------cccccCCHHHccHhHcCcCCcC
Confidence 3589999999999999998888 44799999999999999999754 34567787776421 12589
Q ss_pred EEecchhhhcCCh-------hh-HHHHHH---HHHhcCC--CCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTD-------DD-FVSFFK---RAKVGLK--PGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d-~~~~l~---~~~r~Lk--pGG~lii~e~~~~ 273 (277)
+|+.......++. +| ...++. ++.+.++ |. +++.||+..
T Consensus 71 ~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~ 122 (343)
T 1g55_A 71 MILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG 122 (343)
T ss_dssp EEEECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT
T ss_pred EEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcc
Confidence 9997655333221 11 112333 3444455 54 566688864
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0005 Score=58.83 Aligned_cols=101 Identities=11% Similarity=-0.029 Sum_probs=76.6
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~ 233 (277)
+..+||+=+|+|.++..+++. ..+++.+|.++..++..++++.. ..++.++..|.... ..+..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 457899999999999999874 47899999999999999998865 35688888885332 133357999
Q ss_pred EecchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e 269 (277)
|++--....-. +...++..+.+ .+.|+|++++=-
T Consensus 163 VfiDPPYe~k~--~~~~vl~~L~~~~~r~~~Gi~v~WY 198 (283)
T 2oo3_A 163 IFIDPSYERKE--EYKEIPYAIKNAYSKFSTGLYCVWY 198 (283)
T ss_dssp EEECCCCCSTT--HHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred EEECCCCCCCc--HHHHHHHHHHHhCccCCCeEEEEEE
Confidence 99988765422 56666666665 457899988743
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=56.73 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=68.7
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~ 236 (277)
+.+++|+.||.|.++..+...++..+.++|+++..++..+.++... . +.|+.++... -..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~-----~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------P-----EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------C-----BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------C-----cCCHHHcCHhhCCCCCEEEE
Confidence 4789999999999999999888888999999999999999998652 1 4565554311 125899996
Q ss_pred chhhhcCC---------hh--hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLT---------DD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~---------~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
......++ ++ .+-.-+-++.+.++|. +++.||++
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~ 122 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVK 122 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcH
Confidence 54333221 11 1222233344556884 77889975
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=55.42 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..++..++... ..++..|||..||+|..+......+ .+++|+|+++.+++.+++++...
T Consensus 199 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhc
Confidence 45555555432 2467899999999999999766544 57999999999999999998653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=57.69 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
++..|||||.|.|.+|..|++.. +.+|+++|+.+.++...++.+ . ..+++++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------CCCEEEEECCccch
Confidence 35789999999999999999763 557999999999999999877 2 24688888888554
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=56.70 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
..++..++|..||.|..+..+++.. +. +|+|+|.++.+++.++ ++. ..++.++..++.++. ..
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcC
Confidence 4678899999999999999999774 32 8999999999999984 442 256888988887763 11
Q ss_pred -CCceeEEecc
Q 023787 228 -TGRYDVIWVQ 237 (277)
Q Consensus 228 -~~~fD~Vi~~ 237 (277)
.+++|.|+..
T Consensus 125 ~~~~vDgILfD 135 (347)
T 3tka_A 125 LIGKIDGILLD 135 (347)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCcccEEEEC
Confidence 1368998843
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0095 Score=51.81 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=75.7
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---------CCCC
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 229 (277)
..|++||||-=.....+.......|+-|| -|.+++..++.+...+. ....+..++.+|+.+ . +...
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 46999999976554433311112688889 49999999888863221 013567788889876 3 1223
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.-=++++-.+++|+++++...+++.+...+.||+.+++.
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d 217 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 217 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 455777888999999999999999999999999988775
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0032 Score=55.28 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=71.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcE-EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCc
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v-~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 230 (277)
...+++|+-||.|.++..+...++ ..+ .++|+++..++..+.++... +++.|+.++.. +...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------CBCCCTTTCCHHHHHHTC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------cccCChhhcCHHHhccCC
Confidence 457999999999999999888775 556 79999999999999998651 34567777642 1236
Q ss_pred eeEEecchhhhcC---------C-hhhHHHHHHHHHh-cCCC---CcEEEEEecCCC
Q 023787 231 YDVIWVQWCIGHL---------T-DDDFVSFFKRAKV-GLKP---GGFFVLKENIAR 273 (277)
Q Consensus 231 fD~Vi~~~~l~~~---------~-~~d~~~~l~~~~r-~Lkp---GG~lii~e~~~~ 273 (277)
+|+++.......+ . ++....++.++.+ +++. --.+++.||+..
T Consensus 77 ~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g 133 (327)
T 3qv2_A 77 CNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL 133 (327)
T ss_dssp CCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred CCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence 8999965443333 1 1122245556666 4432 246888899853
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0022 Score=54.93 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCCccEEEeec------cccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGS------GIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
.+.+.+|||+|+ -+|... +.+.++. .|+++|+.+-.. ... .++++|......
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~s-----------------da~-~~IqGD~~~~~~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFVS-----------------DAD-STLIGDCATVHT 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCBC-----------------SSS-EEEESCGGGEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCccccc-----------------CCC-eEEEcccccccc
Confidence 567899999996 677742 2233443 799999864210 111 448888765433
Q ss_pred CCCceeEEecchhh---hcCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 ETGRYDVIWVQWCI---GHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l---~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++||+|+|-.+- .+...+ =.+.++.-+.+.|+|||.|++.
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 3789999965432 121111 1456777788899999999986
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=50.62 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCc--EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC----C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----T 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~ 228 (277)
.....+++|+=||.|.++..+...++.- |.++|+++...+.-+.++.. ..++..|+.++... .
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----------~~~~~~DI~~i~~~~i~~~ 81 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----------KIMYVGDVRSVTQKHIQEW 81 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----------CEEEECCGGGCCHHHHHHT
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----------CceeCCChHHccHHHhccc
Confidence 4466799999999999999988888874 69999999999888887643 34567788776421 1
Q ss_pred CceeEEecchhhhc----------CChh--hHHHHHHHHHhcCCCC-cE----EEEEecCCC
Q 023787 229 GRYDVIWVQWCIGH----------LTDD--DFVSFFKRAKVGLKPG-GF----FVLKENIAR 273 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~----------~~~~--d~~~~l~~~~r~LkpG-G~----lii~e~~~~ 273 (277)
+.+|+++....... +.++ .+-.-+.++.+.++|. |. +++.||++.
T Consensus 82 ~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~g 143 (295)
T 2qrv_A 82 GPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVA 143 (295)
T ss_dssp CCCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESS
T ss_pred CCcCEEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCcc
Confidence 36899985432111 1111 1222233444556776 32 778899864
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0048 Score=54.28 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=67.9
Q ss_pred ccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023787 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (277)
.+++|+-||.|.++..+...++ .-|.++|+++...+.-+.++.. ..++..|+.++.. +...+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------TNLLNRNIQQLTPQVIKKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECCCGGGCCHHHHHHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------CceeccccccCCHHHhccCCCCE
Confidence 5899999999999999888886 4688999999999999998754 2345667766542 1236899
Q ss_pred EecchhhhcCC--------hhhHHHHHHH---HHhcCC-CCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLT--------DDDFVSFFKR---AKVGLK-PGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~--------~~d~~~~l~~---~~r~Lk-pGG~lii~e~~~~ 273 (277)
++.......++ ++....++.+ +.+.++ | .+++.||++.
T Consensus 73 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~g 122 (333)
T 4h0n_A 73 ILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKG 122 (333)
T ss_dssp EEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTT
T ss_pred EEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchh
Confidence 98544322221 0111123333 334444 6 6788899864
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=51.25 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=69.6
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~ 237 (277)
++|+|+=||.|.++..+-..++.-+.++|+++.+.+.-+.++.. .++..|+.++... -..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------------~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------------EEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CcccCChhhCCHhhCCcccEEEec
Confidence 37999999999999998888888889999999999998888643 3567788776422 2368999855
Q ss_pred hhhhcC---------Chh--hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 238 WCIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 238 ~~l~~~---------~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.....+ .++ .+-.-+-++.+.++|. +++.||++
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~ 112 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK 112 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECC
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeec
Confidence 432222 111 1222233455567884 77789985
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.022 Score=50.51 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----CCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 227 (277)
..++.+||-+|||. |..+..+++.. ..+|+++|.++.-++.+++.-.. ..+...-.++ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------------EEecCCccCHHHHHHHhc
Confidence 56788999999986 88888887754 43699999999999999765322 1111111111 011
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+.||+|+-.-.- ...++.+.+.|+|||++++.-.
T Consensus 256 ~gg~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 256 DGGVNFALESTGS--------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp TSCEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence 2379999854331 1467888999999999988643
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.018 Score=46.11 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=59.9
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||..|+ |.|..+..++.....+|+++|.+++.++.+++. .. . .. .|..+..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g~--------~---~~--~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL-GV--------E---YV--GDSRSVDFADEILE 101 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT-CC--------S---EE--EETTCSTHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC--------C---EE--eeCCcHHHHHHHHH
Confidence 457789999994 567777666654334699999999888777542 11 0 01 1222111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 102 ~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA----G-----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HTTTCCEEEEEECCC----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred HhCCCCCeEEEECCc----h-----HHHHHHHHHhccCCEEEEEc
Confidence 11236999986542 1 46788889999999998864
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.073 Score=44.85 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=67.9
Q ss_pred CCccEEEeeccccHHHHHHHHh-------CC-CcEEEEe-----CCHH----------------------HHHHH---HH
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-------YF-NEVDLLE-----PVSH----------------------FLDAA---RE 198 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-------~~-~~v~gvD-----~S~~----------------------~l~~a---~~ 198 (277)
-+..|+|+||-.|..+..++.. +. .+|+++| +.+. .++.. .+
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4678999999999988876542 12 3899999 3211 11111 11
Q ss_pred HhCCCCCCCCCCCcceeEEEcCCCCCC------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 199 SLAPENHMAPDMHKATNFFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+....+. ...+++++.+++.+.. .+..+||+|+.-.-. + +.....+..+...|+|||++++-|-
T Consensus 149 ~~~~~g~----~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGH----VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTT----SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCC----CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 1111111 1367999999876542 234579999876542 1 1344678899999999999998663
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=54.49 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=46.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
...+++|+=||.|.++..+...++.-|.++|+++...+.-+.++... +...+++.|+.++
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--------p~~~~~~~DI~~i 146 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--------PATHHFNEDIRDI 146 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--------TTTCEEESCTHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--------CCcceeccchhhh
Confidence 45799999999999999888777777999999999999888887431 2234556666544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.048 Score=48.32 Aligned_cols=99 Identities=18% Similarity=0.031 Sum_probs=65.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CC-CCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QD-FTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~-~~~~ 227 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-... .+++...++ .+ ....
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA---------TVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE---------EECTTSSCHHHHHHSTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE---------EECCCCcCHHHHHHhhhhcc
Confidence 45788999999975 7788888776544 8999999999999888753220 011000111 00 0011
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+.+|+|+-+-.- ...+..+.+.|++||++++.-.
T Consensus 251 ~gg~Dvvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 251 PGGVDVVIECAGV--------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TTCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 2479999854321 1467888899999999998643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.026 Score=49.32 Aligned_cols=93 Identities=20% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC------C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------E 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~ 227 (277)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.-.. .. .|..+..+ .
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~--i~~~~~~~~~~~~~~ 229 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------------VA--VNARDTDPAAWLQKE 229 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EE--EETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------------EE--EeCCCcCHHHHHHHh
Confidence 56788999999985 8888888877555899999999999988764322 11 11111110 0
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+.+|+|+....- . ..++.+.+.|+|||++++.-
T Consensus 230 ~g~~d~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 230 IGGAHGVLVTAVS------P--KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp HSSEEEEEESSCC------H--HHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEEeCCC------H--HHHHHHHHHhccCCEEEEeC
Confidence 1368988754321 1 57788889999999998863
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.05 Score=48.68 Aligned_cols=102 Identities=9% Similarity=-0.129 Sum_probs=64.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T------ 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------ 225 (277)
..++.+||-+|||. |..+..+++.... +|+++|.|+..++.+++.- .+.+...-.++ .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------------a~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-------------FETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-------------CEEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-------------CcEEcCCCcchHHHHHHHH
Confidence 56788999999986 8888888875443 7999999999988886431 11121111111 0
Q ss_pred CCCCceeEEecchhhhcCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....||+|+-.-.-.... ..+....+..+.+.|+|||++++.-
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 0112699998554322100 0001246888899999999998753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.095 Score=46.05 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE---cCC-CCCC-CC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC---VPL-QDFT-PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~---~d~-~~~~-~~ 227 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. .-+++.. .+. ..+. ..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD---------LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---------EEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCcccccchHHHHHHHHh
Confidence 55788999999985 8888888876544 799999999998988754221 0011100 000 0000 00
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+.+|+|+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 240 ~~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEe
Confidence 1468998854321 1 46778889999999998763
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.058 Score=47.34 Aligned_cols=99 Identities=15% Similarity=-0.008 Sum_probs=64.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--C-CCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~ 229 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-... -++....++.+. . ....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~---------vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD---------IINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE---------EECGGGSCHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce---------EEcCCCcCHHHHHHHHcCCC
Confidence 56788999999985 7888888876544 7999999999999888753220 011000111000 0 1123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+|+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 235 g~D~v~d~~g~------~--~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 235 GVDKVVIAGGD------V--HTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp CEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred CCCEEEECCCC------h--HHHHHHHHHHhcCCEEEEecc
Confidence 69999854321 1 467888889999999987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.057 Score=46.95 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=61.9
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CC----
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT---- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~---- 225 (277)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++ +.. . ...|..+ +.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~--------~-----~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGF--------D-----AAFNYKTVNSLEEALK 208 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC--------S-----EEEETTSCSCHHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCC--------c-----EEEecCCHHHHHHHHH
Confidence 557789999998 67777777776544479999999998888843 321 0 1112222 10
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 209 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCeEEEECCC-------h--HHHHHHHHHHhcCCEEEEEe
Confidence 01147999986554 1 24678889999999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.072 Score=46.71 Aligned_cols=95 Identities=15% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCC------C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~------~ 226 (277)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+... -.++. .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------------VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------------EEEcCcccccHHHHHHHHh
Confidence 45778999999875 7778878776544699999999999988753211 111111 01110 0
Q ss_pred C---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
. ...+|+|+-+-.- . ..++.+.+.|+|||++++.-
T Consensus 234 ~~~~g~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN------E--KCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHSSSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCCCCEEEECCCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 0 1468999854331 1 46778889999999998863
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.059 Score=48.19 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=51.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC------CC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (277)
+.+..|+|+|.|.|.++..+++.. +. +++.||+|+...+.-++++... .++.+. .++.+++.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--------~~v~W~-~~l~~lp~- 148 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--------RNIHWH-DSFEDVPE- 148 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--------SSEEEE-SSGGGSCC-
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--------CCeEEe-CChhhcCC-
Confidence 345789999999999998887541 11 7999999999988777776541 134443 23333331
Q ss_pred CCceeEEecchhhhcCC
Q 023787 228 TGRYDVIWVQWCIGHLT 244 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~ 244 (277)
..=+|+++.+|..+|
T Consensus 149 --~~~~viANE~fDAlP 163 (387)
T 1zkd_A 149 --GPAVILANEYFDVLP 163 (387)
T ss_dssp --SSEEEEEESSGGGSC
T ss_pred --CCeEEEeccccccCc
Confidence 234677777776665
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.031 Score=50.49 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCCCccEEEeeccccHHHHHHH-HhCC--CcEEEEeCCHHHHHHHHHHhCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLL-IRYF--NEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~-~~~~--~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
..++..++|+||+.|..+..++ .... .+|+++|++|...+..++++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4578899999999999999887 4443 4899999999999999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=45.56 Aligned_cols=97 Identities=19% Similarity=0.033 Sum_probs=65.3
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC--CCC-----
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DFT----- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~----- 225 (277)
..++.+||-+|+|. |..+..+++.... .|+++|.|+.-++.+++. .. ..+++...+.. ++.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---------~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---------EVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---------TCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---------hcccccccccchHHHHHHHHH
Confidence 56788999999975 7888888876544 599999999999999887 32 11222211100 000
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+|+-+-.- . ..+..+.+.|++||++++.-
T Consensus 247 ~t~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALECTGV------E--SSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEc
Confidence 112479999854331 1 46788889999999999864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.027 Score=49.44 Aligned_cols=91 Identities=15% Similarity=0.044 Sum_probs=63.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.-.. ..+ .+...+ . ..+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~-~~~~~~--~-~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK------------HFY-TDPKQC--K-EELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS------------EEE-SSGGGC--C-SCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC------------eec-CCHHHH--h-cCCCE
Confidence 56788999999985 8888888876555899999999999988763221 111 222221 1 27999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 238 vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIPT------H--YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCCS------C--CCHHHHHTTEEEEEEEEECC
T ss_pred EEECCCc------H--HHHHHHHHHHhcCCEEEEEC
Confidence 9854331 1 25677888999999999864
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.076 Score=46.32 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=61.3
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++.-.. ..+...-.++. .
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~------------~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA------------YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc------------EEEeCCcccHHHHHHHHh
Confidence 5678899999987 67788777765444799999999988888874222 11111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....+|+|+.+-.- ..+....+.|+|||++++.-.
T Consensus 210 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 210 NGIGADAAIDSIGG---------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp TTSCEEEEEESSCH---------HHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCCcEEEECCCC---------hhHHHHHHHhcCCCEEEEEee
Confidence 12479999865432 112334479999999998743
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.067 Score=46.53 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=63.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|| |.|..+..+++....+|++++.++.-++.+.+.+... .. .|..+..
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-----------~~--~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD-----------GA--IDYKNEDLAAGLKR 213 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS-----------EE--EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC-----------EE--EECCCHHHHHHHHH
Confidence 567889999998 5788888887765558999999999888884443221 11 1111110
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+.+-. . ..+..+.+.|++||++++.-
T Consensus 214 ~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 214 ECPKGIDVFFDNVG-------G--EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred hcCCCceEEEECCC-------c--chHHHHHHHHhhCCEEEEEe
Confidence 01247999986443 1 36788889999999999863
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.095 Score=46.20 Aligned_cols=95 Identities=14% Similarity=-0.062 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+..+-.++. ..
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------------HGINRLEEDWVERVYALTG 254 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------------EEEcCCcccHHHHHHHHhC
Confidence 56788999999885 7788878876555899999999999998775322 11111111110 11
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...+|+|+-+-. . ..+..+.+.|+|||++++.-.
T Consensus 255 g~g~D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 255 DRGADHILEIAG----G-----AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp TCCEEEEEEETT----S-----SCHHHHHHHEEEEEEEEEECC
T ss_pred CCCceEEEECCC----h-----HHHHHHHHHhhcCCEEEEEec
Confidence 237999986543 1 246677789999999998743
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.08 Score=46.19 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=63.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CC----
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT---- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~---- 225 (277)
..++.+||-.|| |.|..+..+++....+|++++.++.-++.+++.+... .. .|..+ +.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~-----------~~--~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD-----------DA--FNYKEESDLTAALK 219 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS-----------EE--EETTSCSCSHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc-----------eE--EecCCHHHHHHHHH
Confidence 557889999997 6788888777765457999999999888887544220 01 12211 10
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+.+-. . ..+..+.+.|++||++++.-
T Consensus 220 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 220 RCFPNGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEEc
Confidence 01146999986543 2 36788889999999998863
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.054 Score=46.84 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCCccEEEeeccccHHHHHHH----HhCCC---cEEEEeCC------------HHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLL----IRYFN---EVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~----~~~~~---~v~gvD~S------------~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
.+..+|||+|-|||......+ +..+. +++.+|.. ....+.......... ......++
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~----~~~v~L~l 170 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYE----GERLSLKV 170 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEE----CSSEEEEE
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcccc----CCcEEEEE
Confidence 345789999999998754332 22333 45566531 112222222221100 00234566
Q ss_pred EEcCCCCCC--CCCCceeEEecch-hhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 217 FCVPLQDFT--PETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 217 ~~~d~~~~~--~~~~~fD~Vi~~~-~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..+|+.+.- .+...||+|+.-. +-..-|+-=-..+|+.++++++|||++.
T Consensus 171 ~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 171 LLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp EESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred EechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 677765432 3345799998643 2112121002479999999999999986
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.27 Score=43.97 Aligned_cols=98 Identities=11% Similarity=-0.080 Sum_probs=60.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. .. .+..+..
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~v--i~~~~~~~~~~i~~ 276 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD------------HV--IDPTKENFVEAVLD 276 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS------------EE--ECTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC------------EE--EcCCCCCHHHHHHH
Confidence 56788999999874 7777777776544 899999999999999775322 01 1111110
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+|+-+-.-. ......+++.+.+.+++||++++.-
T Consensus 277 ~t~g~g~D~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 277 YTNGLGAKLFLEATGVP---QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HTTTCCCSEEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred HhCCCCCCEEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 1123699998543211 0012233333345559999999864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.13 Score=44.77 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE------------YLINASKEDILRQVLKFT 213 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------------EEEeCCCchHHHHHHHHh
Confidence 567889999994 578888878776555899999999999888763211 11111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+|+|+.+-.- ..+..+.+.|+|||++++.-
T Consensus 214 ~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 214 NGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp TTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 12469999865441 35677788999999999864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.11 Score=45.43 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC------
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------ 227 (277)
..++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++. .. + ...|..+..+.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l-Ga------------~-~~~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL-GA------------D-LVVNPLKEDAAKFMKEK 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TC------------S-EEECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC-CC------------C-EEecCCCccHHHHHHHH
Confidence 4577899999986 57777777766545899999999999988753 21 0 11222211100
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+.+|+|+.+-.. ...++.+.+.|++||++++.-
T Consensus 228 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 228 VGGVHAAVVTAVS--------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp HSSEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred hCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 0369999855431 146778888999999998753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.11 Score=46.32 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=65.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CC------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------ 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~------ 225 (277)
..++.+||-+|||. |..+..+++.... +|+++|.++.-++.+++.- . +.+...-.+ +.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-a------------~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-F------------EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-C------------EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-C------------cEEccCCcchHHHHHHHH
Confidence 56788999999875 8888888876544 7999999999999987631 1 111111001 00
Q ss_pred CCCCceeEEecchhhh---------cCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 PETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~---------~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+|+-+-.-. |.+ +....+..+.+.|++||++++.-
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHE--APATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSB--CTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCccccccccccccc--chHHHHHHHHHHHhcCCEEEEec
Confidence 0113699998543311 111 22257888999999999998764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=44.87 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=63.4
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+| +|.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW------------ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEeCCCccHHHHHHHHh
Confidence 56788999999 3578888877776444799999999999988864221 11111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....+|+|+.+-.- ..+..+.+.|+|||++++.-.
T Consensus 206 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 206 DGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp TTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence 12479999865431 356678889999999998743
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.16 Score=44.63 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|+ |.|..+..+++....+|++++.++.-++.+++.-.. .. .|..+..
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~--~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EV--FNHREVNYIDKIKK 233 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EE--EETTSTTHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC------------EE--EeCCCchHHHHHHH
Confidence 557789999997 677777777766545799999999988877653111 11 1221111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+|+.+-.- ..+..+.+.|+|||++++.-
T Consensus 234 ~~~~~~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence 112369999866441 24667788999999998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.25 Score=43.13 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=61.5
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------C
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------P 226 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~ 226 (277)
++.+||-+|+| .|..+..+++.... +|+++|.++.-++.+++.-.. .. .|..+.. .
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~------------~~--~~~~~~~~~~~v~~~~ 232 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD------------YV--INPFEEDVVKEVMDIT 232 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS------------EE--ECTTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------------EE--ECCCCcCHHHHHHHHc
Confidence 77899999996 37777777766444 799999999998888754221 01 1211100 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+|+|+.+-.. ...++.+.+.|++||++++.-
T Consensus 233 ~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 233 DGNGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TTSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 12369999865431 146778889999999998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.09 Score=46.01 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=62.1
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----CC
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 226 (277)
..++.+||-.|+| .|..+..+++.. ..+|+++|.++..++.+++.-.. ..+...-.+. ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 235 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC------------EEecCCCccHHHHHHHH
Confidence 5577899999998 666777776654 44799999999998888654211 1111110111 01
Q ss_pred CC-CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~-~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.. +.+|+|+.+-.- ...++.+.+.|+|||++++.-
T Consensus 236 ~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp TTTSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred hcCCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 11 479999865431 146778889999999998763
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.065 Score=46.84 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=64.6
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|+|. |..+..+++.. ..+|+++|.+++-++.+++.-.. . .+..+ .++. .
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~---------~---~i~~~-~~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD---------A---AVKSG-AGAADAIRELT 235 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS---------E---EEECS-TTHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---------E---EEcCC-CcHHHHHHHHh
Confidence 45788999999975 88888888764 56899999999999998764222 1 11111 0110 0
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....+|+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 236 ~g~g~d~v~d~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 236 GGQGATAVFDFVGA------Q--STIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GGGCEEEEEESSCC------H--HHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCeEEEECCCC------H--HHHHHHHHHHhcCCEEEEECC
Confidence 11369998854331 1 478888999999999998643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.23 Score=43.76 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=62.7
Q ss_pred CCccEEEee-c-cccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE---EcCCCCCCCCCCc
Q 023787 157 QHLVALDCG-S-GIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPLQDFTPETGR 230 (277)
Q Consensus 157 ~~~~VLDiG-c-GtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 230 (277)
++.+||-+| + |.|..+..+++. +..+|+++|.++.-++.+++.-.+ .-++.. ...+.+ ...+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad---------~vi~~~~~~~~~v~~--~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH---------HVIDHSKPLAAEVAA--LGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS---------EEECTTSCHHHHHHT--TCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC---------EEEeCCCCHHHHHHH--hcCCC
Confidence 678999998 4 468889988876 456899999999999988763221 001000 000111 12357
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+-+-. -...+..+.+.|+|||++++..
T Consensus 240 ~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 240 PAFVFSTTH--------TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp EEEEEECSC--------HHHHHHHHHHHSCTTCEEEECS
T ss_pred ceEEEECCC--------chhhHHHHHHHhcCCCEEEEEC
Confidence 999985432 1147788889999999999863
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.061 Score=47.67 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=62.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD 232 (277)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.-.. .-++....+ +.... +.+|
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~---~g~D 259 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD---------EVVNSRNADEMAAHL---KSFD 259 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS---------EEEETTCHHHHHTTT---TCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEeccccHHHHHHhh---cCCC
Confidence 55788999999985 7888888876555799999999999988864221 001100001 11111 4799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+-.-.- + ..++.+.+.|+|||++++.-
T Consensus 260 vvid~~g~---~-----~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 260 FILNTVAA---P-----HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEECCSS---C-----CCHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCC---H-----HHHHHHHHHhccCCEEEEec
Confidence 99854331 1 24567788999999998753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.16 Score=44.21 Aligned_cols=93 Identities=12% Similarity=-0.012 Sum_probs=63.4
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-+|+ |.|..+..+++....+|+++|.++.-++.+++.-.. .. .|..+..
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~------------~~--~d~~~~~~~~~~~~ 229 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD------------ET--VNYTHPDWPKEVRR 229 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EE--EETTSTTHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC------------EE--EcCCcccHHHHHHH
Confidence 557889999998 688888888876545799999999999888753211 01 1221111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.....+|+|+.+-. . ..++.+.+.|+++|++++.-.
T Consensus 230 ~~~~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 230 LTGGKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp HTTTTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESSC
T ss_pred HhCCCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEEec
Confidence 11247999986554 1 246677889999999987643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.15 Score=44.17 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=61.9
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.| +|.|..+..++.....+|+++|.++..++.+++.-.. .. .|..+..
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~------------~~--~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QV--INYREEDLVERLKE 203 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EE--EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC------------EE--EECCCccHHHHHHH
Confidence 55788999999 4677777777765444799999999888888763211 01 1221111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.....+|+|+.+-. . ..++.+.+.|++||++++.-.
T Consensus 204 ~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG----R-----DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC----G-----GGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc----h-----HHHHHHHHHhcCCCEEEEEec
Confidence 11236999986644 1 356778889999999988643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.018 Score=50.41 Aligned_cols=95 Identities=15% Similarity=-0.033 Sum_probs=62.2
Q ss_pred CCccEEEeeccc-cHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCC-CCCCCCCCce
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL-QDFTPETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~-~~~~~~~~~f 231 (277)
++.+||-+|+|. |..+..+++.. ..+|+++|.|+.-++.+++.-.. .-+++.. .+. ..+. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~~~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD---------YVSEMKDAESLINKLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS---------EEECHHHHHHHHHHHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC---------EEeccccchHHHHHhh-cCCCc
Confidence 678999999974 77778787765 44799999999999988764221 1011100 010 0110 12379
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+-.-.- . ..++.+.+.|+|||++++.-
T Consensus 240 D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 240 SIAIDLVGT------E--ETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEEEESSCC------H--HHHHHHHHHEEEEEEEEECC
T ss_pred cEEEECCCC------h--HHHHHHHHHhhcCCEEEEeC
Confidence 999855431 1 46788889999999998763
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.1 Score=45.08 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=60.9
Q ss_pred cEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCCCCCCceeEEec
Q 023787 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~Vi~ 236 (277)
+||-+|+ |.|..+..+++....+|++++.|+.-++.+++.-.. .-++....+ ... ...+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~~--~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN---------RILSRDEFAESRP--LEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS---------EEEEGGGSSCCCS--SCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEecCCHHHHHh--hcCCCccEEEE
Confidence 4999997 578888888877555899999999999999774322 111111111 111 22357999875
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+- . . ..+..+.+.|+|+|++++.-
T Consensus 218 ~~-----g--~--~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 218 TV-----G--D--KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp SS-----C--H--HHHHHHHHTEEEEEEEEECC
T ss_pred CC-----C--c--HHHHHHHHHHhcCCEEEEEe
Confidence 42 2 2 37888899999999998864
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.12 Score=45.69 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=62.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..+.. +. .++.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT------------DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc------------eEEeccccchhHHHHHHH
Confidence 56778999999874 7778878776544 799999999999988753211 01110 00 0110
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
...+.+|+|+-+-.- ...+..+.+.|+|| |++++.-
T Consensus 258 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 258 MTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 011369998854321 14678888999999 9998764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.21 Score=43.79 Aligned_cols=93 Identities=14% Similarity=-0.030 Sum_probs=61.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|+ |.|..+..++.....+|+++|.++.-++.+++.-.. .. .|..+..
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~--~~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA------------AG--FNYKKEDFSEATLK 225 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EE--EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc------------EE--EecCChHHHHHHHH
Confidence 567889999984 678877777766555799999999998888553211 01 1111110
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.....+|+|+.+-.- ..+..+.+.|++||++++.-.
T Consensus 226 ~~~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 226 FTKGAGVNLILDCIGG---------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp HTTTSCEEEEEESSCG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred HhcCCCceEEEECCCc---------hHHHHHHHhccCCCEEEEEec
Confidence 112469999865431 235667788999999988643
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.1 Score=45.63 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=62.9
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC---CCC----
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT---- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~---- 225 (277)
..++.+||-+|+ |.|..+..++.....+|+++|.++..++.+++. .. + ...|.. ++.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~-g~------------~-~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI-GG------------E-VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT-TC------------C-EEEETTTCSCHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc-CC------------c-eEEecCccHhHHHHHH
Confidence 557789999998 578887777765444799999998888877653 11 0 111322 110
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...+.+|+|+.+-.. ...++.+.+.|++||++++.-.
T Consensus 233 ~~~~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHHTSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred HHhCCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence 001269999865431 1477888999999999987643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.19 Score=44.53 Aligned_cols=96 Identities=15% Similarity=0.006 Sum_probs=63.2
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC--CCCCC-----
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQDFT----- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~----- 225 (277)
..++.+||-+|+| .|..+..+++. +..+|+++|.++.-++.+++.-.. . .+... -.++.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~---vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN---------E---FVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC---------E---EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------E---EEccccCchhHHHHHHH
Confidence 5678899999997 47888877766 444799999999999988753221 0 11110 01110
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (277)
...+.+|+|+-+-.- ...+..+.+.|++| |++++.-.
T Consensus 259 ~~~gg~D~vid~~g~--------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 259 LTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred hcCCCCCEEEECCCC--------HHHHHHHHHHhhccCCEEEEEcc
Confidence 112479999854331 14678889999997 99988643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.17 Score=44.66 Aligned_cols=96 Identities=16% Similarity=-0.012 Sum_probs=62.3
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCC-----C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT-----P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-----~ 226 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..++. .+. .++. .
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------~vi~~--~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT---------ECINP--QDFSKPIQEVLIEM 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS---------EEECG--GGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEecc--ccccccHHHHHHHH
Confidence 56788999999874 7777777765443 799999999999988764221 00100 010 0110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
..+.+|+|+-+-.- ...++.+.+.|+|+ |++++.-
T Consensus 257 ~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 257 TDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp TTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred hCCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 12369999854321 14678888999999 9998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.11 Score=45.16 Aligned_cols=59 Identities=7% Similarity=-0.031 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..++..++... ..++..|||.-||+|..+...... ..+.+|+|+++.+.+.+++++...
T Consensus 239 ~~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 239 AKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp THHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhc
Confidence 34455554322 347789999999999999866544 457999999999999999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.14 Score=44.67 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=63.2
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+..+ .++. .
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD------------IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEESS-TTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEecCc-hhHHHHHHHHh
Confidence 567889999997 578888888876555899999999988888874221 111112 2111 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+|+|+.+-.- ..+..+.+.|++||++++.-
T Consensus 224 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 224 GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 12369999865431 24677888999999999863
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.13 Score=45.49 Aligned_cols=96 Identities=14% Similarity=-0.093 Sum_probs=62.2
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCC-----C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT-----P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-----~ 226 (277)
..++.+||-+|+|. |..+..+++.. ..+|+++|.|+.-++.+++.-.. ..++. .+. .++. .
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~--~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT---------ECLNP--KDYDKPIYEVICEK 257 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS---------EEECG--GGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc---------EEEec--ccccchHHHHHHHH
Confidence 56788999999874 77777777654 43799999999999988753211 00110 000 0110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
..+.+|+|+-.-.- ...+..+.+.|++| |++++.-
T Consensus 258 t~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 258 TNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp TTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred hCCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 12379999854321 14678888999999 9998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.34 Score=42.77 Aligned_cols=96 Identities=14% Similarity=-0.082 Sum_probs=62.2
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCC-----C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT-----P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-----~ 226 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..++. .+. .++. .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~--~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT---------DCLNP--RELDKPVQDVITEL 261 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---------EEECG--GGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc---------EEEcc--ccccchHHHHHHHH
Confidence 56788999999874 7788878876544 799999999998888753221 00100 000 0110 0
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
..+.+|+|+-+-.- ...++.+.+.|++| |++++.-
T Consensus 262 ~~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 262 TAGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HTSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred hCCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 11369998854321 14678888999999 9998753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.72 E-value=0.24 Score=43.69 Aligned_cols=95 Identities=13% Similarity=-0.056 Sum_probs=62.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (277)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+.. +. .++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------------ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------eEecccccchhHHHHHHH
Confidence 56778999999875 7778878776544 799999999999988753211 01110 00 0110
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
...+.+|+|+-+-.- ...+..+.+.|++| |++++.-
T Consensus 257 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 257 MSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HhCCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 112369998854321 14677888999999 9998763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.16 Score=44.73 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=63.1
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
..++.+||-+| .|.|..+..+++....+|++++.+++-++.+++.-.. ..+..+-.++. ..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCD------------RPINYKTEPVGTVLKQEY 228 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCc------------EEEecCChhHHHHHHHhc
Confidence 45778999999 5688888888876555799999999888888763111 11111111110 01
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+|+|+.+-. . ..++.+.+.|+++|++++.-
T Consensus 229 ~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 229 PEGVDVVYESVG-------G--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp TTCEEEEEECSC-------T--HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCC-------H--HHHHHHHHHHhcCCEEEEEe
Confidence 246999986543 1 46778889999999998864
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.25 Score=42.83 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=62.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|+ |.|..+..++.....+|+++|.++.-++.+++.-.. .. .|..+..
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~------------~~--~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCH------------HT--INYSTQDFAEVVRE 208 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EE--EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EE--EECCCHHHHHHHHH
Confidence 557789999995 678888777766545799999999888888763211 01 1222111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.....+|+|+.+-.- ..++.+.+.|++||++++.-.
T Consensus 209 ~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEEec
Confidence 012369999865431 356778889999999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.1 Score=44.93 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=59.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-+|+| .|..+..+++....+|++++ |+.-++.+++.-.. ..+ .|...+ .+.+|+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~-~d~~~v---~~g~Dv 202 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR------------HLY-REPSQV---TQKYFA 202 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE------------EEE-SSGGGC---CSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC------------EEE-cCHHHh---CCCccE
Confidence 5678999999996 47888888776444899999 99888888774221 111 132222 368999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+-+-.- ..+..+.+.|+|||++++.
T Consensus 203 v~d~~g~---------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IFDAVNS---------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EECC----------------TTGGGEEEEEEEEEE
T ss_pred EEECCCc---------hhHHHHHHHhcCCCEEEEE
Confidence 9854331 1235677899999999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.61 Score=34.83 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=56.1
Q ss_pred CccEEEeeccc-cHHHHHHH-HhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 158 HLVALDCGSGI-GRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 158 ~~~VLDiGcGt-G~~s~~l~-~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
..+|+=+|||. |......+ +.+. .|+++|.+++.++.+++. .+.++.+|..+.. ..-..+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-------------g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-------------GVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-------------CCCEEECCCCCHHHHHhcCcccC
Confidence 35899999974 44333333 3344 599999999998887652 2456777776532 112468
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|++...- +.....+....+.+.|+..++..
T Consensus 73 d~vi~~~~~-----~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 73 KWLILTIPN-----GYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp SEEEECCSC-----HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CEEEEECCC-----hHHHHHHHHHHHHHCCCCeEEEE
Confidence 888765431 12122344456667888877654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.14 Score=51.20 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=41.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
....+++|+=||.|.++..+...++ ..+.++|+++...+.-+.++..
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~ 585 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG 585 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 4567999999999999999988887 5688999999999988888754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.08 Score=46.24 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=59.7
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-------C
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~ 227 (277)
++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++. .. ...|..+..+ .
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~--------------~v~~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD--------------RLVNPLEEDLLEVVRRVT 228 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS--------------EEECTTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH--------------hccCcCccCHHHHHHHhc
Confidence 778999999863 7777777776544 799999998877776553 22 0112111000 0
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+|+|+..-.- ...++.+.+.|+++|++++.-
T Consensus 229 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 229 GSGVEVLLEFSGN--------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 2369999855431 146778888999999998763
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.16 Score=44.48 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
..++.+||-+| .|.|..+..+++....+|+++|.++.-++.+++.-.. ..+...-.++. ..
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK------------RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------------EEEeCCchHHHHHHHHHh
Confidence 56788999995 4578888888876555799999999999988874322 11111111110 00
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+.+|+|+.+-.- ..+..+.+.|++||++++.-
T Consensus 233 ~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 233 GQGVDIILDMIGA---------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred CCCceEEEECCCH---------HHHHHHHHHhccCCEEEEEE
Confidence 2469999865431 25667788999999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.39 Score=43.69 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=63.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC----------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---------- 222 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~---------- 222 (277)
..++.+||-+|+ |.|..+..+++....++++++.++.-++.+++.-.. ..+++...|..
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE---------AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC---------EEEETTTTTCCSEEETTEECH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc---------EEEecCcCcccccccccccch
Confidence 567889999997 578888888877666799999999999988764322 00110001110
Q ss_pred --------CCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 223 --------DFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 223 --------~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+. .....+|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG-------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC-------H--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC-------c--hhHHHHHHHhhCCcEEEEEe
Confidence 000 01247999885433 2 46777888999999998853
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.37 Score=42.12 Aligned_cols=93 Identities=8% Similarity=-0.060 Sum_probs=62.2
Q ss_pred CCCC--ccEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023787 155 NNQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (277)
Q Consensus 155 ~~~~--~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (277)
..++ .+||-.|+ |.|..+..++..... +|+++|.++.-++.+++.+.. . ...|..+..
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~--------~-----~~~d~~~~~~~~~ 222 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF--------D-----AAINYKKDNVAEQ 222 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC--------S-----EEEETTTSCHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--------c-----eEEecCchHHHHH
Confidence 4566 89999997 577777777766544 799999999888888764422 0 111222111
Q ss_pred ---CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+.+-. . ..++.+.+.|++||++++.-
T Consensus 223 ~~~~~~~~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNVG-------G--NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHCTTCEEEEEESCC-------H--HHHHHHHHTEEEEEEEEECC
T ss_pred HHHhcCCCCCEEEECCC-------H--HHHHHHHHHhccCcEEEEEC
Confidence 01126999986544 1 46788889999999998763
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.06 Score=46.22 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=39.6
Q ss_pred ceeEEEcCCCCC-C-CCCCceeEEecchhhhcCCh--------------h----hHHHHHHHHHhcCCCCcEEEEE
Q 023787 213 ATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTD--------------D----DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 213 ~~~~~~~d~~~~-~-~~~~~fD~Vi~~~~l~~~~~--------------~----d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++++|..+. . .++++||+|+++-......+ + .+..+++++.++|||||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 467888887663 2 45679999998866532110 1 1356788999999999999875
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=50.47 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=39.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
.+..+|+|+=||.|.++.-+-..+ +.-+.++|+++.+++.-+.|+..
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~ 262 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ 262 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC
Confidence 456799999999999999887665 55689999999999999888654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.18 Score=43.89 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=45.7
Q ss_pred chHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCH---HHHHHHHHHhCCC
Q 023787 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE 203 (277)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~---~~l~~a~~~~~~~ 203 (277)
-+..++..++... ..++..|||.-||+|..+......+ .+.+|+|+++ ..++.+++++...
T Consensus 227 kp~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 227 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence 3455566655433 3477899999999999998766555 4699999999 9999999998653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.16 Score=43.93 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCCc-cEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023787 156 NQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (277)
Q Consensus 156 ~~~~-~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (277)
.++. +||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. .-++....+.... ....+.+
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------EEEECC---------CCSCCE
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc---------EEEecCCcHHHHHHHhcCCcc
Confidence 3454 7999997 678888888876555799999998888888653211 1111111110000 1122479
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 218 d~vid~~g-------~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 218 AAAVDPVG-------G--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEECST-------T--TTHHHHHHTEEEEEEEEECS
T ss_pred cEEEECCc-------H--HHHHHHHHhhccCCEEEEEe
Confidence 99885533 1 24667788999999998763
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.2 Score=43.94 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=57.4
Q ss_pred ccEEEeecc-ccHHH-HHHH-HhCCCc-EEEEeCCHH---HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC----
Q 023787 159 LVALDCGSG-IGRIT-KNLL-IRYFNE-VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (277)
Q Consensus 159 ~~VLDiGcG-tG~~s-~~l~-~~~~~~-v~gvD~S~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---- 227 (277)
.+||-+|+| .|..+ ..++ +....+ |+++|.++. -++.+++.-. +.. |..+..+.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa-------------~~v--~~~~~~~~~i~~ 238 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA-------------TYV--DSRQTPVEDVPD 238 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC-------------EEE--ETTTSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC-------------ccc--CCCccCHHHHHH
Confidence 899999985 46777 7777 544334 999999988 7888865321 111 21110000
Q ss_pred -CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+.||+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 239 ~~gg~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 239 VYEQMDFIYEATGF------P--KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HSCCEEEEEECSCC------H--HHHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCCEEEECCCC------h--HHHHHHHHHHhcCCEEEEEeC
Confidence 1379999854321 1 467888899999999988643
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.44 Score=42.18 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE---EcCCC-CCC--C
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPLQ-DFT--P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~---~~d~~-~~~--~ 226 (277)
..++.+||-+|+| .|..+..+++... .+|++++.|+.-++.+++.-.. .-++.. ..++. .+. .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD---------LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS---------EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc---------EEEeccccCcchHHHHHHHHh
Confidence 4567899999976 4778888887655 4899999999999988753211 001100 00100 000 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....+|+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 264 ~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 264 HGRGADFILEATGD------S--RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCcEEEECCCC------H--HHHHHHHHHHhcCCEEEEEec
Confidence 11369999854331 1 356778889999999987643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.85 Score=39.52 Aligned_cols=98 Identities=17% Similarity=-0.016 Sum_probs=60.3
Q ss_pred CCCCccEEEeecccc-HHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C--CCCC
Q 023787 155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~ 229 (277)
..++.+||-+|+|.+ ..+..+++. +..+|+++|.+++-++.+++.-.. .-+++...|..+. . ....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~---------~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD---------VTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS---------EEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe---------EEEeCCCCCHHHHhhhhcCCC
Confidence 457889999999864 445545543 456899999999988888765433 1122211111100 0 1123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|.++....- . ..+..+.+.|+++|.+++.-
T Consensus 232 g~d~~~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAVA------R--IAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCSC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEeccC------c--chhheeheeecCCceEEEEe
Confidence 56666643321 2 56788889999999998763
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.00 E-value=1.3 Score=38.29 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=61.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|+|. |..+..+++.. ...++++|.++.-++.+++.-.. .. .|..+..
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~------------~~--i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM------------QT--FNSSEMSAPQMQSV 223 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EE--EETTTSCHHHHHHH
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe------------EE--EeCCCCCHHHHHHh
Confidence 56788999999974 55566666554 44678999999999988775322 11 1111111
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.....+|+|+..-.. . ..++.+.+.|++||.+++.-..
T Consensus 224 ~~~~~g~d~v~d~~G~------~--~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 224 LRELRFNQLILETAGV------P--QTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp HGGGCSSEEEEECSCS------H--HHHHHHHHHCCTTCEEEECCCC
T ss_pred hcccCCcccccccccc------c--chhhhhhheecCCeEEEEEecc
Confidence 112357877644321 1 5677888999999999986443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.18 Score=43.68 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=60.4
Q ss_pred CCCc-cEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023787 156 NQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (277)
Q Consensus 156 ~~~~-~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (277)
.++. +||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..++....+.... ....+.+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------EVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------EEEEHHHHCSSCCCSSCCCCE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEEECCCchHHHHHHhhcCCc
Confidence 3454 8999997 577888777765444699999998888888764221 1111111111111 1122469
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 219 d~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 219 QGAVDPVG-------G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEESCC-------T--HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCc-------H--HHHHHHHHhhcCCCEEEEEe
Confidence 99885433 2 35778889999999998763
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.82 E-value=0.04 Score=47.26 Aligned_cols=93 Identities=13% Similarity=-0.046 Sum_probs=60.0
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCce
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~f 231 (277)
..++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..++... .++.+. . +.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~---------~~~~~~~~~~~~~~-~--~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE---------EAATYAEVPERAKA-W--GGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS---------EEEEGGGHHHHHHH-T--TSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC---------EEEECCcchhHHHH-h--cCc
Confidence 346789999997 578888888776555899999999888888653111 0011000 111000 1 469
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+. -. . ..++.+.+.|+++|++++.-
T Consensus 191 d~vid-~g-------~--~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 191 DLVLE-VR-------G--KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEE-CS-------C--TTHHHHHTTEEEEEEEEEC-
T ss_pred eEEEE-CC-------H--HHHHHHHHhhccCCEEEEEe
Confidence 99986 32 1 25677888999999998753
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.67 E-value=0.08 Score=46.63 Aligned_cols=96 Identities=19% Similarity=0.070 Sum_probs=60.5
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-CC--CCCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF--TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~ 230 (277)
..++.+||-+|+| .|..+..+++....+|+++|.|+.-++.+++.-.. ..+...-. ++ ... +.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~-~~ 243 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYF-DT 243 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSC-SC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCcCchHHHHHhh-cC
Confidence 5578899999986 47777777765444699999999988888764221 11111000 11 011 47
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+.+-.-. + ...++.+.+.|+|||++++.-
T Consensus 244 ~D~vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 244 FDLIVVCASSL--T----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEEECCSCS--T----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCEEEECCCCC--c----HHHHHHHHHHhcCCCEEEEec
Confidence 99998554320 0 023455678899999998753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.77 Score=39.95 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCccEEEee-cc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CC-----CCC
Q 023787 157 QHLVALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-----PET 228 (277)
Q Consensus 157 ~~~~VLDiG-cG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----~~~ 228 (277)
++.+||-+| +| .|..+..+++....+|++++.++.-++.+++.-... . .+..+ +. ...
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------------v--i~~~~~~~~~~~~~~~ 215 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADI------------V--LNHKESLLNQFKTQGI 215 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSE------------E--ECTTSCHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE------------E--EECCccHHHHHHHhCC
Confidence 678999994 44 677888787765558999999999999988743220 0 11111 00 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|+|+-+-. -...+..+.+.|+|||+++..
T Consensus 216 ~g~Dvv~d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 216 ELVDYVFCTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CCEEEEEESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred CCccEEEECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 47999986432 125678888999999999764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.91 E-value=0.57 Score=42.37 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=63.3
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-.|+ |.|..+..+++....++++++.++.-++.+++.-.. ..++....++.+..
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD---------LVINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---------CEEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEeccccccccccccccccc
Confidence 567889999997 568888888877666799999999999988653211 11111111221100
Q ss_pred -------------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -------------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+|+-+-. . ..++.+.+.|++||.+++.-
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTG-------R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSC-------H--HHHHHHHHHSCTTCEEEESC
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCC-------c--hHHHHHHHHHhcCCEEEEEe
Confidence 00246899885443 1 35677788999999998864
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.49 Score=41.55 Aligned_cols=88 Identities=20% Similarity=0.135 Sum_probs=57.0
Q ss_pred CccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCH---HHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC------
Q 023787 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (277)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------ 227 (277)
+.+||-+|+| .|..+..+++....+|+++|.++ .-++.+++.-. +.. | .+ .+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga-------------~~v--~-~~-~~~~~~~~~ 243 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT-------------NYY--N-SS-NGYDKLKDS 243 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC-------------EEE--E-CT-TCSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC-------------cee--c-hH-HHHHHHHHh
Confidence 7899999985 35566666654333799999987 77777765321 111 2 21 111
Q ss_pred CCceeEEecchhhhcCChhhHHHHH-HHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l-~~~~r~LkpGG~lii~e~ 270 (277)
.+.+|+|+.+-.. + ..+ +.+.+.|++||++++.-.
T Consensus 244 ~~~~d~vid~~g~---~-----~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 244 VGKFDVIIDATGA---D-----VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp HCCEEEEEECCCC---C-----THHHHHHGGGEEEEEEEEECSC
T ss_pred CCCCCEEEECCCC---h-----HHHHHHHHHHHhcCCEEEEEec
Confidence 1469999865432 1 245 788899999999987643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.46 Score=41.35 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|+ |.|..+..+++....+|+++ .++.-++.+++.-.. .+. .-.++. .
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~-------------~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGAT-------------PID-ASREPEDYAAEHT 212 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSE-------------EEE-TTSCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCC-------------Eec-cCCCHHHHHHHHh
Confidence 567889999994 56888888887655579999 888888888764221 111 111111 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+|+|+-+-. . ..+..+.+.|+++|.+++.-
T Consensus 213 ~~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 213 AGQGFDLVYDTLG-------G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp TTSCEEEEEESSC-------T--HHHHHHHHHEEEEEEEEESC
T ss_pred cCCCceEEEECCC-------c--HHHHHHHHHHhcCCeEEEEc
Confidence 1247999985433 1 46777888999999998753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.60 E-value=1.8 Score=33.68 Aligned_cols=92 Identities=15% Similarity=-0.017 Sum_probs=53.1
Q ss_pred CccEEEeeccc-cHH-HHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----C-CCC
Q 023787 158 HLVALDCGSGI-GRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-ETG 229 (277)
Q Consensus 158 ~~~VLDiGcGt-G~~-s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~-~~~ 229 (277)
+.+|+=+|||. |.. +..|.+. +. .|+++|.++..++.+++. .+..+.+|..+.. . .-.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-------------g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-------------GRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-------------TCCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-------------CCCEEEcCCCCHHHHHhccCCC
Confidence 46899999873 433 3333444 55 599999999888776642 1234455554321 1 124
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+.... +......+-...+.+.|++.++..
T Consensus 105 ~ad~vi~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 105 HVKLVLLAMP-----HHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CCCEEEECCS-----SHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEeCC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 6898886432 112223333455667777777764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=1.8 Score=37.80 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCC--------------CCC--CC-CCCcceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE--------------NHM--AP-DMHKATNFF 217 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~--------------~~~--~~-~~~~~~~~~ 217 (277)
+...|+-+|||-=.....+..... ..++=||. |..++.=++.+... ... +. ....+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 456899999998777776765432 25777776 44444322222210 000 00 012456778
Q ss_pred EcCCCCC----------CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 218 CVPLQDF----------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 218 ~~d~~~~----------~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.+|+.+. .+....-=++++-.++.|++.++...+|+.+.+.. |+|.+++-|.+.+
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p 233 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNM 233 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC
Confidence 8888763 13334556888889999999999999999999876 5666667787754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.99 Score=38.75 Aligned_cols=92 Identities=15% Similarity=-0.014 Sum_probs=58.1
Q ss_pred CCCCccEEEee-c-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCce
Q 023787 155 NNQHLVALDCG-S-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiG-c-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~f 231 (277)
..++.+||-+| + |.|..+..+++....+|++++ ++.-++.+++.-.. ..+...-.+ +...-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE------------QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS------------EEEETTTSCHHHHCCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC------------EEEeCCCcchhhhhccCC
Confidence 56788999997 4 468888888877555798887 55557777664222 111111111 11011469
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|+-+-. . ..+..+.+.|++||+++..
T Consensus 217 D~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVG-------G--DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSC-------H--HHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCC-------c--HHHHHHHHhccCCCEEEEe
Confidence 99985433 1 2337788999999999875
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=0.24 Score=47.43 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCccEEEeeccccHHHHHHHHhC----------C-C--cEEEEeC---CHHHHHHHHHHhCC-----------CC--CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY----------F-N--EVDLLEP---VSHFLDAARESLAP-----------EN--HMA 207 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~----------~-~--~v~gvD~---S~~~l~~a~~~~~~-----------~~--~~~ 207 (277)
+..+|||+|-|+|......+... . . +++.+|. +++.+..+-..... .. +.+
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999999877665542 1 1 5899998 77777644332110 00 000
Q ss_pred C------CCCcceeEEEcCCCCCC--CC---CCceeEEecchh-hhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 208 P------DMHKATNFFCVPLQDFT--PE---TGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 208 ~------~~~~~~~~~~~d~~~~~--~~---~~~fD~Vi~~~~-l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
. .....++...+|+.+.- .. ...||+|+.-.. -..-|+-=-..+|+.++++++|||.+.-
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0 00123445555654321 11 367999986432 1111110024789999999999999764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.02 E-value=1 Score=37.23 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 226 (277)
.++++|-.|++.|. ++..|++.+. +|++++.++..++...+.+. .++.++.+|+.+...
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG----------PRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CcceEEEccCCCHHHHHHHHHH
Confidence 45678888876653 4445555566 59999999988877766652 357888899887431
Q ss_pred ---CCCceeEEecchhh------hcCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 227 ---ETGRYDVIWVQWCI------GHLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~l------~~~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
.-+..|+++.+-.+ ...+.+++.. +.+.+...++++|.+++.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 01478999865432 2334444333 345566667778888775
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=2.1 Score=36.76 Aligned_cols=89 Identities=13% Similarity=0.013 Sum_probs=57.5
Q ss_pred CccEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeE
Q 023787 158 HLVALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~ 233 (277)
..+|.=||+|. |.++..+.+.+.. +|+++|.++..++.+++.-. +.-...+..+ .. ...|+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~------------~~~~~~~~~~~~~---~~aDv 97 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------------IDEGTTSIAKVED---FSPDF 97 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------------CSEEESCTTGGGG---GCCSE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC------------cchhcCCHHHHhh---ccCCE
Confidence 36899999884 3455556656653 69999999988887765311 1112233332 11 35798
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
|+.+-. ......+++++...++||.+++
T Consensus 98 Vilavp-----~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 98 VMLSSP-----VRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHSCTTCEEE
T ss_pred EEEeCC-----HHHHHHHHHHHhhccCCCcEEE
Confidence 886644 3345678899999999987654
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.38 Score=43.49 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=35.7
Q ss_pred CccEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhC
Q 023787 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
+.+|+|+|.|+|.++..+++.. ..+++.||+|+.+.+.-++++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4799999999999988887542 2379999999998887777764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.73 E-value=4.1 Score=29.50 Aligned_cols=90 Identities=9% Similarity=0.000 Sum_probs=49.5
Q ss_pred CccEEEeeccc-cHH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 158 HLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 158 ~~~VLDiGcGt-G~~-s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
+++|+=+|+|. |.. +..|.+.+. +|+++|.++..++..++... +.++.+|..+.. .....+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~------------~~~~~~d~~~~~~l~~~~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEID------------ALVINGDCTKIKTLEDAGIEDA 70 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCS------------SEEEESCTTSHHHHHHTTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcC------------cEEEEcCCCCHHHHHHcCcccC
Confidence 36789898863 222 222333343 69999999987776654321 234455544321 112368
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
|+|+..-.. ......+..+.+.+.++-++
T Consensus 71 d~vi~~~~~-----~~~~~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 71 DMYIAVTGK-----EEVNLMSSLLAKSYGINKTI 99 (140)
T ss_dssp SEEEECCSC-----HHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEeeCC-----chHHHHHHHHHHHcCCCEEE
Confidence 988876321 22334555566667776433
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.34 Score=46.52 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCccEEEeeccccHHHHHHHHhC----------C---CcEEEEeC---CHHHHHHHHHH-----------hCCCCCC--C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY----------F---NEVDLLEP---VSHFLDAARES-----------LAPENHM--A 207 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~----------~---~~v~gvD~---S~~~l~~a~~~-----------~~~~~~~--~ 207 (277)
+..+|+|+|.|+|.....+++.. . -+++.+|. +...+..+-.. +...... +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 55799999999999887766542 1 16899998 55555443221 1110000 0
Q ss_pred ------CCCCcceeEEEcCCCCCC--CC---CCceeEEecchh-hhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 208 ------PDMHKATNFFCVPLQDFT--PE---TGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 208 ------~~~~~~~~~~~~d~~~~~--~~---~~~fD~Vi~~~~-l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
......+++..+|+.+.. .. .+.||.++.-.. -...++-=-..++..+.++++|||.+.-
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 000235666677765432 11 368999986432 1121210124799999999999998763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=1.7 Score=39.02 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=59.3
Q ss_pred CccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
..+|+=+|+|. |......+......|+++|.++..++.+++. ...++.+|..+.. ..-...|
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-------------g~~vi~GDat~~~~L~~agi~~A~ 70 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAE 70 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-------------TCCCEESCTTCHHHHHHTTTTTCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-------------CCeEEEcCCCCHHHHHhcCCCccC
Confidence 45799999874 3333333333333599999999999988753 1345677877642 2224688
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++... ++.....+....+.+.|...++..
T Consensus 71 ~viv~~~-----~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 71 VLINAID-----DPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp EEEECCS-----SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEECCC-----ChHHHHHHHHHHHHhCCCCeEEEE
Confidence 8876543 224445666677778888777764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.54 E-value=0.16 Score=44.22 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=40.3
Q ss_pred cceeEEEcCCCC-CC-CCCCceeEEecchhhhcCC------------hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 212 KATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLT------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 212 ~~~~~~~~d~~~-~~-~~~~~fD~Vi~~~~l~~~~------------~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
....++++|..+ +. .++++||+|++........ ...+...+.++.++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 356778887654 22 4567999999876543211 014668899999999999999885
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.48 Score=41.75 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=57.0
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCC
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 229 (277)
..++.+||-+| .|.|..+..+++....+|++++ ++.-++.+++.-.. ..+...-.++. ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGAD------------DVIDYKSGSVEEQLKSLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSSCHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCC------------EEEECCchHHHHHHhhcC
Confidence 45678999999 3578888888876555799988 66777777543111 01111101100 0113
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+-+-.-. . ..+....+.|++||++++.
T Consensus 248 g~D~vid~~g~~-----~--~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 248 PFDFILDNVGGS-----T--ETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CBSEEEESSCTT-----H--HHHGGGGBCSSSCCEEEES
T ss_pred CCCEEEECCCCh-----h--hhhHHHHHhhcCCcEEEEe
Confidence 689988543311 1 2456777899999999875
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.84 Score=47.05 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
...+++|+=||.|.++..+...++ .-+.++|+++.+++.-+.++..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~ 896 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG 896 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 457899999999999999888886 4689999999999988888654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.14 E-value=4.3 Score=35.78 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=65.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
.+.+||.++.+.|.++..++.. .++.+.-|--.....+.++..+++. ...+.+... +... .+.||+|+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~----~~~~~~~~~-~~~~---~~~~~~v~~ 106 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGID----ESSVKFLDS-TADY---PQQPGVVLI 106 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCC----GGGSEEEET-TSCC---CSSCSEEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCC----ccceEeccc-cccc---ccCCCEEEE
Confidence 3468999999999999877643 3455544655556667777665542 123444322 2222 367999887
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...= + ...+...|..+...|+||+.+++..
T Consensus 107 ~lpk-~--~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 107 KVPK-T--LALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp ECCS-C--HHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred EcCC-C--HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 5542 1 2357788999999999999998763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.45 E-value=4.1 Score=29.95 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=51.3
Q ss_pred CccEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 158 ~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
..+|+-+|||. |. ++..|.+.+. +|+++|.++..++.+++. ...++.+|..+.. ..-..+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------------GFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------------CCcEEECCCCCHHHHHhCCcccC
Confidence 35799999964 32 2333333455 599999999988877652 1455667776532 122468
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|+|+.... +.+....+....+.+. ...++.
T Consensus 72 d~vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 72 SAVLITGS-----DDEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp SEEEECCS-----CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred CEEEEecC-----CHHHHHHHHHHHHHhC-CceEEE
Confidence 88876544 1122233344444455 444444
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.40 E-value=2.6 Score=35.02 Aligned_cols=93 Identities=9% Similarity=-0.059 Sum_probs=56.2
Q ss_pred ccEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 159 LVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++||=.|| |.++..+++.. ..+|++++-++.-.+.... .+++++.+|+.++. -..+|+|+
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------~~~~~~~~D~~d~~--~~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------------SGAEPLLWPGEEPS--LDGVTHLL 68 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------------CCCeEEEecccccc--cCCCCEEE
Confidence 58999995 77777666542 2269999988765544332 24788889998866 35789998
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
...............+++.+.+.-..-+.|++.
T Consensus 69 ~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 69 ISTAPDSGGDPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp ECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred ECCCccccccHHHHHHHHHHHhhcCCceEEEEe
Confidence 766543332222334555444431222455543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=0.3 Score=43.05 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=57.9
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CCCCCCcee
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~fD 232 (277)
++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.+... ..+ |..+ +....+.+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~-----------~v~--~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-----------SFL--VSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS-----------EEE--ETTCHHHHHHTTTCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc-----------eEE--eccCHHHHHHhhCCCC
Confidence 678999999863 66777777665457999999998888777554321 011 1111 000013699
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+.+-... ..++.+.+.|++||+++..-
T Consensus 254 ~vid~~g~~--------~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 254 GIIDTVSAV--------HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEEECCSSC--------CCSHHHHHHEEEEEEEEECC
T ss_pred EEEECCCcH--------HHHHHHHHHHhcCCEEEEEc
Confidence 998654321 13445667889999988763
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=1.9 Score=37.77 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=59.1
Q ss_pred CCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 156 ~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
.++.+||-+|+ |.|..+..+++....+|+++. |+.-++.+++.-.. ..+...-.++. ...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~t~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAE------------EVFDYRAPNLAQTIRTYTK 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSTTHHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCc------------EEEECCCchHHHHHHHHcc
Confidence 57789999998 378888888877555788885 88888877664221 11111111110 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcC-CCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~e 269 (277)
+.+|+|+-+-.- . ..+..+.+.| ++||++++.-
T Consensus 230 g~~d~v~d~~g~------~--~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 230 NNLRYALDCITN------V--ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp TCCCEEEESSCS------H--HHHHHHHHHSCTTCEEEEESS
T ss_pred CCccEEEECCCc------h--HHHHHHHHHhhcCCCEEEEEe
Confidence 459998854331 1 4567777888 6999998753
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.09 E-value=1.7 Score=36.23 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCC------------HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (277)
.+.+||-.|++.|. ++..|++.+. +|+++|.+ ..-++.+...+... ..++.++.+|+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~ 80 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------GRKAYTAEVDV 80 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------TSCEEEEECCT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhc-------CCceEEEEccC
Confidence 45678888876653 4455555565 59999987 66666655544332 24578888998
Q ss_pred CCCCC-----C-----CCceeEEecchhhhc----CChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 222 QDFTP-----E-----TGRYDVIWVQWCIGH----LTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 222 ~~~~~-----~-----~~~fD~Vi~~~~l~~----~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
.+... . -+..|++|.+-.+.. .+.+++.. +++.+...++.+|.+++.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 87430 0 136899986654322 33333333 346677777888888765
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=2 Score=36.30 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=64.0
Q ss_pred CCccEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023787 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (277)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (277)
.++++|-.|++ .|. ++..|++.+. +|+.++.++...+.+++.... ..++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEE--------LGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHH--------HTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHh--------cCCceEEECCCCCHHHHHHHH
Confidence 45689999976 343 4555666666 599999987655554444332 124678888988742 0
Q ss_pred -----CCCceeEEecchhhh----------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023787 227 -----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 -----~~~~fD~Vi~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (277)
.-++.|++|.+-.+. ..+.+++. .+++.+...++.+|.+++.-
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 014789998664332 23333332 34556677778889888763
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=87.72 E-value=0.99 Score=40.47 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=38.3
Q ss_pred CccEEEeeccccHHHHHHHHhC--CCc----EEEEeCCHHHHHHHHHHhCC
Q 023787 158 HLVALDCGSGIGRITKNLLIRY--FNE----VDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~--~~~----v~gvD~S~~~l~~a~~~~~~ 202 (277)
..+|+|+=||.|..+..+...+ +.- |.++|+++.+++.-+.++..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 4699999999999999888776 344 88899999999988888865
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=0.18 Score=44.33 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=57.8
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~V 234 (277)
++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++.+... ..++.... .+.+. .+.+|+|
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~---~~g~D~v 248 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD--------DYVIGSDQAKMSEL---ADSLDYV 248 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS--------CEEETTCHHHHHHS---TTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc--------eeeccccHHHHHHh---cCCCCEE
Confidence 67899999987 466777777654447999999988888777444321 10110000 00111 1369999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+-+-.-. ..+..+.+.|+|||++++.-
T Consensus 249 id~~g~~--------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 249 IDTVPVH--------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EECCCSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred EECCCCh--------HHHHHHHHHhccCCEEEEeC
Confidence 8543311 23455678999999998764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.38 E-value=6.6 Score=29.33 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=54.3
Q ss_pred CccEEEeeccccHHHHHHHH----hCCCcEEEEeCC-HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023787 158 HLVALDCGSGIGRITKNLLI----RYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~----~~~~~v~gvD~S-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (277)
..+|+=+||| ..+..+++ .+. .|+++|.+ +...+...+.... .+.++.+|..+.. ..-
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i 69 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGD----------NADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCT----------TCEEEESCTTSHHHHHHHTT
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcC----------CCeEEEcCCCCHHHHHHcCh
Confidence 3578888875 44444433 344 59999997 4555444443321 2567778876532 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
...|+|++... ++.....+....+.+.|...++..
T Consensus 70 ~~ad~vi~~~~-----~d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 70 DRCRAILALSD-----NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp TTCSEEEECSS-----CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred hhCCEEEEecC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 46788876643 123345566667777777776654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=4.9 Score=33.06 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=65.8
Q ss_pred CCccEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-----
Q 023787 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (277)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----- 226 (277)
.+.++|-.|++ .|. ++..|++.+. +|++++.+....+.+.+.....+ ..++.++.+|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD------RNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS------SCCCEEEECCCSSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC------CCCceEEeCCCCCHHHHHHHH
Confidence 45688999976 343 4555666666 59999888765555555443321 1257888999987530
Q ss_pred C-----CCceeEEecchhhh----------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023787 227 E-----TGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~-----~~~fD~Vi~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (277)
. -+.+|+++.+-.+. ..+.+++. .+++.+...++++|.+++.-
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 0 13689888654332 23333333 25567777888889888764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=84.56 E-value=0.33 Score=42.83 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=54.7
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|+=+|+| .|..+..++.....+|+++|.++.-++.+++.... .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEEE
Confidence 34799999986 34444444444333799999999988888766532 11111111111100002589998
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+-.....+... -+.+...+.++|||+++..
T Consensus 236 ~~~~~~~~~~~~--li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 236 GAVLVPGRRAPI--LVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp ECCCCTTSSCCC--CBCHHHHTTSCTTCEEEET
T ss_pred ECCCcCCCCCCe--ecCHHHHhhCCCCCEEEEE
Confidence 654332211001 1134456788999987764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=84.07 E-value=4.1 Score=34.28 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHH-HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
.+++||-.|++.|. ++..|++.+. +|++++.+.. ..+...+..... ..++.++.+|+.+.. +.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE-------GVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT-------TCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc-------CCcEEEEECCCCCHHHHHHHHH
Confidence 45678888876653 4445555565 5999988754 344444433332 245788889988742 00
Q ss_pred -----CCceeEEecchh-------hhcCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023787 228 -----TGRYDVIWVQWC-------IGHLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -----~~~fD~Vi~~~~-------l~~~~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (277)
-+..|+++.+-. +..++.+++. .+++.+...++.+|.+++.
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 136899986533 2223444433 3456677778888988775
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=0.46 Score=42.17 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE-EcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~fD~V 234 (277)
++.+|+=+|+|. |......+.....+|+++|.++.-++.+++.+... ...... ..++.+. -..+|+|
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~--------~~~~~~~~~~l~~~---l~~aDvV 235 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR--------IHTRYSSAYELEGA---VKRADLV 235 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS--------SEEEECCHHHHHHH---HHHCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe--------eEeccCCHHHHHHH---HcCCCEE
Confidence 568999999963 44444444443337999999999888887654321 000000 0011110 0257998
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+-......... -+.+++.+.+||||+++..
T Consensus 236 i~~~~~p~~~t~~--li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 236 IGAVLVPGAKAPK--LVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp EECCCCTTSCCCC--CBCHHHHTTSCTTCEEEEG
T ss_pred EECCCcCCCCCcc--eecHHHHhcCCCCcEEEEE
Confidence 8643211101001 1235566789999988764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.91 E-value=6.5 Score=32.40 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=54.7
Q ss_pred CccEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..+|.=||||. |. ++..+...+...|.++|.+++.++.+.+.+. +.. ..+..+.. ...|+|+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g------------~~~-~~~~~~~~---~~~Dvvi 73 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE------------AEY-TTDLAEVN---PYAKLYI 73 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT------------CEE-ESCGGGSC---SCCSEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC------------Cce-eCCHHHHh---cCCCEEE
Confidence 35799999983 32 3444455555448999999988877766532 111 22332221 2579888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+-.- .....++..+...+++|..++-
T Consensus 74 ~av~~-----~~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 74 VSLKD-----SAFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp ECCCH-----HHHHHHHHHHHTTCCTTCEEEE
T ss_pred EecCH-----HHHHHHHHHHHhhcCCCcEEEE
Confidence 66442 2345778888888888776554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.88 E-value=1.5 Score=38.07 Aligned_cols=91 Identities=5% Similarity=-0.060 Sum_probs=54.2
Q ss_pred ccEEEe-ec-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CCCCc
Q 023787 159 LVALDC-GS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PETGR 230 (277)
Q Consensus 159 ~~VLDi-Gc-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 230 (277)
.+||=. |+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .....
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAA------------HVLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCS------------EEEETTSTTHHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEECCcHHHHHHHHHHhcCCC
Confidence 456544 33 356677767665444799999999988888764221 11111111110 00126
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+|+-+-.- ..+..+.+.|++||++++.-.
T Consensus 234 ~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 234 PRIFLDAVTG---------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp CCEEEESSCH---------HHHHHHHHHSCTTCEEEECCC
T ss_pred CcEEEECCCC---------hhHHHHHhhhcCCCEEEEEec
Confidence 8998854431 234667889999999998743
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.58 E-value=0.48 Score=41.87 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=53.3
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|+=+|+| .|......+.....+|+++|.++.-++.+++.+.. .+.....+..++...-..+|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----------~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----------RVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----------SEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----------eEEEecCCHHHHHHHHhCCCEEE
Confidence 45799999986 34444444444333799999999888777664422 11111111111100002579888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+-...... ...-+.+++.+.+||||.++..
T Consensus 235 ~~~g~~~~~--~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 235 GAVLVPGAK--APKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ECCC---------CCSCHHHHTTSCTTCEEEEC
T ss_pred ECCCCCccc--cchhHHHHHHHhhcCCCEEEEE
Confidence 654432100 0011245677788999988764
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.24 E-value=2.4 Score=36.97 Aligned_cols=45 Identities=22% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHH
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~ 199 (277)
..++.+||-+|+| .|..+..+++.. ..+|+++|.|+.-++.+++.
T Consensus 184 ~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l 230 (359)
T 1h2b_A 184 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL 230 (359)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh
Confidence 4577899999986 456666676654 44799999999999988753
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.16 E-value=7.1 Score=32.59 Aligned_cols=77 Identities=22% Similarity=0.151 Sum_probs=51.3
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~----~-- 226 (277)
.+.+||-.|++.|. ++..|++++. +|++++.++.-++.+.+.+...+ ..++.++.+|+.+. . +
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN------HENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT------CCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CCceEEEEccCCCcHHHHHHHHH
Confidence 45678888876552 4455555565 69999999888777766654422 24688899999885 2 0
Q ss_pred ----CCCceeEEecchhh
Q 023787 227 ----ETGRYDVIWVQWCI 240 (277)
Q Consensus 227 ----~~~~fD~Vi~~~~l 240 (277)
.-+..|++|.+-.+
T Consensus 84 ~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHHHSSCCEEEECCCC
T ss_pred HHHHhCCCCCEEEECCcc
Confidence 01478999876543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.03 E-value=2.8 Score=34.62 Aligned_cols=104 Identities=12% Similarity=-0.040 Sum_probs=62.0
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEE-eCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gv-D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
.+.++|-.|++.|. ++..|++.+. +|+.+ +.+....+...+.+... ..++.++.+|+.+.. ..
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKL-------GRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTT-------TSCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHH
Confidence 45678888877663 4455555566 47777 66666666655554332 245778889988743 00
Q ss_pred -----CCceeEEecchhhh-------cCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023787 228 -----TGRYDVIWVQWCIG-------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~-------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (277)
-+..|+++.+-... ..+.+++. .+.+.+...++++|.+++.
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 14789998654322 23333333 2345566667778887765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=2.7 Score=31.71 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=51.2
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (277)
.++.+|+=+|||. |......+.....+|+++|.++.-++.+++ . ....++.+|..+.. ..-..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~---------~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E---------FSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T---------CCSEEEESCTTSHHHHHTTTGGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c---------CCCcEEEecCCCHHHHHHcCccc
Confidence 3567899999874 443333333333369999998765543321 1 11234445543311 11236
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+|+..-.- ......+..+.+.+.|...++..
T Consensus 85 ad~Vi~~~~~-----~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 85 ADMVFAFTND-----DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp CSEEEECSSC-----HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCEEEEEeCC-----cHHHHHHHHHHHHHCCCCeEEEE
Confidence 8888865431 23334455556656666666554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.34 E-value=9.4 Score=31.66 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=52.6
Q ss_pred cEEEeeccc-c-HHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeEEe
Q 023787 160 VALDCGSGI-G-RITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDVIW 235 (277)
Q Consensus 160 ~VLDiGcGt-G-~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~Vi 235 (277)
+|.=||+|. | .++..+...+.. +|+++|.++..++.+++. +. ......+..+.. . ..|+|+
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~--------~~~~~~~~~~~~---~~~aDvVi 67 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--------IDEGTTSIAKVE---DFSPDFVM 67 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--------CSEEESCGGGGG---GTCCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CC--------cccccCCHHHHh---cCCCCEEE
Confidence 578889884 3 334444444442 699999999888776542 11 000112222111 2 578888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+-. ......++.++...++++.+++..
T Consensus 68 lavp-----~~~~~~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 68 LSSP-----VRTFREIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp ECSC-----HHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred EcCC-----HHHHHHHHHHHHhhCCCCcEEEEC
Confidence 6543 334557788888889998866543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=81.62 E-value=5.2 Score=33.11 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeC-CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~-S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
.+.++|-.|++.|. ++..|++.+. +|+.++. +...++...+.+... ..++.++.+|+.+.. +.
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKAL-------GSDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCCHHHHHHHHH
Confidence 45678888877653 4455555566 4887765 455555554444332 245788889988743 00
Q ss_pred -----CCceeEEecchhhh------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEec
Q 023787 228 -----TGRYDVIWVQWCIG------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e~ 270 (277)
-+..|+++.+-... .++.+++. .+.+.+...++++|.+++.-.
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 13689998664432 23434433 345667778888898887643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=81.59 E-value=5.9 Score=32.49 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=48.0
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
.+.++|-.|++.|. ++..|++.+. +|+++|.++.-++...+.+. .++.++.+|+.+.. .
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~ 75 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG----------PAAYAVQMDVTRQDSIDAAIAA 75 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CCceEEEeeCCCHHHHHHHHHH
Confidence 35678888876552 4455555566 59999999888777766653 24678888987642 0
Q ss_pred ---CCCceeEEecchh
Q 023787 227 ---ETGRYDVIWVQWC 239 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~ 239 (277)
.-+..|+++.+-.
T Consensus 76 ~~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 76 TVEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHHSSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 0137899986644
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=81.45 E-value=14 Score=30.12 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=47.1
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (277)
.+++||-.|++.|. ++..|++.+. +|++++.++.-++...+.+... ..++.++.+|+.+.. +.
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 79 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSK-------GFKVEASVCDLSSRSERQELMNT 79 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 34678877775542 3444555555 5999999988776655544321 235778888988642 00
Q ss_pred -----CCceeEEecchh
Q 023787 228 -----TGRYDVIWVQWC 239 (277)
Q Consensus 228 -----~~~fD~Vi~~~~ 239 (277)
.+..|+++.+-.
T Consensus 80 ~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 80 VANHFHGKLNILVNNAG 96 (260)
T ss_dssp HHHHTTTCCCEEEECCC
T ss_pred HHHHcCCCCCEEEECCC
Confidence 057899986654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.87 E-value=5.5 Score=38.14 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-------C--cEEEEeCCHHHHHHHHHHhCCC-------------CCCC-----CC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-------N--EVDLLEPVSHFLDAARESLAPE-------------NHMA-----PD 209 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-------~--~v~gvD~S~~~l~~a~~~~~~~-------------~~~~-----~~ 209 (277)
+...|+-+|||-=.....+..... . .++=||.. +.++.=++.+... .... ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p-~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYS-DLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECH-HHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccH-HHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 457899999998777776764422 2 34455553 3333322333210 0000 00
Q ss_pred CCcceeEEEcCCCCCC----------C-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 210 MHKATNFFCVPLQDFT----------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 210 ~~~~~~~~~~d~~~~~----------~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
...+..++.+|+.+.. + ....-=++++-.++.|++.++...+|+.+.+. |+|.+++.|.+.+
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~ 258 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIP 258 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCT
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecC
Confidence 0135677888988741 1 33455677788899999999999999999864 7888888787654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.65 E-value=5.9 Score=33.06 Aligned_cols=101 Identities=22% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-----C-
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E- 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~- 227 (277)
.++++|-.|++.|. ++..|++.+. +|+++|.++.-++...+.+. .++.++.+|+.+... .
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG----------CGAAACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC----------SSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC----------CcceEEEecCCCHHHHHHHHHH
Confidence 35678888887663 4555665666 59999999888877766652 346778889887420 0
Q ss_pred ----CCceeEEecchhhh------cCChhhHHHH-----------HHHHHhcC--CCCcEEEEE
Q 023787 228 ----TGRYDVIWVQWCIG------HLTDDDFVSF-----------FKRAKVGL--KPGGFFVLK 268 (277)
Q Consensus 228 ----~~~fD~Vi~~~~l~------~~~~~d~~~~-----------l~~~~r~L--kpGG~lii~ 268 (277)
-+..|+++.+-.+. ..+.+++... .+.+...+ +.+|.+++.
T Consensus 97 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~i 160 (277)
T 3gvc_A 97 CVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNL 160 (277)
T ss_dssp HHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 13689998665432 2333443322 34444444 567877765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=80.54 E-value=5.3 Score=33.80 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=52.6
Q ss_pred CccEEEeeccc-c-HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGt-G-~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..+|.=||+|. | .++..+++.+. +|+++|.++..++.+.+.- ......+..+.. ...|+|+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g-------------~~~~~~~~~e~~---~~aDvvi 69 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEG-------------ACGAAASAREFA---GVVDALV 69 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-------------CSEEESSSTTTT---TTCSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC-------------CccccCCHHHHH---hcCCEEE
Confidence 45788999884 2 24444555555 5999999998888776531 111133443332 3468888
Q ss_pred cchhhhcCChhhHHHHH---HHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFF---KRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l---~~~~r~LkpGG~lii 267 (277)
.+-.- +.....++ +.+...++||..++-
T Consensus 70 ~~vp~----~~~~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 70 ILVVN----AAQVRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp ECCSS----HHHHHHHHC--CCCGGGSCTTCEEEE
T ss_pred EECCC----HHHHHHHHhChhhHHhhCCCCCEEEe
Confidence 65432 12334455 566677888776653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=80.50 E-value=3 Score=34.14 Aligned_cols=104 Identities=22% Similarity=0.124 Sum_probs=59.7
Q ss_pred CCccEEEeeccccH---HHHHHHH-hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
++.+||-.|++.|. ++..|++ .+. +|++++.++.-++...+.+... ..++.++.+|+.+.. +.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 74 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAE-------GLSPRFHQLDIDDLQSIRALRD 74 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHT-------TCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhc-------CCeeEEEECCCCCHHHHHHHHH
Confidence 34578877755432 3333444 444 6999999887766665554321 134778889988642 00
Q ss_pred -----CCceeEEecchhhhcC-----C-hhhH-----------HHHHHHHHhcCCCCcEEEEE
Q 023787 228 -----TGRYDVIWVQWCIGHL-----T-DDDF-----------VSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~-----~-~~d~-----------~~~l~~~~r~LkpGG~lii~ 268 (277)
-+.+|+||.+-..... + .+++ ..+++.+...++++|.+++.
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 75 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 1368999865432211 1 1222 23455566667777887775
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.46 E-value=4.3 Score=33.35 Aligned_cols=106 Identities=18% Similarity=0.003 Sum_probs=62.7
Q ss_pred CCCCccEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023787 155 NNQHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (277)
..++++||-.|++ .|. ++..|++.+. +|++++.+....+.+++.... ...+.++.+|+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~~~~~v~~ 81 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAE--------FGSELVFPCDVADDAQIDA 81 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHH--------TTCCCEEECCTTCHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHH--------cCCcEEEECCCCCHHHHHH
Confidence 3467899999964 333 3445555565 599998875544444443322 123677888988743
Q ss_pred -C-----CCCceeEEecchhhhc-----------CChhhHHH-----------HHHHHHhcCCCCcEEEEEe
Q 023787 226 -P-----ETGRYDVIWVQWCIGH-----------LTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~-----~~~~fD~Vi~~~~l~~-----------~~~~d~~~-----------~l~~~~r~LkpGG~lii~e 269 (277)
+ .-++.|++|.+-.+.. .+.+++.. +++.+...++++|.+++.-
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 82 LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 0 0147899996654322 34444332 3455666777788877753
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.40 E-value=10 Score=33.17 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=58.3
Q ss_pred CccEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC-CCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..+|.=||+|. |. ++..+++.+. +|+.+|.++..++..++....... .+.....++.+. .|+.+. -...|+|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~~~aDvV 103 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---LEGVTDI 103 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---HTTCCEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---HhcCCEE
Confidence 46899999984 33 3444444444 599999999988877765321100 000111122221 122111 0246888
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+- +......+++++...++|+-.++..
T Consensus 104 ilaV-----p~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 104 LIVV-----PSFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp EECC-----CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred EECC-----CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7653 3346678999999999988766543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.29 E-value=11 Score=30.00 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=53.5
Q ss_pred cEEEeeccccHHHHHHHH----hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 160 VALDCGSGIGRITKNLLI----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
+|+=+|+| .++..+++ .+. .|+++|.+++.++...+.. ...++.+|..+.. ..-..+
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~------------~~~~i~gd~~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL------------KATIIHGDGSHKEILRDAEVSKN 66 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS------------SSEEEESCTTSHHHHHHHTCCTT
T ss_pred EEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc------------CCeEEEcCCCCHHHHHhcCcccC
Confidence 57777764 44444433 344 5999999999887765432 2456777776532 112467
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|++... ++.....+....+.+.|...++..
T Consensus 67 d~vi~~~~-----~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 67 DVVVILTP-----RDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp CEEEECCS-----CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred CEEEEecC-----CcHHHHHHHHHHHHHcCCCeEEEE
Confidence 88886543 223335566666666676666553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 277 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 1e-39 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 8e-20 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 5e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 8e-05 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 2e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-04 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 0.001 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.003 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.004 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 137 bits (344), Expect = 1e-39
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 18/216 (8%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
DLLEPV H L+ E F ++ T YD+I +QW
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 242 HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDIF 277
+LTD DFV FFK + L P G+ KEN + D F
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 8e-20
Identities = 72/176 (40%), Positives = 104/176 (59%), Gaps = 9/176 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL + ++ + + N+FC
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV------QAKTYLGEEGKRVRNYFCC 116
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+
Sbjct: 117 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 43.8 bits (102), Expect = 5e-06
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L ++ D S+A + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDV--------TAWDKNPASMANLERIKAAEGLDNLQTDLV 85
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ G YD I + L + KPGG+ ++
Sbjct: 86 DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCV 219
LD G G + L+ V ++ L A + + +
Sbjct: 61 LDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
+D G VI + HL D + K ++PGG V+
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
+ + L G G G + +L +EV ++E + +++ + +N + M
Sbjct: 66 AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125
Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS--FFKRAKVGLKPGGF 264
+F +DVI S F++ L G
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 185
Query: 265 FV 266
+V
Sbjct: 186 YV 187
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G+ + +E ++E R+ + H +
Sbjct: 58 LEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 114
Query: 222 QDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFV 266
T G +D I F A LKPGG
Sbjct: 115 --PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 11/117 (9%)
Query: 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213
+ N+ + LD +G G + + +V + L + +
Sbjct: 14 KGNEEV--LDVATGGGHVAN-AFAPFVKKVVAFDLTEDIL--------KVARAFIEGNGH 62
Query: 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270
V V I + SF A LK GG +L +N
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 119
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENH 205
+ L G G G I +L + +++EP + + +E +A ++
Sbjct: 36 GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN 95
Query: 206 MAPDMHKATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262
+ Q E ++D I + + ++ D + K L
Sbjct: 96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTN 153
Query: 263 GFFVL 267
++
Sbjct: 154 AKMLI 158
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 8e-04
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G+G G Y E ++ ++ + + F
Sbjct: 21 LDIGAGAGHTAL-AFSPYVQECIGVDATKEMVEV------ASSFAQEKGVENVRFQQGTA 73
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275
+ +D+I ++ H D + LK G F+L ++ A D
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPED 125
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.001
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 102 KTQWYREGISYWEGVEAS--VDGVL---------------GGFGNVNEVDIKGSEAFLQM 144
+ W+RE S W G S V+ +L +GNV +D +Q
Sbjct: 2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLD-----GVIQC 56
Query: 145 LLSDRFPNARNNQHLV---------ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLD 194
D F +L L G G G + + ++ V E +
Sbjct: 57 TERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQ 116
Query: 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDFVSFF 252
+++ L P + K T + +DVI +G S++
Sbjct: 117 VSKKFL-PGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYY 175
Query: 253 KRAKVGLKPGGFFV 266
+ K LK G
Sbjct: 176 QLMKTALKEDGVLC 189
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.7 bits (83), Expect = 0.002
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263
A F + + E +D + I H + FK + LKP G
Sbjct: 76 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 135
Query: 264 FFVL 267
F++
Sbjct: 136 KFIM 139
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.4 bits (83), Expect = 0.003
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
N D+ ++ ++ L++ + + + +D G G G + L+
Sbjct: 4 NTRDLYYNDDYVSFLVNTVWKITKP---VHIVDYGCGYGYLGLVLMPLLPEGSKY----- 55
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250
+D+ LA + + + F +YD+ + H+T + +
Sbjct: 56 TGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--T 112
Query: 251 FFKRAKVGLKPGGFFVLKE 269
++ +K GG + E
Sbjct: 113 MLQKMIHSVKKGGKIICFE 131
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (84), Expect = 0.003
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 5/120 (4%)
Query: 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218
+D GSG+G + E + D N
Sbjct: 219 TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278
Query: 219 VPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
L+ + R + V L D+D ++ K G + +++
Sbjct: 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL 338
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.004
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 35/159 (22%)
Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
+ L+ F +D GSG +F ++ + + + L
Sbjct: 39 WKLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97
Query: 201 APENHMAPDMHKATNFFCV-------------------------------PLQDFTPETG 229
E A + + C+ PL +P
Sbjct: 98 QEE-PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL 156
Query: 230 RYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFV 266
D + +C+ ++ D F L+PGG +
Sbjct: 157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 277 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.96 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.86 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.84 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.82 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.81 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.81 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.77 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.72 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.71 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.7 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.69 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.68 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.63 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.62 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.59 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.58 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.58 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.58 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.57 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.56 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.55 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.54 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.48 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.45 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.43 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.41 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.4 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.39 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.36 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.36 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.36 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.35 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.3 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.29 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.26 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.2 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.2 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.19 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.17 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.13 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.13 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.11 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.08 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.05 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.96 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.84 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.77 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.76 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.76 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.75 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.7 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.7 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.69 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.68 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.66 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.62 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.45 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.33 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.28 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.23 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.23 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.13 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.1 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.97 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.97 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.95 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.83 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.78 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.2 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.17 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.13 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.04 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.03 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.03 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.95 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.94 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.42 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.42 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.31 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.24 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.15 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.04 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.83 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.74 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.64 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.63 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.52 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.37 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.33 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.21 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.21 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.19 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.99 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.96 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.67 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.63 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.58 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.32 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.01 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.66 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 93.28 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.83 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.61 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.48 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 91.66 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.32 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.4 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.93 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.29 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 88.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.17 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.59 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 85.98 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 85.61 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.05 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.97 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.97 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.1 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 82.6 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.94 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 81.82 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.09 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=1e-34 Score=247.75 Aligned_cols=190 Identities=41% Similarity=0.779 Sum_probs=167.4
Q ss_pred cccccccCCCCCCCccccHHHHHHHHhCCCCcchhhhhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHH
Q 023787 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (277)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (277)
+......|.++.|++|.+.+++|++.+..... .....||.++.+||+.++.++++++++|+.++..++..++.++..+
T Consensus 12 ~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l 89 (254)
T d1xtpa_ 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhC
Confidence 55567889999999999999999999876443 3445699999999999999999999999999888888887777653
Q ss_pred HhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC
Q 023787 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (277)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (277)
. ..+..+|||+|||+|+++..++.+++..|++||+|+.|++.|++++.. ..+++|++.++.+++
T Consensus 90 ~--------~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred C--------CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEccccccc
Confidence 2 456789999999999999999988888899999999999999999876 456899999999999
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+++++||+|++.++++|++++++..+|++++++|||||+|+|.|++..
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 888999999999999999988889999999999999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.5e-30 Score=212.46 Aligned_cols=164 Identities=45% Similarity=0.907 Sum_probs=141.1
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC
Q 023787 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (277)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (277)
...||+++.+||++++.+.++++++|+.++..+......++...+..... ..++.+|||||||+|.++..++.+++.
T Consensus 8 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~ 84 (222)
T d2ex4a1 8 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLFR 84 (222)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence 45689999999999999999999999988877877777777776654433 456789999999999999988877777
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCC
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (277)
+|+|||+|+.|++.|++++...+ ..+++|+++|++++++++++||+|++..++||++++++..++++++++|||
T Consensus 85 ~v~~vD~s~~~l~~ak~~~~~~~------~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~ 158 (222)
T d2ex4a1 85 EVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 158 (222)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEeecCHHHhhcccccccccc------ccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCC
Confidence 89999999999999999987643 256799999999999888999999999999999988888999999999999
Q ss_pred CcEEEEEecCCCC
Q 023787 262 GGFFVLKENIARS 274 (277)
Q Consensus 262 GG~lii~e~~~~~ 274 (277)
||.+++.|++..+
T Consensus 159 ~G~~~i~~~~~~~ 171 (222)
T d2ex4a1 159 NGIIVIKDNMAQE 171 (222)
T ss_dssp EEEEEEEEEEBSS
T ss_pred cceEEEEEccccc
Confidence 9999999987654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.4e-23 Score=175.94 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=99.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .++.++++|++++++++++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc------cccccccccccccccccccccee
Confidence 67899999999999999999987765 699999999999999999876443 56999999999999999999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|..+++|++ +...+++++.++|||||++++.++..+
T Consensus 87 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 87 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred eeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 9999999998 677999999999999999999887543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.89 E-value=1.8e-23 Score=180.05 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=101.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+++.+|||||||+|..+..++++...+|+|+|+|+.|++.|+++....++ ..++++.++|+.++++++++||+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----cccccccccccccccccccccchh
Confidence 568899999999999999999887555799999999999999999876655 467999999999999998999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
++..+++|++ +...+++++.++|||||+|++.+.+..+
T Consensus 140 ~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~ 177 (282)
T d2o57a1 140 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKED 177 (282)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred hccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence 9999999998 6679999999999999999999876543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=2.2e-23 Score=172.75 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=101.5
Q ss_pred chHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
..-..+..++.+.+ ++..+|||||||+|..+..+++.+. +|+|+|+|+.|++.|+++.... ...+.+
T Consensus 22 ~~~~~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~-------~~~~~~ 88 (226)
T d1ve3a1 22 SRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEF 88 (226)
T ss_dssp HHHHHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEE
T ss_pred HHHHHHHHHHHHhc-----CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccc-------cccccc
Confidence 33344455554433 3668999999999999999987755 6999999999999999987653 245788
Q ss_pred EEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 217 ~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.|+.++++++++||+|+|..+++|+++.++..+|+++.++|||||++++...
T Consensus 89 ~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 89 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 899999999888999999999999999988899999999999999999998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=2.7e-23 Score=173.31 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=97.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .+++|.++|++++++++++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc------ccccccccccccccccccccccc
Confidence 56789999999999999999887765 699999999999999998765443 67899999999999888999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|..++||++ +...+++++.++|||||++++.++..+
T Consensus 86 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 86 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999999999 677999999999999999999886543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=1.8e-22 Score=170.30 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=98.3
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (277)
.++..++.... ..++.+|||||||+|..+..+++.+. +|+|||+|+.|++.|++++...+ .++++.++
T Consensus 28 ~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~-------~~i~~~~~ 95 (251)
T d1wzna1 28 DFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN-------LKIEFLQG 95 (251)
T ss_dssp HHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEES
T ss_pred HHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccc-------ccchheeh
Confidence 34555554332 34667999999999999999998776 59999999999999999986542 36899999
Q ss_pred CCCCCCCCCCceeEEecc-hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 220 PLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 220 d~~~~~~~~~~fD~Vi~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+++++++ ++||+|+|. .+++|++.++...+|++++++|||||++++.-
T Consensus 96 d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 96 DVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999887 589999986 58889987889999999999999999999864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.7e-22 Score=165.98 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....++ ..+++|.++|+.++. .+++||+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~~d~~~~~-~~~~fD~v 104 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYV-ANEKCDVA 104 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCC-CSSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----cccchhhhhHHhhcc-ccCceeEE
Confidence 668899999999999999998877656899999999999999999877665 467999999999974 56899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|..+++|++ +...++++++++|||||++++.+..
T Consensus 105 ~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 105 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEecc
Confidence 9999999999 6679999999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.2e-21 Score=164.32 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=91.9
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
...+..++...+ .++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++... .++.
T Consensus 29 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~------------~~~~ 90 (246)
T d2avna1 29 HRLIGSFLEEYL-----KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVE 90 (246)
T ss_dssp HHHHHHHHHHHC-----CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccccc------------cccc
Confidence 344445454443 3667999999999999999987665 699999999999999997533 3577
Q ss_pred cCCCCCCCCCCceeEEecc-hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 219 ~d~~~~~~~~~~fD~Vi~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++++++++++++||+|+|. .++||++ +...+|+++.++|||||+++++.
T Consensus 91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 91 AKAEDLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CCTTSCCSCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEE
Confidence 8999999988999999985 6899998 56689999999999999999975
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=6.7e-21 Score=163.54 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....++ ..++.+...|..+++ ++||.|
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~~~---~~fD~i 121 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI 121 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhhhc---cchhhh
Confidence 778999999999999999988877556899999999999999999988766 456777777766543 789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+++|++..++..+|++++++|||||++++.+.+.
T Consensus 122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 99999999998888999999999999999999986543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=4.7e-21 Score=156.34 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=95.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|..+..++++++ +|+|+|+|+.|++.++++....++ .++.+...|+.++.++ ++||+|++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTLTFD-GEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc------cchhhhheeccccccc-ccccEEEE
Confidence 446999999999999999998877 599999999999999988776543 4688899999988765 79999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..++||++++++..+++++.++|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999888999999999999999999997654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=1.2e-20 Score=156.97 Aligned_cols=111 Identities=14% Similarity=0.258 Sum_probs=94.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+++.+|||+|||+|..+..+++.. + .+|+|+|+|+.|++.|+++....+. ..++.+...|+.++++ ..+|
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~~~~~--~~~d 110 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEI--KNAS 110 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTTTCCC--CSEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhhcccc--ccce
Confidence 367899999999999999888652 2 2799999999999999998765433 4567778888877654 5799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|+++.++||++.++...++++++++|||||.+++.|...+
T Consensus 111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 99999999999988999999999999999999999987643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=3.7e-21 Score=162.06 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=95.1
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
..++...+... ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+ .++++++
T Consensus 24 ~~~~~~~~~~~-----~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~-------~~v~~~~ 90 (246)
T d1y8ca_ 24 SDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG-------LKPRLAC 90 (246)
T ss_dssp HHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT-------CCCEEEC
T ss_pred HHHHHHHHHHh-----CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC-------ccceeec
Confidence 44555555432 23567999999999999999988776 59999999999999999876542 3689999
Q ss_pred cCCCCCCCCCCceeEEecc-hhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 219 VPLQDFTPETGRYDVIWVQ-WCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 219 ~d~~~~~~~~~~fD~Vi~~-~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.+++++ ++||+|+|. .+++|+. .+++..+|+++++.|||||.|++.
T Consensus 91 ~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 91 QDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999988765 699999976 5788874 667889999999999999999974
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.82 E-value=2.8e-20 Score=157.29 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=93.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+++.++.+|+|+|+|+.|++.|+++....+. ..++.|.++|+...++ ..++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcchhhhcccccccceEE
Confidence 46789999999999999989888887899999999999999998765433 4579999999977654 35689999
Q ss_pred ecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|.+++||+ +.+++..+++++.++|||||+|++.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 999999997 3456889999999999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=8.2e-20 Score=156.82 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=106.1
Q ss_pred cccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
.+........+.+.+.+. ..++.+|||||||+|..+..+++....+|+|+++|+.+++.|+++....++ ..+
T Consensus 42 tL~eAQ~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~ 113 (285)
T d1kpga_ 42 TLQEAQIAKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRS 113 (285)
T ss_dssp CHHHHHHHHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSC
T ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhh
Confidence 344444444445555554 789999999999999999998888766899999999999999999877666 567
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++...|..+++ ++||.|++..+++|+...+...+++++.++|||||++++...+
T Consensus 114 v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 114 KRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 889999987764 6899999999999998778889999999999999999987654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=5.1e-20 Score=158.27 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=92.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|.++..++..... +|+|+|+|+.|++.|++++... ..+++|.+.|+.+++++ ++||
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-------~~~~~f~~~d~~~~~~~-~~fD 96 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 96 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-------ccccccccccccccccc-CCce
Confidence 457789999999999999988765442 7999999999999999998764 24689999999998876 5899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..++||++ +...++++++++|||||.+++.|.
T Consensus 97 ~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 97 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999999999 666999999999999999999874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=8.1e-20 Score=157.32 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=102.4
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcce
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 214 (277)
+........+.+.+.+. ..++.+|||||||+|..+..++++...+|+|+++|+.+++.++++....++ ..++
T Consensus 42 L~~Aq~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----~~~v 113 (291)
T d1kpia_ 42 LEEAQYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRK 113 (291)
T ss_dssp HHHHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----SSCE
T ss_pred HHHHHHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----chhh
Confidence 44444444444544544 789999999999999999999887667899999999999999999887666 4567
Q ss_pred eEEEcCCCCCCCCCCceeEEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+...|.. +.+++||.|+|..+++|+++ +.+..+++++.++|||||++++...+
T Consensus 114 ~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 114 EVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred hhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 77777754 34589999999999999975 35789999999999999999998654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=3.4e-20 Score=149.97 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=95.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCC------CCCCcceeEEEcCCCCCCC-C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTP-E 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~-~ 227 (277)
..++.+|||+|||+|..+..|+++++. |+|+|+|+.|++.|+++.+..+... .......++.++|+.+++. .
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 568899999999999999999999885 9999999999999999986532210 0012346788888888763 3
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+||+|++..+++|+++++...++++++++|||||.+++....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 46899999999999999888999999999999999998886543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.4e-20 Score=154.43 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=84.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+..+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.++++|++++++++++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------------cccccccccccccccccccccccc
Confidence 45689999999999887653 589999999999999874 378899999999988899999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|++ ++..++++++++|+|||.+++.+..
T Consensus 98 ~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 98 VTTICFVD--DPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp ESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccc--ccccchhhhhhcCCCCceEEEEecC
Confidence 99999998 6779999999999999999998754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=6.6e-20 Score=152.85 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=96.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC-----------CCCCCcceeEEEcCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-----------APDMHKATNFFCVPLQD 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~ 223 (277)
..++.+|||+|||+|..+..|++.++ +|+|||+|+.+++.|+++....+.. ......++++.++|+.+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 55778999999999999999998888 4999999999999999987542110 00113478899999888
Q ss_pred CC-CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 224 FT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 224 ~~-~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++ ...+.||+|+...++||+++++...+++++.++|||||++++...
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 75 446799999999999999999999999999999999999887643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=3.7e-19 Score=147.84 Aligned_cols=99 Identities=23% Similarity=0.291 Sum_probs=87.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... ++.+..+++.+++++ ++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~----------~~~~~~~~~~~~~~~-~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----------GITYIHSRFEDAQLP-RRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc----------ccccccccccccccc-cccccccc
Confidence 467899999999999998886665 599999999999999988643 588999999888765 79999999
Q ss_pred chhhhcCChhhHHHHHHHHH-hcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~-r~LkpGG~lii~e 269 (277)
..+++|++ +...++.++. ++|||||++++.-
T Consensus 88 ~~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 THVLEHID--DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cceeEecC--CHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998 6669999998 7999999999974
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.77 E-value=9.6e-19 Score=147.93 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=95.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.....+|||||||+|.++..++++++. +++++|+ +.+++.+++++...++ ..+++++.+|+.+.. +.+||+
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~~~--~~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEPL--PRKADA 149 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC--SSCEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccccchhhc--ccchhh
Confidence 446679999999999999999988876 8999998 6799999999877655 467999999986532 357999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|++..++||+++++...+|++++++|||||+++|.|...
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 999999999998888899999999999999999998754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.2e-19 Score=146.20 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=85.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||||||+|..+..+++..+.+|++||+|+.|++.|+++.... ..++.++..+.... .+++++||.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-------ccccccccccccccccccccccccc
Confidence 467899999999999999988766668999999999999999998764 24566666665433 355678998
Q ss_pred Ee-----cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi-----~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+ +...++|+. +...++++++|+|||||+|++.+
T Consensus 125 i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred eeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 87 567777877 67799999999999999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.4e-18 Score=146.69 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||||||+|.++..+++.++. +++|+|+|+.|++.|+++. .++.|.++|+.++++++++||+|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~v 151 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDAI 151 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEEE
Confidence 46789999999999999999988765 7999999999999999874 45889999999999999999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.++++| ++++.|+|||||+++++...
T Consensus 152 ~~~~~~~~---------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 152 IRIYAPCK---------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp EEESCCCC---------HHHHHHHEEEEEEEEEEEEC
T ss_pred eecCCHHH---------HHHHHHHhCCCcEEEEEeeC
Confidence 99888766 46789999999999998653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.72 E-value=1.5e-17 Score=140.67 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.....+|||||||+|..+..++++++. +++++|+ +.+++.+++++...++ ..++.+...|+.+. .+ .+||+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~~-~p-~~~D~ 150 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFKP-LP-VTADV 150 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSC-CS-CCEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC-----cceeeeeeeecccc-cc-ccchh
Confidence 345679999999999999999999877 8999997 7899999998876655 46788898888753 33 46999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|++.+++|++++++...+|++++++|||||+++|.|.+
T Consensus 151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 99999999999888899999999999999999999975
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=4.8e-18 Score=137.01 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=90.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
+.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|+++++..++ ..+++++++|+.+...+...||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchhhcccccCCcCEE
Confidence 678999999999999999988765 45799999999999999999988766 468999999988776666899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++....++ ...+++.+.+.|||||++++...
T Consensus 105 ~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 99887654 44789999999999999988653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=1.4e-17 Score=135.05 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=89.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++..+++. ..++++...|+.+ ..++++||+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~-~~~~~~fD~I 123 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE-NVKDRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT-TCTTSCEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh-hhccCCceEE
Confidence 5578899999999999999887654 47999999999999999998765542 2458899999877 4456899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++.++|+.. +....+++++.+.|||||.+++..
T Consensus 124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 9998887654 345789999999999999988753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.2e-18 Score=145.35 Aligned_cols=119 Identities=15% Similarity=0.046 Sum_probs=87.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCC-----------------------C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-----------------------H 211 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~-----------------------~ 211 (277)
..++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|++++...+...... .
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 34678999999999998877776666689999999999999999876543211000 0
Q ss_pred cce-eEEEc----CCCCCCCCCCceeEEecchhhhcCCh--hhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 212 KAT-NFFCV----PLQDFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 212 ~~~-~~~~~----d~~~~~~~~~~fD~Vi~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
..+ ..... +....+++.++||+|++.+++||++. +++..+++++.++|||||++++.+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 000 11111 11222456689999999999999863 5688999999999999999999876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.8e-17 Score=139.11 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=84.4
Q ss_pred CCCccEEEeeccccHHHHHHHHh----CCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-----
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR----YFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----- 223 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~----~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~----- 223 (277)
.+..+|||||||+|.++..++.. +.. .++|||+|+.|++.+++++...... .....++...++++
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---ENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TTEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---ccccccchhhhhhhhcchh
Confidence 44568999999999998887654 222 6899999999999999998653210 01233444444432
Q ss_pred -CCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 224 -FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 224 -~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+.++++||+|++..++||++ ++..++++++++|+|||.+++....
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEec
Confidence 234568999999999999998 6779999999999999999998653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.5e-17 Score=143.35 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=81.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (277)
++.+|||+|||+|..+..|++.+. +|+|+|+|+.||+.|+++....+.... .....+...++..+. +..++||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccc--cceeeeeeccccccccccCCCCCceE
Confidence 557999999999999999998876 599999999999999988754322100 112334444443211 22368999
Q ss_pred Eecch-hhhcCCh-----hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~-~l~~~~~-----~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|.+ +++|+++ ++...+|++++++|||||+|++.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 99764 8999864 35788999999999999999985
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.4e-16 Score=132.43 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=91.7
Q ss_pred CCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CC
Q 023787 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PE 227 (277)
Q Consensus 150 l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 227 (277)
+......++.+|||+|||+|..+..+++.++. .|+|+|+|+.|++.++++... ..++..+..|..... +.
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~ 138 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYA 138 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGT
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEeeccCcccc
Confidence 33345788999999999999999999987654 899999999999999998776 356777777776653 44
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..+|++++...+++.. +...++.++.+.|||||.+++++..
T Consensus 139 ~~~~~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 139 NIVEKVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp TTCCCEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccceeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeec
Confidence 56788888777788776 6678999999999999999998654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.2e-17 Score=139.11 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=83.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++...+++ +..+.++|+.+. .+.++||+|+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-------~~~~~~~d~~~~-~~~~~fD~V~ 189 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCHHHH-GGGCCEEEEE
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-------ceeEEecccccc-ccccccchhh
Confidence 4778999999999999998776665 699999999999999999877643 456788877653 3457999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++...+ .+..++.++.++|||||++++++..
T Consensus 190 ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 190 ANLYAE-----LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccccc-----cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 986654 4557899999999999999998653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3e-17 Score=139.35 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=86.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCC--C----------------------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD--M---------------------- 210 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~--~---------------------- 210 (277)
...+.+|||||||+|..+...+.+.+.+|+++|+|+.|++.+++++...+..-.- .
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 4467899999999998876566667778999999999999999987653211000 0
Q ss_pred CcceeEEEcCCCCC------CCCCCceeEEecchhhhcCC--hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 211 HKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 211 ~~~~~~~~~d~~~~------~~~~~~fD~Vi~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
........+|+..- ..++++||+|++.+++||++ .+++..++++++++|||||+|++.+...
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence 00112233455332 23456899999999999986 3468899999999999999999986543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=2.7e-16 Score=129.34 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++.... .|+++|+++.+++.|++++...+. .++.+.++|..+..+.+++||
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchh
Confidence 678999999999999999988876432 799999999999999999876554 567888899887776678999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..+++++++ ++.+.|||||++++.
T Consensus 147 ~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 147 VIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp EEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred hhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 9999999999872 356779999999885
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=2.6e-16 Score=128.92 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=83.0
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC---
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--- 229 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 229 (277)
...++.+|||+|||+|..+..+++..+. +|+|+|+|+.|++.|+++... ..++.++..|.........
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~~ 124 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIVE 124 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCccccccccc
Confidence 3778999999999999999999876543 799999999999999998766 3578899998887653333
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|++ .+.|.. +...+++++.++|||||.+++.+
T Consensus 125 ~vd~v~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 125 KVDLIYQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CEEEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEe--cccChh--hHHHHHHHHHHHhccCCeEEEEE
Confidence 4444443 344544 66689999999999999999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=5e-16 Score=126.64 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=89.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
....|||||||+|..+..+++..+. .++|+|+++.++..|.++....++ .|+.++++|+..+. ++++++|.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~d~ 102 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR 102 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhhhc
Confidence 3457999999999999999998876 899999999999999998877654 57999999988764 67889999
Q ss_pred EecchhhhcCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++.+...+..... ...+++.++|+|||||.|+|.
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred cccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 99988876654322 147999999999999999886
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.3e-15 Score=133.24 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=89.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..+++.++.+|+++|.|+ +++.|+++...++. ..++.++++++.++++++.+||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehhhccCcccceeEEEE
Confidence 5789999999999999988888888999999996 77888888776655 56799999999999988889999999
Q ss_pred chhhhcCCh-hhHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii 267 (277)
....+++.. ..+..++.++.++|||||+++-
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 887776653 3577899999999999999863
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.7e-15 Score=132.42 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=87.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCC---CCCCCcceeEEEcCCCCCCCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~ 230 (277)
..++.+|||+|||+|..+..++..... +++|||+|+.|++.|+++....... ......+++|+++|+.+.++.+..
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 568899999999999999988876544 7999999999999998765431000 000035689999999987655433
Q ss_pred e--eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 231 Y--DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 231 f--D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+ |+|+++. +.|.+ ++...+.++.+.|||||++++.+...+.
T Consensus 229 ~~advi~~~~-~~f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 229 ANTSVIFVNN-FAFGP--EVDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp HHCSEEEECC-TTTCH--HHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred CcceEEEEcc-eecch--HHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 4 6676654 44544 7779999999999999999998765543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=1.9e-15 Score=127.52 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=88.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..|++. ++. +|+++|+++++++.|++++..... ....++.+.+.|+.+.++++++||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEecccccccccCCCcc
Confidence 678999999999999999999877 343 899999999999999998754210 013578999999998888889999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.|++ +++ +...++.++.++|||||++++...+
T Consensus 171 aV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 171 RAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp EEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred eEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 9985 567 4458999999999999999886543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=2.9e-15 Score=125.55 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
...++.+|||+|||+|.++..+++. ++. +|+++|+++.+++.|++++...+. ..++++...|+.+.. ++++|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di~~~~-~~~~f 155 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFI-SDQMY 155 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCC-CSCCE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeeeeccc-cccee
Confidence 3678999999999999999998876 333 899999999999999999876433 467999999998864 45799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++. ++ +...++.++.++|||||++++...
T Consensus 156 D~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 156 DAVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeec-----CC--chHHHHHHHHHhcCCCceEEEEeC
Confidence 999863 45 344799999999999999998643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.3e-15 Score=130.93 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||||||+|.++..+++.++.+|+++|.|+.+ ..+++....+++ ..++.++++++.+++.+.++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~-----~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCC-----ccccceEeccHHHcccccceeEEEee
Confidence 567899999999999998888777789999999754 666666655554 46799999999999988889999999
Q ss_pred chhhhcCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii 267 (277)
....+++..+ .+..++..+.++|||||.++.
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 8877766533 578899999999999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=8.2e-15 Score=119.33 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=86.7
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~V 234 (277)
...|||||||+|..+..+++..+. .++|+|+++.++..|.++....++ .|+.+..+|+.++. ++++++|.|
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCceehh
Confidence 457999999999999999998876 899999999999999888876554 67999999988864 667899999
Q ss_pred ecchhhhcCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~ 268 (277)
++.+.-.+..... ...+++.+.++|||||.|+|.
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 9877644332111 157999999999999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.9e-15 Score=127.51 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=86.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+++.++.+|+++|.|+.|.. +++.....+. ..++.++++++.++..++.+||+|+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~-----~~~i~~~~~~~~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVII 107 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCC-----CccceEEEeeHHHhcCccccceEEE
Confidence 357899999999999999888888889999999998865 4444433333 4679999999999988888999999
Q ss_pred cchhhhcCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii 267 (277)
+....+++..+ .+..++....+.|||||+++.
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 98877776544 466788888999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.9e-15 Score=123.90 Aligned_cols=105 Identities=20% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++. +.. +|+++|+++++++.|++++...++.+.. ..++.+..+|.....++.++||
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-ccceEEEEeecccccchhhhhh
Confidence 467899999999999999877765 222 7999999999999999988654321111 2467888899887777778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..+++++++ .+.+.|||||++++.
T Consensus 153 ~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred hhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 9999999998872 366889999999985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.54 E-value=1.4e-14 Score=119.49 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.. ..+|+++|+++.+++.|++++.. ..++.++.+|......+.++||.|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHH
Confidence 678899999999999999977755 45799999999999999999876 467999999987655556789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..++.+++ + .+.+.|||||++++.
T Consensus 139 iv~~a~~~ip--~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 139 VVWATAPTLL--C------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EESSBBSSCC--H------HHHHTEEEEEEEEEE
T ss_pred Hhhcchhhhh--H------HHHHhcCCCCEEEEE
Confidence 9999988887 2 245689999999884
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=5e-14 Score=116.40 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=85.1
Q ss_pred cCCCcCCCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--
Q 023787 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (277)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (277)
.+......++.+|||+|||+|..+..+++.. .. +|+++|+|+.|++.++++... ..++..+..|....
T Consensus 65 ~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~~~~ 136 (227)
T d1g8aa_ 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEE 136 (227)
T ss_dssp TCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGG
T ss_pred cccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCCccc
Confidence 3334457899999999999999999998763 33 899999999999999999876 34566677766543
Q ss_pred -CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 225 -~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
......+|+|++. +.+.. +...+++++.+.|||||+++++.
T Consensus 137 ~~~~~~~vD~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 137 YRALVPKVDVIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTTTCCCEEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceEEEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEE
Confidence 3344688988764 33434 56689999999999999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=3.6e-14 Score=120.04 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=83.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++... . +|+++|+|+.+++.|++++...++ ..++.+...|+... ++...||
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~~~d~~~~-~~~~~~D 174 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD 174 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEEecccccc-cccccee
Confidence 67899999999999999999987643 2 899999999999999999987655 45677777776442 3446799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|+ ++++ +...++.++.++|||||++++...
T Consensus 175 ~V~-----~d~p--~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 175 ALF-----LDVP--DPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp EEE-----ECCS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred eeE-----ecCC--CHHHHHHHHHhhcCCCCEEEEEeC
Confidence 886 4566 455899999999999999998644
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=2.9e-14 Score=126.90 Aligned_cols=127 Identities=14% Similarity=0.049 Sum_probs=85.0
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCC----CCCCCCcc
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENH----MAPDMHKA 213 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~----~~~~~~~~ 213 (277)
..++..++... ...++.++||||||+|..+..++.... .+++|||+|+.|++.|+++....+. .... ...
T Consensus 202 ~~~i~~Il~~l----~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~ 276 (406)
T d1u2za_ 202 PNFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNN 276 (406)
T ss_dssp HHHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCC
T ss_pred HHHHHHHHHHh----CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-ccc
Confidence 34555555432 256889999999999999999887754 4799999999999999987653110 0000 011
Q ss_pred eeE-EEcCCCCCCCC---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 214 TNF-FCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 214 ~~~-~~~d~~~~~~~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
..+ ..+++.+.+.. -..+|+|+++. ++|.+ ++...|.++.+.|||||+|+..+...+
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~--~l~~~L~ei~r~LKPGGrIVs~~~~~~ 337 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDE--DLNKKVEKILQTAKVGCKIISLKSLRS 337 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred ceeeeeechhhccccccccccceEEEEec-ccCch--HHHHHHHHHHHhcCCCcEEEEecccCC
Confidence 222 22333332110 12567887654 34544 788999999999999999999886554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.5e-13 Score=114.96 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..+.+|||+|||+|..+..++...+. +|+++|+|+.+++.|++++...++ .++++++.|+.+. .++.+||+|
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d~~~~-~~~~~fDlI 179 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSA-LAGQQFAMI 179 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGG-GTTCCEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------ccceeeecccccc-cCCCceeEE
Confidence 35678999999999999999887765 899999999999999999876554 4689999998763 334699999
Q ss_pred ecchhhh-------------cCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 235 WVQWCIG-------------HLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 235 i~~~~l~-------------~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (277)
+|+.... |-|. ..+..++..+.+.|+|||.+++
T Consensus 180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 9985421 1110 1256789999999999999998
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.41 E-value=2.5e-13 Score=111.08 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=84.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+++|.++.+++.|++++...+. .++.++++|..+...+.++||.|
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~I 149 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVI 149 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeE
Confidence 678899999999999999977654334699999999999999999987654 68999999988766667899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..++.++| + . +...|+|||++++.
T Consensus 150 iv~~a~~~ip--~--~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 150 IVTAGAPKIP--E--P----LIEQLKIGGKLIIP 175 (215)
T ss_dssp EECSBBSSCC--H--H----HHHTEEEEEEEEEE
T ss_pred EeecccccCC--H--H----HHHhcCCCCEEEEE
Confidence 9999999888 3 2 45679999999885
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.6e-13 Score=116.03 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=81.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCC-----CCCCCcceeEEEcCCCCCC--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHM-----APDMHKATNFFCVPLQDFT-- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~-- 225 (277)
..++.+|||+|||+|.++..|++.. +. +|+++|+++.+++.|++++...+.. ......++++...|+.+..
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 6789999999999999999998763 33 8999999999999999987632100 0111357899999998764
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.++.+||.|+. .++ +...++.++.++|||||+|++--
T Consensus 176 ~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 176 IKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp -----EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEe
Confidence 34578999985 345 33378999999999999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=2.3e-13 Score=118.44 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=89.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++ ..+++++++|+.+.. ....+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----CccceeeechhhhhhHHHHhccCCC
Confidence 36789999999999999999888777899999999999999999988776 467889999876532 234689
Q ss_pred eEEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 232 D~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+|++......... .+...++..+.++|+|||+|+++.+..
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99998654222111 135668899999999999999986543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=3.8e-13 Score=113.33 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=86.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++ ..+++++++|..++..+ +.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~~~~~-~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHHhccC-CCCCEEE
Confidence 36889999999999999999988766899999999999999999988776 45689999999888654 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+...- .-..++..+.+.|+|||++.+.+++
T Consensus 180 ~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 180 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCCC------chHHHHHHHHhhcCCCCEEEEEecc
Confidence 76431 1225778888999999999776554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=6.8e-13 Score=110.74 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=84.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
....+|||||||+|..+..++++++. +++.+|+ |..++. ... ..++++..+|+.+. .+ ..|+|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~--------~~ri~~~~gd~~~~-~p--~~D~~ 143 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----APP--------LSGIEHVGGDMFAS-VP--QGDAM 143 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCC--------CTTEEEEECCTTTC-CC--CEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----cCC--------CCCeEEecCCcccc-cc--cceEE
Confidence 45579999999999999999999887 8999998 444431 111 36799999998653 22 46999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
++.+++|+.++++...+|+++++.|+|||+++|.|.+.+
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 999999999999999999999999999999999997643
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=2.6e-12 Score=103.40 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=80.8
Q ss_pred CCCccEEEeeccccHHHHH----HHHhCC----C-cEEEEeCCHHHHHHHHHHh------------------CCCCCC--
Q 023787 156 NQHLVALDCGSGIGRITKN----LLIRYF----N-EVDLLEPVSHFLDAARESL------------------APENHM-- 206 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~----l~~~~~----~-~v~gvD~S~~~l~~a~~~~------------------~~~~~~-- 206 (277)
.++.+||++|||+|.-... +.+... . +|+|+|+|+.+++.|++-. ...+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4568999999999985433 332211 1 6999999999999998532 110000
Q ss_pred -----CCCCCcceeEEEcCCCCCC-CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecC
Q 023787 207 -----APDMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (277)
Q Consensus 207 -----~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (277)
.......+.+...++.... .+.++||+|+|.++|.|++++....+++++++.|+|||+|++. |.+
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~l 175 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF 175 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCccc
Confidence 0000122445555554432 3357899999999999999888899999999999999999985 554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.35 E-value=2.2e-13 Score=105.69 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=83.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Vi 235 (277)
.+.+|||+|||+|.++...+.+++.+|+++|.++.+++.+++++...+. ..++++++.|+..+ ....++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccccccccccccceeE
Confidence 5689999999999999999989988999999999999999999987665 46789999988764 23457899999
Q ss_pred cchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (277)
+..... .......+..+. +.|+|||.+++.
T Consensus 89 ~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 89 LDPPYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp ECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 875432 123445555554 579999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.30 E-value=9.8e-13 Score=108.23 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=80.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC----C---CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY----F---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~----~---~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (277)
..++.+|||||||+|..+..++... . .+|+++|+++++++.|++++...++.... ..++.+..+|..+...+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-SGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-HTSEEEEESCGGGCCGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-ccEEEEEeccccccccc
Confidence 4578999999999999998766431 1 27999999999999999876432110000 24688999998877666
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++||.|++..++.+++ + .+.+.|||||++++.
T Consensus 157 ~~~fD~Iiv~~a~~~~p--~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTP--T------ELINQLASGGRLIVP 189 (223)
T ss_dssp GCSEEEEEECSCBSSCC--H------HHHHTEEEEEEEEEE
T ss_pred ccceeeEEEEeechhch--H------HHHHhcCCCcEEEEE
Confidence 68999999999998887 2 256799999999875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=8.5e-13 Score=114.41 Aligned_cols=108 Identities=20% Similarity=0.135 Sum_probs=84.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD 232 (277)
++.+|||++||+|.++..++. +..+|+++|+|+.+++.|++++..+++ .++++++.|..++ ....++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhhcCCC
Confidence 578999999999999998774 555799999999999999999988765 4688899987653 23346899
Q ss_pred EEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++......... .+...++..+.++|||||+|+++.+.
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9997653221111 13557889999999999999997654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=4.6e-12 Score=105.59 Aligned_cols=101 Identities=12% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
...+|||||||+|..+..++++++. ++++.|. |..++.+ .. ..+++++.+|+.+.. ..+|+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~--------~~rv~~~~gD~f~~~---p~aD~~~ 143 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SG--------SNNLTYVGGDMFTSI---PNADAVL 143 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CC--------BTTEEEEECCTTTCC---CCCSEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cc--------cCceEEEecCcccCC---CCCcEEE
Confidence 3468999999999999999999887 8999998 4444322 11 467999999987632 2589999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCC---cEEEEEecCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKENIAR 273 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpG---G~lii~e~~~~ 273 (277)
+.++||+.++++...+|+++++.|+|| |+++|.|.+.+
T Consensus 144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~ 184 (244)
T d1fp2a2 144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 184 (244)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence 999999999999999999999999999 88999987643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=6e-12 Score=101.21 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=61.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
.+.+|||+|||+|.++..++..++.+|+++|+++.+++.|+++.. ++++.++|+.+++ ++||+|++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l~---~~fD~Vi~ 113 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWIM 113 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------cccEEEEehhhcC---CcceEEEe
Confidence 578999999999999988887787789999999999999999864 3788999998764 78999999
Q ss_pred chhh
Q 023787 237 QWCI 240 (277)
Q Consensus 237 ~~~l 240 (277)
+-.+
T Consensus 114 NPPf 117 (197)
T d1ne2a_ 114 NPPF 117 (197)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8664
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.20 E-value=1.1e-11 Score=106.20 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=90.8
Q ss_pred cccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+....+.++...+.. ..++.+|||+.||+|.++..++..+. +|++||.|+.+++.|++++..+++. ..+
T Consensus 115 dqr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~----~~~ 183 (309)
T d2igta1 115 EQIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAP 183 (309)
T ss_dssp GGHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSC
T ss_pred chhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhccc----CCc
Confidence 344455556655542 34678999999999999998887666 6999999999999999998766552 236
Q ss_pred eeEEEcCCCCCC----CCCCceeEEecchh-hhcC-------ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 214 TNFFCVPLQDFT----PETGRYDVIWVQWC-IGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 214 ~~~~~~d~~~~~----~~~~~fD~Vi~~~~-l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++|++.|+.++. ....+||+|++.-. +..- -..++..+++.+.++|+|||.+++.-.
T Consensus 184 ~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 184 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 899999986542 22368999997532 1110 022456788889999999997666543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.20 E-value=5.3e-12 Score=109.09 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=87.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
.++.+|||+.||+|.++..++..+..+|++||+|+.+++.+++++..+++. ..++++++.|+.++. ....+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhhcCCC
Confidence 367899999999999999888777778999999999999999999876652 246889999986542 234689
Q ss_pred eEEecchh-hh----cCC--hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWC-IG----HLT--DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~-l~----~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|++... +. ... ..+...+++.+.++|+|||+|+++-+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99997532 10 010 124678999999999999999997654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=2.8e-11 Score=97.86 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=64.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+ .+.++...|...+. ++||+|+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~-------~~~~~~~~d~~~~~---~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-------GKFKVFIGDVSEFN---SRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-------TSEEEEESCGGGCC---CCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC-------CCceEEECchhhhC---CcCcEEE
Confidence 3578999999999999998888877789999999999999999987643 45788888887753 6899999
Q ss_pred cchhhhc
Q 023787 236 VQWCIGH 242 (277)
Q Consensus 236 ~~~~l~~ 242 (277)
++..+..
T Consensus 115 ~nPP~~~ 121 (201)
T d1wy7a1 115 MNPPFGS 121 (201)
T ss_dssp ECCCCSS
T ss_pred EcCcccc
Confidence 9876543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=6.2e-12 Score=99.23 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC--CCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~fD~ 233 (277)
.++.+|||+|||+|.++..++.++. +++++|.|+.+++.+++++...++ ..++....+|.. .......+||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-----GARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-----CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc-----ccceeeeehhcccccccccCCccce
Confidence 3678999999999999998888876 599999999999999999877554 223333233221 11123468999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++...++.--.+.+..++. ..+|+|||++++.
T Consensus 114 If~DPPY~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 114 AFMAPPYAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp EEECCCTTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred eEEccccccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 99876654311112222322 3579999988874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=2.1e-11 Score=97.79 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=85.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
+.++..+||++||+|..+..+++..+. +|+|+|.++.|++.|++++... ..++.++++++.++. +..
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCC
Confidence 567889999999999999999988654 8999999999999999998763 346888998876642 334
Q ss_pred CceeEEecchhh--hcCC-----hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 229 GRYDVIWVQWCI--GHLT-----DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l--~~~~-----~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++||.|+.-..+ +.+. -......+..+.++|+|||.+++...
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 789999754322 1111 12466889999999999999998753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.7e-11 Score=98.33 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=83.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
..+.+|||||||+|..+..++..... +++.+|.++...+.|++++...++ ..+++++.+|+.+.. ..
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEEEEeehhhcchhhhhhcc
Confidence 35689999999999999999866442 899999999999999999987766 567899998864421 23
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.++||+|+...- .......+..+.+.|+|||.+++-+
T Consensus 133 ~~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 133 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 468999997543 2356678899999999999998854
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.7e-11 Score=98.85 Aligned_cols=117 Identities=9% Similarity=0.115 Sum_probs=85.2
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
..++..++.. .++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...|+ ..++++
T Consensus 45 G~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l 112 (214)
T d2cl5a1 45 GQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTI 112 (214)
T ss_dssp HHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEE
T ss_pred HHHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Ccccee
Confidence 3456665552 3567999999999999998886543 2899999999999999999887666 567999
Q ss_pred EEcCCCCCC------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 217 FCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 217 ~~~d~~~~~------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+.+|..+.. ...++||+|+.-..-... .....+.++.++|||||++++ ||+
T Consensus 113 ~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~-Ddv 169 (214)
T d2cl5a1 113 LNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLA-DNV 169 (214)
T ss_dssp EESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEE-SCC
T ss_pred eeccccccccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEE-eCc
Confidence 999876541 334689999976321110 112356778899999997654 554
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=1.4e-10 Score=96.39 Aligned_cols=100 Identities=15% Similarity=0.252 Sum_probs=82.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
...+|||||||+|.++..++++++. +++++|+.+ .++.+ .. ..++.+...|+.+. .+ ..|+++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-------~~-----~~r~~~~~~d~~~~-~P--~ad~~~ 144 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA-------PS-----YPGVEHVGGDMFVS-IP--KADAVF 144 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC-------CC-----CTTEEEEECCTTTC-CC--CCSCEE
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc-------cc-----CCceEEeccccccc-CC--CcceEE
Confidence 4568999999999999999999887 899999854 22211 11 46789999998653 23 357888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
...++|..++++...+|+++++.|+|||+++|.|.+.
T Consensus 145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~ 181 (243)
T d1kyza2 145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL 181 (243)
T ss_dssp CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence 9999999999999999999999999999999998763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.5e-10 Score=97.48 Aligned_cols=106 Identities=14% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
...+++|+|||+|..+..++.....+|+++|+|+.+++.|++|....+. ..++.+...++.+.. ...++||+|+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeecccccccccccCcccEEE
Confidence 4568999999999999987755434899999999999999999887655 456777888877643 2236899999
Q ss_pred cchhhh----cCC-------------hhhHHHHHHH-HHhcCCCCcEEEE
Q 023787 236 VQWCIG----HLT-------------DDDFVSFFKR-AKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~----~~~-------------~~d~~~~l~~-~~r~LkpGG~lii 267 (277)
|+-..- .++ .+|-..++++ +.+.|+|||++++
T Consensus 185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 884310 010 0111122222 5678999998877
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.9e-11 Score=94.99 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Vi 235 (277)
.+.+|||++||+|.++...+.+++.+|++||.++.+++.+++++...+. .+..++..|+.++ .....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------cceeeeeecccccccccccccCEEE
Confidence 4579999999999999999999999999999999999999999875432 4567777776554 23456899999
Q ss_pred cchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~ 268 (277)
+...... .....++..+.+ .|+|+|++++-
T Consensus 117 ~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 117 VDPPFRR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ECCSSST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EcCcccc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9876543 234466666654 69999998884
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.1e-10 Score=95.72 Aligned_cols=107 Identities=12% Similarity=-0.013 Sum_probs=78.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (277)
.+..+|||+|||+|..+..++.+.+. +++|+|+|+.+++.|++++..+++ ..++.+...+..... ..+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhccc
Confidence 44579999999999999988877654 899999999999999999988766 456777665443321 234
Q ss_pred CceeEEecchhhhcCCh---------------------------------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 229 GRYDVIWVQWCIGHLTD---------------------------------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~---------------------------------~d~~~~l~~~~r~LkpGG~lii 267 (277)
++||+|+|+..++...+ .....++++....++..|++.+
T Consensus 135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~ 206 (250)
T d2h00a1 135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 206 (250)
T ss_dssp CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEE
T ss_pred CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEE
Confidence 68999999987653210 0144567777788899888754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.05 E-value=7.8e-11 Score=93.70 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=82.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
.+.+|||++||+|.++...+.++..+|++||.++.+++.+++++...+. ..++++++.|+.++. ....+||
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhhhhhhcccCCCcc
Confidence 5789999999999999999999999999999999999999999865443 457889999876532 2345899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHh--cCCCCcEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii 267 (277)
+|++...... .+....+..+.. .|+|+|++++
T Consensus 116 lIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 116 LVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 9998876532 245567777654 6999998876
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.01 E-value=1.6e-10 Score=94.88 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=83.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------CC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 227 (277)
.+.+|||||+++|..+..++...+. +++.+|.++...+.|++++...|+ ..+++++.++..+.- ..
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCGGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHHHHHHHHHHhcccc
Confidence 5689999999999999999876543 899999999999999999988776 568999999875431 12
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++||+|+.-.- .......+..+.+.|+|||++++-
T Consensus 134 ~~~fD~iFiDa~-----k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 134 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred CCceeEEEeccc-----hhhhHHHHHHHHhhcCCCcEEEEc
Confidence 468999997542 235668899999999999998874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.96 E-value=2.5e-10 Score=96.50 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC----CCCCCcceeEEEcCCCCCCCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~ 230 (277)
.+++.+||.||+|.|..+..+++....+|++||+++.+++.|++.+...... .....++++++..|...+.-.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3467899999999999999888665568999999999999999887542210 001246788999987655333468
Q ss_pred eeEEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
||+|++-..-..-+... -..+++.+++.|+|||++++.
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 99999643321111111 247999999999999999875
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=1.7e-09 Score=92.73 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=80.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
.+.+.+||.||+|.|..+..+++... .+|++||+++.+++.|++.+..... +....++++++.+|..++. ..+.+||
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCccc
Confidence 34678999999999999998886543 3899999999999999998732100 0011467889999887653 2246899
Q ss_pred EEecchh--hh-cCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWC--IG-HLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~--l~-~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++-.. .. ..+... -..+++.+++.|+|||++++.
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 9995432 11 001111 147999999999999999874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.77 E-value=2.3e-08 Score=82.21 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=64.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.+|..+++... +|++||+++.+++.+++++.. ..++.++.+|+.++.++......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhhhcccccccccee
Confidence 56889999999999999999997754 699999999999999998876 468999999999887664444456
Q ss_pred ecchhhhcCC
Q 023787 235 WVQWCIGHLT 244 (277)
Q Consensus 235 i~~~~l~~~~ 244 (277)
+++... +++
T Consensus 90 v~NLPY-nIs 98 (235)
T d1qama_ 90 FGNIPY-NIS 98 (235)
T ss_dssp EEECCG-GGH
T ss_pred eeeehh-hhh
Confidence 655554 443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.76 E-value=6.8e-09 Score=89.62 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=76.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC----CC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY----FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~----~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (277)
..++.+|||.|||+|.+...+..+. .. .++|+|+++.++..|+.+....+ ....+...|...... .
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~-~ 186 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANLL-V 186 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCCC-C
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-------hhhhhhccccccccc-c
Confidence 4567899999999999998776541 11 79999999999999988765432 235556666544332 3
Q ss_pred CceeEEecchhhhcCChh----------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDD----------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~----------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+||+|+++..+...... -...++..+.+.|+|||++++.
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 689999999776432211 1234799999999999988775
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.76 E-value=7.7e-09 Score=81.90 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=78.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CCCCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~fD~ 233 (277)
.+.+|||+-||||.++...+.+++..|+.||.+...++..+++++..+.. .....+...|..+ ......+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----ccccccccccccccccccccCCcccE
Confidence 45799999999999999999999999999999999999999998754431 1234455554322 2233457999
Q ss_pred EecchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~ 268 (277)
|++-..... . .....+..+.. +|+++|++++-
T Consensus 119 IFlDPPY~~-~--~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 119 VFLDPPFHF-N--LAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp EEECCCSSS-C--HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEechhHhh-h--hHHHHHHHHHHhCCcCCCcEEEEE
Confidence 998877543 2 45567777654 79999988873
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=4.8e-09 Score=89.04 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
+.+.+||-||.|.|..+..+++... .+|++||+++.+++.|++.+..... ....++++++..|...+- -.+++||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 4678999999999999998886543 4899999999999999997743210 011467888988876653 23468999
Q ss_pred Eecchhhhc-CChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGH-LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~-~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++-..-.. .+... -..+++.+++.|+|||++++.
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 996432211 11001 247999999999999999885
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.70 E-value=7.2e-09 Score=88.39 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=86.4
Q ss_pred cccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCc
Q 023787 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (277)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~ 212 (277)
+...+.+.+....... .+.+.+||-||.|.|..+..+++... .+|+.||+++.+++.+++.+..... ....+
T Consensus 88 de~~YhE~l~h~pl~~-----~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dp 160 (312)
T d2b2ca1 88 DEFSYQEMLAHLPMFA-----HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHP 160 (312)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCT
T ss_pred cHHHHHHHhhhHHHhc-----CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCCC
Confidence 3344455555433211 34678999999999999999886443 4899999999999999998764321 11246
Q ss_pred ceeEEEcCCCCCC-CCCCceeEEecchhhhcCChh--hHHHHHHHHHhcCCCCcEEEEE
Q 023787 213 ATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 213 ~~~~~~~d~~~~~-~~~~~fD~Vi~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++++..|...+. ....+||+|++-..-..-+.. --..+++.+++.|+|||+++..
T Consensus 161 rv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp TEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred CeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 7888888876553 234689999964322111111 1347899999999999999986
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.70 E-value=1.6e-08 Score=85.03 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=80.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
..+.+||-||.|.|..+..+++.. ..+|+.||+++.+++.|++.+.... +....++++++..|...+. -.+.+||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~--~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA--GKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH--TTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc--ccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 467899999999999999888643 3489999999999999999874311 0111468899999876642 23468999
Q ss_pred EecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++-..-..-+... -..+++.+++.|+|||+++..
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 99553211100000 237999999999999999875
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=1.1e-07 Score=76.41 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=81.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|+|+|+|.|.-+..++-.++. +++.+|.+..=+...++.....++ .++.+++..++++... .+||+|+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~~~~~-~~fD~V~ 137 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPSE-PPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCCC-SCEEEEE
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhhhccc-cccceeh
Confidence 3468999999999999988877776 899999999988877776655444 5788999999887543 5899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+- .+..++.-+...+++||.+++.
T Consensus 138 sRA~~------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 138 SRAFA------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CSCSS------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhc------CHHHHHHHHHHhcCCCcEEEEE
Confidence 87663 4558999999999999999886
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.68 E-value=2.4e-08 Score=84.60 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
.+.+.+||-||.|.|..+..+++... .++++||+++.+++.+++.+..... ....++++.+..|...+- ..+++|
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhhccccCc
Confidence 34678999999999999998886533 4899999999999999997642110 011467888888865542 334689
Q ss_pred eEEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|++-..-..-+... -..+++.+++.|+|||++++.
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9999532211001011 247999999999999999986
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.4e-08 Score=85.87 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
.+.+.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+.... .....++++++..|...+- ...++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~--~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--IGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc--cccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3467899999999999999988543 3489999999999999999874210 0011468889988876543 2346899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++-..-..-+... -..+++.+++.|+|||++++.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 999653211000001 236899999999999999986
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.62 E-value=2.7e-09 Score=88.35 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.+|..+++.+. +|++||+++.+++.+++++.. ..++.++++|+.++.++...++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhccccccceeeeE
Confidence 45778999999999999999998755 699999999999988877765 468999999999998887777878
Q ss_pred ecchhhhcCChhhHHHHH
Q 023787 235 WVQWCIGHLTDDDFVSFF 252 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l 252 (277)
+++... |++.+-+..++
T Consensus 98 v~NLPY-~Ist~il~~~l 114 (245)
T d1yuba_ 98 VGNIPY-HLSTQIIKKVV 114 (245)
T ss_dssp EEECCS-SSCHHHHHHHH
T ss_pred eeeeeh-hhhHHHHHHHh
Confidence 877775 55533333333
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=7.2e-08 Score=77.87 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=69.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||.|||+|.++..+.+.... .++|+|+++..+..+ ....+++.|....... ..||
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~fd 80 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFD 80 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeeeeehhccccc-cccc
Confidence 457789999999999998888766443 699999987654321 2345666666554433 6899
Q ss_pred EEecchhhhcCCh--------------------------h-hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTD--------------------------D-DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~--------------------------~-d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+++..+..... . -...++..+.+.|+|||++++.
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 9998866432110 0 1246788999999999998876
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.5e-07 Score=79.47 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (277)
..++.+|||+-||+|.++..|++ ...+|+|+|.++.+++.|+++...+++ .++.|+.++..+.. ....+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~~~~~~~~~~~~~~~~~ 282 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 282 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred cCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhccc------ccceeeecchhhhhhhhhhhhcc
Confidence 45678999999999999998874 455799999999999999999887765 67899998887643 22467
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|+..-.=.-+ ..+++.+.+ ++|.-+++++-|
T Consensus 283 ~d~vilDPPR~G~-----~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 283 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESC
T ss_pred CceEEeCCCCccH-----HHHHHHHHH-cCCCEEEEEeCC
Confidence 9999876543332 234555554 367778888744
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=3.9e-07 Score=71.65 Aligned_cols=104 Identities=20% Similarity=0.156 Sum_probs=79.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (277)
+.++..++|..||.|..+..+++... +|+|+|..+.+++.+++.. ..++.+++..+.++. ...+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCC
Confidence 56888999999999999999998765 6999999999999998753 346888888776653 2346
Q ss_pred ceeEEecchhh--hcCCh-----hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCI--GHLTD-----DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l--~~~~~-----~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|.|+.-..+ +++.+ ......|......|+|||.+++..
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 79999854322 11111 124567888999999999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=6.7e-07 Score=70.16 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
.++.+|||+||++|.++..+.+... ..++++|+.+ ... ..++.++.+|+.+..
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~--------i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDP--------IVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCC--------CTTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccc--------cCCceEeecccccchhhhhhhhh
Confidence 4778999999999999998876533 3799999754 111 356888999887642
Q ss_pred CCCCceeEEecchhhhcCChhh---------HHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d---------~~~~l~~~~r~LkpGG~lii~ 268 (277)
...++||+|+|-.+...-...+ ....+.-+.+.|++||.|++.
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 2346899999876644322111 345677888999999999986
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=5.7e-06 Score=69.05 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++..|||||+|+|.+|..+++.+. +|+++|+++.+++..++.+..... ..+++++.+|+..+.++ .++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhcc-----ccchhhhHHHHhhhhhh--hhhhh
Confidence 45678999999999999999998865 699999999999999999876432 36789999999887655 35677
Q ss_pred ecchhhh
Q 023787 235 WVQWCIG 241 (277)
Q Consensus 235 i~~~~l~ 241 (277)
+++...+
T Consensus 91 V~NLPY~ 97 (278)
T d1zq9a1 91 VANLPYQ 97 (278)
T ss_dssp EEECCGG
T ss_pred hcchHHH
Confidence 7776643
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=6.5e-07 Score=73.20 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD 232 (277)
...+|+|||+|.|.-+..++-..+. +++.+|.+..=+...+.-....++ .++.+++..++++.. ..++||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccce
Confidence 4578999999999988877765555 899999999877766655444443 467777776655432 135899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..+- .+..++.-+...+++||.+++.
T Consensus 144 ~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 144 IVTARAVA------RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEEEECCS------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEhhhh------CHHHHHHHHhhhcccCCEEEEE
Confidence 99998653 5668999999999999999885
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.13 E-value=3.8e-06 Score=74.58 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=77.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--------------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--------------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d 220 (277)
+.++.+|+|-.||+|.+...+.+... ..+.|+|+++.+...|+-++--.+.. .....+...|
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----~~~~~i~~~d 235 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 235 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----cccceeecCc
Confidence 45678999999999999887765421 14999999999999998776443321 1234566666
Q ss_pred CCCCCCCCCceeEEecchhhhcCChh---------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 221 LQDFTPETGRYDVIWVQWCIGHLTDD---------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 221 ~~~~~~~~~~fD~Vi~~~~l~~~~~~---------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..... +..+||+|+++..+..-... .-..++..+...|+|||++.+.
T Consensus 236 ~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 236 SLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp TTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 65433 34689999999877432110 1235999999999999988775
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.10 E-value=1.5e-06 Score=70.91 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=65.4
Q ss_pred CCccEEEeeccccHHHHHHHHh----CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CC
Q 023787 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~----~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~ 227 (277)
++.+|||||++.|..+..++.. +. .+++++|+.+........ ...++.++.+|..+.. ..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----------~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----------cccceeeeecccccHHHHHHHH
Confidence 5679999999999887755532 22 389999997643222111 1367899999876543 23
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
...+|+|+.-.. |+ ....+.. + +....|+|||+++|-|++
T Consensus 149 ~~~~dlIfID~~-H~-~~~v~~~-~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSCSSEEEEESS-CS-SHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred hcCCCEEEEcCC-cc-hHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence 346888876544 33 3223333 2 356899999999998764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.97 E-value=0.00011 Score=59.56 Aligned_cols=104 Identities=13% Similarity=-0.043 Sum_probs=61.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCC-CcceeEEEc-CCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCV-PLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~~-d~~~~~~~~~~f 231 (277)
..+..+|+|+|||.|.++..++.... ..|.|+++--.. ...+...... ..-+++... ++..+ +++..
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~ 133 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIPMSTYGWNLVRLQSGVDVFFI--PPERC 133 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCTTTS--CCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCccccccccccccchhhhhHHhc--CCCcC
Confidence 45778999999999999997775532 267888773211 0000000000 112344333 33332 34789
Q ss_pred eEEecchhhhcCC----hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLT----DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~----~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|+|-.+-..-. ......++.-+.+.|+|||.|++.
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 9999876532111 112345777888999999998885
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=3e-06 Score=69.86 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
..++..|||||||+|.+|..|++.. .+|+++|+++.+++..+++... ..+++++.+|+.++.+
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCH
T ss_pred CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh--------ccchhHHhhhhhhhcc
Confidence 4567899999999999999998665 4699999999999999886654 4689999999987653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.95 E-value=9.8e-06 Score=68.90 Aligned_cols=109 Identities=19% Similarity=0.160 Sum_probs=78.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+.++.+|||+.||.|.=+..++..... .++++|.++.-+...++++...+. .++.....|...++.....||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence 568899999999999988888766443 699999999999999888776543 445566666665554457899
Q ss_pred EEec----c--hhhhcC-------Chhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWV----Q--WCIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~----~--~~l~~~-------~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++ + +++..- ..++ ..+++.++.+.|||||+++.+.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 9983 2 222211 1111 3567889999999999988763
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=4.9e-06 Score=72.46 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=76.2
Q ss_pred CCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCC---------CCcceeEEEcCCCCCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPD---------MHKATNFFCVPLQDFTP 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~ 226 (277)
.+.+|||..||+|..+...+.. +..+|+++|+|+..++.+++++..++..... ....+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4579999999999999976654 4558999999999999999998765543211 11234455555433221
Q ss_pred -CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 -~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
....||+|..-. +. ....++..+.+.++.||.+.++
T Consensus 125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEE
Confidence 235799988664 22 2237999999999999999997
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=2.7e-05 Score=65.17 Aligned_cols=109 Identities=19% Similarity=0.072 Sum_probs=76.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
+.++.+|||+.+|.|.=|..++..+.. .|+++|+++.-+...++++...|. .++.....+..... ...+.||
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHHTTCCEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccchhccccccc
Confidence 567889999999999999988876554 799999999999999988877554 22333333332211 2346899
Q ss_pred EEec----c--hhhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWV----Q--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~----~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++ + +++..-++ .+ ...+|.++.+.|||||+++.+.
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 9982 2 23322221 11 3567899999999999998873
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=1.9e-05 Score=71.75 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=73.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-------------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-------------------~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 215 (277)
+.++.+|+|-.||+|.+.....+.. ...+.|+|+++.+...|+-++--.+... .......
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~-~i~~~~~ 240 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGA 240 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC-BGGGTBS
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc-cccccch
Confidence 5567899999999999987665431 0158999999999999987764433211 0011223
Q ss_pred EEEcCCCCCC-CCCCceeEEecchhhhcCChh------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTDD------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 216 ~~~~d~~~~~-~~~~~fD~Vi~~~~l~~~~~~------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+...+..... ....+||+|+++..+..-... .-..++..+.+.|+|||++.++
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 3333332211 223579999998766421100 1235899999999999998876
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=7.6e-05 Score=62.60 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=59.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (277)
+.++.+|||+.||.|.-+..++... ...|+++|+++.=++.+++++...|. .++.+...|...+... .+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcccccccc
Confidence 5678899999999999888887652 23799999999999999999887654 5677788887665432 25
Q ss_pred ceeEEe
Q 023787 230 RYDVIW 235 (277)
Q Consensus 230 ~fD~Vi 235 (277)
.||.|+
T Consensus 166 ~fD~VL 171 (293)
T d2b9ea1 166 EVHYIL 171 (293)
T ss_dssp TEEEEE
T ss_pred eeeEEe
Confidence 799998
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.20 E-value=0.00054 Score=53.66 Aligned_cols=101 Identities=9% Similarity=-0.124 Sum_probs=66.2
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||-+|||. |..+..+++. +..+|+++|.++.-++.|++.-.. .. .+..+..
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------------~~-~~~~~~~~~~~i~~ 88 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------------IA-DLSLDTPLHEQIAA 88 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------------EE-ETTSSSCHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------------EE-EeCCCcCHHHHHHH
Confidence 56888999999998 6676766654 455899999999999999876322 11 1111111
Q ss_pred -CCCCceeEEecchhh------hc-CChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 -PETGRYDVIWVQWCI------GH-LTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l------~~-~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....+|+++-.-.. ++ +........++.+.+.++|||++++.-
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 112468988843211 11 111122368999999999999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.17 E-value=0.0015 Score=49.49 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=65.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
..++.+||-+||| .|.++..+++....+|+++|.++.-++.|++.... ..+...+..+..
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~-----------~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-----------VTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-----------EEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc-----------EEEeccccccccchhhhhhh
Confidence 5577899999998 67777777776666899999999999999886432 111111111100
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...+.+|+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 93 ~~~g~g~D~vid~~g~------~--~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSGN------E--KCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHSSSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECSC
T ss_pred cccccCCceeeecCCC------h--HHHHHHHHHHhcCCceEEEec
Confidence 012468888743321 1 577888899999999998743
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.13 E-value=0.0004 Score=59.51 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=73.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHh--------------CCC---cEEEEeCCHHHHHHHHHHhC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--------------YFN---EVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~--------------~~~---~v~gvD~S~~~l~~a~~~~~ 201 (277)
...+...+.............+|.|+||.+|..|..+... ... +|..-|+-..=-...=+.+.
T Consensus 33 kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~ 112 (359)
T d1m6ex_ 33 KPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP 112 (359)
T ss_dssp HHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT
T ss_pred HHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcc
Confidence 3444444444322112334578999999999887432211 011 55666643332222212221
Q ss_pred CCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCCh-------------------------------hhHHH
Q 023787 202 PENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVS 250 (277)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~-------------------------------~d~~~ 250 (277)
...- .....-+..+.+.+-+=.+|+++.++++|++++|+++. .|+..
T Consensus 113 ~~~~--~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~ 190 (359)
T d1m6ex_ 113 IEND--VDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHAL 190 (359)
T ss_dssp TSCS--CTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHH
T ss_pred cccc--CCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1100 00000122233455444578899999999999999752 26788
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 023787 251 FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 251 ~l~~~~r~LkpGG~lii~ 268 (277)
+|+.=++-|+|||+++++
T Consensus 191 FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 191 FLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp HHHHHHHHBCTTCEEEEE
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 999999999999999996
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.04 E-value=0.0015 Score=50.09 Aligned_cols=99 Identities=15% Similarity=0.052 Sum_probs=63.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----C--C
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T--P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~--~ 226 (277)
..++.+||-+||| .|..+..+++... .+|+++|.++.-++.+++.-... -++....+..+. . .
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL---------TLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE---------EEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE---------EEeccccchHHHHHHHHHhh
Confidence 4578899999998 4777877877654 47999999999999997753220 010000111000 0 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....+|+|+-.-.- . ..++.+.+.|+|||++++.-.
T Consensus 97 ~~~g~Dvvid~vG~------~--~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 97 HGRGADFILEATGD------S--RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred CCCCceEEeecCCc------h--hHHHHHHHHhcCCCEEEEEee
Confidence 12469998844321 1 467788899999999988643
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.00069 Score=57.30 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (277)
..+..|||||.|.|.+|..++..+ +.+|+++|+++.+.+..++.+.. .++.++..|+..
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---------~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---------SPLQILKRDPYD 101 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---------SSCEEECSCTTC
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---------CCcEEEeCchhh
Confidence 356789999999999999999774 56899999999999999988754 356777777654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.00014 Score=55.56 Aligned_cols=97 Identities=19% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-~~~~~f 231 (277)
..++.+||-+|+| .|.++..+++....+|+++|.|+.-++.+++.-.+ .++. .+-.+.. ...+.|
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~------------~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSCSCE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc------------EEeeccchHHHHHhhhccc
Confidence 5678899999999 77788877766445799999999999999876332 1111 1111111 123579
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|+..-.-.+ + ..+..+.+.|+|+|++++.-
T Consensus 93 d~vi~~~~~~~----~--~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 93 DLIVVCASSLT----D--IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEECCSCST----T--CCTTTGGGGEEEEEEEEECC
T ss_pred ceEEEEecCCc----c--chHHHHHHHhhccceEEEec
Confidence 98885432211 1 12445788999999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.002 Score=49.02 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=64.6
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 229 (277)
..++.+||-.|+ |.|..+..+++....+|++++.|++-++.+++.-.. .-+++...|+.+. .....
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~---------~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH---------EVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS---------EEEETTSTTHHHHHHHHHCTT
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc---------cccccccccHHHHhhhhhccC
Confidence 567889999996 578888888877666799999999888888764322 1111111111000 01235
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+.+-. . ..+....+.|+|+|+++..-
T Consensus 97 g~d~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEESCH-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeeccc-------H--HHHHHHHhccCCCCEEEEEe
Confidence 7999986543 2 46777889999999999863
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.94 E-value=0.0021 Score=49.12 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=64.3
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
..++.+||-+|||. |..+..+++... .+|+++|.++.-++.+++.-.. .++...-.++. .
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~------------~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT------------DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS------------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc------------ccccccchhHHHHHHHHh
Confidence 56788999999996 888888887644 4799999999999999875322 11111101100 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....||+|+-+-.- . ..++.+.+.++|+|++++.-
T Consensus 93 ~g~G~D~vid~~g~------~--~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------S--ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 12459998754331 1 46677888999999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.73 E-value=0.0031 Score=47.41 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=61.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
..++.+||=+||| .|..+..+++....+|+++|.++.-++.+++.-.. .++...-.+.. ...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS------------LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc------------ccccccchhHHHHHHHhhc
Confidence 4577899999998 46667767766556899999999999999875322 11211111110 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.+|.|++... . ..+..+.+.|+|||++++.-
T Consensus 93 g~~~~i~~~~~-------~--~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLVTAVS-------N--SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SEEEEEECCSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCccccccccc-------c--hHHHHHHHHhcCCcEEEEEE
Confidence 34455554333 1 46778889999999998863
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.46 E-value=0.00059 Score=55.44 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCC---CCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA---PDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
...+|||+-||.|..+..++..+. +|+++|-++.+....+..+....... .....+++++++|..++. -...+||
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 445899999999999999887776 59999999987665554332110000 001247899999865543 2246799
Q ss_pred EEecchhhh
Q 023787 233 VIWVQWCIG 241 (277)
Q Consensus 233 ~Vi~~~~l~ 241 (277)
+|+.-..+.
T Consensus 167 vIYlDPMFp 175 (250)
T d2oyra1 167 VVYLDPMFP 175 (250)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999655543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.013 Score=44.14 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=62.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||=+|||. |..+..+++. ++.+|+++|.++.-++.|++.-.. .++..+-.+..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~------------~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------------LVLQISKESPQEIARKVE 91 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc------------cccccccccccccccccc
Confidence 55778999999985 4455555555 444899999999999999875322 11111111110
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.....+|+|+-+-.- . ..++.+.+.++|||++++.-.
T Consensus 92 ~~~g~g~Dvvid~~G~------~--~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHTSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCCCceEEEeccCC------c--hhHHHHHHHhcCCCEEEEEec
Confidence 012468888754331 2 578889999999999998754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.42 E-value=0.0061 Score=46.43 Aligned_cols=95 Identities=13% Similarity=-0.101 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+||=+|||. |..+..+++... ..|+.+|.++.-++.|++.-.. .++...-.+..
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC------------cccCCccchhhhhhhHhh
Confidence 56788999999997 888887777644 4799999999999988885332 11111111100
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
...+.+|+|+-+-.- . ..+..+.+.++|| |++++.-
T Consensus 94 ~~~~G~d~vie~~G~------~--~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGT------A--QTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHTSCBSEEEESSCC------H--HHHHHHHHTBCTTTCEEEECC
T ss_pred hhcCCCcEEEEeccc------c--hHHHHHHHHhhcCCeEEEecC
Confidence 112568888743321 2 5788999999996 9998864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.0098 Score=44.44 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=60.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------C
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~ 226 (277)
..++.+||=.|||. |..+..+++....+|+++|.++.-++.+++.-.. .. .+..+.. .
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------------~~-~~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------------LV-VNPLKEDAAKFMKEK 90 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------------EE-ECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------------ee-cccccchhhhhcccc
Confidence 45788999999985 4555556655555899999999999999874322 11 1111111 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.++.+|+|++... . ..+..+.+.|+|||++++.-
T Consensus 91 ~~~~~~~v~~~~~-------~--~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 91 VGGVHAAVVTAVS-------K--PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HSSEEEEEESSCC-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred cCCCceEEeecCC-------H--HHHHHHHHHhccCCceEecc
Confidence 1234555544322 2 57788899999999999864
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.24 E-value=0.011 Score=48.87 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=69.4
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~ 237 (277)
++|+|+=||.|.++..+-..++.-+.++|+++.+.+.-+.++.. .....|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS------------EEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CCccCChhhCCHhHcccccEEeec
Confidence 36999999999999988888888788999999999988888643 3466888887532 2368999855
Q ss_pred hhhhcC---------Chh--hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 238 WCIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 238 ~~l~~~---------~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.....+ .++ .+---+-++...++| .+++.||+.
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~P--k~~~lENV~ 112 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP--IFFLAENVK 112 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred ccccccccccccccccccccchHHHHHHHHHhhCC--ceeeccccc
Confidence 433222 111 122223345566788 477779875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.15 E-value=0.018 Score=43.45 Aligned_cols=95 Identities=13% Similarity=-0.045 Sum_probs=62.8
Q ss_pred CCCCccEEEeecccc-HHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
..++.+||-+|||.- ..+..+++. +...|+++|.++.-++.+++.-.. .++..+-.+.. ..
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------------EEEeCCCcCHHHHHHHHc
Confidence 567889999999854 445555544 555788999999999999875322 12222211110 22
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++.||+|+-+-.- . ..++.+.++++|+|++++.-
T Consensus 94 ~gg~D~vid~~G~------~--~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 94 DGGVNFALESTGS------P--EILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp TSCEEEEEECSCC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCcEEEEcCCc------H--HHHHHHHhcccCceEEEEEe
Confidence 3579998844321 2 57788899999999999863
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.04 E-value=0.018 Score=43.13 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCCCccEEEeec-c-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 155 NNQHLVALDCGS-G-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 155 ~~~~~~VLDiGc-G-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
..++.+||=+|| | .|..+..+++. +...|+++|.++.-++.+++.-.. .++..+-.+..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~------------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc------------eeeccCCcCHHHHHHHH
Confidence 567889999997 3 66666666554 556899999999999999875322 11221111110
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.||+|+....- . ..++.+.+.++|||++++.-
T Consensus 93 ~~~~~~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 93 TESKGVDAVIDLNNS------E--KTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTTSCEEEEEESCCC------H--HHHTTGGGGEEEEEEEEECC
T ss_pred hhcccchhhhccccc------c--hHHHhhhhhcccCCEEEEec
Confidence 123569999865431 2 56677889999999999874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.004 Score=52.11 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=65.2
Q ss_pred CccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCcee
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD 232 (277)
+.+|+|+-||.|.++..+-..++. -+.++|+.+.+++..+.++.. ..+++.|+.++.. +...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------CCcccCchhhCCHhHcCCCCcc
Confidence 578999999999999888767764 367999999999999888654 3445667766542 123689
Q ss_pred EEecchhhhcCC--------hhhHHHHHHHHHhc---C--CCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLT--------DDDFVSFFKRAKVG---L--KPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~--------~~d~~~~l~~~~r~---L--kpGG~lii~e~~~~ 273 (277)
+++.......++ +++...++-++.++ + || .+++.||+..
T Consensus 71 ll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~ 122 (343)
T d1g55a_ 71 MILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKG 122 (343)
T ss_dssp EEEECCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETT
T ss_pred EEEeecccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCC
Confidence 988554333221 11222344444444 3 46 4677799864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.83 E-value=0.011 Score=49.28 Aligned_cols=101 Identities=14% Similarity=0.024 Sum_probs=69.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi 235 (277)
.+.+|||+=||.|.++..+-..++.-+.++|+++.+++.-+.++... .+.|+.++... -..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeeee
Confidence 56899999999999999988888877888999999999999998652 13555555322 23689998
Q ss_pred cchhhhcCC-----------hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLT-----------DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~-----------~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
......-++ ...+-..+-++.+.++|. +++.||+.
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~ 122 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVK 122 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccch
Confidence 543222111 112333344555667885 67778875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.74 E-value=0.033 Score=41.74 Aligned_cols=94 Identities=14% Similarity=-0.068 Sum_probs=61.6
Q ss_pred CCCccEEEeecccc-HHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 156 NQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG-~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
.++.+||-+|||.. ..+..+++. +...|+++|.++.-++.+++.... .++..+-.... ...
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~------------~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD------------HVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc------------eeecCcccHHHHHHHhhCC
Confidence 46789999999854 444555543 556899999999999998875432 11211100000 122
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+-.-.- . ..++...+.|++||++++.-
T Consensus 99 ~g~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 99 RGVNVAMDFVGS------Q--ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp CCEEEEEESSCC------H--HHHHHGGGGEEEEEEEEECC
T ss_pred CCceEEEEecCc------c--hHHHHHHHHHhCCCEEEEEe
Confidence 469988854431 1 46788899999999999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.64 E-value=0.018 Score=49.06 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC------C--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF------N--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~------~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
.++..+|+|+|+|+|.++..++.... . ++..+|.|+.+.+.-++++.. ..++.++ .++.+.+
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--------~~~i~w~-~~~~~~~- 146 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--------IRNIHWH-DSFEDVP- 146 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--------CSSEEEE-SSGGGSC-
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--------cccceec-cChhhcc-
Confidence 34567899999999999988765421 1 689999999988888877765 2334433 3344433
Q ss_pred CCCceeEEecchhhhcCC
Q 023787 227 ETGRYDVIWVQWCIGHLT 244 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~ 244 (277)
...-+|+++..+..+|
T Consensus 147 --~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 147 --EGPAVILANEYFDVLP 162 (365)
T ss_dssp --CSSEEEEEESSGGGSC
T ss_pred --cCCeEEEecccCcccc
Confidence 1236788888887776
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.63 E-value=0.0025 Score=48.26 Aligned_cols=99 Identities=8% Similarity=0.066 Sum_probs=66.5
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
-++.+|+-||+|. |..+...+......|+.+|.+++-++..+..+.. ++++...+-..+...-...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcEE
Confidence 3678999999994 6677777777777899999999999998887643 2444433322221111368999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
|..-.+---+ -..-+-+++.+.+|||.+++
T Consensus 100 I~aalipG~~--aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 100 IGAVLVPGRR--APILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EECCCCTTSS--CCCCBCHHHHTTSCTTCEEE
T ss_pred EEeeecCCcc--cCeeecHHHHhhcCCCcEEE
Confidence 9765543222 11234567888999999876
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.52 E-value=0.024 Score=42.90 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=62.2
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
.+++.+||=.| .|.|..+..+++....++++++-+++-.+.+++.-.. ..+.-.-.++. .
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~------------~vi~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE------------YVGDSRSVDFADEILELT 90 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS------------EEEETTCSTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc------------ccccCCccCHHHHHHHHh
Confidence 45778999877 4577888888877666788888888888888754221 11111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
....||+|+..-. . ..++.+.+.|+|+|+++..
T Consensus 91 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEeccc-------c--hHHHHHHHHhcCCCEEEEE
Confidence 2357999996543 2 4567788999999999986
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.02 Score=42.92 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=62.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
.+++.+||=+||| .|.++..+++....+++++|.++.-++.+++.-.+ .++...-.+. ......||
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad------------~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD------------EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEETTCHHHHHTTTTCEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc------------EEEECchhhHHHHhcCCCc
Confidence 5678899999998 47777878876655788999999988888765432 1111110000 11225799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+-.-.- . ..+....+.++|||++++.-
T Consensus 96 ~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 96 FILNTVAA------P--HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEECCSS------C--CCHHHHHTTEEEEEEEEECC
T ss_pred eeeeeeec------c--hhHHHHHHHHhcCCEEEEec
Confidence 88854321 1 24566778999999999863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.057 Score=40.49 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=63.7
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C--CCCC
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~ 229 (277)
..++.+||=.|+| .|..+..+++....+|++++.|++-++.+++.-.. .-+++...|+.+- . ....
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~---------~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW---------QVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS---------EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe---------EEEECCCCCHHHHHHHHhCCC
Confidence 4577899998665 57788888877666899999999999999876432 1111111111100 0 1235
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.+|+|+..-.- ..+......++|+|++++.-.
T Consensus 97 g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 97 KVRVVYDSVGR---------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp CEEEEEECSCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred CeEEEEeCccH---------HHHHHHHHHHhcCCeeeeccc
Confidence 79988765431 245678889999999887543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.21 E-value=0.054 Score=40.15 Aligned_cols=86 Identities=12% Similarity=-0.031 Sum_probs=58.0
Q ss_pred cEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|.=||+| -+.++..+.+.++ +|+++|.+++.++.+++.-. ++....+.+.. ...|+|+.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL------------VDEAGQDLSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS------------CSEEESCGGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc------------cceeeeecccc----ccccccccc
Confidence 57778888 4456666666666 59999999999988876421 11112222221 357988864
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
- |......+++++...|+++-+++-
T Consensus 65 v-----p~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 65 T-----PIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp S-----CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred C-----cHhhhhhhhhhhhhhcccccceee
Confidence 4 344677899999999999887654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.21 E-value=0.013 Score=44.62 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=65.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (277)
..++.+||--|+ |.|.++..+++....+|+++.-|++-.+.+++.-.+ ..++....+.+.. ....+.|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~---------~vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------EEEECC---------CCSCCE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc---------eeeecchhHHHHHHHhhccCc
Confidence 345778999885 567788888877666799999999989998875433 1122111111111 1234689
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|+-.-. . ..+....+.|+|||+++..-..
T Consensus 100 D~vid~vg-------g--~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 100 AAAVDPVG-------G--RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEEEECST-------T--TTHHHHHHTEEEEEEEEECSCC
T ss_pred CEEEEcCC-------c--hhHHHHHHHhCCCceEEEeecc
Confidence 98885433 1 3577888999999999987544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.19 E-value=0.053 Score=40.33 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=58.1
Q ss_pred cEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+|+=||||. |.++..+.+.++. +|+++|.+++.++.+++.... .....+.... .....|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~------------~~~~~~~~~~--~~~~~dlIil 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKV--EDFSPDFVML 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG--GGTCCSEEEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc------------hhhhhhhhhh--hccccccccc
Confidence 588899984 3456666656654 799999999999999875321 1111221111 1235788886
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+-.. .....++.++...++++-.++
T Consensus 69 a~p~-----~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 69 SSPV-----RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp CSCH-----HHHHHHHHHHHHHSCTTCEEE
T ss_pred cCCc-----hhhhhhhhhhhcccccccccc
Confidence 6553 356688899999999886654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.99 E-value=0.017 Score=47.45 Aligned_cols=59 Identities=7% Similarity=-0.034 Sum_probs=46.8
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
+..++..++... .+++..|||.=||+|..+...... ..+.+|+|+++..++.|++++..
T Consensus 236 P~~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 345566666533 357899999999999999965544 45799999999999999999876
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.96 E-value=0.027 Score=44.69 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
+..++..++... ..++..|||.=||+|..+.... ....+.+|+|+++..++.|++++.
T Consensus 198 P~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence 345566655533 3478899999999999998554 545579999999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.67 E-value=0.081 Score=39.83 Aligned_cols=48 Identities=8% Similarity=-0.189 Sum_probs=37.1
Q ss_pred CCCCccEEEeecccc-HHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCC
Q 023787 155 NNQHLVALDCGSGIG-RITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
.+++.+|+=+|||.. ..+..+++.. ..+|+++|.+++-++.|++.-..
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 567889999999854 4455555444 45899999999999999988654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.63 E-value=0.1 Score=39.14 Aligned_cols=99 Identities=12% Similarity=-0.160 Sum_probs=58.8
Q ss_pred CCCCccEEEeeccccH-HHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC--CC--CCCC
Q 023787 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DF--TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~-~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~--~~--~~~~ 228 (277)
.+++.+||-+|||... .+..+++. +..+|+++|.++.-++.|++.-... .+++...|.. +. ....
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---------~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---------CLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---------EECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---------EEcCCCchhHHHHHHHHhcC
Confidence 5688999999998544 44445543 5568999999999999998753321 1111111110 00 0112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcC-CCCcEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~e~ 270 (277)
+.+|+|+-.-.. ...+......+ +++|.+++.-.
T Consensus 96 ~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 96 GGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEEE
Confidence 468888754321 14555555555 45699888644
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.58 E-value=0.095 Score=39.47 Aligned_cols=94 Identities=10% Similarity=-0.009 Sum_probs=64.8
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
.+++.+||-.|++ .|..+..+++....+|++++-+++-++.+++.-.. ..+.-.-+++. .
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD------------AAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCSCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh------------hhcccccccHHHHHHHHh
Confidence 5678899988875 56777888877767899999999988888876432 11111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....+|+|+-+-. . ..++.+.+.|+|||.+++.-
T Consensus 95 ~~~Gvd~v~D~vG-------~--~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESSC-------H--HHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEecC-------c--hhhhhhhhhccCCCeEEeec
Confidence 2356999885432 2 47788999999999999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.01 Score=44.81 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=60.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+||-.|+ |.|..+..+++....+|++++.++.-++.+++.-.+ ..+++ .+..........+|
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~---------~~i~~--~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE---------EAATY--AEVPERAKAWGGLD 93 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS---------EEEEG--GGHHHHHHHTTSEE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc---------eeeeh--hhhhhhhhcccccc
Confidence 457889999884 457788888877666899999999888888764322 11111 11000001124699
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+-.. . ..+....+.|+|||++++.
T Consensus 94 ~v~d~~-----G-----~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLEVR-----G-----KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEECS-----C-----TTHHHHHTTEEEEEEEEEC
T ss_pred cccccc-----c-----hhHHHHHHHHhcCCcEEEE
Confidence 988532 1 1245677899999999875
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.01 E-value=0.17 Score=41.50 Aligned_cols=104 Identities=11% Similarity=-0.015 Sum_probs=70.1
Q ss_pred ccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------CCC
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------PET 228 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 228 (277)
..|+.+|||-=.-...+ ..+. .++=||. |.+++.-++.+...+.. ...+..++..|+.+.. +..
T Consensus 91 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~L~~~g~d~ 164 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVT---PTADRREVPIDLRQDWPPALRSAGFDP 164 (297)
T ss_dssp CEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCC---CSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred CeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCC---CCceEEEecccccchHHHHHHhcCCCC
Confidence 45777999865544333 2233 5666664 77887766666543221 1234566777776521 222
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..-=++++-.++.|++.++...+|+.+.....||+.+++.
T Consensus 165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3445677778999999999999999999999999998885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.66 E-value=0.33 Score=35.80 Aligned_cols=94 Identities=13% Similarity=-0.074 Sum_probs=60.2
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCC------C
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF------T 225 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~------~ 225 (277)
.+++.+||=.||| .|.++..+++. +...|+++|.++.-++.+++.-... ++.. +-.+. .
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~------------~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------------CINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE------------EEeCCchhhHHHHHHHH
Confidence 5688899999987 33455555554 5568999999999999998764331 1111 10110 0
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
...+.+|+|+-.-.- . .+++.+...+++||.+++.
T Consensus 94 ~~~~g~D~vid~~G~------~--~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 94 MTDGGVDYSFECIGN------V--KVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HTTSCBSEEEECSCC------H--HHHHHHHHTBCTTTCEEEE
T ss_pred HcCCCCcEeeecCCC------H--HHHHHHHHhhcCCceeEEE
Confidence 113568998865331 2 5778888999999877665
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.17 Score=42.17 Aligned_cols=114 Identities=9% Similarity=0.110 Sum_probs=69.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHhCC----------CCCC---C--CCCCcceeEEEcC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAP----------ENHM---A--PDMHKATNFFCVP 220 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S-~~~l~~a~~~~~~----------~~~~---~--~~~~~~~~~~~~d 220 (277)
+...|+-+|||.=.....+...... +..+|+. |.+++.=++.+.. .... . .....+...+.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~-~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPH-LAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTT-EEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCC-cEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 4568999999988766667655554 5555544 3333322222110 0000 0 0012345667778
Q ss_pred CCCCC---------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 221 LQDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 221 ~~~~~---------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+.+.. +....--++++-.++.|++.++...+++.+.+... +|.+++-|.+.
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~ 234 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIG 234 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCC
Confidence 87642 22233457888889999999999999999988774 56677778873
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.21 E-value=0.074 Score=42.58 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred chHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
-+..++..++... ..++..|||.=||+|..+.+.... ..+.+|+|+++...+.|++++..
T Consensus 192 kP~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 192 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3445566665533 347889999999999999866544 45799999999999999998864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.83 E-value=0.54 Score=32.99 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=54.3
Q ss_pred cEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 160 VALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
+|+=+|+ |.++..+++ .....|+.+|.+++.++.+++.+. ..++.+|..+.. ..-...|
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~------------~~vi~Gd~~~~~~l~~~~i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID------------ALVINGDCTKIKTLEDAGIEDAD 67 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS------------SEEEESCTTSHHHHHHTTTTTCS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh------------hhhccCcccchhhhhhcChhhhh
Confidence 5677776 455544443 233369999999999998876542 456778877642 2224678
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+++... +++..-++....+.+.+.-.+..
T Consensus 68 ~vv~~t~-----~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 68 MYIAVTG-----KEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhcccCC-----cHHHHHHHHHHHHHcCCceEEEE
Confidence 8876432 22333445556667777755543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.61 E-value=0.049 Score=41.46 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=36.4
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
++.+|+-||+|+ |..+...+......|+++|.++.-++..+....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 567999999995 556666666666689999999999999987654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.48 E-value=0.073 Score=39.84 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=63.9
Q ss_pred CCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023787 157 QHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (277)
++.+||--| .|.|..+..+++....+|+++.-|++-.+.+++.-.+. .++....+.... ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~---------vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE---------VISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE---------EEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc---------eEeccchhchhhhcccCCCceE
Confidence 445688766 45778888888876667999999988888887765431 111111111111 123467999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+-.-. . ..+.+..+.|+|+|++++.-..
T Consensus 94 vid~vg-------g--~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 94 AVDPVG-------G--KQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp EEESCC-------T--HHHHHHHTTEEEEEEEEECCCS
T ss_pred EEecCc-------H--HHHHHHHHHhccCceEEEeecc
Confidence 875432 2 5778899999999999986443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=91.66 E-value=0.094 Score=41.94 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=78.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-----------------------------------------CcEEEEeCCHHHHH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-----------------------------------------NEVDLLEPVSHFLD 194 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-----------------------------------------~~v~gvD~S~~~l~ 194 (277)
..+..++|--||+|.+....+-... ..+.|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 4567899999999998776554200 04678899999998
Q ss_pred HHH---HHhCCCCCCCCCCCcceeEEEcCCCCCCC-----CCCceeEEecchhhhc-C------ChhhHHHHHHHHHhcC
Q 023787 195 AAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGH-L------TDDDFVSFFKRAKVGL 259 (277)
Q Consensus 195 ~a~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~fD~Vi~~~~l~~-~------~~~d~~~~l~~~~r~L 259 (277)
.|+ +++...++ ...+.+.+.|+.+... .+...++|++|-.... + ..+.+..++..+.+.+
T Consensus 129 ~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 129 AARRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence 884 56665555 4568888888865431 2356799999875432 2 2234678888899999
Q ss_pred CCCcEEEEEecC
Q 023787 260 KPGGFFVLKENI 271 (277)
Q Consensus 260 kpGG~lii~e~~ 271 (277)
.....++++.+.
T Consensus 204 p~~s~~~it~~~ 215 (249)
T d1o9ga_ 204 PAHAVIAVTDRS 215 (249)
T ss_dssp CTTCEEEEEESS
T ss_pred CCCcEEEEeCch
Confidence 888888888764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.32 E-value=0.48 Score=34.99 Aligned_cols=96 Identities=13% Similarity=-0.126 Sum_probs=58.4
Q ss_pred CCCCccEEEeeccccH-HHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023787 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~-~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (277)
.+++.+||=+|||.+. .+..+++. +..+|+++|.++.-++.+++.-... .+...+..+.. .
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-----------~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE-----------CVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-----------EECGGGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee-----------EEecCCchhHHHHHHHHH
Confidence 5688899999997544 44444444 4458999999999999998864331 01111111110 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
..+.+|+|+-..... ..+..+...+++| |.+++.-
T Consensus 95 ~~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 95 SNGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp TTSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred hcCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence 235789988654422 3556666677776 5666553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.11 Score=39.35 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=58.7
Q ss_pred CccEEEee--ccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C-CCCCcee
Q 023787 158 HLVALDCG--SGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PETGRYD 232 (277)
Q Consensus 158 ~~~VLDiG--cGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD 232 (277)
+.+||-.| .|.|..+..+++... ..|+++..+++-.....+.+... .-+++...++.+. . ..+..+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--------~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--------AAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--------EEEETTSSCHHHHHHHHCTTCEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--------EEeeccchhHHHHHHHHhccCce
Confidence 36799877 578999999998654 46778888877766665554431 1111111111110 0 1124699
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+-.-. . ..+....+.|+|||+++..
T Consensus 103 vv~D~vG-------g--~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 103 VYFDNVG-------G--DISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEESSC-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred EEEecCC-------c--hhHHHHhhhccccccEEEe
Confidence 9974332 1 4678889999999999875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.9 Score=35.56 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCccEEEeecccc---HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG---~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
.++++|--|++.| ..+..|++.+. +|.++|.+++-++...+... .+.++++|+.+.. -.
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 5678999998877 35566666676 59999999998888776653 3567778887642 12
Q ss_pred CCceeEEecch
Q 023787 228 TGRYDVIWVQW 238 (277)
Q Consensus 228 ~~~fD~Vi~~~ 238 (277)
-++.|+++.+-
T Consensus 74 ~g~iDilVnnA 84 (244)
T d1pr9a_ 74 VGPVDLLVNNA 84 (244)
T ss_dssp CCCCCEEEECC
T ss_pred hCCceEEEecc
Confidence 25899988654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.44 Score=35.64 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=61.3
Q ss_pred CccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+.+||-.|+ |.|..+..+++....+|+++.-+++..+.+++.-.+ ..+++...+... ......+|.|+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad---------~vi~~~~~~~~~-~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS---------RVLPRDEFAESR-PLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE---------EEEEGGGSSSCC-SSCCCCEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc---------cccccccHHHHH-HHHhhcCCeeE
Confidence 346776653 477788888887666899999999998888765332 111111111111 22345688875
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+. . ..+....+.|+++|+++..-+.
T Consensus 102 -----D~Vg--g--~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 102 -----DTVG--D--KVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp -----ESSC--H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred -----EEcc--h--HHHHHHHHHhccccceEeeccc
Confidence 2222 2 4688899999999999987544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=88.16 E-value=0.35 Score=41.14 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=39.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
..++..++|||+-.|..+..++... ..+|+++|+++...+..++++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4577899999999999888776542 23799999999999999887654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.17 E-value=0.75 Score=33.75 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=57.6
Q ss_pred ccEEEeeccccH--HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCC-CCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 159 LVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 159 ~~VLDiGcGtG~--~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++|.=||+|.-. ++..|++.+. +|+++|.++.-++..++.-...... .............+..+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 468889998543 3444454555 6999999998888877653210000 000000011111111110 13578888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..- +......++.++...|+++-.+++.
T Consensus 78 i~v-----~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 78 IVV-----PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ECS-----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEE-----chhHHHHHHHHhhhccCCCCEEEEe
Confidence 643 2335668999999999999877654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.59 E-value=1.3 Score=30.66 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEecchhh
Q 023787 166 SGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQWCI 240 (277)
Q Consensus 166 cGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Vi~~~~l 240 (277)
||.|..+..+++..-. .++.+|.++...+.++.. .+.++.+|..+.. ..-.+.+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------------GANFVHGDPTRVSDLEKANVRGARAVIVNLE- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS-
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------------CccccccccCCHHHHHHhhhhcCcEEEEecc-
Confidence 5678888888876433 799999999988877542 3567788876532 22245677765332
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++....++....|.+.|...++..
T Consensus 72 ----~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 72 ----SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp ----SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred ----chhhhHHHHHHHHHHCCCceEEEE
Confidence 223334455566778888776664
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=85.98 E-value=1.4 Score=30.58 Aligned_cols=89 Identities=11% Similarity=-0.039 Sum_probs=47.7
Q ss_pred cEEEeeccccHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
+++=+|+| .++..+++. ....|+++|.+++.++.++... ...+.+|..+.. ..-...|
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~-------------~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA-------------THAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC-------------SEEEECCTTCTTHHHHHTGGGCS
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC-------------CcceeeecccchhhhccCCcccc
Confidence 35556665 444444332 3336999999999988775321 345667776643 1113567
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|++... +.+-...+-...+.+.|...++..
T Consensus 67 ~vi~~~~-----~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 67 YVIVAIG-----ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp EEEECCC-----SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEcC-----chHHhHHHHHHHHHHcCCCcEEee
Confidence 6665433 112223333444445566666553
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=85.61 E-value=0.25 Score=37.31 Aligned_cols=97 Identities=7% Similarity=-0.076 Sum_probs=52.4
Q ss_pred CCCCccEEEeec---cccHHHHHHHHhCCCcEEEEeCC----HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023787 155 NNQHLVALDCGS---GIGRITKNLLIRYFNEVDLLEPV----SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (277)
Q Consensus 155 ~~~~~~VLDiGc---GtG~~s~~l~~~~~~~v~gvD~S----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (277)
..++.+||=+.+ |.|..+..+++....+|+++--+ ++..+.+++.-.+ ..+.....+..++.
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---------~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---------QVITEDQNNSREFGPT 96 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---------EEEEHHHHHCGGGHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---------EEEeccccchhHHHHH
Confidence 456677877732 35677777777655567776323 3334444443222 11111111222110
Q ss_pred ------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 ------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+.+|+|+-+ +. . ..+....+.|+|||+++..-
T Consensus 97 v~~~~~~~g~~vdvv~D~-----vg--~--~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNC-----VG--G--KSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHHTCCEEEEEES-----SC--H--HHHHHHHHTSCTTCEEEECC
T ss_pred HHHHHhhccCCceEEEEC-----CC--c--chhhhhhhhhcCCcEEEEEC
Confidence 012468988843 22 1 35567789999999998753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.05 E-value=2.6 Score=32.69 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
+++++|--|++.|. .+..|++.++ +|..+|.+++-++...+... .+.++.+|+.+.. -.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 46788888887663 4555666666 59999999988877766643 3567788887642 11
Q ss_pred CCceeEEecch------hhhcCChhhHHH
Q 023787 228 TGRYDVIWVQW------CIGHLTDDDFVS 250 (277)
Q Consensus 228 ~~~fD~Vi~~~------~l~~~~~~d~~~ 250 (277)
-++.|+++.+- .+..++.+++..
T Consensus 72 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~ 100 (242)
T d1cyda_ 72 IGPVDLLVNNAALVIMQPFLEVTKEAFDR 100 (242)
T ss_dssp CCCCSEEEECCCCCCCBCGGGCCHHHHHH
T ss_pred cCCCeEEEECCccccchhHHHHHHHHHHH
Confidence 26789988553 234445555443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.97 E-value=0.96 Score=35.61 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCccEEEeecccc---HHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDL-LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG---~~s~~l~~~~~~~v~g-vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
.++++|-.|++.| ..+..|++.++. |+. .+-+...++.+.+.+... ..++.++.+|+.+..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~D~~~~~~v~~~~~ 76 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKL-------GAQGVAIQADISKPSEVVALFD 76 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHc-------CCCceEecCCCCCHHHHHHHHH
Confidence 5678898887766 466666666775 665 567777778777776553 245778889987632
Q ss_pred ---CCCCceeEEecchhhhcC------ChhhH-----------HHHHHHHHhcCCCCcEEEEE
Q 023787 226 ---PETGRYDVIWVQWCIGHL------TDDDF-----------VSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l~~~------~~~d~-----------~~~l~~~~r~LkpGG~lii~ 268 (277)
..-+..|+++.+-.+.+. +.+++ -.+.+.+...|+.+|.+++.
T Consensus 77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 112579999866544332 22222 23455666667777766554
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=1.3 Score=34.89 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=53.6
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
+++.+|--|++.|. ++..|++.+. +|++++.++.-++.+.+.+...+. ..++.++.+|+.+..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGY-----PGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEEccCCCHHHHHHHHHH
Confidence 45789999988774 4555666666 599999999998888777655332 246778889998642
Q ss_pred --CCCCceeEEecch
Q 023787 226 --PETGRYDVIWVQW 238 (277)
Q Consensus 226 --~~~~~fD~Vi~~~ 238 (277)
-.-++.|++|.+-
T Consensus 83 ~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 83 IRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHCCCSEEEECC
T ss_pred HHHhcCCCCEEEecc
Confidence 0125789888554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.10 E-value=2.1 Score=33.69 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=65.4
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCC-HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
+++++|--|++.|. .+..|++.+.. |+.+|.+ ++.++...+.+... ..++.++.+|+.+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKN-------GSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHT-------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhh-------CCceeeEeCCCCCHHHHHHHHH
Confidence 46788988888774 56666666664 9998876 55666665554432 245778888887632
Q ss_pred ---CCCCceeEEecchhh------hcCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 226 ---PETGRYDVIWVQWCI------GHLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l------~~~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
-..+..|+++.+... +..+.+++.. +.+.+...|+.+|.+++.
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 012578988855332 2333333333 356677778887777665
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=1.3 Score=34.97 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=66.9
Q ss_pred CccE-EEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 158 HLVA-LDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 158 ~~~V-LDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
++|| |-=|++.|. ++..|++.+...|+.++.+++-++.+.+.+... ..++.++.+|+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dvs~~~sv~~~~~~ 74 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-------GLSPRFHQLDIDDLQSIRALRDF 74 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEEecCCHHHHHHHHHH
Confidence 4566 444555443 344455554457999999999998888777543 245788899998753
Q ss_pred --CCCCceeEEecchhhhcC------ChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023787 226 --PETGRYDVIWVQWCIGHL------TDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l~~~------~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (277)
-.-++.|++|.+-.+.+. +++++. .+.+.+...|+++|.++..-
T Consensus 75 ~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 75 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 012589999977544321 112222 34666777888999887653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.94 E-value=2.2 Score=33.56 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
+++.+|--|++.|. .+..|++.+. +|+.+|.+++-++.+.+.+.. ...+.++.+|+.+.. +
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~--------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS--------PDVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC--------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC--------CCceEEEEccCCCHHHHHHHHHH
Confidence 46788888887764 3455565666 599999999999988888765 234778888987642 0
Q ss_pred ---CCCceeEEecch
Q 023787 227 ---ETGRYDVIWVQW 238 (277)
Q Consensus 227 ---~~~~fD~Vi~~~ 238 (277)
.-++.|+++.+-
T Consensus 76 ~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 76 TIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCcceecccc
Confidence 115789988554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=81.82 E-value=5.6 Score=28.06 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred cEEEeeccccH--HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGtG~--~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|.=||||.=. +...|++.++.++++.|.+++-++...++.. +. ...+.+.. ...|+|+.+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~------------~~-~~~~~~~v----~~~Div~la 64 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG------------VE-TSATLPEL----HSDDVLILA 64 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC------------CE-EESSCCCC----CTTSEEEEC
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcc------------cc-cccccccc----cccceEEEe
Confidence 56778887532 3344566665689999999988887776542 11 12233332 246888854
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.+ +..+.+-+++.+.++++
T Consensus 65 -----vkP~~----~~~v~~~l~~~~~~viS 86 (152)
T d1yqga2 65 -----VKPQD----MEAACKNIRTNGALVLS 86 (152)
T ss_dssp -----SCHHH----HHHHHTTCCCTTCEEEE
T ss_pred -----cCHHH----HHHhHHHHhhcccEEee
Confidence 22233 33444556677777765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.09 E-value=0.29 Score=38.84 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=35.2
Q ss_pred eEEEcCCCCC--CCCCCceeEEecchhhhc--------CC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 215 NFFCVPLQDF--TPETGRYDVIWVQWCIGH--------LT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 215 ~~~~~d~~~~--~~~~~~fD~Vi~~~~l~~--------~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.+|..+. .++++++|+|+..-...- .. .+.....+.++.|+|||||.+++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 3455554332 245689999997654210 00 113567889999999999999885
|