Citrus Sinensis ID: 023832

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
cccccccHHHHHHHHHHHHHHHHcccccccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEccccccccccccccccccccEEEccccEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEEccccc
ccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEccccEc
mnamdlrrGITMAVDAVVTNLKSRARMISTSEEIAQVgtisangeREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVegmkldrgyispyfitnqknqkceledpliLVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCaikapgfgenrkaNMQDLAVLTGGDLITEELGMDLEKVNLDMLGTckkvtiskddtvildgagdkkSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
mnamdlrrgitMAVDAVVTNLKSRARMistseeiaqvgtisangeREIGELIAKAMEKVGKEGvitihdgktlynELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIkapgfgenrkanMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCkkvtiskddtvildgagdkksiEERCEQIRSaienstsdydkEKLQERLAklsggvavLKVCCGFI
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
********GITMAVDAVVTNLKSRARMI****EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG*********************************LAKLSGGVAVLKVCCGF*
MNAMDLRRGITMAVDAVVTNLK***********IAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
*NAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGFI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDxxxxxxxxxxxxxxxxxxxxxYDKEKLQERLAKLSGGVAVLKVCCGFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q05046 575 Chaperonin CPN60-2, mitoc N/A no 0.981 0.471 0.915 1e-142
P29197 577 Chaperonin CPN60, mitocho yes no 0.981 0.469 0.896 1e-140
Q05045 575 Chaperonin CPN60-1, mitoc N/A no 0.981 0.471 0.896 1e-139
P29185 577 Chaperonin CPN60-1, mitoc N/A no 0.981 0.469 0.878 1e-137
Q43298 576 Chaperonin CPN60-2, mitoc N/A no 0.981 0.470 0.874 1e-137
Q8L7B5 585 Chaperonin CPN60-like 1, no no 0.981 0.463 0.841 1e-132
P35480 587 Chaperonin CPN60, mitocho N/A no 0.978 0.459 0.819 1e-124
Q93ZM7 572 Chaperonin CPN60-like 2, no no 0.981 0.473 0.723 1e-111
P35471 542 60 kDa chaperonin 5 OS=Rh yes no 0.981 0.5 0.653 1e-100
Q2RWV4 548 60 kDa chaperonin 2 OS=Rh yes no 0.981 0.494 0.638 1e-100
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/271 (91%), Positives = 265/271 (97%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MNAMDLRRGI+MAVD+VVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG
Sbjct: 142 MNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 201

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           KEGVITI DGKTL+NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEKKIS++
Sbjct: 202 KEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSI 261

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
            +VV+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENRKA + 
Sbjct: 262 NSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLH 321

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           DLAVLTGG LITEELGM+LEKV+LDMLG+CKK+TISKDDTVILDGAGDKKSIEERCEQIR
Sbjct: 322 DLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEERCEQIR 381

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
           SAIE STSDYDKEKLQERLAKLSGGVAVLK+
Sbjct: 382 SAIELSTSDYDKEKLQERLAKLSGGVAVLKI 412
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Cucurbita maxima (taxid: 3661)
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|P35471|CH605_RHIME 60 kDa chaperonin 5 OS=Rhizobium meliloti (strain 1021) GN=groL5 PE=2 SV=2 Back     alignment and function description
>sp|Q2RWV4|CH602_RHORT 60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
356534856 575 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.471 0.918 1e-141
356575182 575 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.471 0.915 1e-141
461736 575 RecName: Full=Chaperonin CPN60-2, mitoch 0.981 0.471 0.915 1e-140
356576411 575 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.471 0.911 1e-140
255554262 574 chaperonin-60kD, ch60, putative [Ricinus 0.981 0.472 0.911 1e-140
357442731 574 Chaperonin CPN60-like protein [Medicago 0.981 0.472 0.907 1e-140
449458874 575 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.471 0.904 1e-139
225433375 575 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.471 0.915 1e-139
356535474 577 PREDICTED: chaperonin CPN60-2, mitochond 0.981 0.469 0.904 1e-139
297835484 577 hypothetical protein ARALYDRAFT_898985 [ 0.981 0.469 0.900 1e-139
>gi|356534856|ref|XP_003535967.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/271 (91%), Positives = 265/271 (97%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MNAMDLRRGI+MAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG
Sbjct: 142 MNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 201

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           KEGVITI DGKTLYNELEVVEGMKLDRGYISPYFITN KNQKCELEDPLIL+HEKKIS++
Sbjct: 202 KEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNDKNQKCELEDPLILIHEKKISSI 261

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
            A+V+VLELALKRQR LLI+AEDVES+ALATLILNKLRAGIKVCAIKAPGFGENRKAN+Q
Sbjct: 262 NAIVKVLELALKRQRSLLIIAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQ 321

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           DLAVLTGG LITEELG+ LEKV+LDMLGTCKK+T+SKDDTVILDGAGDKK++EERCEQIR
Sbjct: 322 DLAVLTGGALITEELGLKLEKVDLDMLGTCKKITVSKDDTVILDGAGDKKALEERCEQIR 381

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
           SAIENSTSDYDKEKLQERLAKLSGGVAVLK+
Sbjct: 382 SAIENSTSDYDKEKLQERLAKLSGGVAVLKI 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356575182|ref|XP_003555721.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|461736|sp|Q05046.1|CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|478786|pir||S29316 chaperonin 60 - cucurbit gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|356576411|ref|XP_003556325.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357442731|ref|XP_003591643.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|92882357|gb|ABE86688.1| GroEL-like chaperone, ATPase [Medicago truncatula] gi|355480691|gb|AES61894.1| Chaperonin CPN60-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449458874|ref|XP_004147171.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] gi|449498579|ref|XP_004160576.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535474|ref|XP_003536270.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297835484|ref|XP_002885624.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] gi|297331464|gb|EFH61883.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2076081 577 HSP60 "heat shock protein 60" 0.981 0.469 0.896 8.9e-125
TAIR|locus:2046590 585 HSP60-2 "heat shock protein 60 0.981 0.463 0.841 5.4e-118
TAIR|locus:2087959 572 HSP60-3A "heat shock protein 6 0.981 0.473 0.723 3.4e-100
TIGR_CMR|SPO_0887 546 SPO_0887 "chaperonin, 60 kDa" 0.981 0.496 0.612 9.9e-87
TIGR_CMR|CBU_1718 552 CBU_1718 "chaperonin, 60 kDa" 0.981 0.490 0.612 2.4e-85
CGD|CAL0001744 566 HSP60 [Candida albicans (taxid 0.978 0.477 0.612 3.1e-83
UNIPROTKB|O74261 566 HSP60 "Heat shock protein 60, 0.978 0.477 0.612 3.1e-83
UNIPROTKB|G4NAR5 589 MGG_03165 "Heat shock protein 0.978 0.458 0.594 2.8e-82
SGD|S000004249 572 HSP60 "Tetradecameric mitochon 0.978 0.472 0.590 2.8e-82
GENEDB_PFALCIPARUM|PF10_0153 580 PF10_0153 "hsp60" [Plasmodium 0.981 0.467 0.580 1.5e-81
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 243/271 (89%), Positives = 263/271 (97%)

Query:     1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
             MNAMDLRRGI+MAVDAVVTNLKS+ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG
Sbjct:   141 MNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 200

Query:    61 KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
             KEGVITI DGKTL+NELEVVEGMKLDRGY SPYFITNQK QKCEL+DPLIL+HEKKIS++
Sbjct:   201 KEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSI 260

Query:   121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
              ++V+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENRKAN+Q
Sbjct:   261 NSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQ 320

Query:   181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
             DLA LTGG++IT+ELGM+LEKV+L MLGTCKKVT+SKDDTVILDGAGDKK IEERCEQIR
Sbjct:   321 DLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIR 380

Query:   241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
             SAIE STSDYDKEKLQERLAKLSGGVAVLK+
Sbjct:   381 SAIELSTSDYDKEKLQERLAKLSGGVAVLKI 411
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
CGD|CAL0001744 HSP60 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|O74261 HSP60 "Heat shock protein 60, mitochondrial" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000004249 HSP60 "Tetradecameric mitochondrial chaperonin" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q05046CH62_CUCMANo assigned EC number0.91510.98180.4713N/Ano
O34198CH60_RICRINo assigned EC number0.63700.97820.6617yesno
P29197CH60A_ARATHNo assigned EC number0.89660.98180.4696yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 1e-160
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-157
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-152
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-140
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 1e-136
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-133
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-128
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-126
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-105
CHL00093 529 CHL00093, groEL, chaperonin GroEL 1e-100
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 5e-80
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 9e-69
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 3e-39
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-28
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 4e-27
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  454 bits (1171), Expect = e-160
 Identities = 175/271 (64%), Positives = 220/271 (81%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
            N MDL+RGI  AV+AVV  LK  ++ + T EEIAQV TISANG+ EIGELIA+AMEKVG
Sbjct: 108 ANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVG 167

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           K+GVIT+ +GKTL  ELEVVEGM+ DRGY+SPYF+T+ +  + ELE+P IL+ +KKIS++
Sbjct: 168 KDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI 227

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             ++ +LEL  K  RPLLI+AEDVE EALATL++NKLR G+KVCA+KAPGFG+ RKA ++
Sbjct: 228 QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+EELG+ LE V L+ LG  KKV ++KDDT I+ GAGDK +I+ R  QIR
Sbjct: 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIR 347

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
             IE +TSDYDKEKLQERLAKLSGGVAV+KV
Sbjct: 348 KQIEETTSDYDKEKLQERLAKLSGGVAVIKV 378

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 99.97
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 99.97
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 99.97
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 99.97
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 99.97
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 99.97
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 99.96
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 99.96
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 99.96
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 99.96
cd00309464 chaperonin_type_I_II chaperonin families, type I a 99.96
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 99.96
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 99.96
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 99.95
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 99.94
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 99.94
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 99.94
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 99.94
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 99.93
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 99.93
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.91
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 99.84
KOG0358 534 consensus Chaperonin complex component, TCP-1 delt 99.83
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 99.82
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 99.75
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.74
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 99.74
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 99.48
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 99.35
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 99.31
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 98.27
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.85
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 94.25
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 80.34
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-76  Score=566.24  Aligned_cols=275  Identities=59%  Similarity=0.932  Sum_probs=272.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832            1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV   80 (276)
Q Consensus         1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~   80 (276)
                      +||++++||+++|++.+++.|+++|+||+++++|.|||++|+|+|.++|++|++||++||++|+|+|++|++++|+++++
T Consensus       124 ~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~  203 (550)
T KOG0356|consen  124 ANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVI  203 (550)
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832           81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG  160 (276)
Q Consensus        81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~  160 (276)
                      |||+||+||+||||+|+++++++||+||++|++++||+++++|+|+||...+..+|||||||||++|||++|++|+++++
T Consensus       204 eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~g  283 (550)
T KOG0356|consen  204 EGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGG  283 (550)
T ss_pred             hcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCC-ccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHH
Q 023832          161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG-MDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI  239 (276)
Q Consensus       161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g-~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l  239 (276)
                      +||||||+|+|||.|++.|+|||++|||++++++.+ ++|+++++++||.|.++++++++|+++.|.+++++++.||+|+
T Consensus       284 lqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqi  363 (550)
T KOG0356|consen  284 LQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQI  363 (550)
T ss_pred             eeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832          240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF  275 (276)
Q Consensus       240 ~~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~  275 (276)
                      +..++.++++|++++|+||++||+||+|+|+|||.+
T Consensus       364 k~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~s  399 (550)
T KOG0356|consen  364 KEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHS  399 (550)
T ss_pred             HHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcc
Confidence            999999999999999999999999999999999976

>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 5e-96
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 5e-88
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 6e-88
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-88
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 7e-88
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 7e-88
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 8e-88
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 8e-88
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 2e-87
1ss8_A 524 Groel Length = 524 3e-87
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 3e-87
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 3e-87
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-86
1oel_A 547 Conformational Variability In The Refined Structure 1e-86
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-86
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 6e-77
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 7e-77
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-75
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 2e-62
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-60
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-60
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 3e-60
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 6e-58
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 4e-52
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 2e-46
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 2e-44
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 3e-40
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  347 bits (889), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 167/271 (61%), Positives = 216/271 (79%)
Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MN MDL+RGI +A   VV  +KS AR ++ S E+AQVGTISANGE  IG+ IA+AM++VG
Sbjct: 111 MNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVG 170
Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
            EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEKK+S+L
Sbjct: 171 NEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSL 230
Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ RKA +Q
Sbjct: 231 QPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQ 290
Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR
Sbjct: 291 DIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 350
Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
             IE +TSDYD+EKLQER+AKL+GGVAV++V
Sbjct: 351 QQIEETTSDYDREKLQERVAKLAGGVAVIRV 381
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 1e-157
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 1e-156
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-153
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-153
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 1e-112
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 1e-110
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 9e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  448 bits (1155), Expect = e-157
 Identities = 167/271 (61%), Positives = 216/271 (79%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MN MDL+RGI +A   VV  +KS AR ++ S E+AQVGTISANGE  IG+ IA+AM++VG
Sbjct: 111 MNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVG 170

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
            EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEKK+S+L
Sbjct: 171 NEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSL 230

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ RKA +Q
Sbjct: 231 QPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQ 290

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR
Sbjct: 291 DIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 350

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKV 271
             IE +TSDYD+EKLQER+AKL+GGVAV++V
Sbjct: 351 QQIEETTSDYDREKLQERVAKLAGGVAVIRV 381
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.8
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.76
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
Probab=100.00  E-value=1.1e-79  Score=528.35  Aligned_cols=194  Identities=51%  Similarity=0.856  Sum_probs=191.9

Q ss_pred             eEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHh
Q 023832           76 ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILN  155 (276)
Q Consensus        76 ~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n  155 (276)
                      +++++|||+|||||+||||+||+++|+++|+|||||++|+||+++++|+|+||++.++|+|||||||||++|||++|+.|
T Consensus         1 elevvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvN   80 (194)
T 3m6c_A            1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVN   80 (194)
T ss_dssp             CCCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHH
T ss_pred             CeEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhh
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHH
Q 023832          156 KLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER  235 (276)
Q Consensus       156 ~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r  235 (276)
                      |+||+++|||||||||||+||++|+|||++|||+||++++|++|+++++++||+|++|+|+||+|+|++|+|++++|++|
T Consensus        81 klrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~R  160 (194)
T 3m6c_A           81 AIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANR  160 (194)
T ss_dssp             HHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHH
T ss_pred             hccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhcCCeEEE
Q 023832          236 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVL  269 (276)
Q Consensus       236 ~~~l~~~~~~~~s~~~~~~L~eRla~L~ggvavi  269 (276)
                      |+|||+|++.++|+||||||+||||||+||||||
T Consensus       161 v~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI  194 (194)
T 3m6c_A          161 AKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI  194 (194)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence            9999999999999999999999999999999986
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-93
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 1e-90
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 1e-88
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 7e-71
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 3e-32
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 2e-26
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 4e-23
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-21
d1kp8a1 252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-09
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-20
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 9e-14
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-11
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-11
d1ioka1 252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 7e-10
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  272 bits (696), Expect = 2e-93
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 76  ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 135
                EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 136 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195
           PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 196 GMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 255
           GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKL
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182

Query: 256 QERLAKLSGGV 266
           QER+AKL+GGV
Sbjct: 183 QERVAKLAGGV 193
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.94
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.89
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.89
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.87
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.72
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.71
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.71
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.71
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.48
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.21
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.16
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 98.95
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.13
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.04
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 97.99
d1ioka1 252 GroEL, E domain {Paracoccus denitrificans [TaxId: 97.49
d1kp8a1 252 GroEL, E domain {Escherichia coli [TaxId: 562]} 97.18
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 96.42
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 96.16
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 94.1
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-66  Score=450.97  Aligned_cols=190  Identities=57%  Similarity=0.912  Sum_probs=187.9

Q ss_pred             EEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhc
Q 023832           77 LEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNK  156 (276)
Q Consensus        77 l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~  156 (276)
                      ++++|||+||+||+||||+||+++|+++|+||+||++|++|+++++|+|+||++.+.++||||||+||+++||++|+.|+
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~   83 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT   83 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHH
Q 023832          157 LRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERC  236 (276)
Q Consensus       157 ~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~  236 (276)
                      ++|+++|||||+|+||++|++.|+|||++|||+||+++.|++++++++++||+|++|+++++.|+|++|.|++++|++|+
T Consensus        84 ~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri  163 (193)
T d1kida_          84 MRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV  163 (193)
T ss_dssp             HTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred             hccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhcCCe
Q 023832          237 EQIRSAIENSTSDYDKEKLQERLAKLSGGV  266 (276)
Q Consensus       237 ~~l~~~~~~~~s~~~~~~L~eRla~L~ggv  266 (276)
                      ++|+.++++++++|||++|+||||||+|||
T Consensus       164 ~~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         164 AQIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999997
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure