Citrus Sinensis ID: 023841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MKMEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Secondary Structure (PSIPRED)
cccHHHHcccHHHHHccccccHHHHHHHHccccccccccccccccHHHHHHHHcccccccEEEccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHHcHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHcccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccHccccHHHHHHHHHcccccccHHHHHHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccHHEEEEccccccccHHHHHHHHHHccHHHHHHcEEEccccHHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccHHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcHHHHHEEEHHcHHHHHHHHHHHcccHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKMEEEKVKAAEEEetwsketvPKVIRIMSTRLSQRDIISLLLVspwlhrtlvsypslwLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKclgslqdleslnlngcqkisdKGIEIIsstcpelkvfSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQinssnggdhLAFAYIIETntykhgkekHIIETIKTGQQLL
Flexible Loop (DISEMBL)
mkmeeekvkaaeeeetwsketvpkvIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNtykhgkekHIIETIKTGQQLL
Low Complexity Region (SEG)
mkmeeekvkaaeeeeTWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Disordered region (IsUnstruct)
*********************VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI*******
Disordered Region (DISOPRED)
******************KETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQL*
Disordered Region (DISEMBL)
******************KETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Disordered Region (DISPRO)
*****E*****EEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q8LB33	353	F-box protein At3g58530 O	yes	no	0.673	0.526	0.677	1e-72
Q6NW95	296	F-box/LRR-repeat protein	yes	no	0.528	0.493	0.276	1e-11
Q9LPL4	360	F-box protein SKP2A OS=Ar	no	no	0.659	0.505	0.285	9e-11
P34284	466	Uncharacterized F-box/LRR	yes	no	0.380	0.225	0.314	5e-10
A6H779	423	F-box/LRR-repeat protein	yes	no	0.467	0.304	0.315	1e-09
Q9UJT9	491	F-box/LRR-repeat protein	no	no	0.474	0.266	0.294	4e-09
Q5BJ29	491	F-box/LRR-repeat protein	yes	no	0.474	0.266	0.287	6e-09
B5X441	292	F-box/LRR-repeat protein	N/A	no	0.510	0.482	0.239	7e-09
Q0P4D1	249	Protein AMN1 homolog OS=D	no	no	0.253	0.281	0.365	7e-09
Q8BH16	423	F-box/LRR-repeat protein	no	no	0.467	0.304	0.293	1e-08

>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 161/192 (83%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 YVNMILLGLFYI 213
            V +   GL  +
Sbjct: 199 CVKITDDGLLQV 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NW95|FXL15_DANRE F-box/LRR-repeat protein 15 OS=Danio rerio GN=fbxl15 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 62  IDLREMNNAGNRLVAA--LSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD---- 115
           +DLR       R + A  LS PR +H     L  A      H E + +  L SL D    
Sbjct: 116 VDLRGCAQLSRRALVAVSLSCPRLQH-----LSLA------HCEWVDSLALRSLADHCPM 164

Query: 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175
           L SL+L  C+++ D  +  ++  CPEL+  S+  N  +TD  ++ + K C+ +  L+L+G
Sbjct: 165 LRSLDLTACRQLKDPAVCYLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTG 224

Query: 176 CKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218
           C  + +++++ +A+   +L+SL +    N+    L  +   N+
Sbjct: 225 CLRVRNEAIRTLAEYCPKLQSLKVNHCHNVTESSLGVLRRRNV 267

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway (By similarity). Required for dorsal/ventral pattern formation.

Danio rerio (taxid: 7955)

>sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 21/203 (10%)

Query: 1   MKMEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60
           MKME   +K       W    V  ++RI+S    +  I++  + + W  R  +S+    L
Sbjct: 18  MKMEGISIK------EWKDIPVELLMRILSLVDDRNVIVASGVCTGW--RDAISFGLTRL 69

Query: 61  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQD---IEDRHLELLKTKCLGSLQDLE 117
              L   NN  N LV +L +P++  ++ +NL   QD   +ED  +E +   C     +L+
Sbjct: 70  --RLSWCNNNMNSLVLSL-VPKFVKLQTLNLR--QDKPQLEDNAVEAIANHC----HELQ 120

Query: 118 SLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC- 176
            L+L+   KI+D+ +  ++  CP+L   ++      +D  I +L + C+ +  LNL GC 
Sbjct: 121 ELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCV 180

Query: 177 KNLLDKSLQLIADNYQELESLNL 199
           K + D +L+ I +N  +++SLNL
Sbjct: 181 KAVTDNALEAIGNNCNQMQSLNL 203

Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia.

Arabidopsis thaliana (taxid: 3702)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 93  FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 152
           F +D++   +E L  +C G L++L   +L GC+ + D  +   +S CP L+  S+Y   R
Sbjct: 105 FQRDVKTAVVENLARRCGGFLKEL---SLKGCENVHDSALRTFTSRCPNLEHLSLYRCKR 161

Query: 153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT 200
           VTD   ++L + C  +  LNL  C ++ D++++ I D    L  LN++
Sbjct: 162 VTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNIS 209

Caenorhabditis elegans (taxid: 6239)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
           RH+  +NL +   I    +E L   C G    L +L L GC ++ D+ ++ I + C EL 
Sbjct: 156 RHLEYLNLSWCDQITKDGVEALVRGCRG----LRALLLRGCTQLEDEALKHIQNYCHELV 211

Query: 144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203
             ++    RVTD G+  L + C  +  L LSGC +L D SL  +A N   L+ L   R  
Sbjct: 212 SLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCS 271

Query: 204 NMILLGLFYIWSN 216
           ++   G   +  N
Sbjct: 272 HLTDAGFTLLARN 284

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 8/139 (5%)

Query: 61  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 120
           V D R +++ G R +A L   R R++   +     D+  R++    +K       L  LN
Sbjct: 331 VSDCRFVSDFGLREIAKLE-SRLRYLSIAHCGRVTDVGIRYVAKYCSK-------LRYLN 382

Query: 121 LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 180
             GC+ I+D G+E ++  C +LK   I     V+D G++ L  NC ++  L+L  C+++ 
Sbjct: 383 ARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESIT 442

Query: 181 DKSLQLIADNYQELESLNL 199
            + LQ++A N  +L++LN+
Sbjct: 443 GQGLQIVAANCFDLQTLNV 461

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Homo sapiens (taxid: 9606)

>sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 61  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 120
           V D R +++ G R +A L       +R +++     I D  +  +   C      L  LN
Sbjct: 331 VSDCRFVSDFGLREIAKLE----SRLRYLSIAHCGRITDVGIRYVAKYC----SKLRYLN 382

Query: 121 LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 180
             GC+ I+D G+E ++  C +LK   I     V+D G++ L  NC ++  L+L  C+++ 
Sbjct: 383 ARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESIT 442

Query: 181 DKSLQLIADNYQELESLNL 199
            + LQ++A N  +L+ LN+
Sbjct: 443 GQGLQIVAANCFDLQMLNV 461

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Mus musculus (taxid: 10090)

>sp|B5X441|FXL15_SALSA F-box/LRR-repeat protein 15 OS=Salmo salar GN=fbxl15 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 78/146 (53%), Gaps = 5/146 (3%)

Query: 60  LVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 119
           L +D+R  +      + A+S+    H++ + L   + ++   +  L   C G    L S+
Sbjct: 110 LRVDMRGCDRLTRHSLVAVSL-SCTHLQYLGLAHCEWVDSLSIRSLADHCGG----LRSI 164

Query: 120 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 179
           +L  C+++ D+ I  +S  C +++  S+  N  +TD+ ++ + KNC+ +  L+L+GC  +
Sbjct: 165 DLTACRQLKDEAICYLSKKCLKMRSLSVAVNANITDVSVEEVAKNCRELEQLDLTGCLRV 224

Query: 180 LDKSLQLIADNYQELESLNLTRYVNM 205
            + S++ +A+   +L+SL +    N+
Sbjct: 225 RNDSIRTVAEYCPKLQSLKVNHCHNV 250

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway). Required for dorsal/ventral pattern formation (By similarity.

Salmo salar (taxid: 8030)

>sp|Q0P4D1|AMN1_DANRE Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%)

Query: 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175
           L ++ L GC +I+ +G+E+++  CP L+V  +     VTD GIQ L ++CK +  ++L G
Sbjct: 82  LRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVTDSGIQALARHCKCLEVISLRG 141

Query: 176 CKNLLDKSLQLIADNYQELESL 197
           C  L DK+L  +  N + L S+
Sbjct: 142 CSALSDKALLELGGNCKMLHSI 163

Danio rerio (taxid: 7955)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
           R++  +NL +   I    +E L   C G    L++L L GC ++ D+ ++ I + C EL 
Sbjct: 156 RNLEYLNLSWCDQITKEGIEALVRGCRG----LKALLLRGCTQLEDEALKHIQNHCHELV 211

Query: 144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203
             ++    R+TD G+  + + C  +  L LSGC NL D SL  +  N   L+ L   R  
Sbjct: 212 SLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCS 271

Query: 204 NMILLGLFYIWSN 216
           ++   G   +  N
Sbjct: 272 HLTDAGFTLLARN 284

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
297739793	350	unnamed protein product [Vitis vinifera]	0.800	0.631	0.694	5e-86
225441543	353	PREDICTED: F-box protein At3g58530 [Viti	0.800	0.626	0.694	8e-86
147789108	349	hypothetical protein VITISV_044261 [Viti	0.75	0.593	0.740	1e-85
255580692	351	ubiquitin-protein ligase, putative [Rici	0.855	0.672	0.652	2e-85
224088164	341	predicted protein [Populus trichocarpa]	0.663	0.536	0.706	2e-83
297817168	353	hypothetical protein ARALYDRAFT_486305 [	0.760	0.594	0.672	1e-74
356530677	353	PREDICTED: F-box protein At3g58530-like	0.807	0.631	0.572	3e-71
18410977	353	F-box protein [Arabidopsis thaliana] gi|	0.673	0.526	0.677	6e-71
15450960	353	putative protein [Arabidopsis thaliana]	0.673	0.526	0.677	7e-71
388498858	357	unknown [Lotus japonicus]	0.807	0.624	0.568	2e-67

>gi|297739793|emb|CBI29975.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 190/229 (82%), Gaps = 8/229 (3%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRYVNM-------ILLGLFYIWSNNILLMSEF 224
           SLQLIADNY +LE LNLTR + +       ILL    + S N+  +S F
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441543|ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vinifera]

 Score =  322 bits (826), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 190/229 (82%), Gaps = 8/229 (3%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRYVNM-------ILLGLFYIWSNNILLMSEF 224
           SLQLIADNY +LE LNLTR + +       ILL    + S N+  +S F
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789108|emb|CAN73494.1| hypothetical protein VITISV_044261 [Vitis vinifera]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 181/208 (87%), Gaps = 1/208 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 XCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRYVNMILLGL 210
           SLQLIADNY +LE LNLTR   +   GL
Sbjct: 180 SLQLIADNYPDLELLNLTRCXKLTDGGL 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580692|ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223529238|gb|EEF31211.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/239 (65%), Positives = 194/239 (81%), Gaps = 3/239 (1%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           ME +KV   EEE+TWS+ET+PKV++I+ST +SQ+D+ISLLLVSPWLH +L+SYPSLWL +
Sbjct: 1   MERKKV---EEEQTWSRETIPKVMKIVSTTISQKDVISLLLVSPWLHHSLISYPSLWLAL 57

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D REMN AG+RL++ALS+PRYRHV++INLEFAQDIEDRHL+++++K   SLQ+LESLNLN
Sbjct: 58  DFREMNKAGDRLISALSLPRYRHVKQINLEFAQDIEDRHLQVIQSKASSSLQNLESLNLN 117

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
           GCQKISDKGIE I+S CP LKVFSIYWNVRVTD+GI+ LV+NCKHI+DLNLSGCKN+ DK
Sbjct: 118 GCQKISDKGIEAITSACPNLKVFSIYWNVRVTDVGIKQLVENCKHIVDLNLSGCKNISDK 177

Query: 183 SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241
           SLQL+AD YQ++E L+LTR + +   GL  I S    L S  +Y    F      N SN
Sbjct: 178 SLQLVADLYQDIELLDLTRCIKLTDDGLQQILSKCSSLKSLNLYALSTFTDKAYRNISN 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088164|ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|222854326|gb|EEE91873.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/211 (70%), Positives = 180/211 (85%)

Query: 16  TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLV 75
           TW+ ET+PKV++I+ST+L QRD+ISLLLVSPWL+RTL S+P LW+ +D REMN AG+RL+
Sbjct: 1   TWNTETIPKVMKIVSTKLPQRDLISLLLVSPWLYRTLTSFPPLWMALDFREMNKAGDRLI 60

Query: 76  AALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135
           AA S+PRY+HV+EINLEFAQDIED HLE+L++KC  SLQ LESLNLNGCQKISDKGIE I
Sbjct: 61  AATSLPRYQHVKEINLEFAQDIEDEHLEVLQSKCFVSLQKLESLNLNGCQKISDKGIEAI 120

Query: 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
           +STC +LKVFSIYWNVRVTDIGI+H+V+NCK I+DLNLSGCKN+ DK+LQLIA+NYQELE
Sbjct: 121 TSTCSKLKVFSIYWNVRVTDIGIKHVVENCKQIVDLNLSGCKNISDKALQLIAENYQELE 180

Query: 196 SLNLTRYVNMILLGLFYIWSNNILLMSEFIY 226
           SLNLTR + +   GL  I S    L S  +Y
Sbjct: 181 SLNLTRCIKLTDGGLQQILSKCSSLQSLNLY 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817168|ref|XP_002876467.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata] gi|297322305|gb|EFH52726.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 175/211 (82%), Gaps = 1/211 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           ME +KV   EEEE+W +E V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I
Sbjct: 1   MEAKKV-TEEEEESWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLNI 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           DLREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+K +   +L  LE LNLN
Sbjct: 60  DLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKAEYPDALLSLECLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
           GCQKISD GIE I+S CP+LKVFSIYWNVRVTD GI+HLVKNC+HIIDLNLSGCK+L DK
Sbjct: 120 GCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRHLVKNCRHIIDLNLSGCKSLTDK 179

Query: 183 SLQLIADNYQELESLNLTRYVNMILLGLFYI 213
           S+QL+A++YQ+LESL++TR V +   GL  +
Sbjct: 180 SMQLVAESYQDLESLDITRCVKITDDGLLQV 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530677|ref|XP_003533907.1| PREDICTED: F-box protein At3g58530-like [Glycine max]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 173/234 (73%), Gaps = 11/234 (4%)

Query: 8   VKAAEEEETWSKETVPKVIRIMST----RLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63
           ++   +E+ W +ETVPKV++++ +     LS  +++SLLLVSP LHRTL+    LW  ++
Sbjct: 1   MEGESKEDVWCRETVPKVLKLVCSTLPLSLSHTNLVSLLLVSPSLHRTLLCSQPLWQSLN 60

Query: 64  LREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 123
            RE+NNAGNRL+AALS+PRY +V++INLEFA+D+ED HL L+  KC  SLQ LESLNLNG
Sbjct: 61  FRELNNAGNRLIAALSLPRYCNVKQINLEFARDVEDAHLILIMDKCFNSLQSLESLNLNG 120

Query: 124 CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS 183
           CQKISD GIE I+S CP+LK FSIYWNVRVTD G+QH+VKNCKHIIDLN+SGCKN+ D+ 
Sbjct: 121 CQKISDTGIEAITSCCPQLKSFSIYWNVRVTDRGLQHIVKNCKHIIDLNISGCKNISDQG 180

Query: 184 LQLIADNYQELESLNLTRYVNMILLGL-------FYIWSNNILLMSEFIYHGIR 230
            QL+ADNY ELESLNLTR + +   GL        ++ S N+  +S F     R
Sbjct: 181 AQLVADNYPELESLNLTRCIKLTDDGLKSLLHKCLFLQSLNLYALSSFTDEAYR 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410977|ref|NP_567069.1| F-box protein [Arabidopsis thaliana] gi|75154905|sp|Q8LB33.1|FB330_ARATH RecName: Full=F-box protein At3g58530 gi|21593045|gb|AAM64994.1| unknown [Arabidopsis thaliana] gi|332646275|gb|AEE79796.1| F-box protein [Arabidopsis thaliana]

 Score =  273 bits (698), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 161/192 (83%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 YVNMILLGLFYI 213
            V +   GL  +
Sbjct: 199 CVKITDDGLLQV 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450960|gb|AAK96751.1| putative protein [Arabidopsis thaliana] gi|17978711|gb|AAL47349.1| putative protein [Arabidopsis thaliana]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 161/192 (83%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 YVNMILLGLFYI 213
            V +   GL  +
Sbjct: 199 CVKITDDGLLQV 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498858|gb|AFK37495.1| unknown [Lotus japonicus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/225 (56%), Positives = 165/225 (73%), Gaps = 2/225 (0%)

Query: 13  EEETWSKETVPKVIRIMSTRL--SQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNA 70
           ++  W +ETVPKV +++ + L  +  D++SLLLVSP LHRTLVS   LW  +  RE+NNA
Sbjct: 12  KDHVWCRETVPKVFKLVCSTLPLAHTDLVSLLLVSPSLHRTLVSCQPLWQSLIFREVNNA 71

Query: 71  GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK 130
           GNRL+AALS+PRYR+V++I+LEFA+ +ED HL L+K KC  SLQ LESLNLNGCQKISD 
Sbjct: 72  GNRLLAALSLPRYRYVKQIDLEFARHVEDTHLILIKDKCFDSLQSLESLNLNGCQKISDT 131

Query: 131 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190
           GIE I+S CP+LK FSIYWNVRVTD  + H V+NCKHI+DLN+SGCK + D+ +Q +A+N
Sbjct: 132 GIEAITSCCPQLKTFSIYWNVRVTDTSLLHTVRNCKHIVDLNISGCKQITDQGIQFVAEN 191

Query: 191 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAV 235
           Y ELESLNLTR + +   GL  +    + L S  +Y    F  A 
Sbjct: 192 YPELESLNLTRCIKVTDDGLKPLLHQCLSLQSLNLYALSSFTDAA 236

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2076376	353	AT3G58530 [Arabidopsis thalian	0.764	0.597	0.639	1.4e-69
TAIR|locus:2027082	360	SKP2A [Arabidopsis thaliana (t	0.630	0.483	0.275	9.8e-12
ZFIN|ZDB-GENE-040426-2440	310	fbxl15 "F-box and leucine-rich	0.543	0.483	0.270	2e-11
UNIPROTKB|B5X441	292	fbxl15 "F-box/LRR-repeat prote	0.510	0.482	0.239	7.4e-11
WB|WBGene00015350	466	C02F5.7 [Caenorhabditis elegan	0.380	0.225	0.314	4.8e-10
UNIPROTKB|E6ZHJ8	292	fbxl15 "F-box/LRR-repeat prote	0.478	0.452	0.242	1.9e-09
ZFIN|ZDB-GENE-060825-13	249	amn1 "antagonist of mitotic ex	0.413	0.457	0.316	2.9e-09
DICTYBASE|DDB_G0287415	1012	DDB_G0287415 "SCF E3 ubiquitin	0.336	0.091	0.408	3.7e-09
TAIR|locus:2149805	665	AT5G01720 "AT5G01720" [Arabido	0.322	0.133	0.348	4.8e-09
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.467	0.304	0.320	5.1e-09

TAIR|locus:2076376 AT3G58530 [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 135/211 (63%), Positives = 169/211 (80%)

Query:    16 TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLV 75
             TW +E V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+
Sbjct:    13 TWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLL 72

Query:    76 AALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135
             AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I
Sbjct:    73 AALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAI 132

Query:   136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
             +S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LE
Sbjct:   133 TSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLE 192

Query:   196 SLNLTRYVNMILLGLFYIWSNNILLMSEFIY 226
             SLN+TR V +   GL  +      L +  +Y
Sbjct:   193 SLNITRCVKITDDGLLQVLQKCFSLQTLNLY 223

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 51/185 (27%), Positives = 96/185 (51%)

Query:    17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVA 76
             W    V  ++RI+S    +  I++  + + W  R  +S+    L   L   NN  N LV 
Sbjct:    28 WKDIPVELLMRILSLVDDRNVIVASGVCTGW--RDAISFGLTRL--RLSWCNNNMNSLVL 83

Query:    77 ALSIPRYRHVREINL-EFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135
             +L +P++  ++ +NL +    +ED  +E +   C     +L+ L+L+   KI+D+ +  +
Sbjct:    84 SL-VPKFVKLQTLNLRQDKPQLEDNAVEAIANHC----HELQELDLSKSLKITDRSLYAL 138

Query:   136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQEL 194
             +  CP+L   ++      +D  I +L + C+ +  LNL GC K + D +L+ I +N  ++
Sbjct:   139 AHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQM 198

Query:   195 ESLNL 199
             +SLNL
Sbjct:   199 QSLNL 203

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

ZFIN|ZDB-GENE-040426-2440 fbxl15 "F-box and leucine-rich repeat protein 15" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 43/159 (27%), Positives = 82/159 (51%)

Query:    62 IDLREMNNAGNR-LVA-ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 119
             +DLR       R LVA +LS PR +H   ++L   + ++   L  L   C      L SL
Sbjct:   130 VDLRGCAQLSRRALVAVSLSCPRLQH---LSLAHCEWVDSLALRSLADHC----PMLRSL 182

Query:   120 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 179
             +L  C+++ D  +  ++  CPEL+  S+  N  +TD  ++ + K C+ +  L+L+GC  +
Sbjct:   183 DLTACRQLKDPAVCYLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTGCLRV 242

Query:   180 LDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218
              +++++ +A+   +L+SL +    N+    L  +   N+
Sbjct:   243 RNEAIRTLAEYCPKLQSLKVNHCHNVTESSLGVLRRRNV 281

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

UNIPROTKB|B5X441 fbxl15 "F-box/LRR-repeat protein 15" [Salmo salar (taxid:8030)]

 Score = 168 (64.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/146 (23%), Positives = 78/146 (53%)

Query:    60 LVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 119
             L +D+R  +      + A+S+    H++ + L   + ++   +  L   C G    L S+
Sbjct:   110 LRVDMRGCDRLTRHSLVAVSLS-CTHLQYLGLAHCEWVDSLSIRSLADHCGG----LRSI 164

Query:   120 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 179
             +L  C+++ D+ I  +S  C +++  S+  N  +TD+ ++ + KNC+ +  L+L+GC  +
Sbjct:   165 DLTACRQLKDEAICYLSKKCLKMRSLSVAVNANITDVSVEEVAKNCRELEQLDLTGCLRV 224

Query:   180 LDKSLQLIADNYQELESLNLTRYVNM 205
              + S++ +A+   +L+SL +    N+
Sbjct:   225 RNDSIRTVAEYCPKLQSLKVNHCHNV 250

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

WB|WBGene00015350 C02F5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 166 (63.5 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 34/108 (31%), Positives = 60/108 (55%)

Query:    93 FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 152
             F +D++   +E L  +C G L++L   +L GC+ + D  +   +S CP L+  S+Y   R
Sbjct:   105 FQRDVKTAVVENLARRCGGFLKEL---SLKGCENVHDSALRTFTSRCPNLEHLSLYRCKR 161

Query:   153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT 200
             VTD   ++L + C  +  LNL  C ++ D++++ I D    L  LN++
Sbjct:   162 VTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNIS 209

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

UNIPROTKB|E6ZHJ8 fbxl15 "F-box/LRR-repeat protein 15" [Dicentrarchus labrax (taxid:13489)]

 Score = 157 (60.3 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 33/136 (24%), Positives = 73/136 (53%)

Query:    85 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKV 144
             H++ + L   + ++   L  L   C G    L+S++L  C+++ D  I  ++  C +L+ 
Sbjct:   134 HLQHLGLAHCEWVDSLSLRSLADHCGG----LQSIDLTACRQLKDDAICYLAKKCLKLRS 189

Query:   145 FSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVN 204
              S+  N  +TD  ++ + KNC+ +  L+L+GC  + ++S++ +A+   +L+SL +    N
Sbjct:   190 LSLAVNANITDESVEEVAKNCRGLEQLDLTGCLRVRNQSIRTLAEYCPKLQSLKVNHCHN 249

Query:   205 MILLGLFYIWSNNILL 220
             +    L  +   N+++
Sbjct:   250 VTESSLDPLRKRNVVI 265

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

ZFIN|ZDB-GENE-060825-13 amn1 "antagonist of mitotic exit network 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 37/117 (31%), Positives = 65/117 (55%)

Query:    96 DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 155
             D+++  +     K + SL  L ++ L GC +I+ +G+E+++  CP L+V  +     VTD
Sbjct:    63 DLQNCKISDSALKQINSLH-LRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVTD 121

Query:   156 IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL--TRYVNMILLGL 210
              GIQ L ++CK +  ++L GC  L DK+L  +  N + L S+    T   +  ++GL
Sbjct:   122 SGIQALARHCKCLEVISLRGCSALSDKALLELGGNCKMLHSIYFSGTEVTDQGVIGL 178

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0287415 DDB_G0287415 "SCF E3 ubiquitin ligase complex F-box protein GRR1" [Dictyostelium discoideum (taxid:44689)]

 Score = 163 (62.4 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 38/93 (40%), Positives = 56/93 (60%)

Query:   105 LKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 164
             L +K +  L  L+SLNLNGCQ+I++  +  IS++C  L+   +    RV D GI  LV  
Sbjct:   244 LFSKQISRLNQLKSLNLNGCQQITNDNLCKISNSCKHLEEIHLNGCNRVDDQGIVDLVSK 303

Query:   165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESL 197
             CK I  L++SG   L D+S+ +I    Q+L+SL
Sbjct:   304 CKKIKILSMSGLNLLTDRSMTMICQKLQDLQSL 336

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query:    96 DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 155
             D+ D  ++    K + S   L SL L  C  I+DKG+  I   C  L+   +Y +V +TD
Sbjct:   413 DLTDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITD 472

Query:   156 IGIQHLVKNCKHIIDLNLSGCKNLLDKSL 184
             +GI  + + C H+  +N+S C+++ DKSL
Sbjct:   473 VGISTIAQGCIHLETINISYCQDITDKSL 501

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS;TAS

GO:0009407 "toxin catabolic process" evidence=RCA

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 43/134 (32%), Positives = 66/134 (49%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             RH+  +NL +   I    +E L   C G    L +L L GC ++ D+ ++ I + C EL 
Sbjct:   156 RHLEYLNLSWCDQITKDGVEALVRGCRG----LRALLLRGCTQLEDEALKHIQNYCHELV 211

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203
               ++    RVTD G+  L + C  +  L LSGC +L D SL  +A N   L+ L   R  
Sbjct:   212 SLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCS 271

Query:   204 NMILLGLFYIWSNN 217
             ++   G F + + N
Sbjct:   272 HLTDAG-FTLLARN 284

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	3e-11
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-09
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.004

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 169
           L +   L+ L L G + I D+G+  ++ +CP L+V  +     +TD GI  L  NC  + 
Sbjct: 48  LSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 170 DLNLS---GCKNLLDKSLQLIADNYQELESLNL 199
            +NL        + D SL  +  N   L+++  
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             ++++ L  ++ I+D  L  L   C      L+ L+L  C+ I+D GI  +++ CP+L+
Sbjct: 52  NKLKKLILPGSKLIDDEGLIALAQSCPN----LQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 144 VFSIYWNVR---VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNL 199
             ++  +     +TD+ +  L KNC  +  +  +GC ++ DK + +L +   + LE L+L
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSL 166

Query: 200 TRYVNM 205
               N+
Sbjct: 167 NNCRNL 172

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII--SSTCPELKVFSIYWNVRV 153
           D+ D+ +  L + C    + LE L+LN C+ ++D+ I  I  S+  P L V        +
Sbjct: 144 DVTDKGVWELASGCS---KSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200

Query: 154 TD 155
           TD
Sbjct: 201 TD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG4341	483	consensus F-box protein containing LRR [General fu	99.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.85
KOG4341	483	consensus F-box protein containing LRR [General fu	99.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.57
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.53
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.44
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.09
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.04
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.98
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.55
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.43
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.33
KOG4308	478	consensus LRR-containing protein [Function unknown	96.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.87
KOG4308	478	consensus LRR-containing protein [Function unknown	96.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.0
PLN03150	623	hypothetical protein; Provisional	95.89
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.87
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.02
PLN03150	623	hypothetical protein; Provisional	94.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.25
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	92.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.53
PRK15386	426	type III secretion protein GogB; Provisional	92.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.31
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.12
KOG0617	264	consensus Ras suppressor protein (contains leucine	91.77
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	90.46
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.37
PRK15386	426	type III secretion protein GogB; Provisional	90.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	89.91
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	87.5
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	86.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	84.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	82.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	81.36

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.93  E-value=2e-26  Score=193.72  Aligned_cols=243  Identities=20%  Similarity=0.301  Sum_probs=169.2

Q ss_pred             HHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchh----------------------------h
Q 023841           23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNR----------------------------L   74 (276)
Q Consensus        23 p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----------------------------~   74 (276)
                      ||.+..+|++|+...+.+++++|+. |+..+.+...|+.+++..+....+.                            .
T Consensus        77 pEl~lkvFS~LDtksl~r~a~~c~~-~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ss  155 (483)
T KOG4341|consen   77 PELLLKVFSMLDTKSLCRAAQCCTM-WNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSS  155 (483)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH-hhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcch
Confidence            6899999999999999999999999 6678999999999998875433221                            1


Q ss_pred             HHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcC
Q 023841           75 VAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVT  154 (276)
Q Consensus        75 l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~  154 (276)
                      +..+. .+||++.+|.+.+|.++||..+..++.+|    ++|++|++..|..+++..+++++.+||+|+.|++++|+.++
T Consensus       156 lrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~  230 (483)
T KOG4341|consen  156 LRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS  230 (483)
T ss_pred             hhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence            11222 56677777777777777777777777766    67777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchh--------------
Q 023841          155 DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL--------------  220 (276)
Q Consensus       155 ~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~--------------  220 (276)
                      .+++..+.++|..++.+...||..++++.+..+...++.+-++++..|..+||+++..++.++...              
T Consensus       231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~  310 (483)
T KOG4341|consen  231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE  310 (483)
T ss_pred             cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence            777777777777777776667766777777766666666777777777777777766555543221              


Q ss_pred             hHHHHHcCCCccceecccccC-CCCCcceeEEEeeccCCCCceeeeecceecccc
Q 023841          221 MSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQ  274 (276)
Q Consensus       221 l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~  274 (276)
                      .......++.+|+.+.+..+. ++|. +|..+.  ..|+.|+++.+.+|..+.|.
T Consensus       311 ~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~--rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  311 VLWALGQHCHNLQVLELSGCQQFSDR-GFTMLG--RNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             HHHHHhcCCCceEEEeccccchhhhh-hhhhhh--cCChhhhhhcccccceehhh
Confidence            112344566677777774443 4444 666666  77778888887777776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5e-21  Score=155.23  Aligned_cols=178  Identities=23%  Similarity=0.347  Sum_probs=107.0

Q ss_pred             CCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHH-------------------
Q 023841           16 TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVA-------------------   76 (276)
Q Consensus        16 ~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-------------------   76 (276)
                      .|..++ -|++..||+.|...++.+++.||++|++ +..+.++|..+|+..-....+...+                   
T Consensus        97 ~~~slp-DEill~IFs~L~kk~LL~~~~VC~Rfyr-~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p  174 (419)
T KOG2120|consen   97 SWDSLP-DEILLGIFSCLCKKELLKVSGVCKRFYR-LASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP  174 (419)
T ss_pred             CcccCC-HHHHHHHHHhccHHHHHHHHHHHHHHhh-ccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence            366644 4799999999999999999999999775 6888999999998763322211110                   


Q ss_pred             ---HhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCc
Q 023841           77 ---ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV  153 (276)
Q Consensus        77 ---~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l  153 (276)
                         ..+...-..|++|+++. ..++...+..+..-|    .+|+.|++.+ ..++|.-+..+++ -.+|++|+++.|..+
T Consensus       175 rlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C----~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  175 RLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQC----SKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGF  247 (419)
T ss_pred             hhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHH----Hhhhhccccc-cccCcHHHHHHhc-cccceeecccccccc
Confidence               00001112466666665 466666666666655    5566666665 4555555555555 345666666666666


Q ss_pred             CHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       154 ~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      |..++..+..+|+.|.+|+++.|...++.....++.--+.|.+|+++||
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            6666666655666666666666533333322222222345555555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.78  E-value=7.7e-20  Score=154.26  Aligned_cols=236  Identities=19%  Similarity=0.235  Sum_probs=170.5

Q ss_pred             cCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHcc
Q 023841           31 TRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCL  110 (276)
Q Consensus        31 ~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~  110 (276)
                      .+|.-..+..+..|--.-.+.+...++++..+.+.++...++.....+. ++|+.|++|++..|..+|+..++.+++.| 
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-RYCRKLRHLNLHSCSSITDVSLKYLAEGC-  215 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-HhcchhhhhhhcccchhHHHHHHHHHHhh-
Confidence            4555555566666666656677888999999999999888888877777 79999999999999999999999999988 


Q ss_pred             CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841          111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN  190 (276)
Q Consensus       111 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~  190 (276)
                         ++|++|+++.|..++..++..+.++|.+++.+.+.||..++++.+..+..+|+-+..+++.+|..+||+++..+...
T Consensus       216 ---~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  216 ---RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             ---hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence               99999999999999998888888888887777666776666666666665665555555555555555555555555


Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCchhh--------------HHHHHcCCCccceecccccC-CCCCcceeEEEeec
Q 023841          191 YQELESLNLTRYVNMILLGLFYIWSNNILLM--------------SEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETN  255 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l--------------~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~  255 (276)
                      |..|+.|..++|..++|..+.++.+++..+.              ......+|+.|+.+++.-+- +.|. .+....  .
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls--~  369 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLS--R  369 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhc--c
Confidence            5555555555555555555555555443210              01234556667777774333 3343 466666  8


Q ss_pred             cCCCCceeeeecceecccc
Q 023841          256 TYKHGKEKHIIETIKTGQQ  274 (276)
Q Consensus       256 ~~~~L~~l~~~~~~~~~~~  274 (276)
                      .||.|+.+.+.-|+.|+|.
T Consensus       370 ~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             CCchhccCChhhhhhhhhh
Confidence            9999999999999999885

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.67  E-value=4.2e-16  Score=141.07  Aligned_cols=86  Identities=29%  Similarity=0.604  Sum_probs=39.7

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      .|++|++|+++.|..++|.++..++..|    ++|+.|.+.+|..++++++.+++..|++|++|++++|..+++.++..+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c----~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRC----PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhC----CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence            3444444444444444444444444443    444444444443344444444444444444444444444444444444


Q ss_pred             HHhCCCCcEE
Q 023841          162 VKNCKHIIDL  171 (276)
Q Consensus       162 ~~~~~~L~~L  171 (276)
                      +.+|++|+.|
T Consensus       317 ~~~c~~l~~l  326 (482)
T KOG1947|consen  317 LKNCPNLREL  326 (482)
T ss_pred             HHhCcchhhh
Confidence            4444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.60  E-value=4.7e-15  Score=134.24  Aligned_cols=218  Identities=22%  Similarity=0.325  Sum_probs=169.3

Q ss_pred             HHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccC-CCCCcHHH--HHHHHHHccCCCCCccEEecCCCC
Q 023841           49 HRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF-AQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQ  125 (276)
Q Consensus        49 ~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~-~~~l~~~~--~~~i~~~~~~~~~~L~~L~l~~c~  125 (276)
                      ...+....+.++.+.+..+....+..+..+. ..+++|+.|++++ |..+++..  ...+...|    ++|+.|+++.|.
T Consensus       180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~L~~l~l~~~~  254 (482)
T KOG1947|consen  180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSIC----RKLKSLDLSGCG  254 (482)
T ss_pred             HHHHHhhCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhc----CCcCccchhhhh
Confidence            3344444667777888887766655454555 6899999999987 44444444  34455544    999999999997


Q ss_pred             CCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCC---C
Q 023841          126 KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---Y  202 (276)
Q Consensus       126 ~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~---c  202 (276)
                      .++|.++.+++..|++|++|.+.+|..++++++..++..|++|++|++++|..++|.++..+..+|++|+.|.+..   |
T Consensus       255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c  334 (482)
T KOG1947|consen  255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC  334 (482)
T ss_pred             ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence            7999999999999999999999999889999999999999999999999999999999999988999888776544   4


Q ss_pred             CCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCC--------------ceeeeecc
Q 023841          203 VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG--------------KEKHIIET  268 (276)
Q Consensus       203 ~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L--------------~~l~~~~~  268 (276)
                      ..+++.++..+.......+..+....|+.++.+.+.+....+. +.....  .+||+|              +.|++..|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~l--~gc~~l~~~l~~~~~~~~~l~~L~l~~~  411 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL-GLELSL--RGCPNLTESLELRLCRSDSLRVLNLSDC  411 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc-chHHHh--cCCcccchHHHHHhccCCccceEecccC
Confidence            5688888887766543345567889999999999977775555 544444  677777              66666666


Q ss_pred             eecccc
Q 023841          269 IKTGQQ  274 (276)
Q Consensus       269 ~~~~~~  274 (276)
                      ..+++.
T Consensus       412 ~~~t~~  417 (482)
T KOG1947|consen  412 RLVTDK  417 (482)
T ss_pred             cccccc
Confidence            655543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=8.7e-14  Score=113.48  Aligned_cols=188  Identities=16%  Similarity=0.253  Sum_probs=144.2

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.+|++.......... .+ ++.|..|+.|++.+ ..++|.....|+.     ..+|+.|++++|+.++..++..+..
T Consensus       186 Rlq~lDLS~s~it~stl~-~i-Ls~C~kLk~lSlEg-~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH-GI-LSQCSKLKNLSLEG-LRLDDPIVNTIAK-----NSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhHHhhcchhheeHHHHH-HH-HHHHHhhhhccccc-cccCcHHHHHHhc-----cccceeeccccccccchhHHHHHHH
Confidence            355677777655443332 22 36899999999998 6899999999887     3899999999999999999999999


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                      .|..|.+|++++|.--++..-..++.--++|..|+++|| .++.+..+.-+.++||+|-.||++.|..+++.-+..+   
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~---  334 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF---  334 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH---
Confidence            999999999999954444433334444578999999998 5677888888999999999999999988888554443   


Q ss_pred             CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                                ..++.|+.+.++-++..++-.   +++...-|.|..|++.+|-
T Consensus       335 ----------~kf~~L~~lSlsRCY~i~p~~---~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  335 ----------FKFNYLQHLSLSRCYDIIPET---LLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ----------HhcchheeeehhhhcCCChHH---eeeeccCcceEEEEecccc
Confidence                      335667888887666555522   3344788999999998874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=7.3e-12  Score=107.51  Aligned_cols=199  Identities=19%  Similarity=0.171  Sum_probs=125.9

Q ss_pred             CCCCccEEecCCccCcc--hhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841           55 YPSLWLVIDLREMNNAG--NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI  132 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~  132 (276)
                      ..+.++.++++++....  ...+..+. .. ++|++|++++| .+++.++..+........++|+.|++++| .++..+.
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~  154 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASC  154 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHH
Confidence            35677888887766542  22333333 23 67888888875 57766766666554322378888888886 6665444


Q ss_pred             HHH---HhhCCCCCeEeccCCCCcCHHHHHHHHHhC---CCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCC
Q 023841          133 EII---SSTCPELKVFSIYWNVRVTDIGIQHLVKNC---KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV  203 (276)
Q Consensus       133 ~~l---~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~---~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~  203 (276)
                      ..+   ...+++|++|++++| .+++.++..++..+   ++|++|++++| .+++.++..+..   .+++|+.|++++| 
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-  231 (319)
T cd00116         155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-  231 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence            333   344667888888876 67777666655433   48888888887 677666655443   4678888888887 


Q ss_pred             CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE-eeccCCCCceeeeecce
Q 023841          204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI  269 (276)
Q Consensus       204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~~~~  269 (276)
                      .+++.++..++..        ...+.+.|+.++++++.+++. ++..+. ....+++|+.+++.++.
T Consensus       232 ~l~~~~~~~l~~~--------~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         232 NLTDAGAAALASA--------LLSPNISLLTLSLSCNDITDD-GAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             cCchHHHHHHHHH--------HhccCCCceEEEccCCCCCcH-HHHHHHHHHhcCCCccEEECCCCC
Confidence            6888777665431        112446677777777777654 322221 11345677777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=7.4e-12  Score=107.46  Aligned_cols=195  Identities=18%  Similarity=0.158  Sum_probs=139.3

Q ss_pred             CCccEEecCCccCcchhhHHH--hccccC-CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAA--LSIPRY-RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~--l~~~~~-~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      +.++.++++++...... +..  -.+..+ ++|+.|++++| .++..+...+...+ ..+++|++|++++| .+++.++.
T Consensus       108 ~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~  183 (319)
T cd00116         108 SSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKAL-RANRDLKELNLANN-GIGDAGIR  183 (319)
T ss_pred             CcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHH-HhCCCcCEEECcCC-CCchHHHH
Confidence            66999999987654321 111  122455 89999999996 56756655555544 23478999999995 88887777


Q ss_pred             HHHhh---CCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHhcC----CCccEEecCCCC
Q 023841          134 IISST---CPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRYV  203 (276)
Q Consensus       134 ~l~~~---~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~~~----~~L~~L~l~~c~  203 (276)
                      .+...   +++|+.|++++| .+++.++..++   ..+++|++|++++| .+++.++..++..+    +.|++|++++| 
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-  260 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-  260 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence            66544   459999999988 68777765543   46789999999997 78988888887754    79999999998 


Q ss_pred             CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccC-CCCceeeeec
Q 023841          204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTY-KHGKEKHIIE  267 (276)
Q Consensus       204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~~  267 (276)
                      .+++.+...+..         ....++.|+.++++.+.+++............. ++|+++++.+
T Consensus       261 ~i~~~~~~~l~~---------~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         261 DITDDGAKDLAE---------VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             CCCcHHHHHHHH---------HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            899888777643         334447899999999998877221111111333 5788777754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=9.9e-10  Score=91.72  Aligned_cols=203  Identities=15%  Similarity=0.158  Sum_probs=127.7

Q ss_pred             HhcCCCCccEEecCCccCc--chhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEec
Q 023841           52 LVSYPSLWLVIDLREMNNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNL  121 (276)
Q Consensus        52 ~~~~~~~~~~l~l~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~--------~~~~~~L~~L~l  121 (276)
                      +...| .++.++++.+...  ....+..+. ++|..|++|.+.+| .+...+-..|+...        ..+-++|+.+.+
T Consensus        88 L~~~~-~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   88 LLGCP-KLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             HhcCC-ceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            34444 7888888876432  233444443 56888888888886 44444444433311        244577888888


Q ss_pred             CCCCCCCHHHHH---HHHhhCCCCCeEeccCCCCcCHHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHHh---cCC
Q 023841          122 NGCQKISDKGIE---IISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQ  192 (276)
Q Consensus       122 ~~c~~l~~~~~~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~  192 (276)
                      ++ +.+.+.+..   ...+.+|.|+.+.++.+ .|..+++..+   ..+|++|+.|++..+ .+|.++-..++.   ..|
T Consensus       165 ~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  165 GR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWP  241 (382)
T ss_pred             ec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccc
Confidence            87 566665543   44456778888888865 5666665433   247888888888885 666666555554   467


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +|+.|+++.| .+.+.|..++.        .....+.+.|+.+.+.++.++-+.+.....-...-|.|.+|++..|-
T Consensus       242 ~L~El~l~dc-ll~~~Ga~a~~--------~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  242 HLRELNLGDC-LLENEGAIAFV--------DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hheeeccccc-ccccccHHHHH--------HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            7888888888 77777766654        23344567777888877776655332222211336677777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1e-10  Score=100.09  Aligned_cols=197  Identities=18%  Similarity=0.102  Sum_probs=122.0

Q ss_pred             HhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHH
Q 023841           52 LVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG  131 (276)
Q Consensus        52 ~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~  131 (276)
                      ..+.+++.+.++++..-......+..++ .++|+|+.|+++.. .+.-..-.....    .+++|+.|.++.| .++...
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~N-rl~~~~~s~~~~----~l~~lK~L~l~~C-Gls~k~  213 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIA-EQLPSLENLNLSSN-RLSNFISSNTTL----LLSHLKQLVLNSC-GLSWKD  213 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHH-Hhcccchhcccccc-cccCCccccchh----hhhhhheEEeccC-CCCHHH
Confidence            4556677777777776655666666665 67888888888752 221111111111    1377888888887 788888


Q ss_pred             HHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841          132 IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF  211 (276)
Q Consensus       132 ~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~  211 (276)
                      +..+...||+|+.|+|.++..+.-.....  +....|++|+|+++..++...+..+ .++|.|+.|+++.| .+++-.+.
T Consensus       214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~L~~Lnls~t-gi~si~~~  289 (505)
T KOG3207|consen  214 VQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-GTLPGLNQLNLSST-GIASIAEP  289 (505)
T ss_pred             HHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-ccccchhhhhcccc-CcchhcCC
Confidence            88888888888888888764332221111  1245688888888755554433333 35888888888886 56554333


Q ss_pred             HHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .....+       ..+.+++|+.|.++.+.+.+-..+..+   ...+||+.|.+...|
T Consensus       290 d~~s~~-------kt~~f~kL~~L~i~~N~I~~w~sl~~l---~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  290 DVESLD-------KTHTFPKLEYLNISENNIRDWRSLNHL---RTLENLKHLRITLNY  337 (505)
T ss_pred             Cccchh-------hhcccccceeeecccCccccccccchh---hccchhhhhhccccc
Confidence            211111       245678888999988887555334333   577788888766554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=3.8e-08  Score=82.43  Aligned_cols=197  Identities=15%  Similarity=0.202  Sum_probs=134.6

Q ss_pred             CCccEEecCCccCc--chhh---HHHh--ccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH
Q 023841           57 SLWLVIDLREMNNA--GNRL---VAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD  129 (276)
Q Consensus        57 ~~~~~l~l~~~~~~--~~~~---l~~l--~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~  129 (276)
                      +.++..+++.....  .+..   +..+  ++..||.|++|++++ +-+...+...+.... +++..|++|.+.+| .+..
T Consensus        58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-NA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~  134 (382)
T KOG1909|consen   58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-NAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGP  134 (382)
T ss_pred             ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-cccCccchHHHHHHH-HhccCHHHHhhhcC-CCCh
Confidence            36777777765321  1211   1111  235788999999998 455555555444433 22589999999997 6676


Q ss_pred             HHHHHHHh------------hCCCCCeEeccCCCCcCHHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHH---hcC
Q 023841          130 KGIEIISS------------TCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNLSGCKNLLDKSLQLIA---DNY  191 (276)
Q Consensus       130 ~~~~~l~~------------~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~ltd~~~~~l~---~~~  191 (276)
                      .+-..++.            .-++|+.+....+ .+-+.+...+   .+.++.|+.+.+..+ .|..+++..++   .+|
T Consensus       135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~  212 (382)
T KOG1909|consen  135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHC  212 (382)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhC
Confidence            65444332            4567999988865 5555554444   466789999999984 77777775554   369


Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE--eeccCCCCceeeeecce
Q 023841          192 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII--ETNTYKHGKEKHIIETI  269 (276)
Q Consensus       192 ~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~~~L~~l~~~~~~  269 (276)
                      |+|+.||++.. -+|..|-.+++         ..+...+.|+.++++++.+.+. |...+.  -....|+|+.+.+..++
T Consensus       213 ~~LevLdl~DN-tft~egs~~La---------kaL~s~~~L~El~l~dcll~~~-Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  213 PHLEVLDLRDN-TFTLEGSVALA---------KALSSWPHLRELNLGDCLLENE-GAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             Ccceeeecccc-hhhhHHHHHHH---------HHhcccchheeecccccccccc-cHHHHHHHHhccCCCCceeccCcch
Confidence            99999999996 67777766664         2667778999999999998887 543332  11458999999988765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.2e-09  Score=89.02  Aligned_cols=113  Identities=22%  Similarity=0.226  Sum_probs=75.3

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCc--CHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV--TDIGI  158 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~l  158 (276)
                      +++..|+.+.+.++ .+.+.+.+..+..|    ++++.|++++.---....+..+++.+|+|+.|+|+.+.-.  ++...
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~----~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKIL----PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhC----CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            56677788887774 56666655555544    8888888887323344567777777888888888754211  11111


Q ss_pred             HHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       159 ~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      .   ..+++|+.|.++.| .+++..+..+...+|+|+.|.+.+.
T Consensus       193 ~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  193 T---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             h---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            1   14567888888887 7778888887777888888888775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.58  E-value=4.7e-08  Score=91.48  Aligned_cols=146  Identities=18%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      +++.+++++.........+... ..+|+|++|.+.+- .+....+..+...    +|+|..||+|++ ++++-  ..+ .
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~-~~~~~dF~~lc~s----FpNL~sLDIS~T-nI~nl--~GI-S  192 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGR-QFDNDDFSQLCAS----FPNLRSLDISGT-NISNL--SGI-S  192 (699)
T ss_pred             hhhhcCccccchhhccHHHHHh-hhCcccceEEecCc-eecchhHHHHhhc----cCccceeecCCC-CccCc--HHH-h
Confidence            4455555554443333333343 45666666666663 3333333344333    366666666664 44442  222 2


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHH-HHHHHHh---cCCCccEEecCCCCCCCHHHHHHH
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIAD---NYQELESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~---~~~~L~~L~l~~c~~it~~~l~~l  213 (276)
                      .+++|+.|.+.+...-+.+.+..+. ++++|+.||+|.-....+. -+....+   .+|.|+.||.++. .++++.+..+
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~l  270 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEEL  270 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHH
Confidence            3666666666655444434455555 5667777777764333333 1222221   2567777777763 6666666665


Q ss_pred             Hh
Q 023841          214 WS  215 (276)
Q Consensus       214 ~~  215 (276)
                      ..
T Consensus       271 l~  272 (699)
T KOG3665|consen  271 LN  272 (699)
T ss_pred             HH
Confidence            54

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.57  E-value=3.9e-07  Score=85.41  Aligned_cols=165  Identities=10%  Similarity=0.145  Sum_probs=122.1

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      .-.+|++|++++...++......++.-+    |.|++|.+++ ..+..+.+..++..+|+|..||++++ ++++-  ..+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~L----PsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI  191 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTML----PSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI  191 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhC----cccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc--HHH
Confidence            3468999999997777776777777765    9999999999 47777778899999999999999986 67653  333


Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      + .+++|+.|.+.+-..-+...+..++. +++|+.||+|.-...++.-+...-        -.....+|+|+.++.+...
T Consensus       192 S-~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qY--------lec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  192 S-RLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQY--------LECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             h-ccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHH--------HHhcccCccccEEecCCcc
Confidence            3 78899999998865555677888875 999999999996444433111110        1134557899999998888


Q ss_pred             CCCCcceeEEEeeccCCCCceeeeec
Q 023841          242 GGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                      +... .+..+.  ...|+|+.+.+-.
T Consensus       262 i~~~-~le~ll--~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  262 INEE-ILEELL--NSHPNLQQIAALD  284 (699)
T ss_pred             hhHH-HHHHHH--HhCccHhhhhhhh
Confidence            7766 566666  6777777776543

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.53  E-value=7.5e-08  Score=58.02  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEec
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l   64 (276)
                      |..+| +|++.+||+||+..|+.++++||+.|++. +.+...|+.+.+
T Consensus         1 i~~LP-~Eil~~If~~L~~~dl~~~~~vcr~w~~~-~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLP-DEILLEIFSYLDPRDLLRLSLVCRRWRRI-ANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS--HHHHHHHHTTS-HHHHHHHTTSSHHHHHH-HTCCCHHHHHC-
T ss_pred             ChHhH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HCChhhhhhhcc
Confidence            45555 68999999999999999999999997765 444488876543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.49  E-value=2.9e-07  Score=90.80  Aligned_cols=38  Identities=3%  Similarity=0.122  Sum_probs=18.9

Q ss_pred             CCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          228 GIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      ++++|+.++++.+.+....  ...+  ..+++|+.|++..+.
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~--p~~~--~~l~~L~~L~l~~n~  319 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEI--PELV--IQLQNLEILHLFSNN  319 (968)
T ss_pred             hccCcCEEECcCCeeccCC--ChhH--cCCCCCcEEECCCCc
Confidence            4455555555544433221  1112  356677777776554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2e-07  Score=72.56  Aligned_cols=88  Identities=22%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             CccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCc
Q 023841          115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL  194 (276)
Q Consensus       115 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L  194 (276)
                      .++.++-+++ .|..+|+..+.. ++.++.|.+.+|..+.|.++..++.-.++|+.|++++|..||+.|+..+.+ +++|
T Consensus       102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL  178 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence            3556666663 666777777655 777777777777777777777777666777777777777777777777764 7777


Q ss_pred             cEEecCCCCCC
Q 023841          195 ESLNLTRYVNM  205 (276)
Q Consensus       195 ~~L~l~~c~~i  205 (276)
                      +.|.|.+=+.+
T Consensus       179 r~L~l~~l~~v  189 (221)
T KOG3864|consen  179 RRLHLYDLPYV  189 (221)
T ss_pred             HHHHhcCchhh
Confidence            77777764333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.42  E-value=4.7e-07  Score=89.27  Aligned_cols=108  Identities=15%  Similarity=0.100  Sum_probs=47.6

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.++++.+....... ..  +..+++|++|+++++. ++...-..+.     .+++|++|++++| .++......+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p-~~--~~~l~~L~~L~L~~n~-l~~~~p~~~~-----~l~~L~~L~L~~n-~l~~~~p~~l  208 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIP-ND--IGSFSSLKVLDLGGNV-LVGKIPNSLT-----NLTSLEFLTLASN-QLVGQIPREL  208 (968)
T ss_pred             cCCCCEEECcCCcccccCC-hH--HhcCCCCCEEECccCc-ccccCChhhh-----hCcCCCeeeccCC-CCcCcCChHH
Confidence            4567778877765432111 11  2456777777777642 2211111121     1356666666654 3322111112


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                       ..+++|+.|+++++ .++...-..+. .+++|++|++++|
T Consensus       209 -~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n  246 (968)
T PLN00113        209 -GQMKSLKWIYLGYN-NLSGEIPYEIG-GLTSLNHLDLVYN  246 (968)
T ss_pred             -cCcCCccEEECcCC-ccCCcCChhHh-cCCCCCEEECcCc
Confidence             12455555555544 22221111222 4445555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=5.2e-07  Score=70.30  Aligned_cols=88  Identities=24%  Similarity=0.353  Sum_probs=76.4

Q ss_pred             ccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhC
Q 023841           86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC  165 (276)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~  165 (276)
                      ++.++-++ ..|...+++.+..     ++.++.|.+.+|..+.|.++..+....++|+.|++++|+.||+.++..+. .+
T Consensus       103 IeaVDAsd-s~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~l  175 (221)
T KOG3864|consen  103 IEAVDASD-SSIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KL  175 (221)
T ss_pred             EEEEecCC-chHHHHHHHHHhc-----cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hh
Confidence            56667666 4788888888865     58999999999999999999999999999999999999999999999887 78


Q ss_pred             CCCcEEecCCCCCCC
Q 023841          166 KHIIDLNLSGCKNLL  180 (276)
Q Consensus       166 ~~L~~L~l~~c~~lt  180 (276)
                      ++|+.|.+++-..+.
T Consensus       176 knLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  176 KNLRRLHLYDLPYVA  190 (221)
T ss_pred             hhhHHHHhcCchhhh
Confidence            999999998865554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.09  E-value=3.1e-07  Score=71.41  Aligned_cols=136  Identities=24%  Similarity=0.309  Sum_probs=48.4

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      .++..+++|++.++ .++.  ++.+...    +.+|+.|+++++ .++.  +..+. .++.|++|+++++ .+++-+ ..
T Consensus        16 ~n~~~~~~L~L~~n-~I~~--Ie~L~~~----l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~   82 (175)
T PF14580_consen   16 NNPVKLRELNLRGN-QIST--IENLGAT----LDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EG   82 (175)
T ss_dssp             -----------------------S--TT-----TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HH
T ss_pred             cccccccccccccc-cccc--ccchhhh----hcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cc
Confidence            34557888999884 4432  2333322    378999999985 5554  33332 3788999999876 555421 23


Q ss_pred             HHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  239 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~  239 (276)
                      +...+|+|++|.++++ .|.+ ..+..+. .+|+|+.|++.+++ +++..          .-+......+|.|+.|+-..
T Consensus        83 l~~~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~~~----------~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGNP-VCEKK----------NYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHH-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT-G-GGGST----------THHHHHHHH-TT-SEETTEE
T ss_pred             hHHhCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCCc-ccchh----------hHHHHHHHHcChhheeCCEE
Confidence            4456899999999885 5543 2344443 58999999999874 44321          11244566777788777644


Q ss_pred             cCC
Q 023841          240 SNG  242 (276)
Q Consensus       240 ~~~  242 (276)
                      ...
T Consensus       150 V~~  152 (175)
T PF14580_consen  150 VTE  152 (175)
T ss_dssp             TTS
T ss_pred             ccH
Confidence            443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.04  E-value=1.3e-06  Score=78.20  Aligned_cols=12  Identities=25%  Similarity=0.410  Sum_probs=6.6

Q ss_pred             hCCCCcEEecCC
Q 023841          164 NCKHIIDLNLSG  175 (276)
Q Consensus       164 ~~~~L~~L~l~~  175 (276)
                      .|++|++|++++
T Consensus       315 ftqkL~~LdLs~  326 (873)
T KOG4194|consen  315 FTQKLKELDLSS  326 (873)
T ss_pred             hcccceeEeccc
Confidence            455555555555

>PLN03210 Resistant to P

Probab=98.04  E-value=1.2e-05  Score=80.55  Aligned_cols=86  Identities=21%  Similarity=0.293  Sum_probs=40.2

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|+.|+++++..+....  .+     ..+++|+.|++++|..+..-  -.-...+++|+.|++++|..++.-..  
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip--~l-----s~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~--  699 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP--DL-----SMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT--  699 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC--cc-----ccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC--
Confidence            345666666666543321110  01     12366666666666443221  11122356666666666644322100  


Q ss_pred             HHHhCCCCcEEecCCCCC
Q 023841          161 LVKNCKHIIDLNLSGCKN  178 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~  178 (276)
                       ..++++|+.|++++|..
T Consensus       700 -~i~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        700 -GINLKSLYRLNLSGCSR  716 (1153)
T ss_pred             -cCCCCCCCEEeCCCCCC
Confidence             01355666666666643

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.98  E-value=2.8e-06  Score=66.14  Aligned_cols=128  Identities=20%  Similarity=0.272  Sum_probs=50.4

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      ..+++++.+......   ..+. ..+.+|+.|+++++ .++.  +..+.     .+++|+.|++++ +.++.-+ ..+..
T Consensus        20 ~~~~L~L~~n~I~~I---e~L~-~~l~~L~~L~Ls~N-~I~~--l~~l~-----~L~~L~~L~L~~-N~I~~i~-~~l~~   85 (175)
T PF14580_consen   20 KLRELNLRGNQISTI---ENLG-ATLDKLEVLDLSNN-QITK--LEGLP-----GLPRLKTLDLSN-NRISSIS-EGLDK   85 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS---S----TT---------TT--EEE--S-S---S-C-HHHHH
T ss_pred             ccccccccccccccc---cchh-hhhcCCCEEECCCC-CCcc--ccCcc-----ChhhhhhcccCC-CCCCccc-cchHH
Confidence            456677777654332   2222 35689999999985 4432  22222     248999999999 6877632 23445


Q ss_pred             hCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCH-HHH-HHHHhcCCCccEEecCCC
Q 023841          138 TCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD-KSL-QLIADNYQELESLNLTRY  202 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~-~~l~~~~~~L~~L~l~~c  202 (276)
                      .+|+|++|+++++ .+.+ ..+..+. .+|+|+.|++.++ .+++ ... ..+...+|+|+.||-...
T Consensus        86 ~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   86 NLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             H-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence            6999999999976 4544 3344554 7999999999996 4442 222 234556999999996553

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.83  E-value=2.3e-05  Score=40.59  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=15.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHH
Q 023841          191 YQELESLNLTRYVNMILLGLFYIW  214 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~~~l~~l~  214 (276)
                      ||+|+.|+|++|.++||.|+..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            466666666666666666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.82  E-value=6.3e-06  Score=73.92  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=28.5

Q ss_pred             CCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       141 ~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      ++++|+|+++ .||+-+...+. ++.+|..|.++.+ .+|.-.... ++++|+|+.|+|...
T Consensus       174 ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r~-Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  174 NIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRN-RITTLPQRS-FKRLPKLESLDLNRN  231 (873)
T ss_pred             CceEEeeccc-ccccccccccc-ccchheeeecccC-cccccCHHH-hhhcchhhhhhcccc
Confidence            4555555543 45544444433 3445555555553 443322222 223666777766663

>PLN03210 Resistant to P

Probab=97.66  E-value=4.4e-05  Score=76.57  Aligned_cols=84  Identities=19%  Similarity=0.280  Sum_probs=36.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|+.|++++|..+..-.  .. ..+++|+.|++++|..+..     +....++|+.|+++++ .++.  +..-...++
T Consensus       801 L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~  869 (1153)
T PLN03210        801 LHKLEHLEIENCINLETLP--TG-INLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRT-GIEE--VPWWIEKFS  869 (1153)
T ss_pred             CCCCCEEECCCCCCcCeeC--CC-CCccccCEEECCCCCcccc-----ccccccccCEeECCCC-CCcc--ChHHHhcCC
Confidence            3555555555554332210  00 0245555555555543321     1112234555555553 3321  111112466


Q ss_pred             CccEEecCCCCCCCH
Q 023841          193 ELESLNLTRYVNMIL  207 (276)
Q Consensus       193 ~L~~L~l~~c~~it~  207 (276)
                      +|+.|++++|.+++.
T Consensus       870 ~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        870 NLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCEEECCCCCCcCc
Confidence            677777777665543

syringae 6; Provisional

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=9.9e-06  Score=67.02  Aligned_cols=198  Identities=15%  Similarity=0.122  Sum_probs=120.1

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ..+...+++++......++..+.++. .+.|.|+.|+++. +.+... ...+    +.+..+|+.|-+.+ +.++.....
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~il-e~lP~l~~LNls~-N~L~s~-I~~l----p~p~~nl~~lVLNg-T~L~w~~~~  139 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAIL-EQLPALTTLNLSC-NSLSSD-IKSL----PLPLKNLRVLVLNG-TGLSWTQST  139 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHH-hcCccceEeeccC-CcCCCc-cccC----cccccceEEEEEcC-CCCChhhhh
Confidence            33445666777776655555555555 7788888888875 333221 1111    23457888888888 588888888


Q ss_pred             HHHhhCCCCCeEeccCC----CCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHH-
Q 023841          134 IISSTCPELKVFSIYWN----VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL-  208 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~----~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~-  208 (276)
                      ......|.+++|+++.+    -+++|+..+.+.   +.++.|+...|...-+..+..+.+.+|++..+.+..|+--|.. 
T Consensus       140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s---~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~  216 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS---TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS  216 (418)
T ss_pred             hhhhcchhhhhhhhccchhhhhccccccccccc---hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence            88888888888877754    134444444432   4567777777766667777777888899999988888422221 


Q ss_pred             --H--------HHHHHhcCchhhHHH-HHcCCCccceecccccCCCCCcc----eeEEEeeccCCCCceee
Q 023841          209 --G--------LFYIWSNNILLMSEF-IYHGIRFFQAVQINSSNGGDHLA----FAYIIETNTYKHGKEKH  264 (276)
Q Consensus       209 --~--------l~~l~~~~~~~l~~~-~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~~~~~L~~l~  264 (276)
                        +        +.-++..+......+ .+.+++.|..+++...++.|...    ...++  +.+++++-|+
T Consensus       217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI--aRL~~v~vLN  285 (418)
T KOG2982|consen  217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI--ARLTKVQVLN  285 (418)
T ss_pred             cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE--eeccceEEec
Confidence              1        111121222211111 35678888888887777666521    12333  5566666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.61  E-value=7.8e-05  Score=38.53  Aligned_cols=22  Identities=41%  Similarity=0.821  Sum_probs=8.8

Q ss_pred             CCCcEEecCCCCCCCHHHHHHH
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLI  187 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l  187 (276)
                      ++|++|++++|..|||.++..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            3344444444444444444333

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.55  E-value=0.0021  Score=52.96  Aligned_cols=177  Identities=12%  Similarity=0.076  Sum_probs=97.3

Q ss_pred             CCCCccEEecCCccCc--chhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEecCCC
Q 023841           55 YPSLWLVIDLREMNNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNLNGC  124 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~--------~~~~~~L~~L~l~~c  124 (276)
                      .|+.++.++++.....  ....+..+ +++...|++|.+++|. +...+-..|....        ..+-|.|+.+.+.. 
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~-is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-  166 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDL-ISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-  166 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHH-HhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-
Confidence            3556666666654322  11222222 2455666666666643 2222222222111        23346666666655 


Q ss_pred             CCCCHHH---HHHHHhhCCCCCeEeccCCCCcCHHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCc
Q 023841          125 QKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQHLV----KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQEL  194 (276)
Q Consensus       125 ~~l~~~~---~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~----~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L  194 (276)
                      +++....   .....+.-.+|+++.+..+ .|..+++..++    .+|++|+.|++..+ .+|-.+-..++.   ..+.|
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~l  244 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchh
Confidence            3333322   2222232346777777764 67777665553    46888999999885 666555555544   35668


Q ss_pred             cEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCC
Q 023841          195 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  244 (276)
Q Consensus       195 ~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~  244 (276)
                      +.|++..| .++.+|...+.+       .+.-.-.++|..|..+|+....
T Consensus       245 rEL~lnDC-lls~~G~~~v~~-------~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         245 RELRLNDC-LLSNEGVKSVLR-------RFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhccccch-hhccccHHHHHH-------HhhhhcCCCccccccchhhhcC
Confidence            88999998 677777666543       2233445667777777776543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.44  E-value=0.0001  Score=44.35  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=26.8

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHH
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRT   51 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~   51 (276)
                      |.++| +|++.+||++|+..++..+++||+.|++.
T Consensus         3 ~~~LP-~~il~~Il~~l~~~~~~~l~~vsk~~~~~   36 (48)
T PF00646_consen    3 LSDLP-DEILQEILSYLDPKDLLRLSLVSKRWRSL   36 (48)
T ss_dssp             HHHS--HHHHHHHHHTS-HHHHHHHCTT-HHHHHH
T ss_pred             HHHCC-HHHHHHHHHHCcHHHHHHHHHHhhHHHHH
Confidence            45555 58999999999999999999999997764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.43  E-value=0.00073  Score=55.57  Aligned_cols=15  Identities=7%  Similarity=0.147  Sum_probs=9.1

Q ss_pred             ccCCCCceeeeecce
Q 023841          255 NTYKHGKEKHIIETI  269 (276)
Q Consensus       255 ~~~~~L~~l~~~~~~  269 (276)
                      ...|+|++|++.+|.
T Consensus       239 ~~W~~lrEL~lnDCl  253 (388)
T COG5238         239 CEWNLLRELRLNDCL  253 (388)
T ss_pred             cccchhhhccccchh
Confidence            345566666666664

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.33  E-value=0.00019  Score=41.37  Aligned_cols=37  Identities=19%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             HHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCcc
Q 023841           23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL   60 (276)
Q Consensus        23 p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~   60 (276)
                      +|++..||.+|+..|+.++..||+.|+. +...+..|.
T Consensus         3 ~~ll~~I~~~l~~~d~~~~~~vc~~~~~-~~~~~~~~~   39 (41)
T smart00256        3 DEILEEILSKLPPKDLLRLRKVSRRWRS-LIDSHDFWF   39 (41)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcChhhhh
Confidence            4799999999999999999999999665 455555553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.89  E-value=0.00049  Score=62.18  Aligned_cols=128  Identities=18%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCCeEeccCCCCcCHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIG  157 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~  157 (276)
                      ...+.|..|++++ +++.+.+...+......+-+.++.|.+..| .++.++...++..   ++.++.++++.| .+...+
T Consensus       112 ~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g  188 (478)
T KOG4308|consen  112 KTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELG  188 (478)
T ss_pred             cccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-ccchhh
Confidence            5667777788877 466677777777766443345666667665 5555554443332   445555666554 232333


Q ss_pred             HHHHHHh-------CCCCcEEecCCCCCCCHHHHHHHHhc---CCC-ccEEecCCCCCCCHHHHHHH
Q 023841          158 IQHLVKN-------CKHIIDLNLSGCKNLLDKSLQLIADN---YQE-LESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       158 l~~l~~~-------~~~L~~L~l~~c~~ltd~~~~~l~~~---~~~-L~~L~l~~c~~it~~~l~~l  213 (276)
                      ...+.+.       -.++++|++++| .+++.....+...   .++ +..|++..+ .+.|.++..+
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L  253 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKL  253 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHH
Confidence            3333222       224566666665 4444444433322   222 333444443 4444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.87  E-value=0.00011  Score=69.45  Aligned_cols=107  Identities=19%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             CccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH--
Q 023841           85 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV--  162 (276)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~--  162 (276)
                      .|+.|.+.+ +.++|..+..+..     +++|+-|++++ +.++...-..+. +++.|++|+|+|+ .++.-. ..++  
T Consensus       360 ~Lq~Lylan-N~Ltd~c~p~l~~-----~~hLKVLhLsy-NrL~~fpas~~~-kle~LeeL~LSGN-kL~~Lp-~tva~~  429 (1081)
T KOG0618|consen  360 ALQELYLAN-NHLTDSCFPVLVN-----FKHLKVLHLSY-NRLNSFPASKLR-KLEELEELNLSGN-KLTTLP-DTVANL  429 (1081)
T ss_pred             HHHHHHHhc-Ccccccchhhhcc-----ccceeeeeecc-cccccCCHHHHh-chHHhHHHhcccc-hhhhhh-HHHHhh
Confidence            455555555 4666666665543     47777777777 444432222222 2666777777765 332211 1111  


Q ss_pred             -------------------HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          163 -------------------KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       163 -------------------~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                                         ..+++|+.+|++.+ .++.-.+..... -|+|++||++|..
T Consensus       430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence                               13456777777653 554444333221 1567777777754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.80  E-value=0.00017  Score=65.07  Aligned_cols=122  Identities=22%  Similarity=0.338  Sum_probs=80.4

Q ss_pred             ccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCC----CCeEeccCCCCcCHHHHHHH
Q 023841           86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE----LKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~----L~~L~L~~~~~l~~~~l~~l  161 (276)
                      +.+|.+.+| .+.+.+.+.++... ...+.|..|++++ +++.+++...+....+.    |+.|++..| .+++.+...+
T Consensus        89 l~~L~L~~~-~l~~~~~~~l~~~l-~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANN-RLGDRGAEELAQAL-KTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhC-ccccchHHHHHHHh-cccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence            677777774 67777777777766 3457788888888 47778888777776554    456677766 6777666555


Q ss_pred             HHh---CCCCcEEecCCCCCCCHHHHHHHHhc-------CCCccEEecCCCCCCCHHHHHHH
Q 023841          162 VKN---CKHIIDLNLSGCKNLLDKSLQLIADN-------YQELESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       162 ~~~---~~~L~~L~l~~c~~ltd~~~~~l~~~-------~~~L~~L~l~~c~~it~~~l~~l  213 (276)
                      +..   +..++.++++.| .+.+.+...+.+.       ..++++|++.+| .+|+.....+
T Consensus       165 ~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l  224 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALL  224 (478)
T ss_pred             HHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHH
Confidence            433   456777777776 3445555555443       234788888887 6776555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.78  E-value=0.0011  Score=62.85  Aligned_cols=116  Identities=21%  Similarity=0.381  Sum_probs=71.8

Q ss_pred             ccCCCccEEeccCC--CCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHH--HHHHHh------------------h
Q 023841           81 PRYRHVREINLEFA--QDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG--IEIISS------------------T  138 (276)
Q Consensus        81 ~~~~~L~~L~l~~~--~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~------------------~  138 (276)
                      ...++||.|++++.  +.+++..+..+        +.|++|.+|| ++++.-.  +.....                  .
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kl--------e~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~  450 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKL--------EELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQ  450 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhch--------HHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhh
Confidence            56789999999985  34666555544        6799999998 5555422  111110                  3


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC-HHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL-DKSLQLIADNYQELESLNLTRYVNMILLGLF  211 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt-d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~  211 (276)
                      .++|+.+|++ |.+++...+...... |+|++|+++|+.++. |...-   ..+.++...++.-. +.+|....
T Consensus       451 l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l---~~l~~l~~~~i~~~-~~~d~~~n  518 (1081)
T KOG0618|consen  451 LPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL---KVLKSLSQMDITLN-NTPDGNVN  518 (1081)
T ss_pred             cCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcccccchhhh---HHhhhhhheecccC-CCCccccc
Confidence            5778999999 557876666554422 799999999986432 22221   12445555555542 45555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.0013  Score=54.77  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             EEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH-HHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCC
Q 023841           88 EINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK  166 (276)
Q Consensus        88 ~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~  166 (276)
                      -|.+.+|.--+...+..+.+.|    ..++++++.+ +.+++ ..+.++...+|.|+.|+++.+ .++.. +..++....
T Consensus        49 llvln~~~id~~gd~~~~~~~~----~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~  121 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSV----TDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLK  121 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHh----hhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCccccc
Confidence            3444444333344455555555    6666666666 45444 345566666666666666632 33221 223322344


Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhcCCCccEE
Q 023841          167 HIIDLNLSGCKNLLDKSLQLIADNYQELESL  197 (276)
Q Consensus       167 ~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L  197 (276)
                      +|+.|.+.+ ..+.+..........|.++.|
T Consensus       122 nl~~lVLNg-T~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen  122 NLRVLVLNG-TGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             ceEEEEEcC-CCCChhhhhhhhhcchhhhhh
Confidence            666666666 355555544444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.48  E-value=0.0028  Score=31.87  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=12.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHH
Q 023841          191 YQELESLNLTRYVNMILLGLFYIW  214 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~~~l~~l~  214 (276)
                      |++|++|+|++| .++++++..++
T Consensus         1 ~~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCCEEEccCC-cCCHHHHHHhC
Confidence            356666777666 46666666654

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.00085  Score=54.67  Aligned_cols=86  Identities=23%  Similarity=0.357  Sum_probs=55.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCC--CCHHHHHHHHh
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKN--LLDKSLQLIAD  189 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~--ltd~~~~~l~~  189 (276)
                      +++|++|.++....-...++..++..||+|++|.++++ .+.+ ..+..+. .+++|..|+++.|..  ++|.. ..++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dyr-e~vf~  140 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDYR-EKVFL  140 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-hhcchhhhhcccCCccccccHH-HHHHH
Confidence            47888888887433445567778888899999999886 4543 3333333 677899999998843  22222 22333


Q ss_pred             cCCCccEEecCC
Q 023841          190 NYQELESLNLTR  201 (276)
Q Consensus       190 ~~~~L~~L~l~~  201 (276)
                      -.|+|+.|+-..
T Consensus       141 ll~~L~~LD~~d  152 (260)
T KOG2739|consen  141 LLPSLKYLDGCD  152 (260)
T ss_pred             Hhhhhccccccc
Confidence            468888877443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.25  E-value=0.00016  Score=45.91  Aligned_cols=13  Identities=31%  Similarity=0.452  Sum_probs=7.6

Q ss_pred             cCCCccEEecCCC
Q 023841          190 NYQELESLNLTRY  202 (276)
Q Consensus       190 ~~~~L~~L~l~~c  202 (276)
                      .+++|++|++++|
T Consensus        47 ~l~~L~~L~l~~N   59 (61)
T PF13855_consen   47 NLPNLRYLDLSNN   59 (61)
T ss_dssp             TSTTESEEEETSS
T ss_pred             CCCCCCEEeCcCC
Confidence            4566666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.12  E-value=0.00027  Score=44.88  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=16.8

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                      +++|++|+++++ .++.-.-. ...++++|++|++++|
T Consensus        24 l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   24 LPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             GTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred             CCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence            455555555543 33211111 1235566666666654

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.11  E-value=0.0058  Score=35.90  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=17.4

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       167 ~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      +|++|+++++ .|++  +.....++++|+.|+++++ .++
T Consensus         2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence            4566666654 4443  2221234666666666665 444

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.00  E-value=0.0039  Score=52.17  Aligned_cols=37  Identities=5%  Similarity=-0.066  Sum_probs=25.8

Q ss_pred             CccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          230 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       230 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      ..|..+++..+++..-..+..+   +..|-|+.+.+++.|
T Consensus       374 YSLvnLDl~~N~Ie~ldeV~~I---G~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  374 YSLVNLDLSSNQIEELDEVNHI---GNLPCLETLRLTGNP  410 (490)
T ss_pred             hhheeccccccchhhHHHhccc---ccccHHHHHhhcCCC
Confidence            4577778877776655445444   578888888887765

>PLN03150 hypothetical protein; Provisional

Probab=95.89  E-value=0.014  Score=55.09  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=16.1

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                      +++|+.|+|+++ .++...-..+. .+++|+.|+++++
T Consensus       465 l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N  500 (623)
T PLN03150        465 ITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGN  500 (623)
T ss_pred             CCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCC
Confidence            455555555544 23222112222 4555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.87  E-value=0.001  Score=61.74  Aligned_cols=95  Identities=13%  Similarity=0.091  Sum_probs=47.3

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC-----CCCCHHH--HHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY-----VNMILLG--LFYIWSNNILLMSEFIYHGIRFFQAVQIN  238 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c-----~~it~~~--l~~l~~~~~~~l~~~~~~~~~~L~~l~l~  238 (276)
                      +.|++|+|+++ .+++..  .+ +.|++|++|||+++     +.++..|  +..+.-++....+-.....+++|..|+++
T Consensus       187 ~ale~LnLshN-k~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  187 PALESLNLSHN-KFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHhhhhccchh-hhhhhH--HH-HhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            45677777764 343333  22 23667777777664     1122222  11111122222222244566778888888


Q ss_pred             ccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841          239 SSNGGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                      |+.+.+...+..+   ..+-.|+.|.+.+
T Consensus       263 yNll~~hseL~pL---wsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  263 YNLLSEHSELEPL---WSLSSLIVLWLEG  288 (1096)
T ss_pred             HhhhhcchhhhHH---HHHHHHHHHhhcC
Confidence            8887766444333   2334455555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.86  E-value=0.0074  Score=30.26  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=10.4

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHH
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLIA  188 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l~  188 (276)
                      ++|++|++++| .|+++++..|+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHhC
Confidence            45555555554 35555555443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.0047  Score=51.12  Aligned_cols=117  Identities=20%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQH  160 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~  160 (276)
                      .+.+.++|++.+| .++|..   |...    ++.|+-|.++- ++|+.  ++.+.. |.+|++|.|..+ .|.+ +.+..
T Consensus        17 dl~~vkKLNcwg~-~L~DIs---ic~k----Mp~lEVLsLSv-NkIss--L~pl~r-CtrLkElYLRkN-~I~sldEL~Y   83 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDIS---ICEK----MPLLEVLSLSV-NKISS--LAPLQR-CTRLKELYLRKN-CIESLDELEY   83 (388)
T ss_pred             HHHHhhhhcccCC-CccHHH---HHHh----cccceeEEeec-ccccc--chhHHH-HHHHHHHHHHhc-ccccHHHHHH
Confidence            3567888999887 555543   2232    48899999988 56655  444444 899999999876 4544 33444


Q ss_pred             HHHhCCCCcEEecCCCCCCC---HHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          161 LVKNCKHIIDLNLSGCKNLL---DKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~lt---d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                       .+++|+|+.|.|-.+....   ..-=..+.+-+|+|++||  + ..+|.+.+.....
T Consensus        84 -LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--n-v~VteeEle~ALr  137 (388)
T KOG2123|consen   84 -LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--N-VPVTEEELEEALR  137 (388)
T ss_pred             -HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--C-ccccHHHHHHHHh
Confidence             4589999999887543322   222223455689999987  2 3577766665444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.40  E-value=0.0095  Score=51.63  Aligned_cols=77  Identities=10%  Similarity=0.087  Sum_probs=48.7

Q ss_pred             HhcCCCccEEecCCCCCCCHH---HHHHHHh--------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeecc
Q 023841          188 ADNYQELESLNLTRYVNMILL---GLFYIWS--------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNT  256 (276)
Q Consensus       188 ~~~~~~L~~L~l~~c~~it~~---~l~~l~~--------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  256 (276)
                      ++.+|+|++|++++. .+|..   +++.++.        +......+..+.|...|+.|++..+.++... . ..+  +.
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~-~aF--~~  344 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-P-GAF--QT  344 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-c-ccc--cc
Confidence            346899999999996 67652   2322222        2233344567788899999999888775542 2 122  45


Q ss_pred             CCCCceeeeecce
Q 023841          257 YKHGKEKHIIETI  269 (276)
Q Consensus       257 ~~~L~~l~~~~~~  269 (276)
                      ...|.+|++-..+
T Consensus       345 ~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  345 LFSLSTLNLLSNP  357 (498)
T ss_pred             cceeeeeehccCc
Confidence            5677777776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.34  E-value=0.0028  Score=58.06  Aligned_cols=187  Identities=14%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      +++++.+++.+....+.   -.+....+|..|.+++.    .+.+..|-... ..+.+|..+++|. ++++-  +-....
T Consensus       174 ~LqtL~Ls~NPL~hfQL---rQLPsmtsL~vLhms~T----qRTl~N~Ptsl-d~l~NL~dvDlS~-N~Lp~--vPecly  242 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQL---RQLPSMTSLSVLHMSNT----QRTLDNIPTSL-DDLHNLRDVDLSE-NNLPI--VPECLY  242 (1255)
T ss_pred             hhhhhhcCCChhhHHHH---hcCccchhhhhhhcccc----cchhhcCCCch-hhhhhhhhccccc-cCCCc--chHHHh
Confidence            45667777655332221   11234455666666652    22222222111 1247788888887 45543  222234


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC--HHHHHHHHhcCCCccEEecCCCCCCCHHHH----H
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL--DKSLQLIADNYQELESLNLTRYVNMILLGL----F  211 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~~~~L~~L~l~~c~~it~~~l----~  211 (276)
                      ..++|+.|+|+++ .++.-.+.  ...-.+|++|+++++ .++  ...+   . .++.|+.|.+... +++-+|+    .
T Consensus       243 ~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSrN-QLt~LP~av---c-KL~kL~kLy~n~N-kL~FeGiPSGIG  313 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSRN-QLTVLPDAV---C-KLTKLTKLYANNN-KLTFEGIPSGIG  313 (1255)
T ss_pred             hhhhhheeccCcC-ceeeeecc--HHHHhhhhhhccccc-hhccchHHH---h-hhHHHHHHHhccC-cccccCCccchh
Confidence            4788999999976 45432110  012247888888885 443  1221   1 2566776666553 4443332    2


Q ss_pred             HHHh-------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          212 YIWS-------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       212 ~l~~-------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .+.+       ++..-+.+--+-.|.+|+.|.++.+.+..-   ...+  .-+|.|+.|+++..+
T Consensus       314 KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTL---PeaI--HlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITL---PEAI--HLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeec---hhhh--hhcCCcceeeccCCc
Confidence            2211       111111222345677888888877774322   1223  456778888887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.27  E-value=0.054  Score=52.04  Aligned_cols=94  Identities=19%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      ++|+.|.+.+ ++++.     +    +...++|++|++++ +.++.-     ....++|+.|+++++ .++     .+..
T Consensus       222 ~~L~~L~L~~-N~Lt~-----L----P~lp~~Lk~LdLs~-N~LtsL-----P~lp~sL~~L~Ls~N-~L~-----~Lp~  279 (788)
T PRK15387        222 AHITTLVIPD-NNLTS-----L----PALPPELRTLEVSG-NQLTSL-----PVLPPGLLELSIFSN-PLT-----HLPA  279 (788)
T ss_pred             cCCCEEEccC-CcCCC-----C----CCCCCCCcEEEecC-CccCcc-----cCcccccceeeccCC-chh-----hhhh
Confidence            4677777776 34432     1    12247788888877 355531     122456777777765 332     2222


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      ..++|+.|+++++ .++.     +....++|+.|+++++ .++
T Consensus       280 lp~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N-~L~  315 (788)
T PRK15387        280 LPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDN-QLA  315 (788)
T ss_pred             chhhcCEEECcCC-cccc-----ccccccccceeECCCC-ccc
Confidence            2346777777775 3431     1222466777777775 444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.21  E-value=0.019  Score=33.66  Aligned_cols=13  Identities=38%  Similarity=0.401  Sum_probs=5.8

Q ss_pred             hCCCCcEEecCCC
Q 023841          164 NCKHIIDLNLSGC  176 (276)
Q Consensus       164 ~~~~L~~L~l~~c  176 (276)
                      ++++|+.|+++++
T Consensus        22 ~l~~L~~L~l~~N   34 (44)
T PF12799_consen   22 NLPNLETLNLSNN   34 (44)
T ss_dssp             TCTTSSEEEETSS
T ss_pred             CCCCCCEEEecCC
Confidence            3444444444443

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.02  E-value=0.027  Score=54.92  Aligned_cols=18  Identities=6%  Similarity=-0.099  Sum_probs=11.3

Q ss_pred             cCCCCceeeeecceeccc
Q 023841          256 TYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       256 ~~~~L~~l~~~~~~~~~~  273 (276)
                      -.|||+.+.+..|..+.|
T Consensus       768 f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             ccCcccEEEEeccccccc
Confidence            346677777766666554

>PLN03150 hypothetical protein; Provisional

Probab=94.96  E-value=0.034  Score=52.43  Aligned_cols=81  Identities=17%  Similarity=0.107  Sum_probs=44.4

Q ss_pred             ccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCcc
Q 023841          116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE  195 (276)
Q Consensus       116 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~  195 (276)
                      ++.|+++++ .+....-..+. .+++|+.|+|+++ .++...-..+ ..+++|+.|+++++ .++...-..+. ++++|+
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESLG-QLTSLR  493 (623)
T ss_pred             EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHHh-cCCCCC
Confidence            555666653 33321112222 3677888888765 3432211222 36778888888876 44422222232 477888


Q ss_pred             EEecCCC
Q 023841          196 SLNLTRY  202 (276)
Q Consensus       196 ~L~l~~c  202 (276)
                      .|+++++
T Consensus       494 ~L~Ls~N  500 (623)
T PLN03150        494 ILNLNGN  500 (623)
T ss_pred             EEECcCC
Confidence            8888776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.95  E-value=0.038  Score=53.01  Aligned_cols=12  Identities=8%  Similarity=0.086  Sum_probs=8.8

Q ss_pred             CCCccEEeccCC
Q 023841           83 YRHVREINLEFA   94 (276)
Q Consensus        83 ~~~L~~L~l~~~   94 (276)
                      .++|++|+++++
T Consensus       241 p~~Lk~LdLs~N  252 (788)
T PRK15387        241 PPELRTLEVSGN  252 (788)
T ss_pred             CCCCcEEEecCC
Confidence            467888888774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.53  E-value=0.017  Score=48.41  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             ccCCCccEEeccCCCCCc--HHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHH
Q 023841           81 PRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI  158 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~--~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l  158 (276)
                      -....|+.+++++ +.++  |+.++.        .|.++.|++|. +.+...+  .++ .+++|+.|+|+++ .++  .+
T Consensus       281 dTWq~LtelDLS~-N~I~~iDESvKL--------~Pkir~L~lS~-N~i~~v~--nLa-~L~~L~~LDLS~N-~Ls--~~  344 (490)
T KOG1259|consen  281 DTWQELTELDLSG-NLITQIDESVKL--------APKLRRLILSQ-NRIRTVQ--NLA-ELPQLQLLDLSGN-LLA--EC  344 (490)
T ss_pred             chHhhhhhccccc-cchhhhhhhhhh--------ccceeEEeccc-cceeeeh--hhh-hcccceEeecccc-hhH--hh
Confidence            3455677777777 3332  222222        37788888887 4555532  332 3677888888764 221  12


Q ss_pred             HHHHHhCCCCcEEecCC
Q 023841          159 QHLVKNCKHIIDLNLSG  175 (276)
Q Consensus       159 ~~l~~~~~~L~~L~l~~  175 (276)
                      ..+-..+-|++.|.+++
T Consensus       345 ~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  345 VGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhHhhhcCEeeeehhh
Confidence            22233344555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.47  E-value=0.023  Score=53.21  Aligned_cols=124  Identities=19%  Similarity=0.281  Sum_probs=70.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCC----------CCcEEecCCCCCCC--
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK----------HIIDLNLSGCKNLL--  180 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~----------~L~~L~l~~c~~lt--  180 (276)
                      +..|+.|.+.+|+--+..|+..+-.   .|++|--.   +- -+.+..+...|-          .|...+.+++ .++  
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~---~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~m  179 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRH---QLEKLICH---NS-LDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLM  179 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHH---hhhhhhhh---cc-HHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhH
Confidence            4778888888875444445544433   34444222   11 223333333331          3455555553 443  


Q ss_pred             HHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCC
Q 023841          181 DKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG  260 (276)
Q Consensus       181 d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L  260 (276)
                      |+.+..+    |.|+.|+|+++ ++++..               .+..|+.|++|+++|+.+.....+    ...+|. |
T Consensus       180 D~SLqll----~ale~LnLshN-k~~~v~---------------~Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L  234 (1096)
T KOG1859|consen  180 DESLQLL----PALESLNLSHN-KFTKVD---------------NLRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-L  234 (1096)
T ss_pred             HHHHHHH----HHhhhhccchh-hhhhhH---------------HHHhcccccccccccchhcccccc----chhhhh-h
Confidence            5665544    78999999996 666543               234567788999988886544222    223455 7


Q ss_pred             ceeeeecce
Q 023841          261 KEKHIIETI  269 (276)
Q Consensus       261 ~~l~~~~~~  269 (276)
                      +.|++++.+
T Consensus       235 ~~L~lrnN~  243 (1096)
T KOG1859|consen  235 QLLNLRNNA  243 (1096)
T ss_pred             eeeeecccH
Confidence            777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.98  E-value=0.2  Score=48.25  Aligned_cols=11  Identities=0%  Similarity=-0.145  Sum_probs=6.9

Q ss_pred             CCCceeeeecc
Q 023841          258 KHGKEKHIIET  268 (276)
Q Consensus       258 ~~L~~l~~~~~  268 (276)
                      ++|+.|++.+|
T Consensus       367 ~~L~~LdLs~N  377 (754)
T PRK15370        367 PTITTLDVSRN  377 (754)
T ss_pred             CCcCEEECCCC
Confidence            46666666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.75  E-value=0.027  Score=46.78  Aligned_cols=106  Identities=22%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNY  191 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~  191 (276)
                      +.+.++|++-+| .++|-.   ++..+|.|+.|.|+-+ .|+  .+..+. .|++|++|.|..+ .|.+ ..+..+ .++
T Consensus        18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvN-kIs--sL~pl~-rCtrLkElYLRkN-~I~sldEL~YL-knl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVN-KIS--SLAPLQ-RCTRLKELYLRKN-CIESLDELEYL-KNL   87 (388)
T ss_pred             HHHhhhhcccCC-CccHHH---HHHhcccceeEEeecc-ccc--cchhHH-HHHHHHHHHHHhc-ccccHHHHHHH-hcC
Confidence            467888999897 777743   4566899999999854 343  233333 7999999999885 5654 334444 469


Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecc
Q 023841          192 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI  237 (276)
Q Consensus       192 ~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l  237 (276)
                      |+|+.|.|...+.....|=.+         +...+..+++|+.|+-
T Consensus        88 psLr~LWL~ENPCc~~ag~nY---------R~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNY---------RRKVLRVLPNLKKLDN  124 (388)
T ss_pred             chhhhHhhccCCcccccchhH---------HHHHHHHcccchhccC
Confidence            999999997755444433222         2345666677766553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.25  E-value=0.038  Score=45.27  Aligned_cols=62  Identities=29%  Similarity=0.416  Sum_probs=46.7

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      +|+|+.|.++.+..--..++..++..+|+|++|+++++ .+.+ ..+.-+. ..++|..|++..|
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~-~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK-ELENLKSLDLFNC  126 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-hhcchhhhhcccC
Confidence            67899999996544445668888889999999999995 6654 2232232 4778999999998

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.15  E-value=0.18  Score=26.23  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=12.2

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHh
Q 023841          114 QDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      ++|++|++++ +.+.++|+.++++
T Consensus         2 ~~L~~LdL~~-N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSN-NKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCC-CCCCHHHHHHHHH
Confidence            3455555555 3555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=92.72  E-value=0.042  Score=50.72  Aligned_cols=86  Identities=22%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC--HHHHHHHHhc
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL--DKSLQLIADN  190 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~  190 (276)
                      +.+|++|++++ +++....+..+.. +.+|+.|++++. .-|-..+..-...+.||..++++++ +++  .+.+.    +
T Consensus       172 L~~LqtL~Ls~-NPL~hfQLrQLPs-mtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly----~  243 (1255)
T KOG0444|consen  172 LSMLQTLKLSN-NPLNHFQLRQLPS-MTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLY----K  243 (1255)
T ss_pred             HhhhhhhhcCC-ChhhHHHHhcCcc-chhhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc-CCCcchHHHh----h
Confidence            35677777777 4555544444332 445666666643 2221111111123456777777764 443  23332    2


Q ss_pred             CCCccEEecCCCCCCCH
Q 023841          191 YQELESLNLTRYVNMIL  207 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~  207 (276)
                      .++|+.|+|++. .+|+
T Consensus       244 l~~LrrLNLS~N-~ite  259 (1255)
T KOG0444|consen  244 LRNLRRLNLSGN-KITE  259 (1255)
T ss_pred             hhhhheeccCcC-ceee
Confidence            466777777774 5554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.53  E-value=0.12  Score=50.56  Aligned_cols=18  Identities=6%  Similarity=0.027  Sum_probs=9.6

Q ss_pred             HcCCCccceecccccCCC
Q 023841          226 YHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~  243 (276)
                      ...+++|+.|.+..+.+.
T Consensus       713 ~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  713 LGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cccccCcceEEEEcCCCc
Confidence            344455666666555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.32  E-value=0.35  Score=42.95  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=39.4

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..|.++++|++++| .++.     +. ..   .++|++|.+++|..++... ..   ..++|+.|++++|..+.     .
T Consensus        49 ~~~~~l~~L~Is~c-~L~s-----LP-~L---P~sLtsL~Lsnc~nLtsLP-~~---LP~nLe~L~Ls~Cs~L~-----s  109 (426)
T PRK15386         49 EEARASGRLYIKDC-DIES-----LP-VL---PNELTEITIENCNNLTTLP-GS---IPEGLEKLTVCHCPEIS-----G  109 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcc-----cC-CC---CCCCcEEEccCCCCcccCC-ch---hhhhhhheEccCccccc-----c
Confidence            34677888888876 3221     11 11   2467888887776542211 01   12467777777765442     1


Q ss_pred             HHHhCCCCcEEecCC
Q 023841          161 LVKNCKHIIDLNLSG  175 (276)
Q Consensus       161 l~~~~~~L~~L~l~~  175 (276)
                      +.   +.|+.|++.+
T Consensus       110 LP---~sLe~L~L~~  121 (426)
T PRK15386        110 LP---ESVRSLEIKG  121 (426)
T ss_pred             cc---cccceEEeCC
Confidence            21   3566666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.31  E-value=0.041  Score=43.53  Aligned_cols=84  Identities=20%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHH-HH-HHHhc
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKS-LQ-LIADN  190 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~-~~-~l~~~  190 (276)
                      ++|..|.+++ +.|+.-.- .+....|+|..|.|.++ ++.. ..+..++ .||.|+.|.+-++ .+++.. .. ++...
T Consensus        64 ~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pLa-~~p~L~~Ltll~N-pv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   64 PRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPLA-SCPKLEYLTLLGN-PVEHKKNYRLYVLYK  138 (233)
T ss_pred             cccceEEecC-Ccceeecc-chhhhccccceEEecCc-chhhhhhcchhc-cCCccceeeecCC-chhcccCceeEEEEe
Confidence            5566666665 44443110 12333556666666654 2222 1233344 5777777776663 333221 11 12234


Q ss_pred             CCCccEEecCCC
Q 023841          191 YQELESLNLTRY  202 (276)
Q Consensus       191 ~~~L~~L~l~~c  202 (276)
                      .|+|+.||+.+.
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            788888888774

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=92.12  E-value=0.29  Score=25.46  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=11.5

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHh
Q 023841          167 HIIDLNLSGCKNLLDKSLQLIAD  189 (276)
Q Consensus       167 ~L~~L~l~~c~~ltd~~~~~l~~  189 (276)
                      +|+.|+|+++ .++++|...+++
T Consensus         3 ~L~~LdL~~N-~i~~~G~~~L~~   24 (28)
T smart00368        3 SLRELDLSNN-KLGDEGARALAE   24 (28)
T ss_pred             ccCEEECCCC-CCCHHHHHHHHH
Confidence            4555555553 555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=91.77  E-value=0.0054  Score=47.19  Aligned_cols=84  Identities=19%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCC-CCHHHHHHHHhcCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN-LLDKSLQLIADNYQ  192 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~-ltd~~~~~l~~~~~  192 (276)
                      .+++.|.+|+ ++++...- .++. +.+|+.|+++++ .+.+ .-..++ .++.|++|+++-+.. +...|+    .++|
T Consensus        33 s~ITrLtLSH-NKl~~vpp-nia~-l~nlevln~~nn-qie~-lp~~is-sl~klr~lnvgmnrl~~lprgf----gs~p  102 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPP-NIAE-LKNLEVLNLSNN-QIEE-LPTSIS-SLPKLRILNVGMNRLNILPRGF----GSFP  102 (264)
T ss_pred             hhhhhhhccc-CceeecCC-cHHH-hhhhhhhhcccc-hhhh-cChhhh-hchhhhheecchhhhhcCcccc----CCCc
Confidence            4455555665 34332110 1111 456777777653 2211 111222 566777777765311 112222    2467


Q ss_pred             CccEEecCCCCCCCHH
Q 023841          193 ELESLNLTRYVNMILL  208 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~  208 (276)
                      .||.||+++. ++++.
T Consensus       103 ~levldltyn-nl~e~  117 (264)
T KOG0617|consen  103 ALEVLDLTYN-NLNEN  117 (264)
T ss_pred             hhhhhhcccc-ccccc
Confidence            7888888774 56553

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=90.46  E-value=0.27  Score=42.96  Aligned_cols=38  Identities=13%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             CCCCCCcHHHHHHHhcCC-CHhhhHHHhccCHHHHHHHhc
Q 023841           16 TWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS   54 (276)
Q Consensus        16 ~~~~~~~p~il~~if~~L-~~~~l~~~~~v~~~~~~~~~~   54 (276)
                      +|++.+ +|++..|..+| ...|+.+...||+.|+.++..
T Consensus         3 ~Ws~Lp-~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLP-EELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCC-HHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            699977 78999999999 788999999999998886654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=90.37  E-value=0.56  Score=42.70  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC-----HHHHHH
Q 023841          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL-----DKSLQL  186 (276)
Q Consensus       112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt-----d~~~~~  186 (276)
                      +.+.+.++++++..-..-+++..+++..|+|..|+|+++...-+...+.-.-....|++|-+.|+.-.+     .+-+.+
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~  295 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA  295 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence            458899999998544555778889999999999999986222222222222235578999998853322     455667


Q ss_pred             HHhcCCCccEEe
Q 023841          187 IADNYQELESLN  198 (276)
Q Consensus       187 l~~~~~~L~~L~  198 (276)
                      +.+.+|+|..||
T Consensus       296 i~~~FPKL~~LD  307 (585)
T KOG3763|consen  296 IRELFPKLLRLD  307 (585)
T ss_pred             HHHhcchheeec
Confidence            777889988887

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.36  E-value=0.4  Score=42.56  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +.....|+++++...      .+. .--++|++|.+.+|..++.     +....   .++|++|++++|..+..      
T Consensus        51 ~~~l~~L~Is~c~L~------sLP-~LP~sLtsL~Lsnc~nLts-----LP~~L---P~nLe~L~Ls~Cs~L~s------  109 (426)
T PRK15386         51 ARASGRLYIKDCDIE------SLP-VLPNELTEITIENCNNLTT-----LPGSI---PEGLEKLTVCHCPEISG------  109 (426)
T ss_pred             hcCCCEEEeCCCCCc------ccC-CCCCCCcEEEccCCCCccc-----CCchh---hhhhhheEccCcccccc------
Confidence            366788998887422      222 1223799999999876522     11111   26899999999865531      


Q ss_pred             HhhCCCCCeEeccC
Q 023841          136 SSTCPELKVFSIYW  149 (276)
Q Consensus       136 ~~~~~~L~~L~L~~  149 (276)
                        -.++|+.|++..
T Consensus       110 --LP~sLe~L~L~~  121 (426)
T PRK15386        110 --LPESVRSLEIKG  121 (426)
T ss_pred             --cccccceEEeCC
Confidence              134688888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=89.91  E-value=0.73  Score=36.67  Aligned_cols=38  Identities=3%  Similarity=0.037  Sum_probs=18.0

Q ss_pred             cCCCccceecccccCCCCCccee-EEEeeccCCCCceeeee
Q 023841          227 HGIRFFQAVQINSSNGGDHLAFA-YIIETNTYKHGKEKHII  266 (276)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~  266 (276)
                      .+|+.|+.+.+-.+++.+.-.+. +.+  ...|+|+.|+.+
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl--~klp~l~~LDF~  148 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVL--YKLPSLRTLDFQ  148 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEE--EecCcceEeehh
Confidence            44555555555444443332222 233  456666666544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=87.50  E-value=0.73  Score=44.49  Aligned_cols=22  Identities=0%  Similarity=-0.210  Sum_probs=11.8

Q ss_pred             cCCCccEEecCCCCCCCHHHHHH
Q 023841          190 NYQELESLNLTRYVNMILLGLFY  212 (276)
Q Consensus       190 ~~~~L~~L~l~~c~~it~~~l~~  212 (276)
                      .++++..|++.+. .++...+..
T Consensus       413 ~~~~l~~L~L~~N-pls~~tl~~  434 (754)
T PRK15370        413 EGPQPTRIIVEYN-PFSERTIQN  434 (754)
T ss_pred             cCCCccEEEeeCC-CccHHHHHH
Confidence            3455666666664 455444443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=86.37  E-value=0.31  Score=41.54  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             HHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEec
Q 023841           24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (276)
Q Consensus        24 ~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l   64 (276)
                      |+...||+||+..++..|..||+.|.+ +..++.+|+.+-.
T Consensus        85 hi~e~ilsyld~~sLc~celv~k~W~r-~l~dg~~WKkLie  124 (499)
T KOG0281|consen   85 HIAENILSYLDALSLCACELVCKEWKR-VLSDGMLWKKLIE  124 (499)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHH-HhccchHHHHHHH
Confidence            577889999999999999999999776 5666777776543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=84.81  E-value=0.58  Score=21.15  Aligned_cols=10  Identities=30%  Similarity=0.581  Sum_probs=4.7

Q ss_pred             CccEEecCCC
Q 023841          193 ELESLNLTRY  202 (276)
Q Consensus       193 ~L~~L~l~~c  202 (276)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            4555555554

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.04  E-value=2.6  Score=37.32  Aligned_cols=28  Identities=14%  Similarity=0.127  Sum_probs=16.1

Q ss_pred             HHHhccCHHHHHHHhcCCCCccEEecCCcc
Q 023841           39 ISLLLVSPWLHRTLVSYPSLWLVIDLREMN   68 (276)
Q Consensus        39 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~   68 (276)
                      ..+..|=.+.|.+...  .....++|+...
T Consensus       372 ~qlt~VPdEVfea~~~--~~Vt~VnfskNq  399 (565)
T KOG0472|consen  372 KQLTLVPDEVFEAAKS--EIVTSVNFSKNQ  399 (565)
T ss_pred             cccccCCHHHHHHhhh--cceEEEecccch
Confidence            4666677777764332  245566777643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=81.36  E-value=0.65  Score=41.55  Aligned_cols=79  Identities=28%  Similarity=0.340  Sum_probs=40.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~  191 (276)
                      +++|+.|++++ +.|++  +..+.. ++.|+.|+++++. +++ .++.    .+++|+.++++++ .+++-.-.. ...+
T Consensus       117 ~~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~N~-i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~-~~~~  185 (414)
T KOG0531|consen  117 LVNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSGNL-ISDISGLE----SLKSLKLLDLSYN-RIVDIENDE-LSEL  185 (414)
T ss_pred             hhcchheeccc-ccccc--ccchhh-ccchhhheeccCc-chhccCCc----cchhhhcccCCcc-hhhhhhhhh-hhhc
Confidence            36777777777 45554  222222 4447777777652 222 1111    2566777777765 333222101 2345


Q ss_pred             CCccEEecCCC
Q 023841          192 QELESLNLTRY  202 (276)
Q Consensus       192 ~~L~~L~l~~c  202 (276)
                      ..++.+.+.+.
T Consensus       186 ~~l~~l~l~~n  196 (414)
T KOG0531|consen  186 ISLEELDLGGN  196 (414)
T ss_pred             cchHHHhccCC
Confidence            66777776664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-19
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 49/218 (22%), Positives = 80/218 (36%), Gaps = 44/218 (20%)

Query: 25  VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALS----- 79
           ++ I S  L   +++ +  V    +R L S  SLW  +DL   N   +     LS     
Sbjct: 17  LLGIFS-CLCLPELLKVSGVCKRWYR-LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIA 74

Query: 80  --------------IPRYRHVREINLEFAQDIEDRHLELLKTKC---------------- 109
                               V+ ++L  +  IE   L  + ++C                
Sbjct: 75  FRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDP 133

Query: 110 ----LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV-KN 164
               L    +L  LNL+GC   S+  ++ + S+C  L   ++ W    T+  +Q  V   
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193

Query: 165 CKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTR 201
            + I  LNLSG  KNL    L  +      L  L+L+ 
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 85.3 bits (211), Expect = 2e-19
 Identities = 29/162 (17%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 48  LHRTLVSYPSLWLVID----LREMNNAGNRL--VAALSIPRYRHVREINLEFAQDIEDRH 101
           L  +++   +L  ++     L+ ++  G RL      ++ +  ++  +NL       +  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 102 LELLKTKCLGSLQDLESLNLNGCQKISDKGIE-IISSTCPELKVFSIY-WNVRVTDIGIQ 159
           L+ L + C      L+ LNL+ C   ++K ++  ++     +   ++  +   +    + 
Sbjct: 160 LQTLLSSC----SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
            LV+ C +++ L+LS    L +   Q        L+ L+L+R
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 80  IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139
           + R  ++  ++L  +  +++        +    L  L+ L+L+ C  I  + +  +    
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCF-----QEFFQLNYLQHLSLSRCYDIIPETLLELGE-I 271

Query: 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL 184
           P LK   ++    V D  +Q L +   H + +N S    +   ++
Sbjct: 272 PTLKTLQVFGI--VPDGTLQLLKEALPH-LQINCSHFTTIARPTI 313

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 82.6 bits (204), Expect = 5e-18
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 25  VIRIMSTRL-SQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRY 83
           +  + S  +   +D  S+ LV    +         W    +   N         +   R+
Sbjct: 14  LEHVFS-FIQLDKDRNSVSLVCKSWYEI-----ERWCRRKVFIGNCYAVSPATVIR--RF 65

Query: 84  RHVREINLEFAQDIEDRHLELLK---------TKCLGSLQDLESLNLNGCQKISDKGIEI 134
             VR + L+      D +L                  S   LE + L     ++D  +E+
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLEL 124

Query: 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADNYQ 192
           I+ +    KV  +      +  G+  +   C+++ +L+L      ++    L    D Y 
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 193 ELESLNLTRYVNMI-LLGLFYIWSNNILLMS 222
            L SLN++   + +    L  + +    L S
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKS 215

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 6e-14
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 97  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 156
             D     +   C    +DL  L+L+G   ++DK  E I +   ++++ S+ +    +D+
Sbjct: 419 PLDIGFGAIVEHC----KDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAF-AGDSDL 471

Query: 157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL 199
           G+ H++  C  +  L +  C    DK+L   A   + + SL +
Sbjct: 472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 43  LVSPWLHRTLVSYPSLWLVIDLREM--NNAGNRLVAALSIPRYRHVREINLEFAQDIEDR 100
            V PW+     SY  L   I L+ M   +    L+A      +++ + + L   +     
Sbjct: 92  YVYPWIEAMSSSYTWL-EEIRLKRMVVTDDCLELIAK----SFKNFKVLVLSSCEGFSTD 146

Query: 101 HLELLKTKCLGSLQDLESLNLNGCQ--KISDKGIEIISSTCPELKVFSIYW-NVRVTDIG 157
            L  +   C    ++L+ L+L       +S   +     T   L   +I      V+   
Sbjct: 147 GLAAIAATC----RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202

Query: 158 IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF 211
           ++ LV  C ++  L L+    L    L  +     +LE L    Y   +   ++
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVY 254

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 16/147 (10%)

Query: 62  IDLREMNNAGNRLVAALSIPRYRHVREI-NLEFAQDIEDRHLELLKTKCLGSLQDLESLN 120
           +            V +         +E+  L    D    +L  + + C      L +LN
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR----LTTLN 295

Query: 121 LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 180
           L+    +    +  +   CP+L+   +   +   D G++ L   CK + +L +   +  +
Sbjct: 296 LSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFV 352

Query: 181 --------DKSLQLIADNYQELESLNL 199
                   ++ L  ++    +LES+  
Sbjct: 353 MEPNVALTEQGLVSVSMGCPKLESVLY 379

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
            L    +A    + A+       +  +NL +A       ++LL          L+ L + 
Sbjct: 269 CLSGFWDAVPAYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLC-----QCPKLQRLWV- 321

Query: 123 GCQKISDKGIEIISSTCPELKV--------FSIYWNVRVTDIGIQHLVKNCKHIIDLNLS 174
               I D G+E+++STC +L+         F +  NV +T+ G+  +   C  +  + L 
Sbjct: 322 -LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LY 379

Query: 175 GCKNLLDKSLQLIADNYQELESLNL 199
            C+ + + +L  IA N   +    L
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRL 404

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             + E+            +    +  L   ++L  L+  G        +  + S C  L 
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLT 292

Query: 144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203
             ++ +   V    +  L+  C  +  L +     + D  L+++A   ++L  L +    
Sbjct: 293 TLNLSY-ATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 204 NMILLGLFYI 213
             ++     +
Sbjct: 350 PFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 9e-11
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 16/159 (10%)

Query: 50  RTLVSYPSLWLVIDLRE--MNNAGNRLVAALSIPRYRHVREINLE-FAQDIEDRHLELLK 106
             + +       +DLRE  +++     ++      Y  +  +N+   A ++    LE L 
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFSALERLV 207

Query: 107 TKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD----IGIQHLV 162
           T+C     +L+SL LN    +  + +  +    P+L+                 G+   +
Sbjct: 208 TRC----PNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
             CK +    LSG  + +   L  +      L +LNL+ 
Sbjct: 262 SGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 23/182 (12%), Positives = 53/182 (29%), Gaps = 21/182 (11%)

Query: 29  MSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVRE 88
           +   +    +  L      L    V     +++     +   G   V+           E
Sbjct: 321 VLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-----MGCPKLE 375

Query: 89  INLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ---------KISDKGIEIISSTC 139
             L F + + +  L  +         ++    L   +         +  D G   I   C
Sbjct: 376 SVLYFCRQMTNAALITIARNR----PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL 199
            +L+  S+   +  TD   +++    K +  L+++      D  +  +      L  L +
Sbjct: 432 KDLRRLSLSGLL--TDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEI 488

Query: 200 TR 201
             
Sbjct: 489 RD 490

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 97  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 156
           + D+  E + T      + +E L++      SD G+  + S C  L+   I       D 
Sbjct: 443 LTDKVFEYIGTYA----KKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC-PFGDK 496

Query: 157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
            +       + +  L +S C ++   + +L+     +L 
Sbjct: 497 ALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLN 534

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)

Query: 77  ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN-GCQKISDKGIEII 135
              +      R + L+  + I D  L+      L   + L           ++D G+  I
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
               P ++   +   V  +D G+    + C ++  L + GC    ++++         L 
Sbjct: 459 GQYSPNVRWMLL-GYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLR 516

Query: 196 SLNL 199
            L +
Sbjct: 517 YLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 76.5 bits (188), Expect = 5e-16
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 24/189 (12%)

Query: 25  VIRIMSTRL-SQRDIISLLLVS-PWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPR 82
           + ++M+  +   +D  S  LV   W      +   + +                 L   R
Sbjct: 21  IEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTM-------ALCYTATPDRL-SRR 71

Query: 83  YRHVREINLEFAQDIEDRHLELLK---------TKCLGSLQDLESLNLNGCQKISDKGIE 133
           + ++R + L+        +L             T+   +L+ L+S++      +SD  ++
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLD 130

Query: 134 IIS-STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADN 190
            ++ +   +L+   +      T  G+  +V +C+ I  L +          K L  +A +
Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190

Query: 191 YQELESLNL 199
              LE LN 
Sbjct: 191 NTSLEVLNF 199

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 73.1 bits (179), Expect = 9e-15
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 81  PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 140
           P    +R+++L +A    + H  L++        +LE L       I D+G+E+++  C 
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQ-----KCPNLEVLETRNV--IGDRGLEVLAQYCK 342

Query: 141 ELKVFSIYW----------NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190
           +LK   I               V+  G+  L + C+ +  + +    ++ ++SL+ I   
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTY 401

Query: 191 YQELESLNL 199
            + L    L
Sbjct: 402 LKNLCDFRL 410

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 8e-14
 Identities = 25/184 (13%), Positives = 67/184 (36%), Gaps = 10/184 (5%)

Query: 43  LVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHL 102
            V+PW+     +   L   +  R M    +  +  L+  R   +  + L+         L
Sbjct: 99  YVTPWVTEISNNLRQL-KSVHFRRMIV-SDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 103 ELLKTKCLGSLQDLESLNLNGCQKI--SDKGIEIISSTCPELKVFSIYWN--VRVTDIGI 158
             + T C    + +++L +          K +  ++     L+V + Y     +++   +
Sbjct: 157 LSIVTHC----RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218
           + + +NC+ ++ + +   + L        A N +E    +L   + M    +  ++   +
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 219 LLMS 222
             + 
Sbjct: 273 CRLG 276

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 97  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 156
           + D  L  +         ++  + L      SD+G+   S  CP L+   +      ++ 
Sbjct: 450 LTDLGLSYIGQYS----PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC-CFSER 503

Query: 157 GIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTR 201
            I   V     +  L + G + ++  + L  +A  Y  +E +   R
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 9e-12
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 22/183 (12%)

Query: 46  PWLHRTLVSYPSL-WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR---- 100
            WLH       SL  L   + E      + +  ++    R +  + +   + +E      
Sbjct: 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFK 240

Query: 101 ---HLELLKTKCLG----------SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSI 147
              +LE      L           +L     L   G   +    + I+     +++   +
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 148 YWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 207
            + +  T+     L++ C ++  L       + D+ L+++A   ++L+ L + R  +   
Sbjct: 301 LYALLETEDHCT-LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 208 LGL 210
           +  
Sbjct: 358 MED 360

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 23/127 (18%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 155
           + + + L  L      SL+ L +  +    KIS K +E I+  C  L    +     +  
Sbjct: 178 EKDGKWLHELAQHNT-SLEVL-NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235

Query: 156 IGIQHLVKNCKHI---------------------IDLNLSGCKNLLDKSLQLIADNYQEL 194
           +G      N +                         L   G   +    + ++     ++
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295

Query: 195 ESLNLTR 201
             L+L  
Sbjct: 296 RKLDLLY 302

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIY-WNVRVTDIGIQHLVKNCKHI 168
                +L+ L + GC   S++ I    +  P L+   +  +   +T   +  + +   +I
Sbjct: 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542

Query: 169 IDLNLSGCKNLLDKSLQLIADNYQEL 194
             +       +  +      ++   +
Sbjct: 543 ELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 110 LGSLQDLESLNLNGCQ-KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI 168
           +  L  L  L + G +  ++ + +  ++     +++        V   G    +++  HI
Sbjct: 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

Query: 169 I 169
           +
Sbjct: 569 L 569

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 64.1 bits (156), Expect = 8e-13
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVR 152
           D  D  +  +    +  LQ +E + L  C  I D  +E +S        +    I     
Sbjct: 67  DATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126

Query: 153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA 188
           VTD GI  L  + +++  L LS    + +K   + A
Sbjct: 127 VTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 150 NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMI 206
           +  +  IG  H ++  +++  + L  C  + D  L+ ++   +  + +  + +    N+ 
Sbjct: 70  DSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128

Query: 207 LLGLFYI 213
             G+  +
Sbjct: 129 DKGIIAL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 50/243 (20%)

Query: 3   MEEEKVKAAEEEETW-SKETVPKVIRIMST-RLSQRDIISLLLVS------PWLH---RT 51
           M +  +   E +    SK+ V   +R+  T    Q +++   +         +L    +T
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 52  LVSYPSL--WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC 109
               PS+   + I+ R+     N++ A  ++ R +   ++                  + 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----------------RQA 143

Query: 110 LGSLQDLESLNLNG---CQKISDKGIEIISSTCPELKV-----FSIYW----NVRVTDIG 157
           L  L+  +++ ++G     K       +    C   KV     F I+W    N    +  
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 158 IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESL-NLTRYVNMILLGLFYIWSN 216
           ++ L K   + ID N +   +        I     EL  L     Y N  LL L  + + 
Sbjct: 199 LEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNA 256

Query: 217 NIL 219
              
Sbjct: 257 KAW 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 7e-08
 Identities = 46/314 (14%), Positives = 93/314 (29%), Gaps = 76/314 (24%)

Query: 17  WSKETVP------KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYP------------SL 58
            + +         K++  ++TR   + +   L  +   H +L  +               
Sbjct: 254 QNAKAWNAFNLSCKIL--LTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 59  WLVI---DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE-DRHLELLKTKCLGSLQ 114
           +L     DL       N    ++ I           +  + +  D+   ++++    SL 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIES----SLN 364

Query: 115 DLESLNLNGCQK---ISDKGIEIISSTCPELKVFSIYWN---VRVTDIGIQHLV------ 162
            LE            +      I     P   + S+ W         + +  L       
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHI-----PT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 163 KNCK------HIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRYVNMILLGLFY--- 212
           K  K        I L L   K   + +L + I D+Y   ++ +    +   L   FY   
Sbjct: 419 KQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 213 ----IWSNNILLMSEF--IYHGIRFFQAVQINSSNGGDHLAFAYIIET----NTYKHGKE 262
                   +   M+ F  ++   RF +  +I         A   I+ T      YK    
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHD-STAWNASGSILNTLQQLKFYK---- 531

Query: 263 KHIIETIKTGQQLL 276
            +I +     ++L+
Sbjct: 532 PYICDNDPKYERLV 545

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 18/152 (11%)

Query: 61  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 120
            +D++      +   A L +P  +  + + L+    + +   + + +  L     L  LN
Sbjct: 7   SLDIQC-EELSDARWAEL-LPLLQQCQVVRLDDCG-LTEARCKDI-SSALRVNPALAELN 62

Query: 121 LNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNL 173
           L   + + D G+  +     +   +++  S+     +T  G   L   ++    + +L+L
Sbjct: 63  LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 174 SGCKNLLDKSLQLIADNYQE----LESLNLTR 201
           S    L D  LQL+ +   +    LE L L  
Sbjct: 121 SDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEY 151

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---V 162
           L +L  L+ L+L+    + D G++++          L+   + +   ++    + L   +
Sbjct: 109 LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVL 166

Query: 163 KNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNL 199
           +      +L +S   ++ +  ++++      +  +LE+L L
Sbjct: 167 RAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKL 206

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIID 170
            D++SL++   + +SD     +     + +V  +     +T+   + +    +    + +
Sbjct: 3   LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 60

Query: 171 LNLSGCKNLLDKSLQLIAD----NYQELESLNL 199
           LNL     L D  +  +         +++ L+L
Sbjct: 61  LNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSL 92

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 77  ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136
              +     +RE+ L   + + D  +  L    L     L +L +  C  I+ KG   + 
Sbjct: 220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC 277

Query: 137 S---TCPELKVFSIYWNVRVTDIGIQHLV----KNCKHIIDLNLSGCKNLLDKSLQLIAD 189
                   LK  S+  N  + D G + L     +    +  L +  C +         + 
Sbjct: 278 RVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSS 335

Query: 190 ---NYQELESLNL 199
                + L  L +
Sbjct: 336 VLAQNRFLLELQI 348

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 116 LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVKNCKH----I 168
           LE+L L  C  ++      +     +   L+  ++  N ++ D+G+  L     H    +
Sbjct: 201 LEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRL 258

Query: 169 IDLNLSGCKNLLDKSLQLIAD---NYQELESLNL 199
             L +  C  +  K    +       + L+ L+L
Sbjct: 259 RTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL 291

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 28/114 (24%)

Query: 108 KCLGSLQDLESLNLNGCQKISDKGIEIISS------------TCPELKVFSIYWNVRVTD 155
             L     LE L L+    +  +    I+               P L+      N R+ +
Sbjct: 116 DFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLEN 173

Query: 156 IGIQHL---VKNCKHIIDLNLS-------GCKNLLDKSLQLIADNYQELESLNL 199
             ++      ++ + +  + +        G ++LL + L       QEL+ L+L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA----YCQELKVLDL 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 87  REINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII-----SSTCPE 141
             ++       E ++           L  L  LNL G + ++     ++     S     
Sbjct: 50  ELLDH-LFFHYEFQNQRFS----AEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHA- 102

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESL 197
           L   ++    ++   G++ L+        L L    +L  ++ + + D    +  ++ +L
Sbjct: 103 LDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTL 160

Query: 198 NL 199
            L
Sbjct: 161 RL 162

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 116 LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNV--RVTDIGIQHL---VKNCKH 167
           + SLNL     +    +E +     +   L+   + +++   ++    + L     N + 
Sbjct: 227 VVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 168 IIDLNLSGCKNLLDKSLQLIADNYQE----LESLNL 199
           II ++ +G + +       I++  +E     +  +L
Sbjct: 286 IILVDKNGKE-IHPSHSIPISNLIRELSGKADVPSL 320

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 74  LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133
           +    SIP    V  ++L     +       L      +   + SLNL+G   +  K  +
Sbjct: 14  VEEFTSIPH--GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSD 69

Query: 134 IIS----STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQ 185
            +     +    +   ++  N  ++      LVK        I  L+L    +   KS  
Sbjct: 70  ELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS 127

Query: 186 LIAD----NYQELESLNL 199
                       + SLNL
Sbjct: 128 EFKQAFSNLPASITSLNL 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.97
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.61
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.55
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.4
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.4
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.33
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.2
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.2
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.09
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.01
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.92
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.19
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.98
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	96.82
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.31
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.73
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.44
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.03

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.94  E-value=4.8e-25  Score=189.29  Aligned_cols=242  Identities=18%  Similarity=0.248  Sum_probs=173.7

Q ss_pred             ccCCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHh--------------
Q 023841           13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL--------------   78 (276)
Q Consensus        13 ~~~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l--------------   78 (276)
                      .+..|++.| +|++.+||+||+..|+.+++.||++|+.. ..++..|+.++++....... .+..+              
T Consensus         5 ~~~~~~~LP-~eil~~If~~L~~~d~~~~~~vc~~W~~~-~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~   81 (336)
T 2ast_B            5 PGVSWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSF   81 (336)
T ss_dssp             --CCSSSSC-HHHHHHHHTTSCHHHHHHTTSSCHHHHHH-HTCSTTSSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCE
T ss_pred             ccCChhhCC-HHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hcCchhheeeccccccCCHH-HHHhhhhccceEEEcCCcc
Confidence            467898887 89999999999999999999999997764 55688999999987654321 11111              


Q ss_pred             ------ccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCC
Q 023841           79 ------SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR  152 (276)
Q Consensus        79 ------~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~  152 (276)
                            ....+++|++|++++| .+++.++..+...+    ++|++|++++| .+++.....++. +++|++|++++|..
T Consensus        82 l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~----~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~  154 (336)
T 2ast_B           82 MDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQC----SKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSG  154 (336)
T ss_dssp             ECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTB----CCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBS
T ss_pred             ccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhC----CCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCC
Confidence                  0134588999999985 57777677666655    89999999986 788877777766 88999999998878


Q ss_pred             cCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC-CccEEecCCCC-CCCHHHHHHHHhcCchh----------
Q 023841          153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYV-NMILLGLFYIWSNNILL----------  220 (276)
Q Consensus       153 l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~-~L~~L~l~~c~-~it~~~l~~l~~~~~~~----------  220 (276)
                      +++.++..+...+++|++|++++|..+++.++..+...+| +|++|++++|. .+++.++..+....+..          
T Consensus       155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            8888888877789999999999987888888777777788 99999999986 67877776654321110          


Q ss_pred             ---hHHHHHcCCCccceecccccC-CCCCcceeEEEeeccCCCCceeeeecc
Q 023841          221 ---MSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       221 ---l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                         .....+..++.|+.++++++. +.+. ++..+   ..+++|+.|++.+|
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l---~~~~~L~~L~l~~~  282 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLEL---GEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGG---GGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHH---hcCCCCCEEeccCc
Confidence               001123445666666665553 2222 22222   35677777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=8e-22  Score=181.42  Aligned_cols=183  Identities=21%  Similarity=0.296  Sum_probs=122.0

Q ss_pred             cCCCCCCCcHHHHHHHhcCCC-HhhhHHHhccCHHHHHHHh--------------------cCCCCccEEecCCccCcch
Q 023841           14 EETWSKETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLV--------------------SYPSLWLVIDLREMNNAGN   72 (276)
Q Consensus        14 ~~~~~~~~~p~il~~if~~L~-~~~l~~~~~v~~~~~~~~~--------------------~~~~~~~~l~l~~~~~~~~   72 (276)
                      ...|++.| +|++.+||+||+ .+|+.+++.||++|++...                    ...+.++.++++++....+
T Consensus         3 ~d~~~~LP-devL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            3 KRIALSFP-EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             -------C-HHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             ccchhhCC-HHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            35688877 799999999999 9999999999999886411                    1123345555554332211


Q ss_pred             -------------hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhC
Q 023841           73 -------------RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  139 (276)
Q Consensus        73 -------------~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  139 (276)
                                   ..+..+. ..+++|++|+++++ .+++..+..+...+    ++|++|++++|..+++.++..+...|
T Consensus        82 ~~l~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~-~~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~l~~~~~~~  155 (594)
T 2p1m_B           82 FNLVPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRM-VVTDDCLELIAKSF----KNFKVLVLSSCEGFSTDGLAAIAATC  155 (594)
T ss_dssp             GTCSCTTSCCBCHHHHHHHH-HHCTTCCEEEEESC-BCCHHHHHHHHHHC----TTCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred             cccccccccchhhHHHHHHH-HhCCCCCeEEeeCc-EEcHHHHHHHHHhC----CCCcEEeCCCcCCCCHHHHHHHHHhC
Confidence                         1122222 46778888888875 57777777777655    78888888887677777777777778


Q ss_pred             CCCCeEeccCCCCcCHHH---HHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCccEEecCCCCC
Q 023841          140 PELKVFSIYWNVRVTDIG---IQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVN  204 (276)
Q Consensus       140 ~~L~~L~L~~~~~l~~~~---l~~l~~~~~~L~~L~l~~c~-~ltd~~~~~l~~~~~~L~~L~l~~c~~  204 (276)
                      ++|++|++++|. +++.+   +..+...+++|++|++++|. .+++.++..+..++++|++|++++|..
T Consensus       156 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          156 RNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             TTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            888888887763 44333   33344466777777777764 577778877777788888888888743

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=2.8e-17  Score=140.77  Aligned_cols=195  Identities=19%  Similarity=0.226  Sum_probs=110.9

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.++++++... ...+.... ..+++|++|++++| .+++.....+..     +++|++|++++|..+++.++..+.
T Consensus        93 ~~L~~L~L~~~~l~-~~~~~~~~-~~~~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           93 FRVQHMDLSNSVIE-VSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             BCCCEEECTTCEEC-HHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCEEEccCCCcC-HHHHHHHH-hhCCCCCEEeCcCc-ccCHHHHHHHhc-----CCCCCEEECCCCCCCCHHHHHHHH
Confidence            45556666655422 22122222 45666666666664 455555555433     366666666665556666666655


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCC-CCcEEecCCCC-CCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHH
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIW  214 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-~L~~L~l~~c~-~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~  214 (276)
                      ..+++|++|++++|..+++.++..+...++ +|++|++++|. .+++.++..+...+++|++|++++|..+++.++..+.
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            566666666666665666666555555666 66666666664 4666666666556666666666666446655544443


Q ss_pred             hc----------CchhhHH---HHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841          215 SN----------NILLMSE---FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       215 ~~----------~~~~l~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                      ..          +. ....   ..+..+++|+.+++..+ +++. ++..+.  .   +|+.|++..
T Consensus       245 ~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~~-~~~~l~--~---~l~~L~l~~  302 (336)
T 2ast_B          245 QLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPDG-TLQLLK--E---ALPHLQINC  302 (336)
T ss_dssp             GCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCTT-CHHHHH--H---HSTTSEESC
T ss_pred             CCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCHH-HHHHHH--h---hCcceEEec
Confidence            21          11 0001   13456889999999877 5555 444333  2   344455543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=1.3e-17  Score=153.43  Aligned_cols=193  Identities=19%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccC----------CCCCcHHHHHHHHHHccCCCCCccEEecC
Q 023841           53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF----------AQDIEDRHLELLKTKCLGSLQDLESLNLN  122 (276)
Q Consensus        53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~----------~~~l~~~~~~~i~~~~~~~~~~L~~L~l~  122 (276)
                      ....+.++.+++..  ...+..+..+. ..+++|++|++++          |..+++.++..+...|    ++|++|+++
T Consensus       314 ~~~~~~L~~L~L~~--~~~~~~l~~~~-~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~L~~L~l~  386 (592)
T 3ogk_B          314 IQKCPNLEVLETRN--VIGDRGLEVLA-QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC----QELEYMAVY  386 (592)
T ss_dssp             HTTCTTCCEEEEEG--GGHHHHHHHHH-HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC----TTCSEEEEE
T ss_pred             HHhCcCCCEEeccC--ccCHHHHHHHH-HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC----ccCeEEEee
Confidence            34445555555551  12222333332 3455566666653          5555555555555544    556666653


Q ss_pred             CCCCCCHHHHHHHHhhCCCCCeEeccC---CCCcCH----HHHHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCc
Q 023841          123 GCQKISDKGIEIISSTCPELKVFSIYW---NVRVTD----IGIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQEL  194 (276)
Q Consensus       123 ~c~~l~~~~~~~l~~~~~~L~~L~L~~---~~~l~~----~~l~~l~~~~~~L~~L~l~~c~-~ltd~~~~~l~~~~~~L  194 (276)
                       |+.+++.++..++..|++|++|++++   |..+++    +++..+..+|++|++|++++|. .+++.++..+...+++|
T Consensus       387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence             34555555555555555666655542   334443    3455555555556666655543 25555555555555556


Q ss_pred             cEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          195 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       195 ~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +.|++++| .+++.++..            ...+|++|+.++++++.+++. ++..+.  ..+++|+.|++.+|.
T Consensus       466 ~~L~L~~n-~l~~~~~~~------------~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          466 RWMLLGYV-GESDEGLME------------FSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CEEEECSC-CSSHHHHHH------------HHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESCB
T ss_pred             eEeeccCC-CCCHHHHHH------------HHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCCc
Confidence            66666555 455555444            235567777777777765444 333333  467777777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=3e-17  Score=150.91  Aligned_cols=153  Identities=21%  Similarity=0.306  Sum_probs=81.8

Q ss_pred             CCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEecc-----CCCCcC----HHHHHHHHHhC
Q 023841           95 QDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIY-----WNVRVT----DIGIQHLVKNC  165 (276)
Q Consensus        95 ~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~-----~~~~l~----~~~l~~l~~~~  165 (276)
                      ..+++.++..+...|    ++|++|.+++ +.+++.++..++..|++|+.|+++     +|..++    +.++..+...|
T Consensus       357 ~~l~~~~l~~l~~~~----~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~  431 (594)
T 2p1m_B          357 VALTEQGLVSVSMGC----PKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC  431 (594)
T ss_dssp             SCCCHHHHHHHHHHC----TTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhc----hhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence            344444444444433    4444443322 344444444444444444444444     333444    44444444444


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      ++|+.|++++  .+++.++..+...+++|+.|++++| .+++.++..+            ..+|++|+.++++++.+++.
T Consensus       432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l------------~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV------------LSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHH------------HHHCTTCCEEEEESCSCCHH
T ss_pred             CCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHH------------HhcCCCcCEEECcCCCCcHH
Confidence            4444444433  4444444444444444555555444 3444444332            24588899999988888555


Q ss_pred             cceeEEEeeccCCCCceeeeeccee
Q 023841          246 LAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       246 ~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                       ++..+.  ..+++|+.|++.+|..
T Consensus       497 -~~~~~~--~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          497 -ALLANA--SKLETMRSLWMSSCSV  518 (594)
T ss_dssp             -HHHHTG--GGGGGSSEEEEESSCC
T ss_pred             -HHHHHH--HhCCCCCEEeeeCCCC
Confidence             554444  6789999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=5.3e-17  Score=149.26  Aligned_cols=194  Identities=15%  Similarity=0.216  Sum_probs=146.2

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC----------C
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG----------C  124 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~----------c  124 (276)
                      ..+.++.++++++. ..+..+..+. ..+++|++|++.  ..+++.++..+...|    ++|++|++++          |
T Consensus       291 ~~~~L~~L~Ls~~~-l~~~~~~~~~-~~~~~L~~L~L~--~~~~~~~l~~~~~~~----~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          291 FAAQIRKLDLLYAL-LETEDHCTLI-QKCPNLEVLETR--NVIGDRGLEVLAQYC----KQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             GGGGCCEEEETTCC-CCHHHHHHHH-TTCTTCCEEEEE--GGGHHHHHHHHHHHC----TTCCEEEEECCCCSSTTSSTT
T ss_pred             hcCCCcEEecCCCc-CCHHHHHHHH-HhCcCCCEEecc--CccCHHHHHHHHHhC----CCCCEEEeecCcccccccccc
Confidence            34467777777766 3333332322 577888888887  457777888777766    7888888884          7


Q ss_pred             CCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecC---CCCCCCH----HHHHHHHhcCCCccEE
Q 023841          125 QKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS---GCKNLLD----KSLQLIADNYQELESL  197 (276)
Q Consensus       125 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~---~c~~ltd----~~~~~l~~~~~~L~~L  197 (276)
                      +.+++.++..++..|++|++|+++ |..+++.++..++.++++|++|+++   .|..+++    .++..+...|++|++|
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence            788888888888888888888884 5688888888888778888888887   3556775    5777777788888888


Q ss_pred             ecCCCC-CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          198 NLTRYV-NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       198 ~l~~c~-~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ++++|. .+++.++..+.            ..+++|+.+++.++.+++. ++..+.  .+|++|+.|++++|. ++|
T Consensus       442 ~L~~~~~~l~~~~~~~~~------------~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~n~-l~~  502 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIG------------QYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRGCC-FSE  502 (592)
T ss_dssp             EEECCGGGCCHHHHHHHH------------HSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEESCC-CBH
T ss_pred             EEecCCCCccHHHHHHHH------------HhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccCCC-CcH
Confidence            887764 37777776643            4577899999999888776 555555  789999999999998 554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.68  E-value=3.1e-17  Score=126.36  Aligned_cols=95  Identities=13%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIADN  190 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~~l~~~  190 (276)
                      .+|++|++++| .+++.|+..+. .|++|++|+|++|..+||.++..++.   .+++|++|++++|..|||.|+..+. +
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~  137 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H  137 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred             ceEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence            45777777776 47777777664 57777777777777777777777764   2456777777777777777777776 3


Q ss_pred             CCCccEEecCCCCCCCHHHHH
Q 023841          191 YQELESLNLTRYVNMILLGLF  211 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~~~l~  211 (276)
                      |++|++|++++|+.+||.++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~  158 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKI  158 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHH
T ss_pred             CCCCCEEECCCCCCCCchHHH
Confidence            777777777777777776643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.64  E-value=1.4e-16  Score=122.68  Aligned_cols=106  Identities=24%  Similarity=0.253  Sum_probs=94.2

Q ss_pred             CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCCeEeccCCCCcCHHHHH
Q 023841           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQ  159 (276)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~l~  159 (276)
                      ..+|++|++++|. ++|.++..+. .    +++|++|++++|..++|.++..++..   |++|++|+|++|..+||.++.
T Consensus        60 ~~~L~~LDLs~~~-Itd~GL~~L~-~----~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           60 KYKIQAIDATDSC-IMSIGFDHME-G----LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCEEEEEEESCC-CCGGGGGGGT-T----CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CceEeEEeCcCCC-ccHHHHHHhc-C----CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            3479999999985 9999999884 3    59999999999999999999999973   789999999999999999999


Q ss_pred             HHHHhCCCCcEEecCCCCCCCHHH--HHHHHhcCCCcc
Q 023841          160 HLVKNCKHIIDLNLSGCKNLLDKS--LQLIADNYQELE  195 (276)
Q Consensus       160 ~l~~~~~~L~~L~l~~c~~ltd~~--~~~l~~~~~~L~  195 (276)
                      .++ .|++|++|++++|..+||.+  ...+...+|+++
T Consensus       134 ~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          134 ALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             HGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             HHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            997 69999999999999999877  455666788876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.57  E-value=2.4e-14  Score=124.94  Aligned_cols=203  Identities=11%  Similarity=0.070  Sum_probs=114.2

Q ss_pred             CCCCccEEecCCccCcchh--hHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCC---------CCccEEecCC
Q 023841           55 YPSLWLVIDLREMNNAGNR--LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL---------QDLESLNLNG  123 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~--~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~---------~~L~~L~l~~  123 (276)
                      ..+.++.++++++......  .+.. .+..+++|++|++++| .+++.+...+...+. .+         ++|++|++++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNN-GLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSS-CCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCC-CCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCC
Confidence            3455666666655433211  1111 1245666666666663 455555444444220 11         5677777776


Q ss_pred             CCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHHHHHHHH----hCCCCcEEecCCCCCCCHHHHHHHH---hcCCC
Q 023841          124 CQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQE  193 (276)
Q Consensus       124 c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~l~~c~~ltd~~~~~l~---~~~~~  193 (276)
                      | .+++.++..++   ..+++|++|++++| .+++.++..++.    .+++|+.|++++| .+++.+...+.   ..+++
T Consensus       169 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          169 N-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             S-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTT
T ss_pred             C-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCC
Confidence            3 56655555332   25667777777766 566666554443    5667777777765 56665554443   34667


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEee--ccCCCCceeeeecceec
Q 023841          194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETIKT  271 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~l~~~~~~~~  271 (276)
                      |++|++++| .+++.+...+..       .+....++.|+.++++++.+++. ++..+...  ..+|+|+.|++.++.-.
T Consensus       246 L~~L~L~~n-~i~~~~~~~l~~-------~l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          246 LRELGLNDC-LLSARGAAAVVD-------AFSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CCEEECTTC-CCCHHHHHHHHH-------HHHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCEEECCCC-CCchhhHHHHHH-------HHhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            777777776 566666555431       11113378888888888887663 22222211  34788999988887644


Q ss_pred             c
Q 023841          272 G  272 (276)
Q Consensus       272 ~  272 (276)
                      +
T Consensus       317 ~  317 (386)
T 2ca6_A          317 E  317 (386)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=126.19  Aligned_cols=178  Identities=15%  Similarity=0.117  Sum_probs=140.1

Q ss_pred             CCCccEEecCCccCcch--hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           56 PSLWLVIDLREMNNAGN--RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~--~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      .+.++.++++++.....  ..+.......+++|++|++++| .+++.++..+...+    ++|++|++++| .+++.++.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L----~~L~~L~Ls~n-~l~~~~~~  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVF----LRARKLGLQLN-SLGPEACK  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHH----HTEEEEECCSS-CCCHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHH----HhccHhhcCCC-CCCHHHHH
Confidence            45688999998875532  2222322234579999999995 79999999998877    78999999995 89999888


Q ss_pred             HHHh----hCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCC
Q 023841          134 IISS----TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV  203 (276)
Q Consensus       134 ~l~~----~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~  203 (276)
                      .++.    .+++|++|+|++| .+++.++..++   ..+++|++|++++| .+++.++..+..   .+++|+.|++++| 
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-  221 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-  221 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-
T ss_pred             HHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-
Confidence            8765    3678999999998 79988877765   46789999999997 799998877764   5779999999998 


Q ss_pred             CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE
Q 023841          204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII  252 (276)
Q Consensus       204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  252 (276)
                      .+++.+...++.         .+..++.|+.++++++.+++. +...+.
T Consensus       222 ~i~~~g~~~l~~---------~L~~~~~L~~L~Ls~N~i~~~-g~~~L~  260 (372)
T 3un9_A          222 GAGDTAALALAR---------AAREHPSLELLHLYFNELSSE-GRQVLR  260 (372)
T ss_dssp             CCCHHHHHHHHH---------HHHHCSSCCEEECTTSSCCHH-HHHHHH
T ss_pred             CCCHHHHHHHHH---------HHHhCCCCCEEeccCCCCCHH-HHHHHH
Confidence            899998887642         345677899999999998877 655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=8e-14  Score=124.19  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=99.5

Q ss_pred             CccEEecCCccCcchh--hHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           58 LWLVIDLREMNNAGNR--LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~--~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .++.++++++......  .+.. .+..+++|++|+++++ .+++.+...+...+....++|++|++++| .+++.+...+
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH
Confidence            5777777776544321  1111 2357788888888874 58888888777766555567888888885 6776654433


Q ss_pred             ---HhhCCCCCeEeccCCCCcCHHHHHHHHHh----CCCCcEEecCCCCCCCHHHHHHHH---hcCCCccEEecCCCCCC
Q 023841          136 ---SSTCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNM  205 (276)
Q Consensus       136 ---~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~ltd~~~~~l~---~~~~~L~~L~l~~c~~i  205 (276)
                         ...+++|++|+++++ .+++.++..++..    .++|++|++++| .+++.++..+.   ..+++|++|++++| .+
T Consensus       163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l  239 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KL  239 (461)
T ss_dssp             HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BC
T ss_pred             HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cC
Confidence               334788888888876 5777776666543    447888888876 66665543333   35777888888776 67


Q ss_pred             CHHHHHHHH
Q 023841          206 ILLGLFYIW  214 (276)
Q Consensus       206 t~~~l~~l~  214 (276)
                      ++.++..+.
T Consensus       240 ~~~~~~~l~  248 (461)
T 1z7x_W          240 GDVGMAELC  248 (461)
T ss_dssp             HHHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            777766554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=1.6e-13  Score=122.32  Aligned_cols=182  Identities=15%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIG  157 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~  157 (276)
                      ..+++|++|+++++ .+++.+...+...+....++|++|++++| .+++.++..+.   ..+++|++|+++++ .+++.+
T Consensus       167 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~  243 (461)
T 1z7x_W          167 RAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVG  243 (461)
T ss_dssp             HHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHH
T ss_pred             hhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHH
Confidence            35677777877774 57777777776655434467888888885 67766544333   35788888888876 677777


Q ss_pred             HHHHHH----hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCCHHHHHHHHhcCc---hhh------
Q 023841          158 IQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNI---LLM------  221 (276)
Q Consensus       158 l~~l~~----~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~~~l~~l~~~~~---~~l------  221 (276)
                      +..++.    .+++|++|++++| .+++.++..+..   .+++|++|+++++ .+++.+...+.....   ..+      
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcC
Confidence            666654    4678888888886 777777554443   4788888888886 677777666654200   000      


Q ss_pred             -----------HHHHHcCCCccceecccccCCCCCcceeEEEee--ccCCCCceeeeecc
Q 023841          222 -----------SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIET  268 (276)
Q Consensus       222 -----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~l~~~~~  268 (276)
                                 -...+..++.|+.++++++.+++. +...+...  ...++|++|++.+|
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-GVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccc-cHHHHHHHHcCCCCceEEEECCCC
Confidence                       011234556677777766665554 32222210  12567777777776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=1.6e-13  Score=119.72  Aligned_cols=222  Identities=11%  Similarity=0.084  Sum_probs=146.9

Q ss_pred             cCCCHhhhHHHhccCHHHHHHH---hcCCCCccEEecCCccCc--ch---hhHHHh--ccccCCCccEEeccCCCCCcHH
Q 023841           31 TRLSQRDIISLLLVSPWLHRTL---VSYPSLWLVIDLREMNNA--GN---RLVAAL--SIPRYRHVREINLEFAQDIEDR  100 (276)
Q Consensus        31 ~~L~~~~l~~~~~v~~~~~~~~---~~~~~~~~~l~l~~~~~~--~~---~~l~~l--~~~~~~~L~~L~l~~~~~l~~~  100 (276)
                      +.|...++..+ .+.......+   ....+.++.++++.+...  ..   ..+..+  .+..+++|++|+++++ .+++.
T Consensus        32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT  109 (386)
T ss_dssp             SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred             CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence            44454444443 3333323222   345677888988876322  11   122111  1257889999999984 67775


Q ss_pred             HHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhC------------CCCCeEeccCCCCcCHHHHHHHH---HhC
Q 023841          101 HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC------------PELKVFSIYWNVRVTDIGIQHLV---KNC  165 (276)
Q Consensus       101 ~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~------------~~L~~L~L~~~~~l~~~~l~~l~---~~~  165 (276)
                      +...+.... ..+++|++|++++| .+++.+...++..+            ++|++|++++| .+++.++..++   ..+
T Consensus       110 ~~~~l~~~l-~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          110 AQEPLIDFL-SKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             THHHHHHHH-HHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHH-HhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhC
Confidence            555444332 22488999999995 77776665555432            89999999987 67766666443   378


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHh----cCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l~~----~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      ++|++|++++| .+++.++..+..    .+++|+.|++++| .+++.+...+..         .+..++.|+.++++++.
T Consensus       187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~---------~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAI---------ALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHH---------HGGGCTTCCEEECTTCC
T ss_pred             CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHH---------HHccCCCcCEEECCCCC
Confidence            89999999997 788888766554    6889999999997 688887766532         45677889999998888


Q ss_pred             CCCCcceeEEEee---ccCCCCceeeeecce
Q 023841          242 GGDHLAFAYIIET---NTYKHGKEKHIIETI  269 (276)
Q Consensus       242 ~~~~~~~~~~~~~---~~~~~L~~l~~~~~~  269 (276)
                      +++. +...+...   ..+++|+.|++.+|.
T Consensus       256 i~~~-~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          256 LSAR-GAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             CCHH-HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             Cchh-hHHHHHHHHhhccCCCeEEEECcCCc
Confidence            7765 33222211   338899999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.53  E-value=2.8e-13  Score=117.73  Aligned_cols=153  Identities=15%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +..++.++++++... +..+..+. ..+++|++|++++| .+++.+...++.......++|++|++++| .+++.++..+
T Consensus       100 ~~~L~~L~Ls~n~l~-~~~~~~l~-~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l  175 (372)
T 3un9_A          100 RHALDEVNLASCQLD-PAGLRTLL-PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL  175 (372)
T ss_dssp             SSCEEEEECTTCCCC-HHHHHHTH-HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred             CCCceEEEecCCCCC-HHHHHHHH-HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence            356777777766543 22223332 33456777777774 67777777776655444567777777774 6777666555


Q ss_pred             H---hhCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCC
Q 023841          136 S---STCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMI  206 (276)
Q Consensus       136 ~---~~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it  206 (276)
                      +   ..+++|++|+|++| .+++.++..++   ..+++|++|++++| .+++.+...++.   .+++|++|++++| .++
T Consensus       176 ~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~  252 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELS  252 (372)
T ss_dssp             HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred             HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence            4   34667777777766 57776665554   24457777777775 677766665544   3567777777776 577


Q ss_pred             HHHHHHHHh
Q 023841          207 LLGLFYIWS  215 (276)
Q Consensus       207 ~~~l~~l~~  215 (276)
                      +.+...+..
T Consensus       253 ~~g~~~L~~  261 (372)
T 3un9_A          253 SEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=6.3e-13  Score=115.04  Aligned_cols=198  Identities=14%  Similarity=0.064  Sum_probs=114.6

Q ss_pred             CCCccEEecCCccCcch--hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           56 PSLWLVIDLREMNNAGN--RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~--~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      +..++.++++++.....  ..+.......+++|++|+++++ .+++.....+...+....++|++|++++| .+++.+..
T Consensus        50 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~  127 (362)
T 3goz_A           50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS  127 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred             CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHH
Confidence            33677777777654331  2222221122377888888774 56655555555543222267788888774 66666655


Q ss_pred             HHHhh----CCCCCeEeccCCCCcCHHHHHHHH---HhCC-CCcEEecCCCCCCCHHHHHHHH---hcC-CCccEEecCC
Q 023841          134 IISST----CPELKVFSIYWNVRVTDIGIQHLV---KNCK-HIIDLNLSGCKNLLDKSLQLIA---DNY-QELESLNLTR  201 (276)
Q Consensus       134 ~l~~~----~~~L~~L~L~~~~~l~~~~l~~l~---~~~~-~L~~L~l~~c~~ltd~~~~~l~---~~~-~~L~~L~l~~  201 (276)
                      .++..    +++|++|++++| .+++.+...++   ...+ +|++|++++| .+++.+...+.   ..+ ++|++|++++
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            55443    457788888776 56654444443   2343 7888888776 55544433332   234 4788888887


Q ss_pred             CCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcce---eEEEeeccCCCCceeeeecce
Q 023841          202 YVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAF---AYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       202 c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      | .+++.+...+.        .......+.|+.++++++.+++. +.   ....  ..+++|+.|++.+|.
T Consensus       206 N-~i~~~~~~~l~--------~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~--~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          206 N-LLGLKSYAELA--------YIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLK--DSLKHLQTVYLDYDI  264 (362)
T ss_dssp             S-CGGGSCHHHHH--------HHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTT--TTTTTCSEEEEEHHH
T ss_pred             C-CCChhHHHHHH--------HHHhcCCCCceEEECcCCCCCcH-HHHHHHHHH--hcCCCccEEEeccCC
Confidence            6 67776655543        22223345777777777777665 32   2222  566777777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=1.1e-12  Score=113.57  Aligned_cols=201  Identities=18%  Similarity=0.155  Sum_probs=142.0

Q ss_pred             HhcCCCCccEEecCCccCcchh--hH-HHhccccCC-CccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCC
Q 023841           52 LVSYPSLWLVIDLREMNNAGNR--LV-AALSIPRYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI  127 (276)
Q Consensus        52 ~~~~~~~~~~l~l~~~~~~~~~--~l-~~l~~~~~~-~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l  127 (276)
                      +...++.++.++++++......  .+ ..  +..++ +|++|+++++ .+++.+...+.......+++|++|++++| .+
T Consensus        17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l   92 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNNLYSISTVELIQA--FANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FL   92 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHH--HHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred             HHhCCCCceEEEccCCCCChHHHHHHHHH--HHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cC
Confidence            4556677999999998754322  11 22  24677 9999999995 78877777777654333489999999996 67


Q ss_pred             CHHHHHHHH---hhC-CCCCeEeccCCCCcCHHHHHHHHHh----CCCCcEEecCCCCCCCHHHHHHHHh---cCC-Ccc
Q 023841          128 SDKGIEIIS---STC-PELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQ-ELE  195 (276)
Q Consensus       128 ~~~~~~~l~---~~~-~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~ltd~~~~~l~~---~~~-~L~  195 (276)
                      ++.+...++   ..+ ++|++|++++| .+++.+...++..    +++|++|++++| .+++.++..+..   ..+ +|+
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence            765554443   334 89999999987 5777666665543    569999999997 788766655543   354 999


Q ss_pred             EEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCC-CccceecccccCCCCCcceeEEEee-cc-CCCCceeeeecce
Q 023841          196 SLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIET-NT-YKHGKEKHIIETI  269 (276)
Q Consensus       196 ~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~-~~-~~~L~~l~~~~~~  269 (276)
                      +|++++| .+++.+...++.         .+..+ +.|+.++++++.+++. +...+... .. +++|++|++.++.
T Consensus       171 ~L~Ls~n-~l~~~~~~~l~~---------~l~~~~~~L~~L~Ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          171 SLNLRGN-NLASKNCAELAK---------FLASIPASVTSLDLSANLLGLK-SYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             EEECTTS-CGGGSCHHHHHH---------HHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             EeeecCC-CCchhhHHHHHH---------HHHhCCCCCCEEECCCCCCChh-HHHHHHHHHhcCCCCceEEECcCCC
Confidence            9999998 788877665531         33445 5899999999998775 33322210 22 5699999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.36  E-value=3.7e-11  Score=94.05  Aligned_cols=124  Identities=16%  Similarity=0.105  Sum_probs=105.1

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIG  157 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~  157 (276)
                      ..+++|++|+++++..+++.+...++..... .++|++|++++| .+++.+...++.   ..+.|++|+|++| .+++.+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g  109 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG  109 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence            6789999999998658999999999987743 589999999995 899999877765   4578999999987 899999


Q ss_pred             HHHHHHh---CCCCcEEec--CCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCCHHH
Q 023841          158 IQHLVKN---CKHIIDLNL--SGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG  209 (276)
Q Consensus       158 l~~l~~~---~~~L~~L~l--~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~~~  209 (276)
                      +..++..   ++.|++|++  +++ .+++++...++.   ..++|++|++++| .+++.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~  167 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL  167 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence            8888754   568999999  664 899999777665   4789999999997 788876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.25  E-value=1.4e-10  Score=90.69  Aligned_cols=122  Identities=17%  Similarity=0.117  Sum_probs=99.8

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH
Q 023841          112 SLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQ  185 (276)
Q Consensus       112 ~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~  185 (276)
                      ..++|++|++++|..+++.++..++.   .+++|++|+|++| .+++++...++.   ..+.|++|++++| .+++.|+.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence            35899999999954899999887765   3678999999998 799999877754   4579999999997 89999998


Q ss_pred             HHHh---cCCCccEEec--CCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          186 LIAD---NYQELESLNL--TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       186 ~l~~---~~~~L~~L~l--~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      .++.   ..++|++|++  +++ .++++|...++.         .....+.|+.++++++.+++.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~---------~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN---------MLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH---------HHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH---------HHHhCCCcCEEeccCCCCChH
Confidence            8876   4678999999  776 899999888753         344567788999988876554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.01  E-value=1.1e-10  Score=92.11  Aligned_cols=60  Identities=20%  Similarity=0.260  Sum_probs=24.7

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                      +++|++|+++++ .+++.....+. .+++|+.|+++++ .+++.....+. .+++|++|++++|
T Consensus        87 l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n  146 (197)
T 4ezg_A           87 LSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYN  146 (197)
T ss_dssp             CTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSC
T ss_pred             CCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCC
Confidence            345555555552 34332222222 2444444444443 33333333332 3444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=2.4e-09  Score=92.42  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             HhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCC--CCH
Q 023841           52 LVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK--ISD  129 (276)
Q Consensus        52 ~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~--l~~  129 (276)
                      +...++.+++|.+.++....   +..   -..++|++|++..| .+++..+..+...   .+|+|++|+++.+.+  ..+
T Consensus       167 ll~~~P~L~~L~L~g~~~l~---l~~---~~~~~L~~L~L~~~-~l~~~~l~~l~~~---~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS---IGK---KPRPNLKSLEIISG-GLPDSVVEDILGS---DLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB---CCS---CBCTTCSEEEEECS-BCCHHHHHHHHHS---BCTTCCEEEEECBCGGGTCC
T ss_pred             HHhcCCCCcEEEEeCCCCce---ecc---ccCCCCcEEEEecC-CCChHHHHHHHHc---cCCCCcEEEEeccccccccc
Confidence            34555677777776542111   111   13678888888864 6788888877652   258888888853211  111


Q ss_pred             H---HHHHHH--hhCCCCCeEeccCCCCcCHHHHHHHHH--hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEec
Q 023841          130 K---GIEIIS--STCPELKVFSIYWNVRVTDIGIQHLVK--NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNL  199 (276)
Q Consensus       130 ~---~~~~l~--~~~~~L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l  199 (276)
                      .   ++..+.  ..+|+|+.|+|.+| .+++.+...++.  .+++|++|+++.+ .+++.+...+..   ++++|++|++
T Consensus       237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          237 GDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             SCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             hhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEEC
Confidence            1   122221  24788999999877 677766666654  4678999999874 788888877764   4788999999


Q ss_pred             CCCCCCCHHHHHHHHh
Q 023841          200 TRYVNMILLGLFYIWS  215 (276)
Q Consensus       200 ~~c~~it~~~l~~l~~  215 (276)
                      ++| .++++++..+..
T Consensus       315 ~~n-~i~d~~~~~l~~  329 (362)
T 2ra8_A          315 KYN-YLSDEMKKELQK  329 (362)
T ss_dssp             CSB-BCCHHHHHHHHH
T ss_pred             CCC-cCCHHHHHHHHH
Confidence            887 688888887764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=6.4e-11  Score=102.24  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=61.1

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHh-hCCCCCeEeccCCCC--cCHHHH---HHHH--HhCCCCcEEecCCCCCCCHHHHH
Q 023841          114 QDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVR--VTDIGI---QHLV--KNCKHIIDLNLSGCKNLLDKSLQ  185 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~-~~~~L~~L~L~~~~~--l~~~~l---~~l~--~~~~~L~~L~l~~c~~ltd~~~~  185 (276)
                      ++|++|++..| .+++.++..++. .+|+|++|+|+.+.+  ..+.++   ..+.  ..+|+|++|++++| .+++.+..
T Consensus       193 ~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~  270 (362)
T 2ra8_A          193 PNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVE  270 (362)
T ss_dssp             TTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHH
T ss_pred             CCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHH
Confidence            56666666653 566666665553 466666666542110  011111   1111  23566666666664 55555555


Q ss_pred             HHHh--cCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          186 LIAD--NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       186 ~l~~--~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      .++.  .+|+|++|+|+.+ .+++.|...+..         ....++.|+.+++..+.+++.
T Consensus       271 ~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~---------~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAG-VLTDEGARLLLD---------HVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT---------THHHHTTCSEEECCSBBCCHH
T ss_pred             HHHhCccCCCCCEEECCCC-CCChHHHHHHHh---------hcccCCcceEEECCCCcCCHH
Confidence            5543  3556666666654 566666555431         112345566666655555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.97  E-value=2.6e-09  Score=91.39  Aligned_cols=125  Identities=18%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|++|++++| .+++...   ...+++|++|+++++ .+++-  .. ...+++|+.|++++| .+++-  . ....++
T Consensus       220 ~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~  287 (347)
T 4fmz_A          220 MTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDI--S-VLNNLS  287 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--G-GGGGCT
T ss_pred             CCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCC--h-hhcCCC
Confidence            356666666664 3433221   334666666666665 33331  11 235666777777665 34332  1 123466


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +|+.|++++| .+++....             .+.+++.|+.++++++.+.+...    .  ..+++|+.|++.++.
T Consensus       288 ~L~~L~L~~n-~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~----~--~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          288 QLNSLFLNNN-QLGNEDME-------------VIGGLTNLTTLFLSQNHITDIRP----L--ASLSKMDSADFANQV  344 (347)
T ss_dssp             TCSEEECCSS-CCCGGGHH-------------HHHTCTTCSEEECCSSSCCCCGG----G--GGCTTCSEESSSCC-
T ss_pred             CCCEEECcCC-cCCCcChh-------------HhhccccCCEEEccCCccccccC----h--hhhhccceeehhhhc
Confidence            7777777776 45543322             34567888899998888776633    2  678899999888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.95  E-value=3e-10  Score=89.59  Aligned_cols=154  Identities=16%  Similarity=0.156  Sum_probs=107.9

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      .+++|++|+++++ .+++-.  .+ .    .+++|++|++++| .+++.  ..+ ..+++|++|+++++ .+++.....+
T Consensus        42 ~l~~L~~L~l~~n-~i~~l~--~l-~----~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~~l  108 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDLT--GI-E----YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIPNL  108 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCCT--TG-G----GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSCCC
T ss_pred             hcCCccEEeccCC-CccChH--HH-h----cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccChhh
Confidence            4567788888774 443211  11 1    2488999999886 55543  223 34899999999987 6765544444


Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      . .+++|++|++++| .+++.....+. .+++|+.|++++|..+++..               .+.+++.|+.++++++.
T Consensus       109 ~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---------------~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          109 S-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---------------PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             T-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---------------GGGGCSSCCEEECTTBC
T ss_pred             c-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---------------hhcCCCCCCEEECCCCC
Confidence            4 7899999999997 77776666555 58999999999984365521               35678999999999999


Q ss_pred             CCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          242 GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      +.+...    +  ..+++|+.|++.+.. ||+
T Consensus       171 i~~~~~----l--~~l~~L~~L~l~~N~-i~~  195 (197)
T 4ezg_A          171 VHDYRG----I--EDFPKLNQLYAFSQT-IGG  195 (197)
T ss_dssp             CCCCTT----G--GGCSSCCEEEECBC-----
T ss_pred             CcChHH----h--ccCCCCCEEEeeCcc-cCC
Confidence            887632    2  678999999998643 443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.94  E-value=3.7e-08  Score=77.03  Aligned_cols=130  Identities=15%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccC
Q 023841           73 RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW  149 (276)
Q Consensus        73 ~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~  149 (276)
                      ..+..+. ...+.|++|+++++..+.+.+...|++... ....|+.|++++| .+.|.+..+++.   .-+.|++|+|++
T Consensus        31 ~~l~~ll-~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           31 SCINRLR-EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             HHHHHHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHH-hcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence            3444443 678899999999855899999999999885 4588999999995 999999777765   346799999998


Q ss_pred             CCCcCHHHHHHHHHhC---CCCcEEecCCCC--CCCHHHHHHHHh---cCCCccEEecCCCCCCCH
Q 023841          150 NVRVTDIGIQHLVKNC---KHIIDLNLSGCK--NLLDKSLQLIAD---NYQELESLNLTRYVNMIL  207 (276)
Q Consensus       150 ~~~l~~~~l~~l~~~~---~~L~~L~l~~c~--~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~  207 (276)
                      + .|++.+...++..+   +.|++|+++++.  .+++.+...++.   .-+.|+.|+++++ .+..
T Consensus       108 N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g~  171 (197)
T 1pgv_A          108 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SMEA  171 (197)
T ss_dssp             S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHHH
T ss_pred             C-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-CccH
Confidence            7 89999999998765   479999999753  678887666554   5788999999875 4443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.93  E-value=2.1e-09  Score=90.74  Aligned_cols=148  Identities=14%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .+++.  ..     ...+++|++|+++++ .+++..  . ...+++|++|+++++ .++.-.  .
T Consensus        82 ~~l~~L~~L~L~~n-~l~~~--~~-----~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~  146 (308)
T 1h6u_A           82 KNLTKITELELSGN-PLKNV--SA-----IAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNIS--P  146 (308)
T ss_dssp             TTCCSCCEEECCSC-CCSCC--GG-----GTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCG--G
T ss_pred             ccCCCCCEEEccCC-cCCCc--hh-----hcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCc--c
Confidence            45556666666653 23221  01     123456666666663 444321  1 234566666666654 333211  1


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                       ...+++|++|++++| .+++-..   ...+++|+.|+++++ .+++..               ....++.|+.++++.+
T Consensus       147 -l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~---------------~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          147 -LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDIS---------------PLASLPNLIEVHLKNN  205 (308)
T ss_dssp             -GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG---------------GGGGCTTCCEEECTTS
T ss_pred             -ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcCh---------------hhcCCCCCCEEEccCC
Confidence             235566666666665 3332111   234666666666665 443311               1456778888888888


Q ss_pred             CCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          241 NGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      .+.+...    +  ..+++|+.|++.++.-
T Consensus       206 ~l~~~~~----l--~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          206 QISDVSP----L--ANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCBCGG----G--TTCTTCCEEEEEEEEE
T ss_pred             ccCcccc----c--cCCCCCCEEEccCCee
Confidence            8766532    2  6788999998887763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.85  E-value=1.6e-10  Score=96.36  Aligned_cols=185  Identities=10%  Similarity=0.089  Sum_probs=99.5

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.++++++......   .-.+..+++|++|+++++..++......     ...+++|++|+++++ .++..... .
T Consensus        55 ~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~-~  124 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSDNAQLRSVDPAT-----FHGLGRLHTLHLDRC-GLQELGPG-L  124 (285)
T ss_dssp             CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSCTTCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTT-T
T ss_pred             CCCCCEEECCCCccceeC---HhhcCCccCCCEEeCCCCCCccccCHHH-----hcCCcCCCEEECCCC-cCCEECHh-H
Confidence            445666666665433211   0112456777777777653232211111     123467777777774 44432111 1


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ...+++|++|+++++ .++...... ...+++|++|+++++ .+++-.... ...+++|+.|+++++ .+++..      
T Consensus       125 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~------  193 (285)
T 1ozn_A          125 FRGLAALQYLYLQDN-ALQALPDDT-FRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQN-RVAHVH------  193 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEEC------
T ss_pred             hhCCcCCCEEECCCC-cccccCHhH-hccCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCC-cccccC------
Confidence            234677777777765 333211111 235677777777775 444211111 224677777777776 444321      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                             ...+..++.|+.++++.+.+.+. .. ..+  ..+++|+.|++.+++-..
T Consensus       194 -------~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~--~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          194 -------PHAFRDLGRLMTLYLFANNLSAL-PT-EAL--APLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCSCC-CH-HHH--TTCTTCCEEECCSSCEEC
T ss_pred             -------HhHccCcccccEeeCCCCcCCcC-CH-HHc--ccCcccCEEeccCCCccC
Confidence                   11345677888888888877654 21 122  578899999988876554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.84  E-value=3.4e-10  Score=95.70  Aligned_cols=186  Identities=10%  Similarity=-0.008  Sum_probs=102.3

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~--~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .++.++++++........ .+....+++|++|+++++ .++...  +....  . ..+++|++|+++++ .++......+
T Consensus        92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~--~-~~~~~L~~L~Ls~n-~l~~~~~~~~  165 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNV-SWATGRSWLAELQ--Q-WLKPGLKVLSIAQA-HSPAFSCEQV  165 (310)
T ss_dssp             CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH--T-TBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred             ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecc-cccchhhhhHHHH--h-hhccCCCEEEeeCC-CcchhhHHHh
Confidence            477777776654321110 010045778888888874 444311  01111  0 13578888888884 5543221122


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHH--HHHhCCCCcEEecCCCCCCC--HHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQH--LVKNCKHIIDLNLSGCKNLL--DKSLQLIADNYQELESLNLTRYVNMILLGLF  211 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~  211 (276)
                       ..+++|++|+++++.-.++.++..  ....+++|++|++++| .++  ......+...+++|++|+++++ .+++..-.
T Consensus       166 -~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~  242 (310)
T 4glp_A          166 -RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP  242 (310)
T ss_dssp             -CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS
T ss_pred             -ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh
Confidence             247788888888763233333321  1236778888888886 555  3333334556788888888886 45432100


Q ss_pred             HHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .+          ....+++.|+.++++++.+... +-      ..+++|+.|++..+.
T Consensus       243 ~~----------~~~~~~~~L~~L~Ls~N~l~~l-p~------~~~~~L~~L~Ls~N~  283 (310)
T 4glp_A          243 SA----------PRCMWSSALNSLNLSFAGLEQV-PK------GLPAKLRVLDLSSNR  283 (310)
T ss_dssp             CC----------SSCCCCTTCCCEECCSSCCCSC-CS------CCCSCCSCEECCSCC
T ss_pred             hH----------HhccCcCcCCEEECCCCCCCch-hh------hhcCCCCEEECCCCc
Confidence            00          0122336888888888877632 11      123788888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.83  E-value=1.2e-08  Score=85.48  Aligned_cols=165  Identities=18%  Similarity=0.167  Sum_probs=107.1

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.++++++.......     +..+++|++|+++++ .+++..-       ...+++|+.|+++++ .+++.  .. ..
T Consensus        47 ~L~~L~l~~~~i~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~~--~~-l~  109 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLFLDEN-KVKDL--SS-LK  109 (291)
T ss_dssp             TCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCG--GG-GT
T ss_pred             cccEEEccCCCcccChh-----HhcCCCCCEEEccCC-ccCCCcc-------cccCCCCCEEECCCC-cCCCC--hh-hc
Confidence            46777877765443221     356888999999885 4443211       134588999999885 56552  22 34


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  217 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~  217 (276)
                      .+++|++|+++++ .+++  +..+ ..+++|++|++++| .+++-  . ....+++|+.|++++| .+++..        
T Consensus       110 ~l~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~N-~l~~~~--------  172 (291)
T 1h6t_A          110 DLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDN-QISDIV--------  172 (291)
T ss_dssp             TCTTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSS-CCCCCG--------
T ss_pred             cCCCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEccCC-cCCcc--h-hhccCCCCCEEEccCC-ccccch--------
Confidence            5788899998877 4544  2223 36788999998886 45432  2 2335888899998887 555421        


Q ss_pred             chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             ....++.|+.++++++.+.+...    +  ..+++|+.|++.++.
T Consensus       173 -------~l~~l~~L~~L~L~~N~i~~l~~----l--~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 -------PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQE  211 (291)
T ss_dssp             -------GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEEEEEEE
T ss_pred             -------hhcCCCccCEEECCCCcCCCChh----h--ccCCCCCEEECcCCc
Confidence                   14567788888888887765421    2  677888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.82  E-value=1.1e-08  Score=87.40  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=89.3

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.++++++.......     +..+++|++|+++++ .+++.  ..     ...+++|++|+++++ .+++...   
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n-~i~~~--~~-----~~~l~~L~~L~l~~n-~i~~~~~---  127 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTN-KITDI--SA-----LQNLTNLRELYLNED-NISDISP---  127 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCC--GG-----GTTCTTCSEEECTTS-CCCCCGG---
T ss_pred             cCCccEEEccCCccccchh-----hhcCCcCCEEEccCC-cccCc--hH-----HcCCCcCCEEECcCC-cccCchh---
Confidence            3445555555543322111     245566666666664 33321  11     123466666666664 4443221   


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHH-HHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGL-FYIW  214 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l-~~l~  214 (276)
                      ...+++|+.|++++|..+++.  .. ...+++|++|++++|. +++...   ...+++|+.|++++| .+++... ..+.
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~  199 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLNYN-QIEDISPLASLT  199 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECTTS-CCCCCGGGGGCT
T ss_pred             hccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEccCC-cccccccccCCC
Confidence            334666666666665433321  11 2356667777776652 321111   335677777777776 4443211 1000


Q ss_pred             h------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          215 S------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       215 ~------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .      .............++.|+.++++++.+.+...    +  ..+++|+.|++.++.
T Consensus       200 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----L--ANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred             ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc----h--hcCCCCCEEECCCCc
Confidence            0      00000000014566777777777776655422    2  577788888877663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.80  E-value=5.7e-10  Score=92.52  Aligned_cols=179  Identities=14%  Similarity=0.102  Sum_probs=111.1

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ..++.+++.++.......     +..+++|++|+++++ .+++.  ..     ...+++|++|+++++ .++...-. ..
T Consensus        41 ~~L~~L~l~~~~i~~~~~-----l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~l~~~~~~-~~  105 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGN-KLHDI--SA-----LKELTNLTYLILTGN-QLQSLPNG-VF  105 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT-----GGGCTTCCEEECTTS-CCCCC--GG-----GTTCTTCCEEECTTS-CCCCCCTT-TT
T ss_pred             cceeeeeeCCCCcccccc-----cccCCCCcEEECCCC-CCCCc--hh-----hcCCCCCCEEECCCC-ccCccChh-Hh
Confidence            356777777765433221     357889999999985 44431  11     234689999999985 55532211 12


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                      ..+++|++|+++++ .++... ......+++|++|++++| .++.-.. .....+++|+.|++++| .+++..       
T Consensus       106 ~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-------  173 (272)
T 3rfs_A          106 DKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLP-------  173 (272)
T ss_dssp             TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-------
T ss_pred             cCCcCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccC-------
Confidence            34788999999876 454211 111236789999999987 4542111 11235788999999997 555311       


Q ss_pred             CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                            ...+.+++.|+.+++..+.+.....  ..+  ..+++|+.|++.+++-.+
T Consensus       174 ------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          174 ------EGVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             ------TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSCBCC
T ss_pred             ------HHHhcCCccCCEEECCCCcCCccCH--HHH--hCCcCCCEEEccCCCccc
Confidence                  1134567888888888777664421  112  567888888888766444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.79  E-value=3.2e-09  Score=89.77  Aligned_cols=143  Identities=16%  Similarity=0.117  Sum_probs=77.1

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHH--HHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR--HLELLKTKCLGSLQDLESLNLNGCQKISDKGI  132 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~  132 (276)
                      ..+.++.++++++...+... ..+....+++|++|+++++ .++..  .+..+...   ..++|++|+++++ .++....
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~---~~~~L~~L~L~~N-~l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAP-PPLLEATGPDLNILNLRNV-SWATRDAWLAELQQW---LKPGLKVLSIAQA-HSLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCC-CCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTT---CCTTCCEEEEESC-SCCCCCT
T ss_pred             CcCCccEEEccCCcccchhH-HHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHh---hcCCCcEEEeeCC-CCccchH
Confidence            35678888888765442111 1111257788999999884 44432  22233221   1367777777774 4443222


Q ss_pred             HHHHhhCCCCCeEeccCCCCcCHH-HH-HHH-HHhCCCCcEEecCCCCCCCH--HHHHHHHhcCCCccEEecCCCCCCCH
Q 023841          133 EIISSTCPELKVFSIYWNVRVTDI-GI-QHL-VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~~~l~~~-~l-~~l-~~~~~~L~~L~l~~c~~ltd--~~~~~l~~~~~~L~~L~l~~c~~it~  207 (276)
                      ..+ ..+++|++|+++++. ++.. .+ ..+ ...+++|++|++++| .++.  .....+...+++|+.|+++++ .+++
T Consensus       167 ~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~  242 (312)
T 1wwl_A          167 EQV-RVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRD  242 (312)
T ss_dssp             TTC-CCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred             HHh-ccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCc
Confidence            222 236677777777663 3322 22 122 145677777777775 4542  223344445677777777775 4444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=1.4e-08  Score=85.67  Aligned_cols=165  Identities=12%  Similarity=0.122  Sum_probs=118.5

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.++++++......   .  +..+++|++|+++++ .+++..-  +     ..+++|++|+++++ .++..  .. ..
T Consensus        42 ~L~~L~l~~~~i~~l~---~--~~~l~~L~~L~L~~n-~i~~~~~--~-----~~l~~L~~L~L~~n-~l~~~--~~-~~  104 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE---G--VQYLNNLIGLELKDN-QITDLAP--L-----KNLTKITELELSGN-PLKNV--SA-IA  104 (308)
T ss_dssp             TCCEEECTTSCCCCCT---T--GGGCTTCCEEECCSS-CCCCCGG--G-----TTCCSCCEEECCSC-CCSCC--GG-GT
T ss_pred             CcCEEEeeCCCccCch---h--hhccCCCCEEEccCC-cCCCChh--H-----ccCCCCCEEEccCC-cCCCc--hh-hc
Confidence            5778888877544322   1  357899999999986 4443221  1     34699999999995 56653  22 34


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  217 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~  217 (276)
                      .+++|++|+++++ .+++-  .. ...+++|++|++++| .+++...   ...+++|+.|++++| .+++..        
T Consensus       105 ~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~--------  167 (308)
T 1h6u_A          105 GLQSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLT--------  167 (308)
T ss_dssp             TCTTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCG--------
T ss_pred             CCCCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCCh--------
Confidence            5899999999987 55542  22 347899999999997 4543221   446899999999998 665421        


Q ss_pred             chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             .+..++.|+.++++.+.+.+...    +  ..+++|+.|++.++.
T Consensus       168 -------~l~~l~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          168 -------PLANLSKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             -------GGTTCTTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTSC
T ss_pred             -------hhcCCCCCCEEECCCCccCcChh----h--cCCCCCCEEEccCCc
Confidence                   15678899999999998876633    3  689999999999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.78  E-value=2.5e-10  Score=95.23  Aligned_cols=182  Identities=13%  Similarity=0.057  Sum_probs=114.5

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......   .-.+..+++|++|+++++ .++......     ...+++|++|+++++..++...... 
T Consensus        31 ~~~l~~L~l~~n~i~~~~---~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~~l~~~~~~~-  100 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSN-VLARIDAAA-----FTGLALLEQLDLSDNAQLRSVDPAT-  100 (285)
T ss_dssp             CTTCSEEECTTSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSCTTCCCCCTTT-
T ss_pred             CCCceEEEeeCCcCCccC---HHHcccCCCCCEEECCCC-ccceeCHhh-----cCCccCCCEEeCCCCCCccccCHHH-
Confidence            456778888876544321   112367889999999985 444321111     1345899999999863244432222 


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ...+++|++|+++++ .++..... ....+++|++|+++++ .++..... ....+++|++|+++++ .++...      
T Consensus       101 ~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~------  169 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRC-GLQELGPG-LFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLFLHGN-RISSVP------  169 (285)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCEEC------
T ss_pred             hcCCcCCCEEECCCC-cCCEECHh-HhhCCcCCCEEECCCC-cccccCHh-HhccCCCccEEECCCC-cccccC------
Confidence            234789999999986 44432111 2346889999999986 44422111 1235889999999997 565321      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             ...+.+++.|+.++++++.+.+.. . ..+  ..+++|+.|++.++.
T Consensus       170 -------~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~--~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          170 -------ERAFRGLHSLDRLLLHQNRVAHVH-P-HAF--RDLGRLMTLYLFANN  212 (285)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCCEEC-T-TTT--TTCTTCCEEECCSSC
T ss_pred             -------HHHhcCccccCEEECCCCcccccC-H-hHc--cCcccccEeeCCCCc
Confidence                   113566889999999888765431 1 122  578999999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.78  E-value=1e-08  Score=94.35  Aligned_cols=167  Identities=19%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.|+++.+......     .+..+++|+.|+++++ .+++..-  +     ..+++|+.|+++++ .++..  .. ..
T Consensus        44 ~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N-~l~~~~~--l-----~~l~~L~~L~Ls~N-~l~~l--~~-l~  106 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGN-KLTDIKP--L-----TNLKNLGWLFLDEN-KIKDL--SS-LK  106 (605)
T ss_dssp             TCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSS-CCCCC--TT-ST
T ss_pred             CCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCC-CCCCChh--h-----ccCCCCCEEECcCC-CCCCC--hh-hc
Confidence            4555666665433221     1356788888888875 3332111  1     23578888888885 55542  12 23


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  217 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~  217 (276)
                      .+++|+.|+|+++ .+++  +..+ ..+++|+.|++++| .+++.   .....+++|+.|+|++| .+++..        
T Consensus       107 ~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~--------  169 (605)
T 1m9s_A          107 DLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV--------  169 (605)
T ss_dssp             TCTTCCEEECTTS-CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCG--------
T ss_pred             cCCCCCEEEecCC-CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCch--------
Confidence            4778888888876 4443  2223 36788888888886 45432   22335788888888886 454321        


Q ss_pred             chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                             .+..++.|+.|+++.+.+.+...    +  ..+++|+.|++.++.-.
T Consensus       170 -------~l~~l~~L~~L~Ls~N~i~~l~~----l--~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          170 -------PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -------GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEECCSEEEE
T ss_pred             -------hhccCCCCCEEECcCCCCCCChH----H--ccCCCCCEEEccCCcCc
Confidence                   14567778888887777655411    2  56778888888776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.77  E-value=9.9e-10  Score=90.92  Aligned_cols=182  Identities=14%  Similarity=0.126  Sum_probs=105.4

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......   .-.+..+++|++|+++++ .++.     +.......+++|++|+++++ .++..... .
T Consensus        36 ~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~-----i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~  104 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDN-KLQT-----LPAGIFKELKNLETLWVTDN-KLQALPIG-V  104 (270)
T ss_dssp             CTTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSS-CCSC-----CCTTTTSSCTTCCEEECCSS-CCCCCCTT-T
T ss_pred             CCCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCC-ccCe-----eChhhhcCCCCCCEEECCCC-cCCcCCHh-H
Confidence            345667777765433211   112356788888888874 3331     11111134588888888884 55432221 2


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ...+++|++|+++++ .++...... ...+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...      
T Consensus       105 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~------  173 (270)
T 2o6q_A          105 FDQLVNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVP------  173 (270)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC------
T ss_pred             cccccCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeC------
Confidence            234788888888875 343221111 236788888888886 4442111 11235788888888886 454311      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                             ...+.+++.|+.++++.+.+... .. ..+  ..+++|+.|.+.+++-
T Consensus       174 -------~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          174 -------EGAFDKLTELKTLKLDNNQLKRV-PE-GAF--DSLEKLKMLQLQENPW  217 (270)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCSCC-CT-TTT--TTCTTCCEEECCSSCB
T ss_pred             -------hhHhccCCCcCEEECCCCcCCcC-CH-HHh--ccccCCCEEEecCCCe
Confidence                   11345677888888877776543 11 112  5678888888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.73  E-value=3.4e-08  Score=88.05  Aligned_cols=40  Identities=5%  Similarity=-0.028  Sum_probs=28.3

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      +..++.|+.++++++.+.+...    .  ..+++|+.|.+.+|.-.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP----L--ANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG----G--TTCTTCCEEECCCEEEE
T ss_pred             hccCCCCCEEeCCCCccCccch----h--hcCCCCCEEeccCCccc
Confidence            4567788888888777765532    2  67888888888877543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.73  E-value=6.5e-09  Score=77.93  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=15.7

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      .+++|++|++++| .+++.........+++|++|++++|
T Consensus        86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence            3445555555543 3333211111223445555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.72  E-value=5.6e-08  Score=72.74  Aligned_cols=135  Identities=16%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841           53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI  132 (276)
Q Consensus        53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~  132 (276)
                      ...++.++.++++++....... .. .+..+++|+.|+++++ .+++.       .....+++|+.|+++++ .++.. +
T Consensus        13 ~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~-~   80 (149)
T 2je0_A           13 NRTPSDVKELVLDNSRSNEGKL-EG-LTDEFEELEFLSTINV-GLTSI-------ANLPKLNKLKKLELSDN-RVSGG-L   80 (149)
T ss_dssp             TCCGGGCSEEECTTCBCBTTBC-CS-CCTTCTTCCEEECTTS-CCCCC-------TTCCCCTTCCEEECCSS-CCCSC-T
T ss_pred             cCCCccCeEEEccCCcCChhHH-HH-HHhhcCCCcEEECcCC-CCCCc-------hhhhcCCCCCEEECCCC-cccch-H
Confidence            3445778999999876541111 11 2367899999999986 55543       12345799999999995 66653 3


Q ss_pred             HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCccEEecCC
Q 023841          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTR  201 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~--~~l~~~~~~L~~L~l~~  201 (276)
                      ......+++|++|+++++ .+++-........+++|++|++++| .+++...  ......+++|+.|+++.
T Consensus        81 ~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           81 EVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            345556999999999987 5766433233458999999999997 5554322  23445699999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.72  E-value=4.6e-10  Score=86.10  Aligned_cols=138  Identities=22%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ...++|++|+++++ .+++..+.....    .+++|+.|++++| .++..   .....+++|++|+++++ .++.. +..
T Consensus        21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~----~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~   89 (168)
T 2ell_A           21 RTPAAVRELVLDNC-KSNDGKIEGLTA----EFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDM   89 (168)
T ss_dssp             SCTTSCSEEECCSC-BCBTTBCSSCCG----GGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCH
T ss_pred             CCcccCCEEECCCC-CCChhhHHHHHH----hCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHH
Confidence            44577888888875 344211111112    2377888888875 55553   22334677888888776 44432 333


Q ss_pred             HHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  239 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~  239 (276)
                      +...+++|+.|++++| .+++- .+.. ...+++|+.|++++| .++...-          .+...+..++.|+.+++..
T Consensus        90 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~-l~~l~~L~~L~l~~N-~l~~~~~----------~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGN-KLKDISTLEP-LKKLECLKSLDLFNC-EVTNLND----------YRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             HHHHCTTCCEEECBSS-SCCSSGGGGG-GSSCSCCCEEECCSS-GGGTSTT----------HHHHHHTTCSSCCEETTEE
T ss_pred             HHhhCCCCCEEeccCC-ccCcchhHHH-HhcCCCCCEEEeeCC-cCcchHH----------HHHHHHHhCccCcEecCCC
Confidence            4445778888888776 45442 1222 234777888888776 4433210          0112455666777777655


Q ss_pred             cCC
Q 023841          240 SNG  242 (276)
Q Consensus       240 ~~~  242 (276)
                      +.+
T Consensus       157 n~~  159 (168)
T 2ell_A          157 RED  159 (168)
T ss_dssp             TTS
T ss_pred             CCh
Confidence            554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.71  E-value=1.9e-09  Score=91.02  Aligned_cols=184  Identities=13%  Similarity=0.020  Sum_probs=118.5

Q ss_pred             cCCCCccEEecCCccCcch-hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH-HH
Q 023841           54 SYPSLWLVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KG  131 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~-~~  131 (276)
                      ...+.++.++++++..... ..+.......+++|++|+++++ .++...     ......+++|++|+++++ .+.. .+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~  186 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFS-----CEQVRAFPALTSLDLSDN-PGLGERG  186 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCC-----TTSCCCCTTCCEEECCSC-TTCHHHH
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccchhh-----HHHhccCCCCCEEECCCC-CCccchh
Confidence            3345677788887765432 1122233357899999999985 443211     111235689999999995 5543 33


Q ss_pred             HHH--HHhhCCCCCeEeccCCCCcC--HHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh--cCCCccEEecCCCCCC
Q 023841          132 IEI--ISSTCPELKVFSIYWNVRVT--DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNM  205 (276)
Q Consensus       132 ~~~--l~~~~~~L~~L~L~~~~~l~--~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~--~~~~L~~L~l~~c~~i  205 (276)
                      +..  ....+++|++|++++| .++  ......+...+++|++|+++++ .+++.....+..  .+++|++|+++++ .+
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l  263 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GL  263 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CC
T ss_pred             hhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CC
Confidence            321  1246899999999998 666  3333445568899999999997 554332111121  1379999999997 66


Q ss_pred             CHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          206 ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       206 t~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +.  +.       .       .-++.|+.++++++.+.....    .  ..+++|+.|++.+.+
T Consensus       264 ~~--lp-------~-------~~~~~L~~L~Ls~N~l~~~~~----~--~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          264 EQ--VP-------K-------GLPAKLRVLDLSSNRLNRAPQ----P--DELPEVDNLTLDGNP  305 (310)
T ss_dssp             CS--CC-------S-------CCCSCCSCEECCSCCCCSCCC----T--TSCCCCSCEECSSTT
T ss_pred             Cc--hh-------h-------hhcCCCCEEECCCCcCCCCch----h--hhCCCccEEECcCCC
Confidence            52  11       1       113789999999998875311    2  678999999998654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.71  E-value=8.1e-10  Score=91.65  Aligned_cols=197  Identities=14%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.++++++.......   ..+..+++|++|+++++ .++......     ...+++|++|+++++ .++......+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~   96 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGN-PIQSLALGAF   96 (276)
T ss_dssp             CTTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred             CCCccEEECCCCcccccCH---hHhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEECCCC-ccCccChhhh
Confidence            3456777877765432211   12356788888888875 343211111     123578888888884 5554322222


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH---HHHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL---LGLFY  212 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~---~~l~~  212 (276)
                       ..+++|++|+++++ .++.-.-.. ...+++|++|+++++ .+++..+......+++|++|++++| .++.   ..+..
T Consensus        97 -~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  171 (276)
T 2z62_A           97 -SGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV  171 (276)
T ss_dssp             -TTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH
T ss_pred             -cCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh
Confidence             34778888888765 333211111 236778888888886 4443222222345788888888886 4543   23333


Q ss_pred             HHhcCc---------hhhHH--HHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          213 IWSNNI---------LLMSE--FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       213 l~~~~~---------~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      +..-..         ..+..  ........|+.++++++.+... .. ..+  ..+++|+.|++.+.+-.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-~~~--~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PD-GIF--DRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CT-TTT--TTCCSCCEEECCSSCBC
T ss_pred             hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-CH-hHh--cccccccEEEccCCccc
Confidence            321110         00000  0111223688888887776544 11 122  56889999999865543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.70  E-value=2.8e-07  Score=72.10  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHhhC---CCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH
Q 023841          112 SLQDLESLNLNGCQKISDKGIEIISSTC---PELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQ  185 (276)
Q Consensus       112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~---~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~  185 (276)
                      ..+.|++|++++.+.+.+++...++..+   ..|+.|+|++| .++|.+...++.   ..+.|++|+|+++ .|++.|..
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~  116 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA  116 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence            3489999999985589999988887755   46999999987 899999877764   4578999999995 89999999


Q ss_pred             HHHhc---CCCccEEecCCCC--CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          186 LIADN---YQELESLNLTRYV--NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       186 ~l~~~---~~~L~~L~l~~c~--~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      .|++.   .+.|+.|+|+++.  .+++++...++.         .+..-+.|+.+++.++.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~---------aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM---------AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH---------HHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH---------HHHhCCCcCeEeccCCC
Confidence            99874   3569999998752  578888776652         22333456666665444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.69  E-value=1.8e-09  Score=95.75  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=28.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHH-HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEI-ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~-l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                      +++|++|++++| .++...... ....+++|++|+++++ .++......+...+++|++|+++++
T Consensus       102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence            455666666663 444332221 1223555666666554 2332211111234555666665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.69  E-value=3.7e-10  Score=95.08  Aligned_cols=165  Identities=13%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .++.....    .....+++|++|+++++ .++..... ....+++|++|+++++ .+++..+..
T Consensus        98 ~~l~~L~~L~l~~n-~l~~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~  169 (306)
T 2z66_A           98 LGLEQLEHLDFQHS-NLKQMSEF----SVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPD  169 (306)
T ss_dssp             ETCTTCCEEECTTS-EEESSTTT----TTTTTCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTC-EEGGGEECS
T ss_pred             CCCCCCCEEECCCC-cccccccc----hhhhhccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCC-ccccccchh
Confidence            45666777776663 22211100    01123467777777774 43322111 1234677777777765 343321222


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                      ....+++|++|++++| .+++.....+ ..+++|+.|+++++ .+++..             ...+.+++.|+.++++++
T Consensus       170 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          170 IFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLD-------------TFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCSBCC-------------SGGGTTCTTCCEEECTTS
T ss_pred             HHhhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCC-ccCccC-------------hhhccCcccCCEeECCCC
Confidence            2335677888888776 4443211122 24677888888876 454311             113466788999999888


Q ss_pred             CCCCCcceeEEEeeccC-CCCceeeeecceeccc
Q 023841          241 NGGDHLAFAYIIETNTY-KHGKEKHIIETIKTGQ  273 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~  273 (276)
                      .+... ....+   ..+ ++|+.|++.+++-.+|
T Consensus       234 ~l~~~-~~~~~---~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          234 HIMTS-KKQEL---QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCBC-SSSSC---CCCCTTCCEEECTTCCEECS
T ss_pred             CCccc-CHHHH---HhhhccCCEEEccCCCeecc
Confidence            87654 22222   344 4899999988775544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.68  E-value=4.7e-08  Score=87.17  Aligned_cols=38  Identities=5%  Similarity=-0.081  Sum_probs=24.2

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      ...++.|+.++++.+.+.+...    +  ..+++|+.|++.+|.
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDVSS----L--ANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred             hccCccCCEeECCCCccCCchh----h--ccCCCCCEEeCCCCc
Confidence            3456677777776666554411    2  567788888877764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.68  E-value=1.2e-09  Score=97.81  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +..++.+++++........   -.+..+++|++|+++++ .++...-..     ...+++|++|+++++ .++...... 
T Consensus        31 ~~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-   99 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNLRTLGLRSN-RLKLIPLGV-   99 (477)
T ss_dssp             CTTCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCSCCTTS-
T ss_pred             CCCCcEEECCCCccceECH---hHccCCCCCCEEECCCC-ccCEeChhh-----hhCCccCCEEECCCC-cCCccCccc-
Confidence            3455666666654332110   11356677777777764 333211111     123467777777773 444322111 


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      ...+++|++|+++++ .++...-.. ...+++|++|+++++ .++...... ...+++|+.|++++| .++
T Consensus       100 ~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~  165 (477)
T 2id5_A          100 FTGLSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKC-NLT  165 (477)
T ss_dssp             STTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESC-CCS
T ss_pred             ccCCCCCCEEECCCC-ccccCChhH-ccccccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCC-cCc
Confidence            123677777777765 332211111 235667777777765 333211111 124667777777776 444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.67  E-value=3.8e-09  Score=89.30  Aligned_cols=168  Identities=16%  Similarity=0.114  Sum_probs=103.8

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH--HHHHHHh-hCCCCCeEeccCCCCcCHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK--GIEIISS-TCPELKVFSIYWNVRVTDIG  157 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~-~~~~L~~L~L~~~~~l~~~~  157 (276)
                      ..+++|++|+++++ .++...-..+.   ...+++|++|+++++ .++..  .+..+.. .+++|++|+++++ .++...
T Consensus        92 ~~l~~L~~L~L~~n-~l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~  165 (312)
T 1wwl_A           92 LGISGLQELTLENL-EVTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFS  165 (312)
T ss_dssp             HTTSCCCEEEEEEE-BCBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred             cCcCCccEEEccCC-cccchhHHHHH---HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccch
Confidence            36889999999985 44321111110   134699999999994 66654  2333322 1389999999987 454322


Q ss_pred             HHHHHHhCCCCcEEecCCCCCCCHHHHH-HH-HhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCcccee
Q 023841          158 IQHLVKNCKHIIDLNLSGCKNLLDKSLQ-LI-ADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAV  235 (276)
Q Consensus       158 l~~l~~~~~~L~~L~l~~c~~ltd~~~~-~l-~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l  235 (276)
                      ...+. .+++|++|+++++...++.++. .+ ...+++|++|++++| .++..+  .+.        .....+++.|+.+
T Consensus       166 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~--------~~~~~~l~~L~~L  233 (312)
T 1wwl_A          166 CEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPS--GVC--------SALAAARVQLQGL  233 (312)
T ss_dssp             TTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHH--HHH--------HHHHHTTCCCSEE
T ss_pred             HHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchH--HHH--------HHHHhcCCCCCEE
Confidence            22233 6889999999997433333332 22 156899999999998 676321  110        1234567788888


Q ss_pred             cccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          236 QINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       236 ~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +++.+.+.+..+... +  ..+++|+.|++.++.
T Consensus       234 ~Ls~N~l~~~~~~~~-~--~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          234 DLSHNSLRDAAGAPS-C--DWPSQLNSLNLSFTG  264 (312)
T ss_dssp             ECTTSCCCSSCCCSC-C--CCCTTCCEEECTTSC
T ss_pred             ECCCCcCCcccchhh-h--hhcCCCCEEECCCCc
Confidence            888777766421111 1  345777777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.65  E-value=4.5e-09  Score=93.10  Aligned_cols=39  Identities=8%  Similarity=0.093  Sum_probs=19.2

Q ss_pred             cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .++++|+.++++.+.+... .. ..+  ..+++|+.|++.+.+
T Consensus       252 ~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          252 DNLQSLVEINLAHNNLTLL-PH-DLF--TPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCTTCCEEECTTSCCCCC-CT-TTT--SSCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCCCCcc-Ch-hHh--ccccCCCEEEcCCCC
Confidence            3445555555555554432 11 111  345666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.63  E-value=1.4e-09  Score=96.69  Aligned_cols=191  Identities=16%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.++++++......   .-.+..+++|++|+++++ .++......     ...+++|++|+++++ .++...-.. .
T Consensus        75 ~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~  143 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRN-SIRQIEVGA-----FNGLASLNTLELFDN-WLTVIPSGA-F  143 (452)
T ss_dssp             TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSBCCTTT-S
T ss_pred             CCccEEECcCCcCceEC---HHHcCCCCCCCEEECCCC-ccCCcChhh-----ccCcccCCEEECCCC-cCCccChhh-h
Confidence            34566666665433211   111356777888888774 443211111     123477777777774 444321111 2


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh-
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS-  215 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~-  215 (276)
                      ..+++|++|+++++ .++.-.- .....+++|+.|++++|..++.-.... ...+++|+.|++++| .+++..  .+.. 
T Consensus       144 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~--~~~~l  217 (452)
T 3zyi_A          144 EYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDMP--NLTPL  217 (452)
T ss_dssp             SSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSCC--CCTTC
T ss_pred             cccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-cccccc--ccccc
Confidence            23667777777765 3331111 112245666666666654443211111 123556666666665 333210  0000 


Q ss_pred             ----------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841          216 ----------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       216 ----------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                                +.........+.+++.|+.++++++.+.... . ..+  ..+++|+.|++.++
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~--~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-R-NAF--DGLASLVELNLAHN  276 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-T-TTT--TTCTTCCEEECCSS
T ss_pred             ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-H-HHh--cCCCCCCEEECCCC
Confidence                      0000000123556677777777666654321 1 112  56788888888776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.63  E-value=1.1e-08  Score=92.38  Aligned_cols=161  Identities=15%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH-HHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~~l~~~~l~  159 (276)
                      ..+++|++|+++++ .+++.....     ...+++|+.|+++++ .++.. .+......+++|++|+++++ .++...-.
T Consensus       321 ~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~  392 (520)
T 2z7x_B          321 SKISPFLHLDFSNN-LLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK  392 (520)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG
T ss_pred             hhCCcccEEEeECC-ccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCccccc
Confidence            46778888888874 444321111     134578888888884 66642 22233445788888888876 34321111


Q ss_pred             HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841          160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN  238 (276)
Q Consensus       160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~-~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~  238 (276)
                      .....+++|++|++++| .+++...    ... ++|+.|++++| .++.  +..            ...+++.|+.++++
T Consensus       393 ~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~--ip~------------~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKS--IPK------------QVVKLEALQELNVA  452 (520)
T ss_dssp             CSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCC--CCG------------GGGGCTTCCEEECC
T ss_pred             chhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-cccc--cch------------hhhcCCCCCEEECC
Confidence            11235678888888886 4543222    222 57888888887 5541  110            23378889999998


Q ss_pred             ccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          239 SSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ++.+... +.. .+  ..+++|+.|++.+++-.+|
T Consensus       453 ~N~l~~l-~~~-~~--~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          453 SNQLKSV-PDG-IF--DRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             SSCCCCC-CTT-TT--TTCTTCCEEECCSSCBCCC
T ss_pred             CCcCCcc-CHH-Hh--ccCCcccEEECcCCCCccc
Confidence            8887643 221 23  5788999999988775543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.63  E-value=6.5e-10  Score=93.59  Aligned_cols=136  Identities=13%  Similarity=0.093  Sum_probs=72.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|++|+++++ .++..........+++|+.|+++++ .++..... ....+++|++|+++++ .+++..+......++
T Consensus       100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~  175 (306)
T 2z66_A          100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPDIFTELR  175 (306)
T ss_dssp             CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred             CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence            456666666653 3332211112233566666666654 22211111 1224566777777665 333211112223466


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      +|++|++++| .+++..             ...+.+++.|+.++++++.+.+....  .+  ..+++|+.|++.++.-
T Consensus       176 ~L~~L~Ls~n-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~~~~~~--~~--~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          176 NLTFLDLSQC-QLEQLS-------------PTAFNSLSSLQVLNMSHNNFFSLDTF--PY--KCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             TCCEEECTTS-CCCEEC-------------TTTTTTCTTCCEEECTTSCCSBCCSG--GG--TTCTTCCEEECTTSCC
T ss_pred             CCCEEECCCC-CcCCcC-------------HHHhcCCCCCCEEECCCCccCccChh--hc--cCcccCCEeECCCCCC
Confidence            7777777775 444311             11345678888999988876554221  12  5788999999988753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.62  E-value=1.5e-09  Score=96.18  Aligned_cols=191  Identities=16%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.++++++.......   -.+..+++|++|+++++ .++......     ...+++|++|+++++ .++...-.. ..
T Consensus        65 ~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n-~i~~i~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~~  133 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRN-HIRTIEIGA-----FNGLANLNTLELFDN-RLTTIPNGA-FV  133 (440)
T ss_dssp             TCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSS-CCCEECGGG-----GTTCSSCCEEECCSS-CCSSCCTTT-SC
T ss_pred             CCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCC-cCCccChhh-----ccCCccCCEEECCCC-cCCeeCHhH-hh
Confidence            44556665544322110   11356677777777764 333211111     123466777777763 444211111 12


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh--
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS--  215 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~--  215 (276)
                      .+++|++|+++++ .++.-.-. ....+++|+.|++++|..++.-... ....+++|+.|++++| .+++..  .+..  
T Consensus       134 ~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~~~l~  207 (440)
T 3zyj_A          134 YLSKLKELWLRNN-PIESIPSY-AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIP--NLTPLI  207 (440)
T ss_dssp             SCSSCCEEECCSC-CCCEECTT-TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCC--CCTTCS
T ss_pred             ccccCceeeCCCC-cccccCHH-HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcccc--ccCCCc
Confidence            3566666666654 23211101 1124556666666554433311110 1123455555555554 333210  0000  


Q ss_pred             ---------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          216 ---------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       216 ---------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                               +....+....+.++++|+.++++.+.+... .. ..+  ..+++|+.|++.++.
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~--~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ER-NAF--DNLQSLVEINLAHNN  266 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CT-TSS--TTCTTCCEEECTTSC
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-Ch-hhh--cCCCCCCEEECCCCC
Confidence                     000000011345566777777766665433 11 112  567888888887763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.62  E-value=3.8e-08  Score=82.37  Aligned_cols=150  Identities=19%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      ..+.++.++++++...+...     +..+++|+.|+++++ .+++.  ..     ...+++|++|+++++ .+++.  ..
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~i~~~--~~  129 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDEN-KVKDL--SS-----LKDLKKLKSLSLEHN-GISDI--NG  129 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCG--GG-----GTTCTTCCEEECTTS-CCCCC--GG
T ss_pred             cCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCCC-cCCCC--hh-----hccCCCCCEEECCCC-cCCCC--hh
Confidence            35678889998876554322     468999999999985 45441  11     234699999999995 66653  22


Q ss_pred             HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHH
Q 023841          135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIW  214 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~  214 (276)
                       ...+++|+.|+++++ .+++-  .. ...+++|++|++++| .+++...   ...+++|+.|++++| .+++.  .   
T Consensus       130 -l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l--~---  194 (291)
T 1h6t_A          130 -LVHLPQLESLYLGNN-KITDI--TV-LSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--R---  194 (291)
T ss_dssp             -GGGCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--G---
T ss_pred             -hcCCCCCCEEEccCC-cCCcc--hh-hccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCC--h---
Confidence             345899999999987 55542  22 347899999999997 5554322   456899999999997 67652  0   


Q ss_pred             hcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          215 SNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       215 ~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                                .+..+++|+.++++.+.+.+.
T Consensus       195 ----------~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          195 ----------ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ----------GGTTCTTCSEEEEEEEEEECC
T ss_pred             ----------hhccCCCCCEEECcCCcccCC
Confidence                      246678899999987776544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.61  E-value=3.7e-09  Score=80.96  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ..++.++.++++++....... ... +..+++|+.|+++++ .++..       .....+++|+.|+++++ .++.. +.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i-~~~-~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~-~~   88 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKI-EGL-TAEFVNLEFLSLINV-GLISV-------SNLPKLPKLKKLELSEN-RIFGG-LD   88 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBC-SSC-CGGGGGCCEEEEESS-CCCCC-------SSCCCCSSCCEEEEESC-CCCSC-CC
T ss_pred             CCcccCCEEECCCCCCChhhH-HHH-HHhCCCCCEEeCcCC-CCCCh-------hhhccCCCCCEEECcCC-cCchH-HH
Confidence            345667777777765431111 111 245677777777774 34432       11234577777777774 44442 22


Q ss_pred             HHHhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCccEEecCCC
Q 023841          134 IISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY  202 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd~~~--~~l~~~~~~L~~L~l~~c  202 (276)
                      .+...+++|+.|+++++ .+++- .+..+ ..+++|++|++++| .+++...  ......+|+|+.|++++|
T Consensus        89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l-~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGN-KLKDISTLEPL-KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHHHHCTTCCEEECBSS-SCCSSGGGGGG-SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HHHhhCCCCCEEeccCC-ccCcchhHHHH-hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            33445777777777776 45442 12222 35677777777776 3432211  123445777777777776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.60  E-value=8.2e-09  Score=91.73  Aligned_cols=196  Identities=13%  Similarity=0.072  Sum_probs=97.8

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      ..+.++.++++++.......   -.+..+++|++|+++++ .++..     .......+++|++|+++++ .++...-. 
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~-  165 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDN-WLTVI-----PSGAFEYLSKLRELWLRNN-PIESIPSY-  165 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSS-CCSBC-----CTTTSSSCTTCCEEECCSC-CCCEECTT-
T ss_pred             CCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCC-cCCcc-----ChhhhcccCCCCEEECCCC-CcceeCHh-
Confidence            45567778887765432111   11346777888888774 33311     1111123567777777773 44432111 


Q ss_pred             HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHH---HH
Q 023841          135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLG---LF  211 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~---l~  211 (276)
                      ....+++|+.|++++|..++.-.... ..++++|+.|++++| .+++-  .. ...+++|+.|+++++ .++...   +.
T Consensus       166 ~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~  239 (452)
T 3zyi_A          166 AFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDM--PN-LTPLVGLEELEMSGN-HFPEIRPGSFH  239 (452)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSC--CC-CTTCTTCCEEECTTS-CCSEECGGGGT
T ss_pred             HHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-ccccc--cc-ccccccccEEECcCC-cCcccCccccc
Confidence            12235666666666543332211111 124556666666654 33211  01 123455555555554 333211   11


Q ss_pred             HHHh--------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          212 YIWS--------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       212 ~l~~--------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      .+..        ..........+.++++|+.++++.+.+... .. ..+  ..+++|+.|++.+++-.
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PH-DLF--TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CT-TSS--TTCTTCCEEECCSSCEE
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-Ch-HHh--ccccCCCEEEccCCCcC
Confidence            1000        000000112456788999999988887644 21 122  57899999999987643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.59  E-value=1.1e-09  Score=93.46  Aligned_cols=43  Identities=7%  Similarity=0.082  Sum_probs=25.7

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                      +.+++.|+.++++++........  .+  ..+++|+.|++.+|...+
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p~--~~--~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLPL--DI--HRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCCT--TG--GGCTTCCEEECTTCTTCC
T ss_pred             hcCCCCCCEEECCCCCchhhcch--hh--hcCCCCCEEeCCCCCchh
Confidence            44566777777766554433211  12  567778888877776554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.58  E-value=6.7e-09  Score=89.22  Aligned_cols=192  Identities=11%  Similarity=0.003  Sum_probs=104.5

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHH-HccCCCCCccEEecCCCCCCCHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKT-KCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~-~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ..+.++.++++++.......   -.+..+++|++|+++++ .++.     +.. .....+++|++|+++++..++.....
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  168 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGN-PYKT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRK  168 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECTTC-CCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             CCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECCCC-CCcc-----cCchhhhccCCCCcEEECCCCccccccCHH
Confidence            34667888887765432111   11246778888888874 3331     111 11133577888887775333332111


Q ss_pred             HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC----------
Q 023841          134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV----------  203 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~----------  203 (276)
                      .+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .++.-.- .....+++|+.|+++++.          
T Consensus       169 ~~-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          169 DF-AGLTFLEELEIDAS-DLQSYEPKSL-KSIQNVSHLILHMK-QHILLLE-IFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             TT-TTCCEEEEEEEEET-TCCEECTTTT-TTCSEEEEEEEECS-CSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             Hc-cCCCCCCEEECCCC-CcCccCHHHH-hccccCCeecCCCC-ccccchh-hhhhhcccccEEECCCCccccccccccc
Confidence            11 23666777777665 2332111112 24566666666665 3332221 122235666666666651          


Q ss_pred             ----------------CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841          204 ----------------NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       204 ----------------~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                                      .+++.++..+         .-.+..++.|+.++++++.+... .. .++  ..+++|+.|++.+
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l---------~~~l~~l~~L~~L~Ls~N~l~~i-~~-~~~--~~l~~L~~L~L~~  310 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQV---------MKLLNQISGLLELEFSRNQLKSV-PD-GIF--DRLTSLQKIWLHT  310 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHH---------HHHHHTCTTCCEEECCSSCCCCC-CT-TTT--TTCTTCCEEECCS
T ss_pred             cccccchhhccccccccccCcchhhh---------HHHHhcccCCCEEECCCCCCCcc-CH-HHH--hcCCCCCEEEeeC
Confidence                            2333333332         12467889999999998887643 21 122  5789999999999


Q ss_pred             ceeccc
Q 023841          268 TIKTGQ  273 (276)
Q Consensus       268 ~~~~~~  273 (276)
                      ++-.+|
T Consensus       311 N~~~~~  316 (353)
T 2z80_A          311 NPWDCS  316 (353)
T ss_dssp             SCBCCC
T ss_pred             CCccCc
Confidence            876554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.58  E-value=2.7e-09  Score=98.16  Aligned_cols=40  Identities=3%  Similarity=-0.056  Sum_probs=21.8

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +.+++.|+.++++++.+.....  ..+  ..+++|++|++.++.
T Consensus       472 ~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          472 LQTLGRLEILVLSFCDLSSIDQ--HAF--TSLKMMNHVDLSHNR  511 (606)
T ss_dssp             GGGCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECCSSC
T ss_pred             hccCCCccEEECCCCccCccCh--hhh--ccccCCCEEECCCCc
Confidence            4455666666666655432210  112  456777777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.57  E-value=2.7e-09  Score=98.15  Aligned_cols=136  Identities=16%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|+.|++++| .++...... ...+++|++|+++++ .+++..+......+++|+.|++++| .++...... ...++
T Consensus       423 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~  497 (606)
T 3vq2_A          423 LEKLLYLDISYT-NTKIDFDGI-FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGV-FDTLH  497 (606)
T ss_dssp             CTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCT
T ss_pred             cccCCEEECcCC-CCCccchhh-hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhh-hcccc
Confidence            355556666553 332211111 123556666666655 3332211112235566666666665 333211111 12456


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCC-CCceeeeecceec
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYK-HGKEKHIIETIKT  271 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~L~~l~~~~~~~~  271 (276)
                      +|++|++++| .+++..             ...+.+++.|+.++++++.+... +.  .+  ..++ +|+.+++.+++-.
T Consensus       498 ~L~~L~Ls~N-~l~~~~-------------~~~~~~l~~L~~L~l~~N~l~~~-p~--~~--~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          498 RLQLLNMSHN-NLLFLD-------------SSHYNQLYSLSTLDCSFNRIETS-KG--IL--QHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             TCCEEECCSS-CCSCEE-------------GGGTTTCTTCCEEECTTSCCCCE-ES--CG--GGSCTTCCEEECCSCCCC
T ss_pred             cCCEEECCCC-cCCCcC-------------HHHccCCCcCCEEECCCCcCccc-CH--hH--hhhcccCcEEEccCCCcc
Confidence            6777777665 443311             11455677888888888876532 21  12  4565 5888888887644


Q ss_pred             c
Q 023841          272 G  272 (276)
Q Consensus       272 ~  272 (276)
                      .
T Consensus       559 c  559 (606)
T 3vq2_A          559 C  559 (606)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.56  E-value=2.8e-09  Score=96.81  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.++++++.......   -.+..+++|++|+++++ .++...-..+     ..+++|++|+++++ .++...-..+ 
T Consensus        26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-   94 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSS-RINTIEGDAF-----YSLGSLEHLDLSDN-HLSSLSSSWF-   94 (549)
T ss_dssp             TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEECTTS-CCCSCCHHHH-
T ss_pred             CCccEEECcCCccCccCh---hhhhcCCcccEEECCCC-CcCccChhhc-----cccccCCEEECCCC-ccCccCHHHh-
Confidence            356666766654332110   11246677777777764 3332111111     23467777777774 4444333333 


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh-
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS-  215 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~-  215 (276)
                      ..+++|++|+++++ .++.-.......++++|++|++++|..+++-.... ...+++|+.|+++++ .++...-..+.. 
T Consensus        95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~l~~l  171 (549)
T 2z81_A           95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKAL-SLRNYQSQSLKSI  171 (549)
T ss_dssp             TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred             ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCC-cccccChhhhhcc
Confidence            33677777777765 33321111112356677777776654333211111 123566666666665 343211111100 


Q ss_pred             ----------cCchhhHHHHHcCCCccceecccccCCCC
Q 023841          216 ----------NNILLMSEFIYHGIRFFQAVQINSSNGGD  244 (276)
Q Consensus       216 ----------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~  244 (276)
                                .............++.|+.++++.+.+..
T Consensus       172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence                      00011112234567889999998877655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.55  E-value=1.3e-08  Score=90.20  Aligned_cols=167  Identities=14%  Similarity=0.179  Sum_probs=96.5

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccC----------------------------------CCCCccEEecCCCCCC
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLG----------------------------------SLQDLESLNLNGCQKI  127 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~----------------------------------~~~~L~~L~l~~c~~l  127 (276)
                      .+++|++|+++++ .++......+......                                  ..++|+.|+++++ .+
T Consensus       210 ~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l  287 (455)
T 3v47_A          210 KNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KI  287 (455)
T ss_dssp             TTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CC
T ss_pred             ccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cc
Confidence            3467888888884 6666666665553210                                  1145666666653 44


Q ss_pred             CHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841          128 SDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       128 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~  207 (276)
                      +...-.. ...+++|++|+++++ .++......+ ..+++|++|++++| .+++..... ...+++|+.|++++| .++.
T Consensus       288 ~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~  361 (455)
T 3v47_A          288 FALLKSV-FSHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYN-HIRA  361 (455)
T ss_dssp             CEECTTT-TTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSS-CCCE
T ss_pred             cccchhh-cccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCC-cccc
Confidence            3321111 234677777777765 3443211122 25677788888776 444221111 234677888888776 4543


Q ss_pred             HHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          208 LGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       208 ~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ..             ...+.++++|+.++++++.+... ... .+  ..+++|+.|++.+++-.++
T Consensus       362 ~~-------------~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~--~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          362 LG-------------DQSFLGLPNLKELALDTNQLKSV-PDG-IF--DRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             EC-------------TTTTTTCTTCCEEECCSSCCSCC-CTT-TT--TTCTTCCEEECCSSCBCCC
T ss_pred             cC-------------hhhccccccccEEECCCCccccC-CHh-Hh--ccCCcccEEEccCCCcccC
Confidence            21             11356678899999988877654 211 22  5788999999988765543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.55  E-value=7.9e-08  Score=58.65  Aligned_cols=48  Identities=21%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             cCCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEe
Q 023841           14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID   63 (276)
Q Consensus        14 ~~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~   63 (276)
                      ...|.++| +|++.+||+||+..++.++++||+.|+. ++.++..|+.++
T Consensus         6 ~~~~~~LP-~eil~~I~~~L~~~dl~~~~~Vck~w~~-~~~~~~lW~~ld   53 (53)
T 1fs1_A            6 GVSWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYR-LASDESLWQTLD   53 (53)
T ss_dssp             ---CCSSC-HHHHHHHHTTSCGGGHHHHHTTCHHHHH-HHTCGGGC----
T ss_pred             CCCHHHCC-HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCChHHHHhcC
Confidence            45678877 7999999999999999999999999765 566888898764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.55  E-value=3.8e-09  Score=87.48  Aligned_cols=173  Identities=11%  Similarity=0.077  Sum_probs=110.6

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ...+.++.++++++......     .+..+++|++|+++++ .++...     ......+++|++|+++++ .++...- 
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-  126 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDIS-----ALKELTNLTYLILTGN-QLQSLP-----NGVFDKLTNLKELVLVEN-QLQSLPD-  126 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCCT-
T ss_pred             ccCCCCcEEECCCCCCCCch-----hhcCCCCCCEEECCCC-ccCccC-----hhHhcCCcCCCEEECCCC-cCCccCH-
Confidence            34567888999987654422     2467899999999985 444211     111134689999999995 5553221 


Q ss_pred             HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841          134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l  213 (276)
                      .....+++|+.|+++++ .++.-.- .....+++|+.|++++| .+++... .....+++|+.|++++| .++...    
T Consensus       127 ~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~----  197 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQN-QLKSVP----  197 (272)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC----
T ss_pred             HHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCC-cCCccC----
Confidence            11235889999999987 5542211 12247889999999997 5552211 12245899999999997 555311    


Q ss_pred             HhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841          214 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       214 ~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                               ...+..++.|+.+++..+.+.           ..||+|+.+.+..+
T Consensus       198 ---------~~~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          198 ---------DGVFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWIN  232 (272)
T ss_dssp             ---------TTTTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHH
T ss_pred             ---------HHHHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHH
Confidence                     113456788888888777532           34677777665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.55  E-value=4.8e-10  Score=102.29  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      .+++|+.|++++| .+++..+......+++|+.|++++| .+++..             ...+..++.|+.++++++.+.
T Consensus       443 ~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-------------PTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-------------TTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC-------------hhhhhcccCCCEEeCCCCcCC
Confidence            4455555555554 2222111111223555666666655 333211             113456778888888777765


Q ss_pred             CCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          244 DHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ....  ..+  ..+++|+.+++.+++-.++
T Consensus       508 ~~~~--~~~--~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          508 SVPD--GIF--DRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCCT--TTT--TTCTTCCEEECCSSCBCCC
T ss_pred             CCCH--HHh--hcccCCcEEEecCCcccCC
Confidence            4411  112  5678888888888765543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.54  E-value=7.1e-09  Score=89.07  Aligned_cols=174  Identities=13%  Similarity=0.112  Sum_probs=74.5

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.++++++......   .-.+..+++|++|+++++ .++...-..     ...+++|++|+++++ .++...-..+ .
T Consensus        53 ~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~-~  121 (353)
T 2z80_A           53 AVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSN-GINTIEEDS-----FSSLGSLEHLDLSYN-YLSNLSSSWF-K  121 (353)
T ss_dssp             TCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSSCCHHHH-T
T ss_pred             cCcEEECCCCcCcccC---HHHhccCCCCCEEECCCC-ccCccCHhh-----cCCCCCCCEEECCCC-cCCcCCHhHh-C
Confidence            5566666665433211   011245666666666653 333211111     122466666666663 4443222112 3


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh--
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS--  215 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~--  215 (276)
                      .+++|++|+++++ .++.-........+++|++|++++|..++.-.... ...+++|++|++++| .++...-..+..  
T Consensus       122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~  198 (353)
T 2z80_A          122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDAS-DLQSYEPKSLKSIQ  198 (353)
T ss_dssp             TCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred             CCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCC-CcCccCHHHHhccc
Confidence            3566666666654 23210000012245566666666543232111111 113455555555554 232211000000  


Q ss_pred             ---------cCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          216 ---------NNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       216 ---------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                               .............++.|+.++++.+.+...
T Consensus       199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  237 (353)
T 2z80_A          199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF  237 (353)
T ss_dssp             EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred             cCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence                     000011122344577888888877776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.53  E-value=4.8e-09  Score=96.51  Aligned_cols=42  Identities=5%  Similarity=-0.021  Sum_probs=24.1

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                      +..++.| .++++++.+.... . ..+  ..+++|+.+++.+++-.+
T Consensus       520 l~~l~~L-~L~L~~N~l~~~~-~-~~~--~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          520 LSHLKGI-YLNLASNHISIIL-P-SLL--PILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             GTTCCSC-EEECCSSCCCCCC-G-GGH--HHHHTSSEEECTTCCEEC
T ss_pred             hCccccc-EEECcCCcccccC-H-hhc--ccCCCCCEEeCCCCCccc
Confidence            3445556 6666666654331 1 112  456788888888776544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.52  E-value=1.3e-07  Score=85.78  Aligned_cols=160  Identities=15%  Similarity=0.085  Sum_probs=79.9

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH-HHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      .+++|+.|+++++ .+++......  .+...+++|+.|+++++ .++.... ......+++|++|++++| .++.  +..
T Consensus       332 ~l~~L~~L~Ls~N-~l~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~  404 (549)
T 2z81_A          332 HLKSLEFLDLSEN-LMVEEYLKNS--ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPD  404 (549)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHH--TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCS
T ss_pred             cCccccEEEccCC-ccccccccch--hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CCh
Confidence            4566666666663 4444322211  11223466666666663 4544321 123344666666666655 3331  111


Q ss_pred             HHHhCCCCcEEecCCCC--------------------CCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchh
Q 023841          161 LVKNCKHIIDLNLSGCK--------------------NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  220 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~--------------------~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~  220 (276)
                      ....+++|++|++++|.                    .+++     +...+++|+.|++++| .++.  +.         
T Consensus       405 ~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-----~~~~l~~L~~L~Ls~N-~l~~--ip---------  467 (549)
T 2z81_A          405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRN-KLKT--LP---------  467 (549)
T ss_dssp             CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSS--CC---------
T ss_pred             hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh-----hcccCChhcEEECCCC-ccCc--CC---------
Confidence            11233455555555542                    2221     0123556666666665 4431  11         


Q ss_pred             hHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          221 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       221 l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                          ....++.|+.++++++.+.....  ..+  ..+++|+.|++.+++-.++
T Consensus       468 ----~~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          468 ----DASLFPVLLVMKISRNQLKSVPD--GIF--DRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             ----CGGGCTTCCEEECCSSCCCCCCT--TGG--GGCTTCCEEECCSSCBCCC
T ss_pred             ----CcccCccCCEEecCCCccCCcCH--HHH--hcCcccCEEEecCCCccCC
Confidence                01245678888887777654311  112  5678888888888775543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.52  E-value=4.9e-08  Score=89.84  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=106.2

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ...+.++.|+++.+.......     +..+++|+.|+++++ .+++.  .     ....+++|+.|+++++ .+.+.  .
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N-~l~~l--~-----~l~~l~~L~~L~Ls~N-~l~~l--~  125 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDEN-KIKDL--S-----SLKDLKKLKSLSLEHN-GISDI--N  125 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSS-CCCCC--T-----TSTTCTTCCEEECTTS-CCCCC--G
T ss_pred             ccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCC-CCCCC--h-----hhccCCCCCEEEecCC-CCCCC--c
Confidence            345678899998876544322     468999999999986 44431  1     1245699999999995 66652  2


Q ss_pred             HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841          134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l  213 (276)
                      . ...+++|+.|+|++| .+++-  .. ...+++|+.|++++| .+++...   ...+++|+.|+|++| .+++.  .  
T Consensus       126 ~-l~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~--  191 (605)
T 1m9s_A          126 G-LVHLPQLESLYLGNN-KITDI--TV-LSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--R--  191 (605)
T ss_dssp             G-GGGCTTCSEEECCSS-CCCCC--GG-GGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--G--
T ss_pred             c-ccCCCccCEEECCCC-ccCCc--hh-hcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--h--
Confidence            2 345899999999987 56543  23 347899999999997 5553222   456899999999998 66652  1  


Q ss_pred             HhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          214 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       214 ~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                                 .+..++.|+.|+++.+.+.+.
T Consensus       192 -----------~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          192 -----------ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -----------GGTTCTTCSEEECCSEEEECC
T ss_pred             -----------HHccCCCCCEEEccCCcCcCC
Confidence                       245678888888877665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.51  E-value=2.6e-09  Score=98.24  Aligned_cols=40  Identities=8%  Similarity=-0.114  Sum_probs=25.8

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +.+++.|+.++++++.+.+. . ...+  ..+++|+.|++.++.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~--~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFL-D-SSHY--NQLYSLSTLDCSFNR  532 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCE-E-GGGT--TTCTTCCEEECTTSC
T ss_pred             hcccccCCEEECCCCcCCCc-C-HHHc--cCCCcCCEEECCCCc
Confidence            45677788888877776543 1 1112  567788888887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.50  E-value=5.2e-08  Score=80.30  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=91.2

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.++++++......     .+..+++|+.|+++++ .+++..-  +     ..+++|+.|+++++ .++..  ..+.
T Consensus        41 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N-~i~~~~~--l-----~~l~~L~~L~L~~N-~l~~l--~~~~  104 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHN-QISDLSP--L-----KDLTKLEELSVNRN-RLKNL--NGIP  104 (263)
T ss_dssp             TTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSS-CCCCCGG--G-----TTCSSCCEEECCSS-CCSCC--TTCC
T ss_pred             CcCcEEECcCCCcccch-----HHhhCCCCCEEECCCC-ccCCChh--h-----ccCCCCCEEECCCC-ccCCc--Cccc
Confidence            45677787776544322     1356788888888874 4443211  1     23588888888884 55541  1111


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                      .  ++|+.|+++++ .+++-  .. ...+++|+.|+++++ .+++-.  . ...+++|+.|+++++ .+++.  .     
T Consensus       105 ~--~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~L~L~~N-~i~~~--~-----  166 (263)
T 1xeu_A          105 S--ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--M-LGFLSKLEVLDLHGN-EITNT--G-----  166 (263)
T ss_dssp             C--SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--G-GGGCTTCCEEECTTS-CCCBC--T-----
T ss_pred             c--CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--H-HccCCCCCEEECCCC-cCcch--H-----
Confidence            2  77888888876 45442  22 336788888888886 455421  2 335788888888886 56553  0     


Q ss_pred             CchhhHHHHHcCCCccceecccccCCCCC
Q 023841          217 NILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                              .+..++.|+.+++..+.+...
T Consensus       167 --------~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 --------GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --------TSTTCCCCCEEEEEEEEEECC
T ss_pred             --------HhccCCCCCEEeCCCCcccCC
Confidence                    345677788888877765544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.49  E-value=1e-08  Score=86.89  Aligned_cols=219  Identities=9%  Similarity=0.038  Sum_probs=107.1

Q ss_pred             CCCCCCcHHHHHHHhcCC---CHhhhHHH--hccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEe
Q 023841           16 TWSKETVPKVIRIMSTRL---SQRDIISL--LLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREIN   90 (276)
Q Consensus        16 ~~~~~~~p~il~~if~~L---~~~~l~~~--~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~   90 (276)
                      +.+...+++++..+|..+   ...++...  ..+-..    .....+.++.++++++.......     +..+++|++|+
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~   86 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLD   86 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEE
Confidence            344455677777777644   33333322  222222    23455678888888776543221     35667777777


Q ss_pred             ccCCCCCcHHHHH-----------HHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841           91 LEFAQDIEDRHLE-----------LLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (276)
Q Consensus        91 l~~~~~l~~~~~~-----------~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~  159 (276)
                      ++++ .++.....           .+.......+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++.....
T Consensus        87 Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~  162 (317)
T 3o53_A           87 LNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFA  162 (317)
T ss_dssp             CCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGG
T ss_pred             CcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-CCCcccHH
Confidence            7764 22210000           000000112344555555552 3333111111 22455666666654 34433333


Q ss_pred             HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841          160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  239 (276)
Q Consensus       160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~  239 (276)
                      .+...+++|++|++++| .+++.  .... .+++|+.|+++++ .++...              ..+..++.|+.+++++
T Consensus       163 ~~~~~l~~L~~L~L~~N-~l~~~--~~~~-~l~~L~~L~Ls~N-~l~~l~--------------~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSN-KLAFMG--------------PEFQSAAGVTWISLRN  223 (317)
T ss_dssp             GGGGGTTTCCEEECTTS-CCCEE--ECCC-CCTTCCEEECCSS-CCCEEC--------------GGGGGGTTCSEEECTT
T ss_pred             HHhhccCcCCEEECCCC-cCccc--cccc-ccccCCEEECCCC-cCCcch--------------hhhcccCcccEEECcC
Confidence            33334566666666665 33311  0000 2566666666665 443210              0245667888888888


Q ss_pred             cCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          240 SNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      +.+...   ...+  ..+++|+.|++.+++-.
T Consensus       224 N~l~~l---~~~~--~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          224 NKLVLI---EKAL--RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SCCCEE---CTTC--CCCTTCCEEECTTCCCB
T ss_pred             Ccccch---hhHh--hcCCCCCEEEccCCCcc
Confidence            776532   1122  56788888888876543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.49  E-value=1.7e-09  Score=92.11  Aligned_cols=180  Identities=15%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ...+..+++++.....-.  ..  +..+++|++|+++++ .++. .-..+     ..+++|++|+++++ .++.  +-.-
T Consensus        80 ~~~l~~L~L~~n~l~~lp--~~--l~~l~~L~~L~L~~n-~l~~-lp~~~-----~~l~~L~~L~Ls~n-~l~~--lp~~  145 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFP--DQ--AFRLSHLQHMTIDAA-GLME-LPDTM-----QQFAGLETLTLARN-PLRA--LPAS  145 (328)
T ss_dssp             STTCCEEEEESSCCSSCC--SC--GGGGTTCSEEEEESS-CCCC-CCSCG-----GGGTTCSEEEEESC-CCCC--CCGG
T ss_pred             ccceeEEEccCCCchhcC--hh--hhhCCCCCEEECCCC-Cccc-hhHHH-----hccCCCCEEECCCC-cccc--CcHH
Confidence            356777888776543211  11  245889999999985 4431 10111     23489999999985 5552  2222


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHH--------HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHL--------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l--------~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~  207 (276)
                      ...+++|++|++++|...+.- -..+        ..++++|++|++++| .++  .+..-...+++|+.|++++| .++.
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N-~l~~  220 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNS-PLSA  220 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESS-CCCC
T ss_pred             HhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCC-CCCc
Confidence            345889999999986433210 0011        124889999999987 454  12122346899999999997 5552


Q ss_pred             HHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          208 LGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       208 ~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                        +.       .     .+..+++|+.++++++.+....  ...+  ..+++|+.|++.+|...+
T Consensus       221 --l~-------~-----~l~~l~~L~~L~Ls~n~~~~~~--p~~~--~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          221 --LG-------P-----AIHHLPKLEELDLRGCTALRNY--PPIF--GGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             --CC-------G-----GGGGCTTCCEEECTTCTTCCBC--CCCT--TCCCCCCEEECTTCTTCC
T ss_pred             --Cc-------h-----hhccCCCCCEEECcCCcchhhh--HHHh--cCCCCCCEEECCCCCchh
Confidence              11       1     3567889999999887765542  1223  678999999999987655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.48  E-value=2.6e-08  Score=94.33  Aligned_cols=137  Identities=18%  Similarity=0.209  Sum_probs=73.3

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      ..+.++.++++++...+... ..-.+..+++|++|+++++. ++...-    ......+++|++|+++++ .++......
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~  170 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNT-LDFPGK----VSGGLKLNSLEVLDLSAN-SISGANVVG  170 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSE-EECCSS----CCSCCCCTTCSEEECCSS-CCEEETHHH
T ss_pred             cCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCc-cCCcCC----HHHhccCCCCCEEECCCC-ccCCcCChh
Confidence            34567778887765432111 10123577888888888752 221000    000134578888888884 555433222


Q ss_pred             --HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          135 --ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       135 --l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                        ....+++|++|+++++. ++...  .+ ..+++|++|++++|. ++.. +.. ...+++|++|++++| .++
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls~n-~l~  236 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDISGN-KLS  236 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECCSS-CCC
T ss_pred             hhhhccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECcCC-cCC
Confidence              24457778888777662 32110  01 356777777777763 3211 111 234677777777776 454

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.48  E-value=1.3e-08  Score=88.58  Aligned_cols=84  Identities=10%  Similarity=0.003  Sum_probs=39.4

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.++++++.......   -.+..+++|++|+++++ .++.     +.......+++|++|+++++ .++...... 
T Consensus        92 l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~-----l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-  160 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERN-DLSS-----LPRGIFHNTPKLTTLSMSNN-NLERIEDDT-  160 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS-CCCC-----CCTTTTTTCTTCCEEECCSS-CCCBCCTTT-
T ss_pred             CCCcCEEECCCCCCCcCCH---HHhcCCCCCCEEECCCC-ccCc-----CCHHHhcCCCCCcEEECCCC-ccCccChhh-
Confidence            4455556665543322110   11245666677766663 3321     11111123466777777764 443321111 


Q ss_pred             HhhCCCCCeEeccCC
Q 023841          136 SSTCPELKVFSIYWN  150 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~  150 (276)
                      ...+++|++|+++++
T Consensus       161 ~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          161 FQATTSLQNLQLSSN  175 (390)
T ss_dssp             TSSCTTCCEEECCSS
T ss_pred             ccCCCCCCEEECCCC
Confidence            123667777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.46  E-value=1.7e-08  Score=92.84  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=16.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~  150 (276)
                      +++|++|+++++ .++...-..+ ..+++|+.|+++++
T Consensus       146 l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N  181 (597)
T 3oja_B          146 TPKLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSN  181 (597)
T ss_dssp             CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred             CCCCCEEEeeCC-cCCCCChhhh-hcCCcCcEEECcCC
Confidence            455666666653 3332111111 23556666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.45  E-value=6.4e-09  Score=85.05  Aligned_cols=158  Identities=11%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      ++++.|+++++ .++...-..     ...+++|++|+++++ .++...-.. ...+++|++|+++++ .++.-.. ....
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~~  104 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDAT-----FRGLTKLTWLNLDYN-QLQTLSAGV-FDDLTELGTLGLANN-QLASLPL-GVFD  104 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCT-TTTT
T ss_pred             CCCCEEEccCC-CcCccCHhH-----hcCcccCCEEECCCC-cCCccCHhH-hccCCcCCEEECCCC-cccccCh-hHhc
Confidence            57778888774 333211111     123577888888874 554422111 234677888888765 4442111 1123


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      .+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...             ...+.++++|+.++++++.+.
T Consensus       105 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          105 HLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIP-------------AGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-------------TTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccC-------------HHHcCcCcCCCEEECCCCcCC
Confidence            5678888888875 4441111 11234677888888876 554211             013455677778888777665


Q ss_pred             CCcceeEEEeeccCCCCceeeeecceec
Q 023841          244 DHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      ....  ..+  ..+++|+.|++.+++-.
T Consensus       169 ~~~~--~~~--~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          169 SVPH--GAF--DRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCT--TTT--TTCTTCCEEECCSCCBC
T ss_pred             ccCH--HHH--hCCCCCCEEEeeCCcee
Confidence            4311  112  46677888877776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.44  E-value=7.2e-09  Score=85.71  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=111.4

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.+++++.....      +...-.+++++|+++++ .++...     ......+++|++|+++++ .++...- .+..
T Consensus        17 ~~~~l~~~~~~l~~------ip~~~~~~l~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~i~~-~~~~   82 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA------IPSNIPADTKKLDLQSN-KLSSLP-----SKAFHRLTKLRLLYLNDN-KLQTLPA-GIFK   82 (270)
T ss_dssp             TTTEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCSCCC-----TTSSSSCTTCCEEECCSS-CCSCCCT-TTTS
T ss_pred             CCCEEEccCCCCCc------cCCCCCCCCCEEECcCC-CCCeeC-----HHHhcCCCCCCEEECCCC-ccCeeCh-hhhc
Confidence            46677777654332      22123468999999985 444211     111234699999999995 5553211 1224


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  217 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~  217 (276)
                      .+++|++|+++++ .++.-.. .....+++|++|+++++ .++..... ....+++|++|+++++ .++...        
T Consensus        83 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~--------  149 (270)
T 2o6q_A           83 ELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLP--------  149 (270)
T ss_dssp             SCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC--------
T ss_pred             CCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccC--------
Confidence            5899999999976 4443211 12246889999999996 44422211 1245899999999997 555321        


Q ss_pred             chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                           ...+.+++.|+.++++.+.+.....  ..+  ..+++|+.|++.++.
T Consensus       150 -----~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          150 -----KGVFDKLTSLKELRLYNNQLKRVPE--GAF--DKLTELKTLKLDNNQ  192 (270)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred             -----HhHccCCcccceeEecCCcCcEeCh--hHh--ccCCCcCEEECCCCc
Confidence                 1135678899999998887665421  112  578999999998873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.43  E-value=1.5e-08  Score=90.55  Aligned_cols=37  Identities=5%  Similarity=-0.113  Sum_probs=19.3

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~   94 (276)
                      ..+.++.++++++......   .-.+..+++|++|+++++
T Consensus        78 ~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIP---LGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCC---TTSSTTCTTCCEEECTTS
T ss_pred             CCccCCEEECCCCcCCccC---cccccCCCCCCEEECCCC
Confidence            3456777777765432211   011245666666666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.42  E-value=1.5e-08  Score=85.76  Aligned_cols=158  Identities=12%  Similarity=0.071  Sum_probs=105.9

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .++...-..+     ..+++|+.|+++++ .++......+...+++|++|+++++ .++..  ..
T Consensus       117 ~~~~~L~~L~l~~N-~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~  186 (317)
T 3o53_A          117 SRGQGKKNIYLANN-KITMLRDLDE-----GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG  186 (317)
T ss_dssp             CCCSSCEEEECCSS-CCCSGGGBCT-----GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC
T ss_pred             cccCCCCEEECCCC-CCCCccchhh-----hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--cc
Confidence            44678888888874 4443211111     23589999999994 7777655566667899999999987 44432  11


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                      .. .+++|++|++++| .++.-...  ...+++|+.|+++++ .++.  +.            .....++.|+.++++.+
T Consensus       187 ~~-~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~------------~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          187 QV-VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IE------------KALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CC-CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--EC------------TTCCCCTTCCEEECTTC
T ss_pred             cc-ccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hh------------hHhhcCCCCCEEEccCC
Confidence            11 4789999999997 55532111  345899999999997 6663  11            13466789999999988


Q ss_pred             CCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          241 NGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      .+... .....+  ..+++|+.+.+..+.+
T Consensus       248 ~~~~~-~~~~~~--~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          248 GFHCG-TLRDFF--SKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             CCBHH-HHHHHH--HTCHHHHHHHHHHHHH
T ss_pred             CccCc-CHHHHH--hccccceEEECCCchh
Confidence            87622 222333  5678888888775543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.41  E-value=3e-08  Score=91.30  Aligned_cols=38  Identities=5%  Similarity=-0.071  Sum_probs=25.7

Q ss_pred             cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      ..++.|+.++++++.+... .    .  ..+++|+.|++.+++-.
T Consensus       321 ~~l~~L~~L~L~~N~l~~~-~----~--~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          321 PQFDRLENLYLDHNSIVTL-K----L--STHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             HHHTTCSEEECCSSCCCCC-C----C--CTTCCCSEEECCSSCEE
T ss_pred             ccCCCCCEEECCCCCCCCc-C----h--hhcCCCCEEEeeCCCCC
Confidence            4456777777777776544 2    2  57788888888876643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.41  E-value=3.4e-08  Score=88.68  Aligned_cols=107  Identities=8%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  218 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~  218 (276)
                      +++|+.|+++++ .++......+...+++|+.|++++| .+++.  ... ..+++|+.|+++++ .++..          
T Consensus       143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~----------  206 (487)
T 3oja_A          143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFM----------  206 (487)
T ss_dssp             GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEE----------
T ss_pred             CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--ccc-ccCCCCCEEECCCC-CCCCC----------
Confidence            445555555544 3333222233334555555555554 23211  000 02455555555554 34321          


Q ss_pred             hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          219 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       219 ~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                          ...+.+++.|+.++++++.+...   ...+  ..+++|+.|++.+++-
T Consensus       207 ----~~~~~~l~~L~~L~Ls~N~l~~l---p~~l--~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          207 ----GPEFQSAAGVTWISLRNNKLVLI---EKAL--RFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ----CGGGGGGTTCSEEECTTSCCCEE---CTTC--CCCTTCCEEECTTCCB
T ss_pred             ----CHhHcCCCCccEEEecCCcCccc---chhh--ccCCCCCEEEcCCCCC
Confidence                00244567778888877776532   1112  4677888888877653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.40  E-value=3.2e-08  Score=92.25  Aligned_cols=162  Identities=20%  Similarity=0.239  Sum_probs=92.3

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......   .-.+..+++|++|+++++ .++...-..+..     +++|+.|+++++ .++...-..+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~l~~~~~   93 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLP---AANFTRYSQLTSLDVGFN-TISKLEPELCQK-----LPMLKVLNLQHN-ELSQLSDKTF   93 (680)
T ss_dssp             CTTCSEEECCSSCCCCCC---GGGGGGGTTCSEEECCSS-CCCCCCTTHHHH-----CTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCcEEECCCCCCCCcC---HHHHhCCCcCcEEECCCC-ccCccCHHHHhc-----ccCcCEEECCCC-ccCccChhhh
Confidence            356777888876543211   111357888999999874 443322222222     488999999885 5543221122


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                       ..+++|++|+++++ .++.-.-..+ .++++|++|++++| .++......+ ..+++|++|+++++ .++...-..   
T Consensus        94 -~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~---  164 (680)
T 1ziw_A           94 -AFCTNLTELHLMSN-SIQKIKNNPF-VKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN-KIQALKSEE---  164 (680)
T ss_dssp             -TTCTTCSEEECCSS-CCCCCCSCTT-TTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS-CCCCBCHHH---
T ss_pred             -ccCCCCCEEECCCC-ccCccChhHc-cccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC-cccccCHHH---
Confidence             34788999998876 3432111122 36788999999886 3432211111 35788899998886 454322111   


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCC
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGD  244 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~  244 (276)
                              +....++.|+.++++.+.+..
T Consensus       165 --------~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          165 --------LDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             --------HGGGTTCEESEEECTTCCCCC
T ss_pred             --------hhccccccccEEECCCCcccc
Confidence                    122345677777776665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.40  E-value=8.3e-08  Score=79.08  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .+++..  .+     ..+++|+.|+++++ .+++..-   ...+++|+.|+++++ .+++  +..
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l~--~l-----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~  102 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSLA--GM-----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNG  102 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCCT--TG-----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTT
T ss_pred             hhcCcCcEEECcCC-Ccccch--HH-----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCc
Confidence            45788888888885 444321  12     12488999999885 6655332   445888999998876 4443  112


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                      +. . ++|++|++++| .+++-  .. ...+++|+.|+++++ .+++..               .+..++.|+.++++.+
T Consensus       103 ~~-~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---------------~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          103 IP-S-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV---------------MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CC-C-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG---------------GGGGCTTCCEEECTTS
T ss_pred             cc-c-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh---------------HHccCCCCCEEECCCC
Confidence            22 2 78899999886 55542  22 335888999999887 565421               2456788888888888


Q ss_pred             CCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          241 NGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .+.+..    .+  ..+++|+.|++.++.
T Consensus       161 ~i~~~~----~l--~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          161 EITNTG----GL--TRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCCBCT----TS--TTCCCCCEEEEEEEE
T ss_pred             cCcchH----Hh--ccCCCCCEEeCCCCc
Confidence            776551    12  577888888887765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.40  E-value=3.9e-08  Score=89.72  Aligned_cols=161  Identities=12%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH-HHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~~l~~~~l~  159 (276)
                      ..+++|++|+++++ .+++.....     ...+++|+.|+++++ .++.. .+......+++|++|+++++ .++...-.
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  421 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD  421 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred             cCCCCceEEECCCC-ccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence            46778888888874 454321111     134688888888884 66642 22223345788888888876 34321111


Q ss_pred             HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841          160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN  238 (276)
Q Consensus       160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~-~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~  238 (276)
                      .....+++|+.|++++| .+++..    .... ++|+.|+++++ .++.  +.       .     ...+++.|+.++++
T Consensus       422 ~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~--ip-------~-----~~~~l~~L~~L~L~  481 (562)
T 3a79_B          422 RTCAWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMS--IP-------K-----DVTHLQALQELNVA  481 (562)
T ss_dssp             CCCCCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCC--CC-------T-----TTTSSCCCSEEECC
T ss_pred             hhhcCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcc--cC-------h-----hhcCCCCCCEEECC
Confidence            12235678888888886 565422    2233 58899999887 6651  11       0     22378899999998


Q ss_pred             ccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          239 SSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ++.+... ... .+  ..+++|+.+++.+++-.+|
T Consensus       482 ~N~l~~l-~~~-~~--~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          482 SNQLKSV-PDG-VF--DRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SSCCCCC-CTT-ST--TTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCC-CHH-HH--hcCCCCCEEEecCCCcCCC
Confidence            8887643 221 23  6789999999998775543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.39  E-value=1.8e-08  Score=95.42  Aligned_cols=38  Identities=8%  Similarity=-0.081  Sum_probs=19.5

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~   94 (276)
                      ..+.++.++++.+........ . ....+++|++|+++++
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~-~-~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKV-S-GGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSC-C-SCCCCTTCSEEECCSS
T ss_pred             CCCCCCEEECcCCccCCcCCH-H-HhccCCCCCEEECCCC
Confidence            345677777776543211110 0 0135666777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.38  E-value=5.4e-08  Score=82.67  Aligned_cols=37  Identities=5%  Similarity=-0.149  Sum_probs=20.0

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~   94 (276)
                      ..+.++.++++++.......   -.+..+++|++|+++++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCcCCeeCH---HHhcCCCCCCEEECCCC
Confidence            34567777777654332110   11245667777777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.38  E-value=2.7e-09  Score=97.33  Aligned_cols=133  Identities=11%  Similarity=0.038  Sum_probs=66.7

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      ++|++|+++++ .++...-.  ...+++|++|+++++ .++..........+++|++|++++| .++.... .....+++
T Consensus       373 ~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~  446 (570)
T 2z63_A          373 TSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSS  446 (570)
T ss_dssp             SCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTT
T ss_pred             CccCEEECCCC-cccccccc--ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCc
Confidence            55555555553 22221100  223556666666554 2221111111235566666666665 2221111 11224666


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      |+.|++++| .+++..+.            ..+.+++.|+.++++.+.+.+.. . ..+  ..+++|+.|++.+|.
T Consensus       447 L~~L~l~~n-~l~~~~~p------------~~~~~l~~L~~L~l~~n~l~~~~-~-~~~--~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          447 LEVLKMAGN-SFQENFLP------------DIFTELRNLTFLDLSQCQLEQLS-P-TAF--NSLSSLQVLNMASNQ  505 (570)
T ss_dssp             CCEEECTTC-EEGGGEEC------------SCCTTCTTCCEEECTTSCCCEEC-T-TTT--TTCTTCCEEECCSSC
T ss_pred             CcEEECcCC-cCccccch------------hhhhcccCCCEEECCCCccccCC-h-hhh--hcccCCCEEeCCCCc
Confidence            777777766 34321111            13566788888888877765331 1 112  578899999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.38  E-value=7.7e-09  Score=98.96  Aligned_cols=140  Identities=16%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      .++.++.++++++......   .-.+..+++|++|+++++..+..     +....-..+++|+.|+++++ .++...-..
T Consensus        22 lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~-----i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~   92 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLT-----IDKEAFRNLPNLRILDLGSS-KIYFLHPDA   92 (844)
T ss_dssp             SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCE-----ECTTTTSSCTTCCEEECTTC-CCCEECTTS
T ss_pred             CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccc-----cCHHHhcCCCCCCEEECCCC-cCcccCHhH
Confidence            3566788888876543211   11246788999999988633221     10111134688999999985 555432222


Q ss_pred             HHhhCCCCCeEeccCCCCcCHHHHHH-HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841          135 ISSTCPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~~~l~~-l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~  207 (276)
                      + ..+++|++|+|++| .+++..... ....+++|++|++++| .++.........++++|++|+++++ .++.
T Consensus        93 ~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~  162 (844)
T 3j0a_A           93 F-QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFL  162 (844)
T ss_dssp             S-CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCC
T ss_pred             c-cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCe
Confidence            2 34888999999887 454322221 1236789999999986 4443222222346889999999886 4543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.37  E-value=4.9e-08  Score=82.96  Aligned_cols=192  Identities=13%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.++++++.......   -.+..+++|++|+++++ .++...-..     ...+++|++|+++++ .++...    
T Consensus        51 ~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~l~----  116 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKD---GDFKNLKNLHTLILINN-KISKISPGA-----FAPLVKLERLYLSKN-QLKELP----  116 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTTCCEEECCSS-CCSBCC----
T ss_pred             CCCCeEEECCCCcCCEeCh---hhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCCCCEEECCCC-cCCccC----
Confidence            4566778887765432111   12367889999999985 443221111     123588889998884 444211    


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHH-HHHHhcCCCccEEecCCCCCCCHHH-----
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRYVNMILLG-----  209 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~-~~l~~~~~~L~~L~l~~c~~it~~~-----  209 (276)
                      ....++|++|+++++ .++......+ .++++|+.|+++++ .+++.++ ......+++|+.|+++++ .++...     
T Consensus       117 ~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~  192 (330)
T 1xku_A          117 EKMPKTLQELRVHEN-EITKVRKSVF-NGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP  192 (330)
T ss_dssp             SSCCTTCCEEECCSS-CCCBBCHHHH-TTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT
T ss_pred             hhhcccccEEECCCC-cccccCHhHh-cCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccCCccccc
Confidence            012357778877765 3443222222 36777778877775 3432111 112234677777777765 343210     


Q ss_pred             -HHHH--HhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          210 -LFYI--WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       210 -l~~l--~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                       +..+  ............+.++++|+.++++++.+.+... . .+  ..+++|++|++.++.
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~--~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-G-SL--ANTPHLRELHLNNNK  251 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-T-TG--GGSTTCCEEECCSSC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-h-hc--cCCCCCCEEECCCCc
Confidence             0000  0000000001245667888888888777654311 1 12  568889999888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.37  E-value=2.6e-08  Score=89.44  Aligned_cols=172  Identities=12%  Similarity=-0.018  Sum_probs=114.1

Q ss_pred             hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841           53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI  132 (276)
Q Consensus        53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~  132 (276)
                      +...+.++.++++++...+...     +..+++|++|+++++ .+++.          ...++|+.|+++++ .++....
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N-~l~~l----------~~~~~L~~L~L~~N-~l~~~~~  116 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNN-YVQEL----------LVGPSIETLHAANN-NISRVSC  116 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSS-EEEEE----------EECTTCCEEECCSS-CCCCEEE
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCC-cCCCC----------CCCCCcCEEECcCC-cCCCCCc
Confidence            3456688999999876543222     467899999999985 44321          12378999999985 5554322


Q ss_pred             HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHH
Q 023841          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY  212 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~  212 (276)
                          ..+++|+.|+++++ .++...-..+ ..+++|+.|+++++ .+++.....+...+++|+.|++++| .++..    
T Consensus       117 ----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~----  184 (487)
T 3oja_A          117 ----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV----  184 (487)
T ss_dssp             ----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE----
T ss_pred             ----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc----
Confidence                24688999999876 4543221122 35788999999986 6665444445546789999999997 56543    


Q ss_pred             HHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          213 IWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       213 l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                           +      ....++.|+.++++++.++....   .+  ..+++|+.|++.++.
T Consensus       185 -----~------~~~~l~~L~~L~Ls~N~l~~~~~---~~--~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          185 -----K------GQVVFAKLKTLDLSSNKLAFMGP---EF--QSAAGVTWISLRNNK  225 (487)
T ss_dssp             -----E------CCCCCTTCCEEECCSSCCCEECG---GG--GGGTTCSEEECTTSC
T ss_pred             -----c------ccccCCCCCEEECCCCCCCCCCH---hH--cCCCCccEEEecCCc
Confidence                 0      12247788888888887754311   13  578889999888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.34  E-value=3.4e-08  Score=80.73  Aligned_cols=110  Identities=14%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .++...     ......+++|+.|+++++ .++..... ....+++|++|+++++ .++.-. ..
T Consensus        56 ~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~  125 (251)
T 3m19_A           56 RGLTKLTWLNLDYN-QLQTLS-----AGVFDDLTELGTLGLANN-QLASLPLG-VFDHLTQLDKLYLGGN-QLKSLP-SG  125 (251)
T ss_dssp             TTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TT
T ss_pred             cCcccCCEEECCCC-cCCccC-----HhHhccCCcCCEEECCCC-cccccChh-HhcccCCCCEEEcCCC-cCCCcC-hh
Confidence            45666666666663 333211     111123466666666663 44422111 1123566666666654 333111 01


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      ....+++|+.|+++++ .++.-... ....+++|+.|+++++
T Consensus       126 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A          126 VFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred             HhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC
Confidence            1124556666666664 33311110 1123556666666664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=1.2e-07  Score=90.60  Aligned_cols=111  Identities=16%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH----HHHHHHH---hhCCCCCeEeccCCCCcC
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD----KGIEIIS---STCPELKVFSIYWNVRVT  154 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~----~~~~~l~---~~~~~L~~L~L~~~~~l~  154 (276)
                      .+++|+.|++++|.... ..-..+     ..+++|+.|+++++..++.    ..+..+.   ..+++|+.|+++++ .++
T Consensus       489 ~L~~L~~L~Ls~N~l~~-~iP~~l-----~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~  561 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMT-QLPDFL-----YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE  561 (876)
T ss_dssp             GCTTCCEEEEESCTTCC-SCCGGG-----GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC
T ss_pred             cCCCCCEEECcCCCCCc-cChHHH-----hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC
Confidence            67778888877753211 000111     2247777888877422554    2233332   34567777777765 444


Q ss_pred             HHHHHH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          155 DIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       155 ~~~l~~--l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                        .+..  ....+++|+.|+++++ .++  .+. ....+++|+.|+++++ .++
T Consensus       562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~  608 (876)
T 4ecn_A          562 --EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE  608 (876)
T ss_dssp             --BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS
T ss_pred             --ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc
Confidence              2222  2236777777777775 344  222 2234667777777775 444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.33  E-value=2.5e-09  Score=90.53  Aligned_cols=195  Identities=9%  Similarity=0.060  Sum_probs=105.5

Q ss_pred             CCccEEecCCccCcch-hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ..++.+++++....+. ....  .+..+++|++|+++++..++...-..+     ..+++|++|+++++ .++...-..+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n-~l~~~~p~~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAI-----AKLTQLHYLYITHT-NVSGAIPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGG-----GGCTTCSEEEEEEE-CCEEECCGGG
T ss_pred             ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhH-----hcCCCCCEEECcCC-eeCCcCCHHH
Confidence            4677777777654421 1111  235788999999985233332111112     22588999999884 5542211122


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC-CccEEecCCCCCCCHHHHHHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYVNMILLGLFYIW  214 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~-~L~~L~l~~c~~it~~~l~~l~  214 (276)
                       ..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++......+. .++ +|+.|+++++ .++...-..+.
T Consensus       122 -~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~~  195 (313)
T 1ogq_A          122 -SQIKTLVTLDFSYN-ALSGTLPPSI-SSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFA  195 (313)
T ss_dssp             -GGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGG
T ss_pred             -hCCCCCCEEeCCCC-ccCCcCChHH-hcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHHh
Confidence             34788888888876 3332111122 36788888888886 44322112222 344 7888888886 44321111111


Q ss_pred             hc---------Cc-hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          215 SN---------NI-LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       215 ~~---------~~-~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      ..         +. .......+..++.|+.++++.+.+......   +  ..+++|++|++.++.-
T Consensus       196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCC
T ss_pred             CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCcc
Confidence            00         00 000012345677788888877776543221   2  5678888888887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.33  E-value=7.1e-07  Score=79.40  Aligned_cols=177  Identities=11%  Similarity=0.079  Sum_probs=83.6

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.+++++....+..     .+..+++|++|+++++ .++...        ...+++|++|+++++ .++...    .
T Consensus        42 ~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~Ls~n-~l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~----~  102 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSN-NITTLD--------LSQNTNLTYLACDSN-KLTNLD----V  102 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-----TGGGCTTCSEEECCSS-CCSCCC--------CTTCTTCSEEECCSS-CCSCCC----C
T ss_pred             CCCCEEEccCCCcccCh-----hhcccCCCCEEEccCC-cCCeEc--------cccCCCCCEEECcCC-CCceee----c
Confidence            34566666665433221     1245666666666664 333310        123466666666663 444421    2


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                      ..+++|++|+++++ .++.-  .  ...+++|++|+++++ .++.-.    ...+++|+.|++++|..++...+..+..-
T Consensus       103 ~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L  172 (457)
T 3bz5_A          103 TPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQL  172 (457)
T ss_dssp             TTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTC
T ss_pred             CCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccccccCCcC
Confidence            33566666666654 33321  1  224556666666654 333211    12355555555555532222110000000


Q ss_pred             -----CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          217 -----NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       217 -----~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                           ....++.+....++.|+.++++.+.+... .    +  ..+++|+.|++.++.
T Consensus       173 ~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~----l--~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-D----L--NQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred             CEEECCCCccceeccccCCCCCEEECcCCcCCee-c----c--ccCCCCCEEECcCCc
Confidence                 00000001234566677777766665543 1    2  567788888777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.32  E-value=2.1e-08  Score=79.53  Aligned_cols=12  Identities=25%  Similarity=0.387  Sum_probs=6.2

Q ss_pred             CCCccEEecCCC
Q 023841          191 YQELESLNLTRY  202 (276)
Q Consensus       191 ~~~L~~L~l~~c  202 (276)
                      +++|++|+++++
T Consensus       123 l~~L~~L~l~~N  134 (208)
T 2o6s_A          123 LTQLKDLRLYQN  134 (208)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcCCEEECCCC
Confidence            455555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.32  E-value=5.3e-09  Score=88.51  Aligned_cols=43  Identities=7%  Similarity=-0.056  Sum_probs=31.1

Q ss_pred             HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                      ...++.|+.++++.+.+.....  ..+  ..+++|+.|++.++.-.|
T Consensus       240 ~~~l~~L~~L~Ls~N~l~~~~p--~~l--~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          240 VGLSKNLNGLDLRNNRIYGTLP--QGL--TQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCC--GGG--GGCTTCCEEECCSSEEEE
T ss_pred             ccccCCCCEEECcCCcccCcCC--hHH--hcCcCCCEEECcCCcccc
Confidence            4567899999999888753311  123  678999999999886443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.28  E-value=1.1e-06  Score=78.18  Aligned_cols=179  Identities=11%  Similarity=0.035  Sum_probs=103.1

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE  133 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~  133 (276)
                      ...+.++.++++++.....      .+..+++|++|+++++ .++...        ...+++|++|+++++ .++...  
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N-~l~~~~--------~~~l~~L~~L~L~~N-~l~~l~--  122 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSN-KLTNLD--------VTPLTKLTYLNCDTN-KLTKLD--  122 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSS-CCSCCC--------CTTCTTCCEEECCSS-CCSCCC--
T ss_pred             cccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCC-CCceee--------cCCCCcCCEEECCCC-cCCeec--
Confidence            3456778888887654432      2457788888888874 444321        133577888888774 555421  


Q ss_pred             HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841          134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI  213 (276)
Q Consensus       134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l  213 (276)
                        ...+++|++|+++++ .++.-   . ...+++|+.|++++|..++.-.    ...+++|+.|+++++ .++...+..+
T Consensus       123 --~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~l~~l  190 (457)
T 3bz5_A          123 --VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELDVSQN  190 (457)
T ss_dssp             --CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCCCTTC
T ss_pred             --CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceeccccC
Confidence              234677777777765 34331   1 2256667777776664443221    123566666666665 4443211100


Q ss_pred             Hhc-----CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          214 WSN-----NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       214 ~~~-----~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      ..-     ....+..+....++.|+.++++++.+... +    +  ..+++|+.|++.++.
T Consensus       191 ~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p----~--~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D----V--TPLTQLTYFDCSVNP  244 (457)
T ss_dssp             TTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred             CCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C----c--cccCCCCEEEeeCCc
Confidence            000     00000111356678999999999988763 2    3  688999999998774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=6.7e-07  Score=85.47  Aligned_cols=119  Identities=17%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             cccCCCccEEeccCCCCCcHH------------HHH-HHHHHccC--CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCe
Q 023841           80 IPRYRHVREINLEFAQDIEDR------------HLE-LLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV  144 (276)
Q Consensus        80 ~~~~~~L~~L~l~~~~~l~~~------------~~~-~i~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~  144 (276)
                      +..+++|+.|+++++ .++..            ... .+... ..  .+++|+.|++++|. +....-.. ...+++|+.
T Consensus       444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~-l~~~iP~~-l~~L~~L~~  519 (876)
T 4ecn_A          444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCP-NMTQLPDF-LYDLPELQS  519 (876)
T ss_dssp             GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCT-TCCSCCGG-GGGCSSCCE
T ss_pred             HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCC-CCccChHH-HhCCCCCCE
Confidence            467899999999985 55541            000 11111 12  46899999999963 22211122 235899999


Q ss_pred             EeccCCCCcCH-HH---HHHHH---HhCCCCcEEecCCCCCCCHHHHHH--HHhcCCCccEEecCCCCCCC
Q 023841          145 FSIYWNVRVTD-IG---IQHLV---KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       145 L~L~~~~~l~~-~~---l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~--l~~~~~~L~~L~l~~c~~it  206 (276)
                      |+++++..++. ..   +..+.   ..+++|+.|++++| .++  .+..  ....+++|+.|+++++ .++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~  586 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHN-KVR  586 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTS-CCC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCC-Ccc
Confidence            99998843765 22   33222   34569999999997 555  2322  3346899999999997 565

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.26  E-value=8.9e-08  Score=83.28  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .+++.....     ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.-. ..
T Consensus        66 ~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~  135 (390)
T 3o6n_A           66 DSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RG  135 (390)
T ss_dssp             HHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TT
T ss_pred             cccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HH
Confidence            45778888888874 343221111     123578888888874 5544222222 34778888888876 444211 11


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~  207 (276)
                      +...+++|++|+++++ .++...... ...+++|++|+++++ .++.
T Consensus       136 ~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~  179 (390)
T 3o6n_A          136 IFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTH  179 (390)
T ss_dssp             TTTTCTTCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSS-CCSB
T ss_pred             HhcCCCCCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCC-cCCc
Confidence            2236778888888876 343211111 234778888888886 5554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.25  E-value=5.6e-08  Score=81.27  Aligned_cols=177  Identities=18%  Similarity=0.220  Sum_probs=100.9

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++........   -.+..+++|++|+++++ .++....       ...+++|+.|+++++ .++.  +...
T Consensus        30 ~~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~--l~~~   95 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRA-ELTKLQV-------DGTLPVLGTLDLSHN-QLQS--LPLL   95 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTS-CCCEEEC-------CSCCTTCCEEECCSS-CCSS--CCCC
T ss_pred             CCCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCC-ccCcccC-------CCCCCcCCEEECCCC-cCCc--Cchh
Confidence            3456677777665432111   11356788888888874 4432110       134578888888884 5542  1122


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ...+++|++|+++++ .++.-.... ...+++|++|+++++ .++.-.. ..+..+++|+.|+++++ .++...      
T Consensus        96 ~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~------  164 (290)
T 1p9a_G           96 GQTLPALTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP------  164 (290)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC------
T ss_pred             hccCCCCCEEECCCC-cCcccCHHH-HcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccC------
Confidence            345778888888876 443211111 236778888888886 4442111 11235778888888886 554210      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             ...+.+++.|+.++++.+.+... .  ..+  ...++|+.+.+.+.+
T Consensus       165 -------~~~~~~l~~L~~L~L~~N~l~~i-p--~~~--~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          165 -------AGLLNGLENLDTLLLQENSLYTI-P--KGF--FGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCCCC-C--TTT--TTTCCCSEEECCSCC
T ss_pred             -------HHHhcCcCCCCEEECCCCcCCcc-C--hhh--cccccCCeEEeCCCC
Confidence                   11345677888888877776533 1  111  345678888777554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.25  E-value=5.5e-08  Score=81.31  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=111.8

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.+++++.....      +...-.++++.|+++++ .++......+     ..+++|+.|+++++ .++.....  
T Consensus         9 l~~l~~l~~~~~~l~~------ip~~~~~~l~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~--   73 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA------LPPDLPKDTTILHLSEN-LLYTFSLATL-----MPYTRLTQLNLDRA-ELTKLQVD--   73 (290)
T ss_dssp             STTCCEEECTTSCCSS------CCSCCCTTCCEEECTTS-CCSEEEGGGG-----TTCTTCCEEECTTS-CCCEEECC--
T ss_pred             cCCccEEECCCCCCCc------CCCCCCCCCCEEEcCCC-cCCccCHHHh-----hcCCCCCEEECCCC-ccCcccCC--
Confidence            3456677776644322      22223478999999985 4443221112     34699999999994 66653221  


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                       ..+++|+.|+++++ .++.  +......+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...      
T Consensus        74 -~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~------  140 (290)
T 1p9a_G           74 -GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLP------  140 (290)
T ss_dssp             -SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCC------
T ss_pred             -CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccC------
Confidence             46889999999986 4541  2222346889999999996 4542111 11235889999999997 565311      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             ...+.++++|+.++++.+.+... .. ..+  ..+++|+.|++.++.
T Consensus       141 -------~~~~~~l~~L~~L~L~~N~l~~l-~~-~~~--~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          141 -------PGLLTPTPKLEKLSLANNNLTEL-PA-GLL--NGLENLDTLLLQENS  183 (290)
T ss_dssp             -------TTTTTTCTTCCEEECTTSCCSCC-CT-TTT--TTCTTCCEEECCSSC
T ss_pred             -------hhhcccccCCCEEECCCCcCCcc-CH-HHh--cCcCCCCEEECCCCc
Confidence                   11345778999999988887644 11 122  568899999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.24  E-value=5.6e-08  Score=82.72  Aligned_cols=35  Identities=9%  Similarity=-0.005  Sum_probs=21.9

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~   94 (276)
                      +.++.++++++......   .-.+..+++|++|+++++
T Consensus       123 ~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TTCCEEECCSSCCCCCC---SGGGSSCSSCCEEECCSC
T ss_pred             ccCCEEECCCCccCccC---HhHhCCCccCCEEECCCC
Confidence            56778888776543211   111356788888888874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.20  E-value=7.9e-08  Score=79.53  Aligned_cols=137  Identities=13%  Similarity=0.160  Sum_probs=88.6

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      ++|++|+++++ .++......+     ..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++......+ .
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~   97 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSF-----FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAF-S   97 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTT-----TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTT-T
T ss_pred             CCccEEECCCC-cccccCHhHh-----ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhhh-c
Confidence            57999999985 4443221122     33689999999995 6654322222 34889999999987 4443222222 3


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      .+++|++|+++++ .++...... ...+++|++|+++++ .++...+.            ..+.++++|+.++++++.+.
T Consensus        98 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~------------~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           98 GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLP------------EYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCC------------GGGGGCTTCCEEECCSSCCC
T ss_pred             CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCc------------hhhccCCCCCEEECCCCCCC
Confidence            6889999999987 343211111 235899999999997 55542111            14567789999999888765


Q ss_pred             CC
Q 023841          244 DH  245 (276)
Q Consensus       244 ~~  245 (276)
                      ..
T Consensus       163 ~~  164 (276)
T 2z62_A          163 SI  164 (276)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.20  E-value=9.6e-07  Score=79.60  Aligned_cols=161  Identities=14%  Similarity=0.137  Sum_probs=102.8

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcH-HHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-RHLELLKTKCLGSLQDLESLNLNGCQKISDKGI  132 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~  132 (276)
                      ...+.++.++++++...+...   -.+..+++|+.|+++++ .++. ..+....    ..+++|+.|+++++ .++...-
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~----~~l~~L~~L~Ls~N-~l~~~l~  391 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMN-QLKELSKIAEMT----TQMKSLQQLDISQN-SVSYDEK  391 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSS-CCCBHHHHHHHH----TTCTTCCEEECCSS-CCBCCGG
T ss_pred             hhCCcccEEEeECCccChhhh---hhhccCCCCCEEEccCC-ccCccccchHHH----hhCCCCCEEECCCC-cCCcccc
Confidence            345677888888776443111   12367899999999985 5553 2222222    23599999999995 5554111


Q ss_pred             HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF  211 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~-~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~  211 (276)
                      ......+++|++|+++++ .++...    .... ++|+.|++++| .++  .+..-...+++|+.|++++| .++..  .
T Consensus       392 ~~~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N-~l~~l--~  460 (520)
T 2z7x_B          392 KGDCSWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASN-QLKSV--P  460 (520)
T ss_dssp             GCSCCCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCCC--C
T ss_pred             cchhccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCC-cCCcc--C
Confidence            112334789999999987 565432    2233 68999999997 555  22221226899999999997 56531  1


Q ss_pred             HHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      .          . .+..++.|+.++++.+.+...
T Consensus       461 ~----------~-~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          461 D----------G-IFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             T----------T-TTTTCTTCCEEECCSSCBCCC
T ss_pred             H----------H-HhccCCcccEEECcCCCCccc
Confidence            1          0 245678888999988876654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.19  E-value=1.8e-08  Score=81.70  Aligned_cols=38  Identities=13%  Similarity=0.100  Sum_probs=25.2

Q ss_pred             HcCC-CccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          226 YHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       226 ~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      +.++ +.|+.++++.+.+... .      ...+++|+.|.+.+++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l-~------~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTAL-P------SKGLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCC-C------CTTCTTCSEEECTTC--
T ss_pred             hhccccCCcEEECCCCccccC-C------hhHhccCceeeccCccC
Confidence            4556 7788888877776533 1      13678888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.19  E-value=2.6e-07  Score=71.21  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=69.7

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      .+..++.++++++......   .+. ...++|+.|+++++ .+++.      . ....+++|+.|+++++ .++...- .
T Consensus        17 ~~~~L~~L~l~~n~l~~i~---~~~-~~~~~L~~L~Ls~N-~l~~~------~-~l~~l~~L~~L~Ls~N-~l~~~~~-~   82 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE---NLG-ATLDQFDAIDFSDN-EIRKL------D-GFPLLRRLKTLLVNNN-RICRIGE-G   82 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC---CGG-GGTTCCSEEECCSS-CCCEE------C-CCCCCSSCCEEECCSS-CCCEECS-C
T ss_pred             CcCCceEEEeeCCCCchhH---Hhh-hcCCCCCEEECCCC-CCCcc------c-ccccCCCCCEEECCCC-cccccCc-c
Confidence            3556677777766443211   111 23347777777774 44431      1 1234577777777774 5553211 1


Q ss_pred             HHhhCCCCCeEeccCCCCcCHHH-HHHHHHhCCCCcEEecCCCCCCCH--HHHHHHHhcCCCccEEecCCC
Q 023841          135 ISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~~~-l~~l~~~~~~L~~L~l~~c~~ltd--~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      +...+++|+.|+++++ .+++-. +..+ ..+++|+.|+++++ .+++  ..-..+...+|+|+.|+++++
T Consensus        83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            2234777777777766 443311 1222 36777777777775 3331  111123345777777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.17  E-value=6.3e-08  Score=90.28  Aligned_cols=157  Identities=14%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      +++++|+++++ .++......+     ..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++.-.-..+ .
T Consensus        25 ~~l~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~-~   94 (680)
T 1ziw_A           25 TNITVLNLTHN-QLRRLPAANF-----TRYSQLTSLDVGFN-TISKLEPELC-QKLPMLKVLNLQHN-ELSQLSDKTF-A   94 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCGGGG-----GGGTTCSEEECCSS-CCCCCCTTHH-HHCTTCCEEECCSS-CCCCCCTTTT-T
T ss_pred             CCCcEEECCCC-CCCCcCHHHH-----hCCCcCcEEECCCC-ccCccCHHHH-hcccCcCEEECCCC-ccCccChhhh-c
Confidence            68999999985 4433211112     22489999999985 5554332333 34899999999987 4542111122 3


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      ++++|++|+++++ .++.-.... ...+++|++|++++| .++....             ..+..+++|+.++++.+.+.
T Consensus        95 ~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           95 FCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKL-------------GTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCC-------------CSSSCCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCc-------------hhhcccccCCEEEccCCccc
Confidence            7899999999997 443211111 235899999999997 4543210             02456889999999888765


Q ss_pred             CCcceeEEEeeccCCCCceeeeecc
Q 023841          244 DHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                      ....-  .+....+++|+.|++..+
T Consensus       159 ~~~~~--~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          159 ALKSE--ELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CBCHH--HHGGGTTCEESEEECTTC
T ss_pred             ccCHH--HhhccccccccEEECCCC
Confidence            44111  111124578888888766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.12  E-value=2.2e-07  Score=73.52  Aligned_cols=112  Identities=11%  Similarity=0.088  Sum_probs=63.6

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  218 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~  218 (276)
                      +++|++|+++++ .++.-. ......+++|++|+++++ .++.-.. .....+++|++|+++++ .++...         
T Consensus        51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~---------  116 (208)
T 2o6s_A           51 LTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTN-QLQSLP---------  116 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC---------
T ss_pred             cccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCC-cCcccC---------
Confidence            455566655544 333110 111235677777777775 3431111 11235788999999886 555211         


Q ss_pred             hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          219 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       219 ~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                          ...+..+++|+.+++..+.+.....  ..+  ..+++|+.|++.+++-.+
T Consensus       117 ----~~~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          117 ----DGVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSCCBCC
T ss_pred             ----HhHhccCCcCCEEECCCCccceeCH--HHh--ccCCCccEEEecCCCeec
Confidence                1124567888899998877654311  112  567888888888765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.10  E-value=2.2e-07  Score=85.45  Aligned_cols=135  Identities=13%  Similarity=0.187  Sum_probs=82.4

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      +++++|++++ +.++.-.     ...-..+++|++|++++| .++.-.-.+ ...+++|++|+|+++ .++.-... ...
T Consensus        52 ~~~~~LdLs~-N~i~~l~-----~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~-~f~  121 (635)
T 4g8a_A           52 FSTKNLDLSF-NPLRHLG-----SYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-AFS  121 (635)
T ss_dssp             TTCCEEECTT-SCCCEEC-----TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEECGG-GGT
T ss_pred             cCCCEEEeeC-CCCCCCC-----HHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCC-cCCCCCHH-Hhc
Confidence            3799999998 4554311     111134689999999985 554321111 245889999999987 44421111 224


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      ++++|++|++++| .++.-.- .....+++|++|+++++ .++...+.            .....++.|+.++++.+.+.
T Consensus       122 ~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~------------~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          122 GLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLP------------EYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCC------------GGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccC-ccccCCCc------------hhhccchhhhhhcccCcccc
Confidence            7889999999987 4432110 01235788999999986 44332111            13456778888888877654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.09  E-value=2.6e-07  Score=74.42  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (276)
Q Consensus        59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  138 (276)
                      |..++.++....      .+.....++|+.|+++++ .++...-.     ....+++|+.|+++++ .++.... .....
T Consensus        21 ~~~v~c~~~~l~------~ip~~~~~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA------SVPAGIPTNAQILYLHDN-QITKLEPG-----VFDSLINLKELYLGSN-QLGALPV-GVFDS   86 (229)
T ss_dssp             TTEEECTTSCCS------SCCSCCCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred             CCEeEccCCCcC------ccCCCCCCCCCEEEcCCC-ccCccCHH-----HhhCccCCcEEECCCC-CCCCcCh-hhccc
Confidence            566666554322      122234578999999984 44431111     1134588999999984 5543211 12245


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  218 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~  218 (276)
                      +++|+.|+|+++ .++.-. ......+++|+.|+++++ .++  .+..-...+++|+.|+++++ .++...         
T Consensus        87 l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~---------  151 (229)
T 3e6j_A           87 LTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIP---------  151 (229)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCC---------
T ss_pred             CCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccC---------
Confidence            788999999876 454211 112236788999999886 454  11111245788999998886 554211         


Q ss_pred             hhhHHHHHcCCCccceecccccCCC
Q 023841          219 LLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       219 ~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                          ...+..++.|+.+++..+.+.
T Consensus       152 ----~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          152 ----HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ----TTTTTTCTTCCEEECTTSCBC
T ss_pred             ----HHHHhCCCCCCEEEeeCCCcc
Confidence                013456777888888777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.09  E-value=3.6e-06  Score=64.65  Aligned_cols=138  Identities=16%  Similarity=0.205  Sum_probs=91.1

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .++.  +..+...    .++|+.|+++++ .++.-  . ....+++|+.|+++++ .++.-. ..
T Consensus        16 ~~~~~L~~L~l~~n-~l~~--i~~~~~~----~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~~   82 (176)
T 1a9n_A           16 TNAVRDRELDLRGY-KIPV--IENLGAT----LDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNN-RICRIG-EG   82 (176)
T ss_dssp             ECTTSCEEEECTTS-CCCS--CCCGGGG----TTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSS-CCCEEC-SC
T ss_pred             CCcCCceEEEeeCC-CCch--hHHhhhc----CCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCC-cccccC-cc
Confidence            56889999999985 5542  1222222    359999999995 77763  2 2345889999999987 555321 12


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHH-HHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  239 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~-~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~  239 (276)
                      +...+++|+.|+++++ .+++-. +..+ ..+++|+.|+++++ .+++..-          .+......++.|+.+++..
T Consensus        83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~~----------~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKH----------YRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTT----------HHHHHHHHCTTCSEETTEE
T ss_pred             hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcHh----------HHHHHHHHCCccceeCCCc
Confidence            3347899999999997 555322 2223 36899999999997 4543211          1122456678888888866


Q ss_pred             cCCCC
Q 023841          240 SNGGD  244 (276)
Q Consensus       240 ~~~~~  244 (276)
                      +...+
T Consensus       150 n~~~~  154 (176)
T 1a9n_A          150 VKLKE  154 (176)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            65443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.09  E-value=3e-07  Score=84.54  Aligned_cols=136  Identities=18%  Similarity=0.171  Sum_probs=87.4

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      |...+.++++......-.   .-.+..+++|++|+++++ .++.     +....-..+++|++|+++++ .++.-.... 
T Consensus        51 p~~~~~LdLs~N~i~~l~---~~~f~~l~~L~~L~Ls~N-~i~~-----i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~-  119 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRC-EIQT-----IEDGAYQSLSHLSTLILTGN-PIQSLALGA-  119 (635)
T ss_dssp             CTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTC-CCCE-----ECTTTTTTCTTCCEEECTTC-CCCEECGGG-
T ss_pred             CcCCCEEEeeCCCCCCCC---HHHHhCCCCCCEEECCCC-cCCC-----cChhHhcCCCCCCEEEccCC-cCCCCCHHH-
Confidence            457789999987644311   122468899999999986 3432     11111234689999999995 665432222 


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      ...+++|++|+++++ .++.-.-.. ..++++|++|+++++ .++...+......+++|++|+++++ .++
T Consensus       120 f~~L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~  186 (635)
T 4g8a_A          120 FSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ  186 (635)
T ss_dssp             GTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred             hcCCCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence            245899999999987 444211111 247889999999996 4443222233446899999999997 454

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.06  E-value=1.9e-07  Score=79.36  Aligned_cols=190  Identities=13%  Similarity=0.093  Sum_probs=85.3

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      +.++.++++++......   .-.+..+++|++|+++++ .++...-..     ...+++|++|+++++ .++.-..    
T Consensus        54 ~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~l~~----  119 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNN-KISKIHEKA-----FSPLRKLQKLYISKN-HLVEIPP----  119 (332)
T ss_dssp             TTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECGGG-----STTCTTCCEEECCSS-CCCSCCS----
T ss_pred             CCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCC-ccCccCHhH-----hhCcCCCCEEECCCC-cCCccCc----
Confidence            34566666655432211   011246677777777764 333211111     123467777777763 4432110    


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEecCCCCCCCHHH------
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQL-IADNYQELESLNLTRYVNMILLG------  209 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~-l~~~~~~L~~L~l~~c~~it~~~------  209 (276)
                      ...++|++|+++++ .++.-.. .....+++|++|+++++ .+++.++.. ....+ +|+.|+++++ .++...      
T Consensus       120 ~~~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~  194 (332)
T 2ft3_A          120 NLPSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPET  194 (332)
T ss_dssp             SCCTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSS
T ss_pred             cccccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCC
Confidence            11256777777654 3332111 11235667777777765 333211110 01112 4555555554 222200      


Q ss_pred             HHHHHh-cC-chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          210 LFYIWS-NN-ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       210 l~~l~~-~~-~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +..+.- ++ ........+.+++.|+.++++++.+..... . .+  ..+++|++|++.++.
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~-~~--~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-G-SL--SFLPTLRELHLDNNK  252 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-T-GG--GGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-h-Hh--hCCCCCCEEECCCCc
Confidence            000000 00 000000134556777777777776654421 1 12  567888888887763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.06  E-value=2.1e-07  Score=74.51  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=78.2

Q ss_pred             CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (276)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~  162 (276)
                      .++++.|+++++ .++...     ......+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-. ..+.
T Consensus        31 ~~~l~~L~l~~n-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f  100 (220)
T 2v9t_B           31 PETITEIRLEQN-TIKVIP-----PGAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLF  100 (220)
T ss_dssp             CTTCCEEECCSS-CCCEEC-----TTSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTT
T ss_pred             CcCCCEEECCCC-cCCCcC-----HhHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHc
Confidence            368899999884 443211     111234588999999884 5554221222 34788888888876 444211 1122


Q ss_pred             HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCC
Q 023841          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG  242 (276)
Q Consensus       163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~  242 (276)
                      .++++|+.|+++++ .++...... ...+++|+.|+++++ .++...             ...+..++.|+.+++..+.+
T Consensus       101 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          101 EGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIA-------------KGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCC-------------TTTTTTCTTCCEEECCSSCE
T ss_pred             cCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEEC-------------HHHHhCCCCCCEEEeCCCCc
Confidence            36778888888886 444221111 224778888888886 454321             01244567777777766664


Q ss_pred             C
Q 023841          243 G  243 (276)
Q Consensus       243 ~  243 (276)
                      .
T Consensus       165 ~  165 (220)
T 2v9t_B          165 I  165 (220)
T ss_dssp             E
T ss_pred             C
Confidence            3

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.06  E-value=8.3e-07  Score=82.27  Aligned_cols=178  Identities=12%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             cccCCCccEEeccCCCCCcHH-------------HHHHHHHHccC--CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCe
Q 023841           80 IPRYRHVREINLEFAQDIEDR-------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV  144 (276)
Q Consensus        80 ~~~~~~L~~L~l~~~~~l~~~-------------~~~~i~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~  144 (276)
                      +..+++|++|+++++ .++..             ....+... ..  .+++|++|++++| .+....-..+ ..+++|++
T Consensus       202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~  277 (636)
T 4eco_A          202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFL-KALPEMQL  277 (636)
T ss_dssp             GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTT-TTCSSCCE
T ss_pred             HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHH-hcCCCCCE
Confidence            356788888888875 45541             11112111 12  4578888888886 3222111112 34778888


Q ss_pred             EeccCCCCcCH-HHHHHHH-----HhCCCCcEEecCCCCCCCHHHHHH--HHhcCCCccEEecCCCCCCC-HHHHHHHHh
Q 023841          145 FSIYWNVRVTD-IGIQHLV-----KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI-LLGLFYIWS  215 (276)
Q Consensus       145 L~L~~~~~l~~-~~l~~l~-----~~~~~L~~L~l~~c~~ltd~~~~~--l~~~~~~L~~L~l~~c~~it-~~~l~~l~~  215 (276)
                      |+++++..++. ..-..+.     ..+++|++|++++| .++  .+..  ....+++|+.|+++++ .++ .-.  .+..
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~  351 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN-QLEGKLP--AFGS  351 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC-CCEEECC--CCEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC-cCccchh--hhCC
Confidence            88888743665 3323333     13478888888886 454  2222  2335778888888886 444 211  1100


Q ss_pred             ----------cCchhhHHHHHcCCCc-cceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          216 ----------NNILLMSEFIYHGIRF-FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       216 ----------~~~~~l~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                                .+........+.+++. |+.++++.+.+... .  ..+....+++|+.|++..+.-
T Consensus       352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p--~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-P--NIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-C--SCCCTTCSSCEEEEECCSSCT
T ss_pred             CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-c--hhhhhcccCccCEEECcCCcC
Confidence                      0000000012344556 77777777766522 1  222112345788888877653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.04  E-value=2e-08  Score=81.42  Aligned_cols=181  Identities=9%  Similarity=0.087  Sum_probs=107.1

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +..++.+++++........   -.+..+++|++|+++++..++.-.     ......+++|++|++++|+.++...-.. 
T Consensus        30 ~~~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~l~~~n~l~~i~~~~-  100 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLE-----SHSFYNLSKVTHIEIRNTRNLTYIDPDA-  100 (239)
T ss_dssp             CTTCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEEC-----TTTEESCTTCCEEEEEEETTCCEECTTS-
T ss_pred             CCcccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeC-----HhHcCCCcCCcEEECCCCCCeeEcCHHH-
Confidence            3466778887765432111   123578899999999863243211     1111346899999999755665422111 


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCc---EEecCCCCCCCHHHHHHHHhcCCCcc-EEecCCCCCCCHHHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII---DLNLSGCKNLLDKSLQLIADNYQELE-SLNLTRYVNMILLGLF  211 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~---~L~l~~c~~ltd~~~~~l~~~~~~L~-~L~l~~c~~it~~~l~  211 (276)
                      ...+++|++|+++++ .++.  +.. ...+++|+   .|+++++..++.-.... ...+++|+ .|+++++ .++.-.- 
T Consensus       101 f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n-~l~~i~~-  173 (239)
T 2xwt_C          101 LKELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN-GFTSVQG-  173 (239)
T ss_dssp             EECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC-CCCEECT-
T ss_pred             hCCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC-CCcccCH-
Confidence            234889999999876 3432  212 23677777   99999864554211111 23578899 9999986 5543110 


Q ss_pred             HHHhcCchhhHHHHHcCCCccceecccccC-CCCCcceeEEEeeccC-CCCceeeeecce
Q 023841          212 YIWSNNILLMSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTY-KHGKEKHIIETI  269 (276)
Q Consensus       212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~-~~L~~l~~~~~~  269 (276)
                                  ..+.+ +.|+.+++..+. +... .. ..+  ..+ ++|+.|++.++.
T Consensus       174 ------------~~~~~-~~L~~L~L~~n~~l~~i-~~-~~~--~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          174 ------------YAFNG-TKLDAVYLNKNKYLTVI-DK-DAF--GGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             ------------TTTTT-CEEEEEECTTCTTCCEE-CT-TTT--TTCSBCCSEEECTTCC
T ss_pred             ------------hhcCC-CCCCEEEcCCCCCcccC-CH-HHh--hccccCCcEEECCCCc
Confidence                        02233 678888888773 5422 11 112  466 899999988753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.01  E-value=3.3e-07  Score=84.94  Aligned_cols=35  Identities=11%  Similarity=-0.080  Sum_probs=17.0

Q ss_pred             cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841          227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                      ..++.|+.++++++.++.. +.      .-+++|+.|++.++
T Consensus       563 ~~l~~L~~L~Ls~N~l~~i-p~------~~~~~L~~L~Ls~N  597 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKV-NE------KITPNISVLDIKDN  597 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBC-CS------CCCTTCCEEECCSC
T ss_pred             hcCCCCCEEECCCCcCCcc-CH------hHhCcCCEEECcCC
Confidence            3455555666655554222 11      11256666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.00  E-value=3e-07  Score=73.57  Aligned_cols=154  Identities=10%  Similarity=0.062  Sum_probs=84.1

Q ss_pred             ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (276)
Q Consensus        59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  138 (276)
                      |+.+++++.....      +...-.+.+++|+++++ .++...-....    ..+++|+.|+++++ .++...-..+ ..
T Consensus        13 ~~~l~~s~n~l~~------iP~~~~~~~~~L~L~~N-~l~~~~~~~~~----~~l~~L~~L~L~~N-~i~~i~~~~~-~~   79 (220)
T 2v70_A           13 GTTVDCSNQKLNK------IPEHIPQYTAELRLNNN-EFTVLEATGIF----KKLPQLRKINFSNN-KITDIEEGAF-EG   79 (220)
T ss_dssp             TTEEECCSSCCSS------CCSCCCTTCSEEECCSS-CCCEECCCCCG----GGCTTCCEEECCSS-CCCEECTTTT-TT
T ss_pred             CCEeEeCCCCccc------CccCCCCCCCEEEcCCC-cCCccCchhhh----ccCCCCCEEECCCC-cCCEECHHHh-CC
Confidence            4567766654322      22123456788888874 44322100001    22478888888884 5554221122 34


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  218 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~  218 (276)
                      +++|++|+++++ .++...-.. ...+++|+.|+++++ .++...... ...+++|+.|+++++ .++...         
T Consensus        80 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~---------  145 (220)
T 2v70_A           80 ASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVA---------  145 (220)
T ss_dssp             CTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBC---------
T ss_pred             CCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEEC---------
Confidence            778888888876 443221111 236778888888886 443211111 124678888888886 454311         


Q ss_pred             hhhHHHHHcCCCccceecccccCCC
Q 023841          219 LLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       219 ~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                          ...+.+++.|+.++++.+.+.
T Consensus       146 ----~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          146 ----PGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ----TTTTTTCTTCCEEECCSCCEE
T ss_pred             ----HHHhcCCCCCCEEEecCcCCc
Confidence                013445677777777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.99  E-value=5.3e-07  Score=72.13  Aligned_cols=133  Identities=17%  Similarity=0.207  Sum_probs=84.4

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +..++.+++++.......   .-.+..+++|+.|+++++ .++...-..     ...+++|++|+++++ .++...- .+
T Consensus        31 ~~~l~~L~l~~n~i~~i~---~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~-~~   99 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNN-QISELAPDA-----FQGLRSLNSLVLYGN-KITELPK-SL   99 (220)
T ss_dssp             CTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECCSS-CCCEECTTT-----TTTCSSCCEEECCSS-CCCCCCT-TT
T ss_pred             CcCCCEEECCCCcCCCcC---HhHhhCCCCCCEEECCCC-cCCCcCHHH-----hhCCcCCCEEECCCC-cCCccCH-hH
Confidence            346778888876543211   112367899999999985 444221111     234689999999994 6653211 12


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      ...+++|+.|+|+++ .++......+ ..+++|+.|+++++ .++.-... ....+++|++|++++++
T Consensus       100 f~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          100 FEGLFSLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCC
Confidence            245899999999986 4543222222 36889999999997 44422211 12358899999999963

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.96  E-value=3.1e-06  Score=77.17  Aligned_cols=132  Identities=13%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN  190 (276)
Q Consensus       112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~  190 (276)
                      .+++|++|+++++ .+++.....+ ..+++|+.|+++++ .++. ..+......+++|+.|+++++ .++...-......
T Consensus       351 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~  426 (562)
T 3a79_B          351 SPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW  426 (562)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred             CCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence            4577888888874 5554222222 34777888888876 4543 122222346778888888876 3432111112234


Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCC-CccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          191 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       191 ~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +++|+.|++++| .++..                ....+ +.|+.++++++.+..-   ...+  ..+++|+.|++.++.
T Consensus       427 l~~L~~L~l~~n-~l~~~----------------~~~~l~~~L~~L~L~~N~l~~i---p~~~--~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          427 AESILVLNLSSN-MLTGS----------------VFRCLPPKVKVLDLHNNRIMSI---PKDV--THLQALQELNVASNQ  484 (562)
T ss_dssp             CTTCCEEECCSS-CCCGG----------------GGSSCCTTCSEEECCSSCCCCC---CTTT--TSSCCCSEEECCSSC
T ss_pred             cccCCEEECCCC-CCCcc----------------hhhhhcCcCCEEECCCCcCccc---Chhh--cCCCCCCEEECCCCC
Confidence            677888888886 55532                12223 5788999988876532   1112  368899999988764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.95  E-value=4.3e-07  Score=72.66  Aligned_cols=133  Identities=15%  Similarity=0.138  Sum_probs=83.7

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ...+.+++++.........  -.+..+++|++|+++++ .++...     ......+++|++|+++++ .++...-.. .
T Consensus        32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~  101 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNN-KITDIE-----EGAFEGASGVNEILLTSN-RLENVQHKM-F  101 (220)
T ss_dssp             TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCCCCCGGG-G
T ss_pred             CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCC-cCCEEC-----HHHhCCCCCCCEEECCCC-ccCccCHhH-h
Confidence            3456788887654432110  01357899999999984 454321     111234689999999994 665432222 2


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      ..+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++.-.... ...+++|++|++++++
T Consensus       102 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          102 KGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred             cCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence            45899999999986 4443211222 36889999999996 454321112 2358999999999973

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.92  E-value=4.8e-07  Score=77.91  Aligned_cols=162  Identities=12%  Similarity=0.097  Sum_probs=97.1

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      -.+.++.|+++++ .++......+    ...+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-.- ..
T Consensus        37 ~~~~l~~L~Ls~N-~l~~l~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~  107 (361)
T 2xot_A           37 LPSYTALLDLSHN-NLSRLRAEWT----PTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDE-FL  107 (361)
T ss_dssp             CCTTCSEEECCSS-CCCEECTTSS----SSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TT
T ss_pred             CCCCCCEEECCCC-CCCccChhhh----hhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCCH-HH
Confidence            3457999999984 5543211111    114689999999994 6665332222 34889999999986 4543211 12


Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      ...+++|+.|+++++ .++.-.... ...+++|+.|+++++ .++......+        .  ....++.|+.++++++.
T Consensus       108 ~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~--------~--~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          108 FSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELI--------K--DGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGT--------C------CTTCCEEECCSSC
T ss_pred             hCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHh--------c--CcccCCcCCEEECCCCC
Confidence            247889999999996 554221111 235889999999997 5654111000        0  11457889999998888


Q ss_pred             CCCCcceeEEEeeccCCC--Cceeeeecce
Q 023841          242 GGDHLAFAYIIETNTYKH--GKEKHIIETI  269 (276)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~--L~~l~~~~~~  269 (276)
                      +... ....+   ..+++  |+.|.+.+.+
T Consensus       175 l~~l-~~~~~---~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          175 LKKL-PLTDL---QKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCC-CHHHH---HHSCHHHHTTEECCSSC
T ss_pred             CCcc-CHHHh---hhccHhhcceEEecCCC
Confidence            7654 22111   34454  3677777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.92  E-value=2e-07  Score=89.24  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=103.3

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      -.+++++|+++++ .++.....     ....+++|+.|++++|..+..-.-.. ...+++|+.|+|+++ .++...-..+
T Consensus        22 lp~~l~~LdLs~N-~i~~i~~~-----~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~   93 (844)
T 3j0a_A           22 VLNTTERLLLSFN-YIRTVTAS-----SFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAF   93 (844)
T ss_dssp             SCTTCCEEEEESC-CCCEECSS-----SCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSS
T ss_pred             CCCCcCEEECCCC-cCCccChh-----HCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHc
Confidence            3478999999985 44422111     12456999999999973332211111 245899999999987 4543222222


Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          162 VKNCKHIIDLNLSGCKNLLDKSLQL-IADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       162 ~~~~~~L~~L~l~~c~~ltd~~~~~-l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                       .++++|++|++++| .+++..... ....+++|++|++++| .++.....            ..+..+++|+.++++.+
T Consensus        94 -~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~------------~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           94 -QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH------------PSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             -CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC------------GGGGTCSSCCEEEEESS
T ss_pred             -cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccc------------hhHhhCCCCCEEECCCC
Confidence             37899999999997 554322211 1336899999999997 55432110            14678899999999888


Q ss_pred             CCCCCcceeEEEeeccC--CCCceeeeecceec
Q 023841          241 NGGDHLAFAYIIETNTY--KHGKEKHIIETIKT  271 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~--~~L~~l~~~~~~~~  271 (276)
                      .+.... ...+   ..+  ++|+.|.+..+.-.
T Consensus       159 ~i~~~~-~~~l---~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          159 QIFLVC-EHEL---EPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCCCCC-SGGG---HHHHHCSSCCCEECCSBSC
T ss_pred             cCCeeC-HHHc---ccccCCccceEECCCCccc
Confidence            765441 1111   222  78999999887543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.88  E-value=2e-06  Score=69.18  Aligned_cols=132  Identities=15%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.++++++.......   -.+..+++|++|+++++ .++..     .......+++|+.|+++++ .++...- ..
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N-~l~~i-----~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~  107 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSN-QLGAL-----PVGVFDSLTQLTVLDLGTN-QLTVLPS-AV  107 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCT-TT
T ss_pred             CCCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCC-CCCCc-----ChhhcccCCCcCEEECCCC-cCCccCh-hH
Confidence            4678889998876543211   12357899999999985 44321     1111234699999999994 6654221 12


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      ...+++|++|+++++ .++  .+..-...+++|+.|+++++ .++.-.. .....+++|+.|++++++
T Consensus       108 ~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          108 FDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             hCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            245899999999986 555  12112257899999999996 5542111 223458999999999963

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.84  E-value=1.4e-06  Score=75.05  Aligned_cols=135  Identities=18%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             CccEEecCCccCcchhhHHHhccc-cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIP-RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~-~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      .++.+++++........   -... .+++|+.|+++++ .++...-..     ...+++|++|+++++ .++...-. ..
T Consensus        40 ~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N-~i~~i~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~-~~  108 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHN-HLNFISSEA-----FVPVPNLRYLDLSSN-HLHTLDEF-LF  108 (361)
T ss_dssp             TCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTT-TT
T ss_pred             CCCEEECCCCCCCccCh---hhhhhcccccCEEECCCC-cCCccChhh-----ccCCCCCCEEECCCC-cCCcCCHH-Hh
Confidence            45556666554332111   1112 5677777777763 333211111     123467777777773 44432111 12


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCccEEecCCCCCCCH
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI--ADNYQELESLNLTRYVNMIL  207 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l--~~~~~~L~~L~l~~c~~it~  207 (276)
                      ..+++|+.|+|+++ .++.-.-.. ...+++|++|+++++ .++.-....+  ...+++|+.|+|+++ .++.
T Consensus       109 ~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  177 (361)
T 2xot_A          109 SDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKK  177 (361)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred             CCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence            23667777777765 333211111 125667777777765 3332111111  023666777777765 4443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.81  E-value=9.5e-07  Score=69.33  Aligned_cols=108  Identities=18%  Similarity=0.289  Sum_probs=72.9

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .++.  +..+. .    +++|+.|+++++ .++.  +......+++|+.|+++++ .++.  +..
T Consensus        45 ~~l~~L~~L~ls~n-~l~~--l~~~~-~----l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~  110 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEK--ISSLS-G----MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG  110 (198)
T ss_dssp             HHTTTCSEEECSEE-EESC--CCCHH-H----HTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH
T ss_pred             hcCCCCCEEECCCC-CCcc--ccccc-c----CCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc
Confidence            56889999999874 3433  11222 2    388999999985 5553  2233344678999999987 5554  233


Q ss_pred             HHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCccEEecCCCCCCC
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      +. .+++|+.|+++++ .+++- .+..+ ..+++|++|+++++ .++
T Consensus       111 ~~-~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~l~  153 (198)
T 1ds9_A          111 IE-KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGN-PLY  153 (198)
T ss_dssp             HH-HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSC-HHH
T ss_pred             cc-cCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCC-ccc
Confidence            33 6788999999996 56643 33334 35899999999997 443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.79  E-value=4.1e-05  Score=70.62  Aligned_cols=77  Identities=10%  Similarity=-0.003  Sum_probs=44.6

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      ++|+.|++++| .++.     +...+++|+.|+++++ .++.-                 ...+++|+.++++++.+...
T Consensus       221 ~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N-~L~~l-----------------p~~~~~L~~L~Ls~N~L~~l  276 (622)
T 3g06_A          221 SGLKELIVSGN-RLTS-----LPVLPSELKELMVSGN-RLTSL-----------------PMLPSGLLSLSVYRNQLTRL  276 (622)
T ss_dssp             TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCC-----------------CCCCTTCCEEECCSSCCCSC
T ss_pred             CCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCC-CCCcC-----------------CcccccCcEEeCCCCCCCcC
Confidence            45666666554 3332     1133456666666665 34310                 01456788888888877633


Q ss_pred             cceeEEEeeccCCCCceeeeecceec
Q 023841          246 LAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       246 ~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                       .  ..+  ..+++|+.|++.+++-.
T Consensus       277 -p--~~l--~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          277 -P--ESL--IHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             -C--GGG--GGSCTTCEEECCSCCCC
T ss_pred             -C--HHH--hhccccCEEEecCCCCC
Confidence             2  123  67889999999887643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.66  E-value=3.8e-06  Score=64.53  Aligned_cols=129  Identities=13%  Similarity=0.093  Sum_probs=78.8

Q ss_pred             ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (276)
Q Consensus        59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  138 (276)
                      |+.++++......      +.....++|++|+++++ .++...     ......+++|++|+++++ .++...- .....
T Consensus         9 ~~~l~~~~~~l~~------~p~~~~~~l~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSKGLTS------VPTGIPSSATRLELESN-KLQSLP-----HGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDK   74 (177)
T ss_dssp             TTEEECCSSCCSS------CCTTCCTTCSEEECCSS-CCCCCC-----TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTT
T ss_pred             CCEEEecCCCCcc------CCCCCCCCCcEEEeCCC-cccEeC-----HHHhcCcccccEEECCCC-cceEeCh-hHccC
Confidence            5667776654322      11233578999999984 443211     111134589999999984 6653221 11235


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      +++|++|+++++ .++.-. ......+++|+.|+++++ .++.-.. .....+++|++|+++++ .++
T Consensus        75 l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~~~  137 (177)
T 2o6r_A           75 LTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN-PWD  137 (177)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CBC
T ss_pred             CCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC-Cee
Confidence            889999999986 454211 112246789999999996 5542111 22345889999999997 443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.64  E-value=9e-06  Score=74.24  Aligned_cols=125  Identities=10%  Similarity=0.013  Sum_probs=75.3

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      ..|+.|+++++ .++.  +-. ...+++|+.|+|+++ .++  .+..-...+++|+.|+++++ .++.  +.. ...+++
T Consensus       441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~  509 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPR  509 (567)
T ss_dssp             TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSS
T ss_pred             cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCC
Confidence            46888888884 5554  222 344778888888876 454  22112336788888888886 4543  222 335788


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcc-eeEEEeeccCCCCceee
Q 023841          194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLA-FAYIIETNTYKHGKEKH  264 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~~L~~l~  264 (276)
                      |+.|+++++ .++....            ...+.+++.|+.++++.+.+..... ...+.  ..+|+|+.|+
T Consensus       510 L~~L~Ls~N-~l~~~~~------------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~--~~lp~L~~L~  566 (567)
T 1dce_A          510 LQELLLCNN-RLQQSAA------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLA--EMLPSVSSIL  566 (567)
T ss_dssp             CCEEECCSS-CCCSSST------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHHH--HHCTTCSEEE
T ss_pred             CcEEECCCC-CCCCCCC------------cHHHhcCCCCCEEEecCCcCCCCccHHHHHH--HHCcccCccC
Confidence            888888886 5543210            0135567788888887777654322 11222  4477887775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.60  E-value=2e-06  Score=67.13  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=76.7

Q ss_pred             ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (276)
Q Consensus        59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  138 (276)
                      |+.+++++.....      +...-.++++.|+++++ .++......+.    ..+++|++|+++++ .++...-..+ ..
T Consensus        10 ~~~l~~s~~~l~~------ip~~~~~~l~~L~l~~n-~i~~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~   76 (192)
T 1w8a_A           10 GTTVDCTGRGLKE------IPRDIPLHTTELLLNDN-ELGRISSDGLF----GRLPHLVKLELKRN-QLTGIEPNAF-EG   76 (192)
T ss_dssp             TTEEECTTSCCSS------CCSCCCTTCSEEECCSC-CCCSBCCSCSG----GGCTTCCEEECCSS-CCCCBCTTTT-TT
T ss_pred             CCEEEcCCCCcCc------CccCCCCCCCEEECCCC-cCCccCCcccc----ccCCCCCEEECCCC-CCCCcCHhHc-CC
Confidence            5667777654321      11123348999999984 44321111011    23589999999994 6654322222 34


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      +++|++|+++++ .++......+ ..+++|++|+++++ .++...... ...+++|++|++++++
T Consensus        77 l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           77 ASHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CTTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred             cccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence            789999999986 4543221112 36789999999996 554321111 2357899999999973

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.59  E-value=5.2e-06  Score=65.03  Aligned_cols=124  Identities=21%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      .+.++.++++++....-.     .+..+++|+.|+++++ .++.  +......+    ++|+.|+++++ .++..  ..+
T Consensus        47 l~~L~~L~ls~n~l~~l~-----~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~----~~L~~L~L~~N-~l~~l--~~~  111 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRN-LIKK--IENLDAVA----DTLEELWISYN-QIASL--SGI  111 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-----CHHHHTTCCEEEEEEE-EECS--CSSHHHHH----HHCSEEEEEEE-ECCCH--HHH
T ss_pred             CCCCCEEECCCCCCcccc-----ccccCCCCCEEECCCC-Cccc--ccchhhcC----CcCCEEECcCC-cCCcC--Ccc
Confidence            456788888876543311     2356899999999985 3431  11222222    78999999995 67663  333


Q ss_pred             HhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCHH---------HHHHHHhcCCCccEEe
Q 023841          136 SSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDK---------SLQLIADNYQELESLN  198 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd~---------~~~~l~~~~~~L~~L~  198 (276)
                      . .+++|+.|+++++ .+++- .+..+. .+++|++|+++++ .+++.         ....+...+|+|+.|+
T Consensus       112 ~-~l~~L~~L~l~~N-~i~~~~~~~~l~-~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          112 E-KLVNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             H-HHHHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             c-cCCCCCEEECCCC-cCCchhHHHHHh-cCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            3 4789999999987 56653 334444 7999999999997 44322         1223455799999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.47  E-value=0.00019  Score=63.63  Aligned_cols=13  Identities=15%  Similarity=0.110  Sum_probs=7.0

Q ss_pred             cCCCccEEecCCC
Q 023841          190 NYQELESLNLTRY  202 (276)
Q Consensus       190 ~~~~L~~L~l~~c  202 (276)
                      .+++|++|+++++
T Consensus       235 ~l~~L~~L~l~~N  247 (454)
T 1jl5_A          235 NLPFLTTIYADNN  247 (454)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            3455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.40  E-value=5e-05  Score=69.30  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      ..|+.|+++++ .++.  +..+     ..+++|+.|+++++ .++.  +-.-...+++|+.|+|+++ .++.  +..+ .
T Consensus       441 ~~L~~L~Ls~n-~l~~--lp~~-----~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~  505 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTV--LCHL-----EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-A  505 (567)
T ss_dssp             TTCSEEECTTS-CCSS--CCCG-----GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-T
T ss_pred             cCceEEEecCC-CCCC--CcCc-----cccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCC--Cccc-C
Confidence            35888999884 4443  1111     22488999999984 5552  2112345889999999876 5553  3333 3


Q ss_pred             hCCCCcEEecCCCCCCCHHH-HHHHHhcCCCccEEecCCCCCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMI  206 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~-~~~l~~~~~~L~~L~l~~c~~it  206 (276)
                      .+++|+.|+++++ .++... ...+ ..+++|+.|+++++ .++
T Consensus       506 ~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N-~l~  546 (567)
T 1dce_A          506 NLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLC  546 (567)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGG
T ss_pred             CCCCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCC-cCC
Confidence            6889999999986 554332 2222 35889999999987 454

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.38  E-value=0.00011  Score=67.11  Aligned_cols=34  Identities=3%  Similarity=-0.254  Sum_probs=21.0

Q ss_pred             cceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841          232 FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  270 (276)
Q Consensus       232 L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~  270 (276)
                      |+.++++++.++.. +  ..+  ..+++|+.|++.++.-
T Consensus       209 L~~L~Ls~N~l~~l-p--~~l--~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          209 EIFFRCRENRITHI-P--ENI--LSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CEEEECCSSCCCCC-C--GGG--GGSCTTEEEECCSSSC
T ss_pred             ceEEecCCCcceec-C--HHH--hcCCCCCEEEeeCCcC
Confidence            36777777666533 1  111  3478888888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.38  E-value=1.2e-05  Score=62.83  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (276)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~  162 (276)
                      .++|++|+++++ .++.-. ..+     ..+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-.-..+ 
T Consensus        30 ~~~l~~L~L~~n-~i~~ip-~~~-----~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f-   98 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTLVP-KEL-----SNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTF-   98 (193)
T ss_dssp             CTTCCEEECCSS-CCCSCC-GGG-----GGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTT-
T ss_pred             CCCCCEEECCCC-cCchhH-HHh-----hcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHHh-
Confidence            468999999984 444211 111     23589999999984 6654322222 34789999999976 4443221222 


Q ss_pred             HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      ..+++|+.|+++++ .++.-.. .....+++|+.|++++++
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence            36789999999996 4542111 122357899999999863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.34  E-value=0.00054  Score=63.14  Aligned_cols=83  Identities=19%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      ++|+.|+++++ .++.-     ...+++|+.|+++++ .++     .+...+++|+.|++++| .++  .+..-...+++
T Consensus       221 ~~L~~L~Ls~N-~L~~l-----p~~l~~L~~L~Ls~N-~L~-----~lp~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~  285 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSL-----PVLPSELKELMVSGN-RLT-----SLPMLPSGLLSLSVYRN-QLT--RLPESLIHLSS  285 (622)
T ss_dssp             TTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCS-----CCCCCCTTCCEEECCSS-CCC--SCCGGGGGSCT
T ss_pred             CCCCEEEccCC-ccCcC-----CCCCCcCcEEECCCC-CCC-----cCCcccccCcEEeCCCC-CCC--cCCHHHhhccc
Confidence            55666666663 44431     134566777777665 343     12224567777777775 444  11111335677


Q ss_pred             ccEEecCCCCCCCHHHHHH
Q 023841          194 LESLNLTRYVNMILLGLFY  212 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~  212 (276)
                      |+.|+++++ .++......
T Consensus       286 L~~L~L~~N-~l~~~~~~~  303 (622)
T 3g06_A          286 ETTVNLEGN-PLSERTLQA  303 (622)
T ss_dssp             TCEEECCSC-CCCHHHHHH
T ss_pred             cCEEEecCC-CCCCcCHHH
Confidence            777777776 566544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=5.5e-05  Score=64.02  Aligned_cols=13  Identities=0%  Similarity=0.005  Sum_probs=8.7

Q ss_pred             ccCCCccEEeccC
Q 023841           81 PRYRHVREINLEF   93 (276)
Q Consensus        81 ~~~~~L~~L~l~~   93 (276)
                      ..|++|+.+++.+
T Consensus       121 ~~~~~L~~l~l~~  133 (329)
T 3sb4_A          121 KGCDNLKICQIRK  133 (329)
T ss_dssp             TTCTTCCEEEBCC
T ss_pred             hcCcccceEEcCC
Confidence            5667777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.30  E-value=0.00083  Score=59.49  Aligned_cols=12  Identities=8%  Similarity=0.052  Sum_probs=6.5

Q ss_pred             cCCCccEEeccC
Q 023841           82 RYRHVREINLEF   93 (276)
Q Consensus        82 ~~~~L~~L~l~~   93 (276)
                      .+++|++|++++
T Consensus       235 ~l~~L~~L~l~~  246 (454)
T 1jl5_A          235 NLPFLTTIYADN  246 (454)
T ss_dssp             TCTTCCEEECCS
T ss_pred             CCCCCCEEECCC
Confidence            445555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.29  E-value=4.5e-05  Score=71.72  Aligned_cols=13  Identities=31%  Similarity=0.266  Sum_probs=6.7

Q ss_pred             hCCCCcEEecCCC
Q 023841          164 NCKHIIDLNLSGC  176 (276)
Q Consensus       164 ~~~~L~~L~l~~c  176 (276)
                      .+++|+.|+|+++
T Consensus       268 ~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          268 NLSNLRVLDLSHN  280 (727)
T ss_dssp             GGTTCCEEECTTS
T ss_pred             CCCCCCEEeCcCC
Confidence            4455555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.19  E-value=0.00011  Score=67.03  Aligned_cols=158  Identities=14%  Similarity=0.067  Sum_probs=97.6

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ..++.++++++...+      +...-+++|+.|+++++ .++.     +    +..+++|+.|+++++ .++.  +..  
T Consensus        59 ~~L~~L~Ls~n~L~~------lp~~l~~~L~~L~Ls~N-~l~~-----i----p~~l~~L~~L~Ls~N-~l~~--ip~--  117 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS------LPDNLPPQITVLEITQN-ALIS-----L----PELPASLEYLDACDN-RLST--LPE--  117 (571)
T ss_dssp             TTCSEEECCSSCCSC------CCSCCCTTCSEEECCSS-CCSC-----C----CCCCTTCCEEECCSS-CCSC--CCC--
T ss_pred             CCccEEEeCCCCCCc------cCHhHcCCCCEEECcCC-CCcc-----c----ccccCCCCEEEccCC-CCCC--cch--
Confidence            367888888765432      11123578999999984 4542     1    123589999999985 6554  211  


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                       ...+|+.|+++++ .++.     +...+++|+.|+++++ .++.  +   ...+++|+.|++++| .++.-  .     
T Consensus       118 -l~~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~l~~--l---p~~l~~L~~L~Ls~N-~L~~l--p-----  176 (571)
T 3cvr_A          118 -LPASLKHLDVDNN-QLTM-----LPELPALLEYINADNN-QLTM--L---PELPTSLEVLSVRNN-QLTFL--P-----  176 (571)
T ss_dssp             -CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCSCC--C-----
T ss_pred             -hhcCCCEEECCCC-cCCC-----CCCcCccccEEeCCCC-ccCc--C---CCcCCCcCEEECCCC-CCCCc--c-----
Confidence             1238999999986 4443     2226789999999996 4542  1   124789999999997 55431  1     


Q ss_pred             CchhhHHHHHcCCCccceecccccCCCCCcceeEEEe--eccCCCCceeeeecce
Q 023841          217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIE--TNTYKHGKEKHIIETI  269 (276)
Q Consensus       217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~~~L~~l~~~~~~  269 (276)
                        .      +.  ++|+.++++++.++.. +.  +..  ....+.|+.|++.++.
T Consensus       177 --~------l~--~~L~~L~Ls~N~L~~l-p~--~~~~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          177 --E------LP--ESLEALDVSTNLLESL-PA--VPVRNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             --C------CC--TTCCEEECCSSCCSSC-CC--CC--------CCEEEECCSSC
T ss_pred             --h------hh--CCCCEEECcCCCCCch-hh--HHHhhhcccccceEEecCCCc
Confidence              0      11  6788999988887643 21  110  0112223888887753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.16  E-value=4.6e-05  Score=71.67  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|+.|+++++. +..-. ..+.     .+++|++|+++++ .++.  +-.-...+++|+.|+|+++ .++  .+..
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~l~-~~~~-----~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~  287 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFNIS-ANIF-----KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPA  287 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSCCC-GGGG-----GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTS-CCS--SCCS
T ss_pred             ccCCCCcEEECCCCC-CCCCC-hhhc-----CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCC-cCC--ccCh
Confidence            567899999999853 33100 0111     2589999999995 6652  1111245899999999987 565  2221


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHH
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL  208 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~  208 (276)
                      -...+++|+.|+|++| .++  .+..-...+++|+.|+|+++ .++..
T Consensus       288 ~~~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~  331 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGN-PLEKQ  331 (727)
T ss_dssp             SGGGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTS-CCCSH
T ss_pred             hhcCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCC-ccCCC
Confidence            1247889999999997 554  11111346899999999997 67654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=5.2e-05  Score=64.17  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~  150 (276)
                      +++|++|.++.  .++.-+-.+ ...|++|+.|++++.
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~a-F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAA-FKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECCc--cccchhHHH-hhcCcccceEEcCCC
Confidence            57788888775  232211111 234788888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.11  E-value=2.8e-05  Score=60.57  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      ++++.|+++++ .++......+...+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++...... ...+++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKM-FLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSS-STTCTT
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHH-hcCCCC
Confidence            47888888884 5554222122345788888888876 4442211122 35778888888885 444211111 224678


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      |++|+++++ .++...             ...+..++.|+.++++.+.+.-.
T Consensus       104 L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          104 LKTLNLYDN-QISCVM-------------PGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSS-CCCEEC-------------TTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCC-cCCeeC-------------HHHhhcCCCCCEEEeCCCCccCc
Confidence            888888886 554311             01234566777787777765533

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.07  E-value=7.2e-05  Score=58.30  Aligned_cols=114  Identities=13%  Similarity=0.118  Sum_probs=71.4

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......  .  .+..+++|+.|+++++ .++...-     .....+++|++|+++++ .++...-..+
T Consensus        30 ~~~l~~L~L~~n~i~~ip--~--~~~~l~~L~~L~Ls~N-~i~~i~~-----~~f~~l~~L~~L~Ls~N-~l~~i~~~~f   98 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVP--K--ELSNYKHLTLIDLSNN-RISTLSN-----QSFSNMTQLLTLILSYN-RLRCIPPRTF   98 (193)
T ss_dssp             CTTCCEEECCSSCCCSCC--G--GGGGCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred             CCCCCEEECCCCcCchhH--H--HhhcccCCCEEECCCC-cCCEeCH-----hHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence            346778888876544211  1  2367899999999984 4443211     11234689999999994 6654322222


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHH
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS  183 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~  183 (276)
                       ..+++|+.|+|+++ .++.-. ......+++|+.|+++++...-|..
T Consensus        99 -~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           99 -DGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             -TTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             -CCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCCeecCCc
Confidence             34889999999986 454211 1122367899999999864433333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.03  E-value=0.00038  Score=53.12  Aligned_cols=110  Identities=13%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......   .-.+..+++|++|+++++ .++..     .......+++|+.|+++++ .++...-. .
T Consensus        27 ~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSQN-QIQSL-----PDGVFDKLTKLTILYLHEN-KLQSLPNG-V   95 (177)
T ss_dssp             CTTCSEEECCSSCCCCCC---TTTTTTCTTCSEEECCSS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCTT-T
T ss_pred             CCCCcEEEeCCCcccEeC---HHHhcCcccccEEECCCC-cceEe-----ChhHccCCCccCEEECCCC-CccccCHH-H
Confidence            356788888876543211   111357899999999985 44421     1111134689999999994 66542211 2


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN  178 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~  178 (276)
                      ...+++|+.|+++++ .++.- ...+...+++|++|+++++..
T Consensus        96 ~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           96 FDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             hhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCCe
Confidence            245889999999986 55421 112234688999999999743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.98  E-value=0.0016  Score=53.33  Aligned_cols=13  Identities=8%  Similarity=-0.041  Sum_probs=7.6

Q ss_pred             ccCCCccEEeccC
Q 023841           81 PRYRHVREINLEF   93 (276)
Q Consensus        81 ~~~~~L~~L~l~~   93 (276)
                      ++-+.-+.|+++.
T Consensus       124 ryn~~~~~LdLs~  136 (267)
T 3rw6_A          124 RYDGSQQALDLKG  136 (267)
T ss_dssp             TEETTTTEEECTT
T ss_pred             ccchhccccCHHH
Confidence            4445566677654

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=96.82  E-value=0.00044  Score=57.29  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCCCCCcHHHHHHHhcCCCHhhhH-HHhccCHHHHHHHhcCCCCccEE
Q 023841           16 TWSKETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI   62 (276)
Q Consensus        16 ~~~~~~~p~il~~if~~L~~~~l~-~~~~v~~~~~~~~~~~~~~~~~l   62 (276)
                      ....+| +|++..||++|+..++. +|++|||.|+ .++.++..|+..
T Consensus        50 ~~~~LP-~ell~~Il~~Lp~~~L~~r~~~VCk~Wr-~l~~~~~~w~~~   95 (297)
T 2e31_A           50 YLAELP-EPLLLRVLAELPATELVQACRLVCLRWK-ELVDGAPLWLLK   95 (297)
T ss_dssp             CTTSSC-HHHHHHHHHTSCHHHHHHTGGGTCHHHH-HHHTSHHHHHHH
T ss_pred             ChhhCC-HHHHHHHHHcCCHHHHHHHHHHHhHHHH-HHhcChHHHHHH
Confidence            334444 48999999999999999 9999999966 466666666643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.78  E-value=0.00033  Score=57.66  Aligned_cols=48  Identities=23%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCC
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE   66 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~   66 (276)
                      |.++| +|++.+||+||+.+|+.++++||+.| +.++.++.+|+.+-...
T Consensus         5 l~~LP-~ei~l~IlsfL~p~DL~~l~~vcr~W-r~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            5 LTRLP-IDVQLYILSFLSPHDLCQLGSTNHYW-NETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHSC-HHHHHHHHHTSCHHHHHHHHTTCHHH-HHHHTCHHHHHHHHHSS
T ss_pred             hHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhccchHHHHHHhcc
Confidence            34444 58999999999999999999999995 56788888888765554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.47  E-value=8.2e-06  Score=69.83  Aligned_cols=36  Identities=6%  Similarity=0.015  Sum_probs=20.5

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~   94 (276)
                      +...+.+++++.....-   ..-.+..+++|++|+++++
T Consensus        29 ~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N   64 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQN   64 (350)
T ss_dssp             CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECC
T ss_pred             CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCC
Confidence            34566777776543321   1112356778888888775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.42  E-value=0.00028  Score=53.66  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      +++|++|+|+++ .++.-. ......+++|++|+++++ .++.-.- .....+++|+.|+++++
T Consensus        53 l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           53 LTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             cccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence            556666666654 333111 111235667777777775 3431110 11234678888888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.42  E-value=0.0031  Score=51.62  Aligned_cols=84  Identities=21%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             CCCCccEEecCCCCCCCH-HHHHHHHhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCH------HH
Q 023841          112 SLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLD------KS  183 (276)
Q Consensus       112 ~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd------~~  183 (276)
                      .+++|+.|++++ +.++. .++..+...+++|+.|+|+++ .+++- .+..+. .+ +|++|+++++ .++.      ..
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y  242 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTY  242 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhH
Confidence            359999999999 57765 234445567999999999986 55543 333332 33 8999999996 4542      33


Q ss_pred             HHHHHhcCCCccEEecC
Q 023841          184 LQLIADNYQELESLNLT  200 (276)
Q Consensus       184 ~~~l~~~~~~L~~L~l~  200 (276)
                      ...+...+|+|+.||=.
T Consensus       243 ~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHCTTCCEESSC
T ss_pred             HHHHHHHCcccCeECCc
Confidence            34566679999999843

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.41  E-value=0.00029  Score=53.88  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      ++|+.|++++ +.++...-. ....+++|+.|+|+++ .++.-. ..+...+++|+.|+++++ .++.-.- .....+++
T Consensus        33 ~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNN-NQITKLEPG-VFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKS  106 (174)
T ss_dssp             TTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred             CCCcEEEeCC-CCccccCHH-HhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccC
Confidence            4556666655 233321111 1123566666666654 333210 111235677788887775 4431100 11234778


Q ss_pred             ccEEecCCC
Q 023841          194 LESLNLTRY  202 (276)
Q Consensus       194 L~~L~l~~c  202 (276)
                      |+.|+++++
T Consensus       107 L~~L~L~~N  115 (174)
T 2r9u_A          107 LTHIYLYNN  115 (174)
T ss_dssp             CSEEECCSS
T ss_pred             CCEEEeCCC
Confidence            888888886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.31  E-value=0.0005  Score=52.24  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (276)
Q Consensus        59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  138 (276)
                      |+.+++++.....      +...-.++|+.|+++++ .++...-.     ....+++|+.|++++ +.++...- .....
T Consensus        11 ~~~l~~s~n~l~~------ip~~~~~~l~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSLAS------VPTGIPTTTQVLYLYDN-QITKLEPG-----VFDRLTQLTRLDLDN-NQLTVLPA-GVFDK   76 (170)
T ss_dssp             TTEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCSEEECCS-SCCCCCCT-TTTTT
T ss_pred             CCEEEeCCCCcCc------cCccCCCCCcEEEcCCC-cCCccChh-----hhcCcccCCEEECCC-CCcCccCh-hhccC
Confidence            5667777654332      11123478999999984 44421111     113468999999999 46664221 12245


Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK  177 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~  177 (276)
                      +++|++|+|+++ .++.-. ......+++|+.|+++++.
T Consensus        77 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           77 LTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            899999999986 454211 1123468899999999963

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.23  E-value=0.0013  Score=57.57  Aligned_cols=48  Identities=21%  Similarity=0.172  Sum_probs=37.2

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecC
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLR   65 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~   65 (276)
                      ++.+| +|++.+||+||+..++.+|++||+.|++.+...+..|+.+-+.
T Consensus        15 ~~~lp-~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~   62 (464)
T 3v7d_B           15 ITSLP-FEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS   62 (464)
T ss_dssp             HHHSC-HHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHCC-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            34444 5899999999999999999999999776433337788876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.73  E-value=0.00086  Score=51.18  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (276)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~  162 (276)
                      .++|+.|+++++ .++...     ......+++|+.|++++ +.++.-.- .+...+++|+.|+|+++ .++.-. ....
T Consensus        32 ~~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~  101 (174)
T 2r9u_A           32 PTDKQRLWLNNN-QITKLE-----PGVFDHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAF  101 (174)
T ss_dssp             CTTCSEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred             CCCCcEEEeCCC-CccccC-----HHHhcCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHh
Confidence            478999999984 443211     11123468999999999 46654211 12245889999999986 454211 1123


Q ss_pred             HhCCCCcEEecCCCC
Q 023841          163 KNCKHIIDLNLSGCK  177 (276)
Q Consensus       163 ~~~~~L~~L~l~~c~  177 (276)
                      ..+++|++|+++++.
T Consensus       102 ~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCTTCSEEECCSSC
T ss_pred             ccccCCCEEEeCCCC
Confidence            368899999999963

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.44  E-value=0.0036  Score=54.50  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             HHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEE
Q 023841           25 VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI   62 (276)
Q Consensus        25 il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l   62 (276)
                      ++.+||+||+..++.++++||+.|+. ++.+...|+.+
T Consensus        22 ~~~~i~~~l~~~~l~~~~~v~~~w~~-~~~~~~~w~~~   58 (435)
T 1p22_A           22 IAENILSYLDAKSLCAAELVCKEWYR-VTSDGMLWKKL   58 (435)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHCHHHHH-HHHHTTHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHH-HhcChHHHHHH
Confidence            99999999999999999999999765 56667788865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.40  E-value=0.01  Score=51.74  Aligned_cols=46  Identities=13%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             CCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEE
Q 023841           15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI   62 (276)
Q Consensus        15 ~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l   62 (276)
                      ..++.+| +|++.+||+||+..++.++++||+.|+. ++.+...|+.+
T Consensus        17 d~~~~lp-~e~~~~i~~~l~~~~l~~~~~v~~~~~~-~~~~~~~w~~~   62 (445)
T 2ovr_B           17 DFISLLP-KELALYVLSFLEPKDLLQAAQTCRYWRI-LAEDNLLWREK   62 (445)
T ss_dssp             STTTSSC-HHHHHHHHTTSCHHHHHHHTTSCHHHHH-HHTCSHHHHHH
T ss_pred             ChhHHCC-HHHHHHHHHhCCHHHHHHHHHHhHHHHh-hcCchhHhhhh
Confidence            4455555 6899999999999999999999999764 55666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.81  E-value=0.0036  Score=53.02  Aligned_cols=63  Identities=17%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~  150 (276)
                      ..+++|+.|++++.+.++..     .......+++|+.|+|++ +.++...-.. ...+++|+.|+|+++
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred             CCCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCC
Confidence            45566777777642333221     111112346666666666 3444311111 123566666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.70  E-value=0.0028  Score=55.19  Aligned_cols=14  Identities=7%  Similarity=0.074  Sum_probs=9.7

Q ss_pred             cccCCCccEEeccC
Q 023841           80 IPRYRHVREINLEF   93 (276)
Q Consensus        80 ~~~~~~L~~L~l~~   93 (276)
                      ...|++|+.+++.+
T Consensus       176 F~~c~~L~~l~l~~  189 (401)
T 4fdw_A          176 FYYCYNLKKADLSK  189 (401)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             hhCcccCCeeecCC
Confidence            35677777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.67  E-value=0.00023  Score=60.78  Aligned_cols=14  Identities=7%  Similarity=-0.130  Sum_probs=9.3

Q ss_pred             CCCCccEEecCCcc
Q 023841           55 YPSLWLVIDLREMN   68 (276)
Q Consensus        55 ~~~~~~~l~l~~~~   68 (276)
                      ..+.++.++++++.
T Consensus        52 ~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           52 GFGDLEKIEISQND   65 (350)
T ss_dssp             TCTTCCEEEEECCT
T ss_pred             CCCCCCEEECcCCC
Confidence            34567778877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.16  E-value=0.0046  Score=52.32  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=49.8

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +.+|+.|++++.+.++...-.. ...+++|+.|+|+++ .++.-.-. ...++++|+.|+|+++ .++.-. ..++... 
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~-  103 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKTVQGL-  103 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STTTCSC-
T ss_pred             CCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHHcccC-
Confidence            4678999998634555422112 234788999999876 45432111 2246888999999886 444111 0112223 


Q ss_pred             CccEEecCCC
Q 023841          193 ELESLNLTRY  202 (276)
Q Consensus       193 ~L~~L~l~~c  202 (276)
                      .|+.|++.++
T Consensus       104 ~L~~l~l~~N  113 (347)
T 2ifg_A          104 SLQELVLSGN  113 (347)
T ss_dssp             CCCEEECCSS
T ss_pred             CceEEEeeCC
Confidence            3889999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.94  E-value=0.0021  Score=55.97  Aligned_cols=12  Identities=17%  Similarity=0.202  Sum_probs=7.3

Q ss_pred             CCCCccEEecCC
Q 023841          112 SLQDLESLNLNG  123 (276)
Q Consensus       112 ~~~~L~~L~l~~  123 (276)
                      .|++|+.++++.
T Consensus       178 ~c~~L~~l~l~~  189 (401)
T 4fdw_A          178 YCYNLKKADLSK  189 (401)
T ss_dssp             TCTTCCEEECTT
T ss_pred             CcccCCeeecCC
Confidence            346666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.46  E-value=0.042  Score=47.36  Aligned_cols=103  Identities=11%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC-CCcCHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQ  159 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~~l~~~~l~  159 (276)
                      ..|.+|+.+.+...  +.     .|...+-..+++|+.+.+..  .++.-+-. ....|.+|+.+.+... +.+.+..  
T Consensus       262 ~~c~~L~~i~lp~~--~~-----~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~v~~I~~~a--  329 (394)
T 4gt6_A          262 DSCAYLASVKMPDS--VV-----SIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPEGITQILDDA--  329 (394)
T ss_dssp             TTCSSCCEEECCTT--CC-----EECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTTCCEECTTT--
T ss_pred             eecccccEEecccc--cc-----eecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCCcccEehHhH--
Confidence            45566666666531  11     12222223356677777753  22211111 1234777777777531 2232222  


Q ss_pred             HHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCC
Q 023841          160 HLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTR  201 (276)
Q Consensus       160 ~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~  201 (276)
                        ..+|.+|+++.+... ..|.+..    +.+|++|+.+.+.+
T Consensus       330 --F~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          330 --FAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSG  366 (394)
T ss_dssp             --TTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESS
T ss_pred             --hhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECC
Confidence              236777777777532 2233332    23577777777766

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.03  E-value=0.056  Score=46.54  Aligned_cols=124  Identities=13%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC-CCCCHHHH
Q 023841           54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC-QKISDKGI  132 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c-~~l~~~~~  132 (276)
                      ..+..++.+.+......    +...+...|++|+.+.+...  ++     .|...+-..|.+|+++.+... ..+.+.  
T Consensus       262 ~~c~~L~~i~lp~~~~~----I~~~aF~~c~~L~~i~l~~~--i~-----~I~~~aF~~c~~L~~i~lp~~v~~I~~~--  328 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS----IGTGAFMNCPALQDIEFSSR--IT-----ELPESVFAGCISLKSIDIPEGITQILDD--  328 (394)
T ss_dssp             TTCSSCCEEECCTTCCE----ECTTTTTTCTTCCEEECCTT--CC-----EECTTTTTTCTTCCEEECCTTCCEECTT--
T ss_pred             eecccccEEecccccce----ecCcccccccccccccCCCc--cc-----ccCceeecCCCCcCEEEeCCcccEehHh--
Confidence            34555666665443211    11222467899999998742  22     223333345689999999752 223332  


Q ss_pred             HHHHhhCCCCCeEeccCC-CCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCC
Q 023841          133 EIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  201 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~  201 (276)
                        ....|.+|+++.+... ..+.+..    ..+|++|+.+.+.+.  .  ..... ...|..|+.+.+..
T Consensus       329 --aF~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~--~--~~~~~-~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          329 --AFAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS--R--SQWNA-ISTDSGLQNLPVAP  387 (394)
T ss_dssp             --TTTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC--H--HHHHT-CBCCCCC-------
T ss_pred             --HhhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc--e--eehhh-hhccCCCCEEEeCC
Confidence              2345999999999642 2343332    248999999999874  1  11222 23477788877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDL 171
           D++SL++  C+++SD     +     + +V  +     +T+   + +   ++    + +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60

Query: 172 NLSGCKNLLDKSLQLIAD----NYQELESLNL 199
           NL     L D  +  +         +++ L+L
Sbjct: 61  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK--- 163
           L  LQ  + + L+ C  +++   + ISS     P L   ++  N  + D+G+  +++   
Sbjct: 23  LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 80

Query: 164 -NCKHIIDLNLSGC 176
                I  L+L  C
Sbjct: 81  TPSCKIQKLSLQNC 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 109 CLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI 168
               L  L+ L+L+ C  I  + +  +    P LK   ++    V D  +Q L +   H+
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQLLKEALPHL 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.09
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.22
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.15
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.87
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.78
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.73
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.6
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.42
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.08
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.05
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.19
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	92.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.59

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.7e-22  Score=165.07  Aligned_cols=189  Identities=19%  Similarity=0.270  Sum_probs=145.8

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      .+..++.++++++... ...+..+. .+|++|++|++.+| .+++.....++.     +++|++|++++|..+++.++..
T Consensus        44 ~~~~L~~LdLs~~~i~-~~~l~~l~-~~c~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          44 SPFRVQHMDLSNSVIE-VSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCBCCCEEECTTCEEC-HHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHH
T ss_pred             cCCCCCEEECCCCccC-HHHHHHHH-HhCCCccccccccc-CCCcHHHHHHhc-----CCCCcCccccccccccccccch
Confidence            3446788888876543 33444444 68899999999986 688888887754     4889999999988899999888


Q ss_pred             HHhhCCCCCeEeccCCCCcCHHHHHH-HHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHH
Q 023841          135 ISSTCPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY  212 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~~~l~~-l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~  212 (276)
                      ++..||+|++|++++|..+++.++.. ++..+++|++|++++| ..+++.++..++.+||+|++|++++|..+++.++..
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence            88889999999999888888888764 4455678999999887 468888998888889999999999988888877664


Q ss_pred             HHhcCchhhHHHHHcCCCccceeccccc-CCCCCcceeEEEeeccCCCCceeeeecc
Q 023841          213 IWSNNILLMSEFIYHGIRFFQAVQINSS-NGGDHLAFAYIIETNTYKHGKEKHIIET  268 (276)
Q Consensus       213 l~~~~~~~l~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~~L~~l~~~~~  268 (276)
                      +             ..++.|+.+++.++ .++|. ++..+   ..+|+|+.|++.+|
T Consensus       196 l-------------~~~~~L~~L~L~~C~~i~~~-~l~~L---~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 F-------------FQLNYLQHLSLSRCYDIIPE-TLLEL---GEIPTLKTLQVFGI  235 (284)
T ss_dssp             G-------------GGCTTCCEEECTTCTTCCGG-GGGGG---GGCTTCCEEECTTS
T ss_pred             h-------------cccCcCCEEECCCCCCCChH-HHHHH---hcCCCCCEEeeeCC
Confidence            3             34677888888764 45555 55443   46888888888887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4e-22  Score=165.44  Aligned_cols=194  Identities=18%  Similarity=0.292  Sum_probs=162.0

Q ss_pred             ccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecC
Q 023841           43 LVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN  122 (276)
Q Consensus        43 ~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~  122 (276)
                      .+.......+...+++++.++++++. ..+..+..+  ..+++|++|++++|..+++.++..++..|    ++|++|+++
T Consensus        57 ~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~----~~L~~L~ls  129 (284)
T d2astb2          57 VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNLS  129 (284)
T ss_dssp             EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHC----TTCCEEECC
T ss_pred             ccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHH--hcCCCCcCccccccccccccccchhhHHH----Hhccccccc
Confidence            34555566678889999999999985 445555555  46899999999999999999999999987    999999999


Q ss_pred             CCCCCCHHHHHH-HHhhCCCCCeEeccCC-CCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecC
Q 023841          123 GCQKISDKGIEI-ISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT  200 (276)
Q Consensus       123 ~c~~l~~~~~~~-l~~~~~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~  200 (276)
                      +|..+++.++.. +...+++|+.|++++| ..+++.++..++.+||+|++|++++|..++|.++..+.+ +|+|++|+++
T Consensus       130 ~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~  208 (284)
T d2astb2         130 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLS  208 (284)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECT
T ss_pred             cccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-cCcCCEEECC
Confidence            999999998865 5566789999999987 469999999999999999999999999999999988875 9999999999


Q ss_pred             CCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCc
Q 023841          201 RYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGK  261 (276)
Q Consensus       201 ~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~  261 (276)
                      +|..+++.++..+             ..+++|+.+++..+ +.|. ++..+.  ..+|+|+
T Consensus       209 ~C~~i~~~~l~~L-------------~~~~~L~~L~l~~~-~~d~-~l~~l~--~~lp~L~  252 (284)
T d2astb2         209 RCYDIIPETLLEL-------------GEIPTLKTLQVFGI-VPDG-TLQLLK--EALPHLQ  252 (284)
T ss_dssp             TCTTCCGGGGGGG-------------GGCTTCCEEECTTS-SCTT-CHHHHH--HHSTTSE
T ss_pred             CCCCCChHHHHHH-------------hcCCCCCEEeeeCC-CCHH-HHHHHH--HhCcccc
Confidence            9999999887643             34678889988765 5555 555555  6677776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=2.8e-12  Score=108.09  Aligned_cols=203  Identities=10%  Similarity=0.081  Sum_probs=144.5

Q ss_pred             hcCCCCccEEecCCccCcch--hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEecC
Q 023841           53 VSYPSLWLVIDLREMNNAGN--RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNLN  122 (276)
Q Consensus        53 ~~~~~~~~~l~l~~~~~~~~--~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~--------~~~~~~L~~L~l~  122 (276)
                      ....+.++.++++.+.....  ..+... +..+++|++|+++++ .+++.+...++..+        ....+.|+.+.++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HhhCCCcccccccccccccccccchhhh-hcccccchheecccc-cccccccccccccccccccccccccCcccceeecc
Confidence            34566788889887754332  222222 256789999999885 57777666655433        1235789999998


Q ss_pred             CCCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHHHHHH----HHhCCCCcEEecCCCCCCCHHHHHHHH---hcCC
Q 023841          123 GCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQHL----VKNCKHIIDLNLSGCKNLLDKSLQLIA---DNYQ  192 (276)
Q Consensus       123 ~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~l~~l----~~~~~~L~~L~l~~c~~ltd~~~~~l~---~~~~  192 (276)
                      + +.+++.++..++   ..++.|++|++++| .++++++..+    ...+++|+.|+++++ .+++.+...++   ..++
T Consensus       167 ~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         167 R-NRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             S-SCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCT
T ss_pred             c-ccccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc-cccccccccccccccccc
Confidence            8 588887766554   45788999999987 7888876543    346789999999986 78888877775   3688


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEee--ccCCCCceeeeecce
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETI  269 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~l~~~~~~  269 (276)
                      +|++|++++| .+++.|+..++.       .+.....+.|+.++++++.+++. ++..+...  ..+++|+.|++.+..
T Consensus       244 ~L~~L~Ls~n-~i~~~g~~~l~~-------~l~~~~~~~L~~L~ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         244 NLRELGLNDC-LLSARGAAAVVD-------AFSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TCCEEECTTC-CCCHHHHHHHHH-------HHHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cchhhhhhcC-ccCchhhHHHHH-------HhhhccCCCCCEEECCCCcCChH-HHHHHHHHHHccCCCCCEEECCCCc
Confidence            9999999998 799999888763       11222346788999999988776 54444321  257899999987644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-11  Score=106.87  Aligned_cols=180  Identities=17%  Similarity=0.175  Sum_probs=121.5

Q ss_pred             hcCCCCccEEecCCccCcchhhH-HHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHH
Q 023841           53 VSYPSLWLVIDLREMNNAGNRLV-AALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG  131 (276)
Q Consensus        53 ~~~~~~~~~l~l~~~~~~~~~~l-~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~  131 (276)
                      ......+..++++++........ ....+...+.++.+++++ ..+++.++..+..........|+.+++++| .+++.+
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~-n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~  328 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAAC  328 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccccchhhcccccccccccccccccc-chhhhh
Confidence            44455677777776644322211 111124577888888887 478888888887766555577888888885 677766


Q ss_pred             HHHHH---hhCCCCCeEeccCCCCcCHHHHHHHHH----hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCC
Q 023841          132 IEIIS---STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTR  201 (276)
Q Consensus       132 ~~~l~---~~~~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~  201 (276)
                      +..++   ..+++|++|+|+++ .++++++..++.    ..+.|++|++++| .+++.++..++.   .+++|++|+|++
T Consensus       329 ~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         329 CSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN  406 (460)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             hhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCC
Confidence            55543   45678888888876 688887777654    3456888888887 788888777653   478888888888


Q ss_pred             CCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          202 YVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       202 c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      + .++++|+..++..        .......|+.+.+..+.+.+.
T Consensus       407 N-~i~~~g~~~l~~~--------l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         407 N-CLGDAGILQLVES--------VRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             S-SCCHHHHHHHHHH--------HTSTTCCCCEEECTTCCCCHH
T ss_pred             C-cCCHHHHHHHHHH--------HHhCCCccCEEECCCCCCCHH
Confidence            6 7888888776531        122334577777766665433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-11  Score=104.56  Aligned_cols=123  Identities=18%  Similarity=0.337  Sum_probs=84.1

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ++|++|+++. +.+++.++..+...+    ++++.|++++| .++++++..++   ..+++|++|+|+++ .+++.++..
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l----~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLL----QQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHH----TTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhC----CCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHH
Confidence            3567777764 677777777777766    77777777776 67777766554   45777777777765 677777777


Q ss_pred             HHHhC----CCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          161 LVKNC----KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       161 l~~~~----~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ++..+    ++|++|++++| .+++.++..++.   .+++|++|+++++ .+++.++..+..
T Consensus        75 l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~  134 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCE  134 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccc-cchhhhhhhhhh
Confidence            66543    36777777776 577766665543   4677777777776 577766665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=1.6e-10  Score=97.13  Aligned_cols=178  Identities=19%  Similarity=0.202  Sum_probs=133.9

Q ss_pred             cCCCCccEEecCCccCcchh--h----HHHh----ccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC
Q 023841           54 SYPSLWLVIDLREMNNAGNR--L----VAAL----SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG  123 (276)
Q Consensus        54 ~~~~~~~~l~l~~~~~~~~~--~----l~~l----~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~  123 (276)
                      ...+.++.++++++......  .    +...    .....+.|+.+.+++ ..+++.+...+..... .+++|+.|++++
T Consensus       118 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~l~~~l~-~~~~L~~L~L~~  195 (344)
T d2ca6a1         118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQ-SHRLLHTVKMVQ  195 (344)
T ss_dssp             HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHH-HCTTCCEEECCS
T ss_pred             cccccchheecccccccccccccccccccccccccccccCcccceeeccc-ccccccccccccchhh-hhhhhccccccc
Confidence            34668999999887543211  1    1111    114578999999998 5788888777766542 348999999999


Q ss_pred             CCCCCHHHHHHH----HhhCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHhc-----C
Q 023841          124 CQKISDKGIEII----SSTCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIADN-----Y  191 (276)
Q Consensus       124 c~~l~~~~~~~l----~~~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~~-----~  191 (276)
                      | .++++++..+    ...+++|+.|+++++ .+++.+...++   ..+++|++|++++| .+++.++..++..     .
T Consensus       196 n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~  272 (344)
T d2ca6a1         196 N-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLEN  272 (344)
T ss_dssp             S-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSS
T ss_pred             c-cccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccC
Confidence            5 8999876543    346889999999987 68888877665   57889999999998 7999999888752     4


Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841          192 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  245 (276)
Q Consensus       192 ~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~  245 (276)
                      +.|++|+++++ .++++++..+..        .....++.|+.++++++.+.+.
T Consensus       273 ~~L~~L~ls~N-~i~~~~~~~l~~--------~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         273 IGLQTLRLQYN-EIELDAVRTLKT--------VIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCCCEEECCSS-CCBHHHHHHHHH--------HHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCCEEECCCC-cCChHHHHHHHH--------HHHccCCCCCEEECCCCcCCCc
Confidence            67999999997 799999888763        2223567889999988887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=5.5e-10  Score=83.87  Aligned_cols=125  Identities=16%  Similarity=0.162  Sum_probs=102.6

Q ss_pred             hHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCC
Q 023841           74 LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWN  150 (276)
Q Consensus        74 ~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~  150 (276)
                      .+..+. ...+.|++|++++...+++.++..++.... .+++|++|++++| .++++++.+++.   ..+.++.+++++|
T Consensus         8 ~l~~~~-~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           8 TLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHH-hcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence            344444 678999999999877899999999999774 3589999999996 999998887654   4678999999987


Q ss_pred             CCcCHHHHHHHHH---hCCCCcEEecCCC-CCCCHHHHHHHHh---cCCCccEEecCCC
Q 023841          151 VRVTDIGIQHLVK---NCKHIIDLNLSGC-KNLLDKSLQLIAD---NYQELESLNLTRY  202 (276)
Q Consensus       151 ~~l~~~~l~~l~~---~~~~L~~L~l~~c-~~ltd~~~~~l~~---~~~~L~~L~l~~c  202 (276)
                       .++++++..++.   .+++|+.++|..+ ..+++++...++.   .++.|++|++.+.
T Consensus        85 -~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          85 -FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             -CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             -cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             899999887764   4678998888755 3789988777765   6899999999885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=3.7e-10  Score=84.96  Aligned_cols=126  Identities=15%  Similarity=0.210  Sum_probs=101.9

Q ss_pred             hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccC
Q 023841           73 RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW  149 (276)
Q Consensus        73 ~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~  149 (276)
                      +.++.+. ...+.|++|+++++..+++.++..++.... ..++|++|++++| .+++.++..++.   ..+.|++|++++
T Consensus         5 ~~l~~l~-~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           5 SCINRLR-EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             HHHHHHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHH-hCCCCCcEEEeCCCCCCCHHHHHHHHHHHh-hCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeeh
Confidence            3444554 678999999999877899999999988774 3578999999995 899988776654   578899999999


Q ss_pred             CCCcCHHHHHHHHHhC---CCCcEEecCCC--CCCCHHHHHHHHh---cCCCccEEecCCC
Q 023841          150 NVRVTDIGIQHLVKNC---KHIIDLNLSGC--KNLLDKSLQLIAD---NYQELESLNLTRY  202 (276)
Q Consensus       150 ~~~l~~~~l~~l~~~~---~~L~~L~l~~c--~~ltd~~~~~l~~---~~~~L~~L~l~~c  202 (276)
                      | .++++++..++..+   +.|++|+++++  ..+++++...++.   ..+.|+.|++++.
T Consensus        82 n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          82 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             h-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            8 89999998887655   57999999876  3577777666554   5899999999885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=1.2e-09  Score=82.00  Aligned_cols=127  Identities=14%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             HHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEec
Q 023841          100 RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNL  173 (276)
Q Consensus       100 ~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l  173 (276)
                      +.+..+...    .++|++|+++++..++++++..++.   ..+.|++|++++| .+++.++..++   +..+.|++|++
T Consensus         5 ~~l~~l~~n----~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L   79 (167)
T d1pgva_           5 SCINRLRED----DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNV   79 (167)
T ss_dssp             HHHHHHHTT----CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHhC----CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceee
Confidence            445666554    4999999999877899999887765   4567999999987 79998876665   45789999999


Q ss_pred             CCCCCCCHHHHHHHHhc---CCCccEEecCCC--CCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          174 SGCKNLLDKSLQLIADN---YQELESLNLTRY--VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       174 ~~c~~ltd~~~~~l~~~---~~~L~~L~l~~c--~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      ++| .+++.|+..++..   .+.|++|+++++  ..+++++...++.         .....+.|+.+++++..
T Consensus        80 ~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~---------~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          80 ESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM---------AIEENESLLRVGISFAS  142 (167)
T ss_dssp             CSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH---------HHHHCSSCCEEECCCCC
T ss_pred             ehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH---------HHHhCCCccEeeCcCCC
Confidence            997 8999999888764   577999999875  2567777776653         23345666677665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.09  E-value=3.4e-09  Score=79.41  Aligned_cols=127  Identities=17%  Similarity=0.121  Sum_probs=98.7

Q ss_pred             HHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEec
Q 023841          100 RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNL  173 (276)
Q Consensus       100 ~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l  173 (276)
                      ..+..+..    +.++|++|+++++..+++.++..++.   .+++|++|++++| .+++.++..++   ...+.++.+++
T Consensus         7 ~~l~~~~~----~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l   81 (166)
T d1io0a_           7 ETLKRIQN----NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNV   81 (166)
T ss_dssp             HHHHHHHT----TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHh----cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhh
Confidence            34444444    45999999999877899999888776   5678999999998 89999887765   35689999999


Q ss_pred             CCCCCCCHHHHHHHHh---cCCCccEEecCCC-CCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          174 SGCKNLLDKSLQLIAD---NYQELESLNLTRY-VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       174 ~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c-~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                      ++| .++++++..++.   ..++|+.++|..+ ..+++++...++.         ....++.|+.+++++..
T Consensus        82 ~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~---------~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          82 ESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN---------MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH---------HHHHCSSCCEEECCCSS
T ss_pred             ccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH---------HHHhCCCcCEEeCcCCC
Confidence            997 899999988875   4688998777654 3788999888753         23456778888776554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=8.9e-09  Score=57.74  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCc
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW   59 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~   59 (276)
                      |+.+| +|++.+||+||+..|+.++++|||.|++ ++.++..|
T Consensus         1 f~~LP-~eil~~If~~L~~~dl~~~~~Vcr~w~~-l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYR-LASDESLW   41 (41)
T ss_dssp             CCSSC-HHHHHHHHTTSCGGGHHHHHTTCHHHHH-HHTCGGGC
T ss_pred             CCcCC-HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCcccC
Confidence            56656 6899999999999999999999999765 55665544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=7.1e-08  Score=74.12  Aligned_cols=160  Identities=15%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ..++.++++++...+-..     +..+++|++|+++++ .+++..  .+     ..+++|++|+++++ .+....  . .
T Consensus        40 ~~l~~L~l~~~~i~~l~~-----l~~l~nL~~L~Ls~N-~l~~~~--~l-----~~l~~L~~L~l~~n-~~~~~~--~-l  102 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN-QLTDIT--PL-----KNLTKLVDILMNNN-QIADIT--P-L  102 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCG--GG-----TTCTTCCEEECCSS-CCCCCG--G-G
T ss_pred             cCCCEEECCCCCCCCccc-----cccCCCcCcCccccc-cccCcc--cc-----cCCccccccccccc-cccccc--c-c
Confidence            356778888766443222     357899999999985 554421  11     34689999999986 433321  2 2


Q ss_pred             hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  216 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~  216 (276)
                      ..+++|+.|+++++.......    ...+++|+.|+++++ .++.  +..+ ..+++|+.|++++| .+++-  .     
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~--~~~l-~~~~~L~~L~l~~n-~l~~l--~-----  166 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSN-TISD--ISAL-SGLTSLQQLNFSSN-QVTDL--K-----  166 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCC--CGGG-TTCTTCSEEECCSS-CCCCC--G-----
T ss_pred             ccccccccccccccccccccc----cchhhhhHHhhhhhh-hhcc--cccc-cccccccccccccc-cccCC--c-----
Confidence            458899999998775443222    236889999999987 4442  1122 35889999999987 56541  0     


Q ss_pred             CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCcee
Q 023841          217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEK  263 (276)
Q Consensus       217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l  263 (276)
                              .+.++++|+.++++++.+++...    +  ..+++|++|
T Consensus       167 --------~l~~l~~L~~L~ls~N~i~~i~~----l--~~L~~L~~L  199 (199)
T d2omxa2         167 --------PLANLTTLERLDISSNKVSDISV----L--AKLTNLESL  199 (199)
T ss_dssp             --------GGTTCTTCCEEECCSSCCCCCGG----G--GGCTTCSEE
T ss_pred             --------cccCCCCCCEEECCCCCCCCCcc----c--cCCCCCCcC
Confidence                    25678889999998888776422    2  567888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=3.3e-08  Score=76.03  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=104.9

Q ss_pred             cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (276)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l  161 (276)
                      .++++++|+++++ .+++  +..+ +    .+++|++|+++++ .+++..  . ...+++|+.|+++++....-.   .+
T Consensus        38 ~l~~l~~L~l~~~-~i~~--l~~l-~----~l~nL~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~---~l  102 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKS--IDGV-E----YLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNNQIADIT---PL  102 (199)
T ss_dssp             HHTTCCEEECTTS-CCCC--CTTG-G----GCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCG---GG
T ss_pred             HhcCCCEEECCCC-CCCC--cccc-c----cCCCcCcCccccc-cccCcc--c-ccCCccccccccccccccccc---cc
Confidence            4578999999985 4443  1122 2    2599999999995 666522  2 346899999999987433222   23


Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  241 (276)
Q Consensus       162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~  241 (276)
                       .++++|+.|+++++......+    ...+++|+.|+++++ .++..  .             .+.+++.++.+++.++.
T Consensus       103 -~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~--~-------------~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         103 -ANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSN-TISDI--S-------------ALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             -TTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCCC--G-------------GGTTCTTCSEEECCSSC
T ss_pred             -ccccccccccccccccccccc----cchhhhhHHhhhhhh-hhccc--c-------------ccccccccccccccccc
Confidence             378999999999985444322    335899999999997 45331  1             24678889999998888


Q ss_pred             CCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          242 GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      +.+..+    +  .++++|+.|++.++ ++.|
T Consensus       162 l~~l~~----l--~~l~~L~~L~ls~N-~i~~  186 (199)
T d2omxa2         162 VTDLKP----L--ANLTTLERLDISSN-KVSD  186 (199)
T ss_dssp             CCCCGG----G--TTCTTCCEEECCSS-CCCC
T ss_pred             ccCCcc----c--cCCCCCCEEECCCC-CCCC
Confidence            766533    2  68899999999988 4554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=3.5e-08  Score=77.48  Aligned_cols=166  Identities=10%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.+++.++...+-   ..  +.++++|++|+++++ .+++..  .+     ..+++++.++++++ .+++  +..+. 
T Consensus        42 ~L~~L~l~~~~i~~l---~~--l~~l~~L~~L~ls~n-~i~~~~--~l-----~~l~~l~~l~~~~n-~~~~--i~~l~-  104 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI---EG--VQYLNNLIGLELKDN-QITDLA--PL-----KNLTKITELELSGN-PLKN--VSAIA-  104 (227)
T ss_dssp             TCCEEECTTSCCCCC---TT--GGGCTTCCEEECCSS-CCCCCG--GG-----TTCCSCCEEECCSC-CCSC--CGGGT-
T ss_pred             CcCEEECCCCCCCcc---hh--HhcCCCCcEeecCCc-eeeccc--cc-----cccccccccccccc-cccc--ccccc-
Confidence            456667766653321   11  346777777777774 333211  11     23467777777764 3332  22222 


Q ss_pred             hCCCCCeEeccCCCCcCHHHHH------------------HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEec
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQ------------------HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL  199 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~------------------~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l  199 (276)
                      .+++|+.+.++++.......+.                  .-...+++|++|++++| .+++..  . ..++++|++|++
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~L  180 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT--P-LANLSKLTTLKA  180 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEEC
T ss_pred             ccccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccch--h-hcccccceeccc
Confidence            3666777666654321111100                  00134566777777665 333211  1 234677777777


Q ss_pred             CCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeee
Q 023841          200 TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHII  266 (276)
Q Consensus       200 ~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~  266 (276)
                      ++| .+++-  .             .+.++++|+.++++++.+++..+    +  ..+++|+.|++.
T Consensus       181 s~n-~l~~l--~-------------~l~~l~~L~~L~Ls~N~lt~i~~----l--~~l~~L~~L~ls  225 (227)
T d1h6ua2         181 DDN-KISDI--S-------------PLASLPNLIEVHLKNNQISDVSP----L--ANTSNLFIVTLT  225 (227)
T ss_dssp             CSS-CCCCC--G-------------GGGGCTTCCEEECTTSCCCBCGG----G--TTCTTCCEEEEE
T ss_pred             CCC-ccCCC--h-------------hhcCCCCCCEEECcCCcCCCCcc----c--ccCCCCCEEEee
Confidence            775 45431  0             23456677777777766654422    2  567777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=6e-08  Score=75.23  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      .++.++++.+....-..     +..+++|++|+++++ .+++-.  .+     ..+++|+.|+++++ .+++  +.. ..
T Consensus        47 ~L~~L~l~~~~i~~l~~-----l~~l~~L~~L~L~~n-~i~~l~--~~-----~~l~~L~~L~l~~n-~i~~--l~~-l~  109 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGN-KLTDIK--PL-----ANLKNLGWLFLDEN-KVKD--LSS-LK  109 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCG--GG-----TTCTTCCEEECCSS-CCCC--GGG-GT
T ss_pred             CccEEECcCCCCCCchh-----HhhCCCCCEEeCCCc-cccCcc--cc-----ccCccccccccccc-cccc--ccc-cc
Confidence            46778888765443222     367999999999985 555421  11     24689999999995 7765  223 34


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  217 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~  217 (276)
                      .+++|+.|+++++.. ++  +..+ ..+++++.++++++ .+++..   ....+++|+.++++++ .+++-  .      
T Consensus       110 ~l~~L~~L~l~~~~~-~~--~~~l-~~l~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n-~l~~i--~------  172 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGI-SD--INGL-VHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDN-QISDI--V------  172 (210)
T ss_dssp             TCTTCCEEECTTSCC-CC--CGGG-GGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCCC--G------
T ss_pred             ccccccccccccccc-cc--cccc-cccccccccccccc-cccccc---cccccccccccccccc-ccccc--c------
Confidence            489999999998743 22  2223 37889999999986 555422   1335899999999997 56541  1      


Q ss_pred             chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841          218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                             .+.++++|+.++++++.+++..+    +  .++++|+.|++.+
T Consensus       173 -------~l~~l~~L~~L~Ls~N~i~~l~~----l--~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -------PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFS  209 (210)
T ss_dssp             -------GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEEEEE
T ss_pred             -------cccCCCCCCEEECCCCCCCCChh----h--cCCCCCCEEEccC
Confidence                   25678899999999988865422    2  6889999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.7e-09  Score=78.88  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      .....+++|+++++ .++.-  ..+..    .+++|+.|++++ +.++.-  .. ...+++|++|++++| .++.-. ..
T Consensus        15 ~n~~~lr~L~L~~n-~I~~i--~~~~~----~l~~L~~L~Ls~-N~i~~l--~~-~~~l~~L~~L~ls~N-~i~~l~-~~   81 (162)
T d1a9na_          15 TNAVRDRELDLRGY-KIPVI--ENLGA----TLDQFDAIDFSD-NEIRKL--DG-FPLLRRLKTLLVNNN-RICRIG-EG   81 (162)
T ss_dssp             ECTTSCEEEECTTS-CCCSC--CCGGG----GTTCCSEEECCS-SCCCEE--CC-CCCCSSCCEEECCSS-CCCEEC-SC
T ss_pred             cCcCcCcEEECCCC-CCCcc--Ccccc----ccccCCEEECCC-CCCCcc--CC-cccCcchhhhhcccc-cccCCC-cc
Confidence            45667888888874 44321  11222    247888888888 466542  12 234778888888876 343211 12


Q ss_pred             HHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCC
Q 023841          161 LVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      +...+++|++|+++++ .+++ ..+..+ ..+|+|++|++++|
T Consensus        82 ~~~~l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N  122 (162)
T d1a9na_          82 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN  122 (162)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS
T ss_pred             ccccccccccceeccc-ccccccccccc-ccccccchhhcCCC
Confidence            2346778888888876 4443 233333 34788888888886

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=1.7e-07  Score=72.52  Aligned_cols=147  Identities=17%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (276)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~  162 (276)
                      +.+|++|+++++ .+++-  ..+ +.    +++|++|+++++ .+++-  ..+ ..+++|+.|+++++ .+++  +..+ 
T Consensus        45 L~~L~~L~l~~~-~i~~l--~~l-~~----l~~L~~L~L~~n-~i~~l--~~~-~~l~~L~~L~l~~n-~i~~--l~~l-  108 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSV--QGI-QY----LPNVTKLFLNGN-KLTDI--KPL-ANLKNLGWLFLDEN-KVKD--LSSL-  108 (210)
T ss_dssp             HHTCCEEECTTS-CCCCC--TTG-GG----CTTCCEEECCSS-CCCCC--GGG-TTCTTCCEEECCSS-CCCC--GGGG-
T ss_pred             hcCccEEECcCC-CCCCc--hhH-hh----CCCCCEEeCCCc-cccCc--ccc-ccCccccccccccc-cccc--cccc-
Confidence            457889999885 43321  112 22    499999999995 66652  223 45899999999987 5654  2333 


Q ss_pred             HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCC
Q 023841          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG  242 (276)
Q Consensus       163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~  242 (276)
                      ..+++|+.|+++++....-.   .+ ..+++++.++++++ .+++..               ....++.|+.+.++.+.+
T Consensus       109 ~~l~~L~~L~l~~~~~~~~~---~l-~~l~~l~~l~~~~n-~l~~~~---------------~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGISDIN---GL-VHLPQLESLYLGNN-KITDIT---------------VLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             TTCTTCCEEECTTSCCCCCG---GG-GGCTTCCEEECCSS-CCCCCG---------------GGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccccc---cc-cccccccccccccc-cccccc---------------cccccccccccccccccc
Confidence            36899999999997432211   22 35889999999986 565421               234578899999988887


Q ss_pred             CCCcceeEEEeeccCCCCceeeeecceecc
Q 023841          243 GDHLAFAYIIETNTYKHGKEKHIIETIKTG  272 (276)
Q Consensus       243 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~  272 (276)
                      .+..+    +  ..+++|++|++.++ +++
T Consensus       169 ~~i~~----l--~~l~~L~~L~Ls~N-~i~  191 (210)
T d1h6ta2         169 SDIVP----L--AGLTKLQNLYLSKN-HIS  191 (210)
T ss_dssp             CCCGG----G--TTCTTCCEEECCSS-CCC
T ss_pred             ccccc----c--cCCCCCCEEECCCC-CCC
Confidence            65422    2  67899999999987 444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=2.2e-07  Score=72.67  Aligned_cols=154  Identities=11%  Similarity=0.122  Sum_probs=97.5

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+.+|+.|++.++ .+++  +..+.     .+++|+.|+++++ .+++.  .. ...+++|+.++++++ .+++  +..
T Consensus        38 ~~l~~L~~L~l~~~-~i~~--l~~l~-----~l~~L~~L~ls~n-~i~~~--~~-l~~l~~l~~l~~~~n-~~~~--i~~  102 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTT--IEGVQ-----YLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGN-PLKN--VSA  102 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCC--CTTGG-----GCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSC-CCSC--CGG
T ss_pred             HHcCCcCEEECCCC-CCCc--chhHh-----cCCCCcEeecCCc-eeecc--cc-ccccccccccccccc-cccc--ccc
Confidence            34578999999986 4543  22232     2599999999995 56542  12 355899999999986 3442  233


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHH------------------HhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhH
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLI------------------ADNYQELESLNLTRYVNMILLGLFYIWSNNILLMS  222 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l------------------~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~  222 (276)
                      ++ .+++|+.+.++++.......+...                  ...+++|+.|++++| .+++               
T Consensus       103 l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~---------------  165 (227)
T d1h6ua2         103 IA-GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSD---------------  165 (227)
T ss_dssp             GT-TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCC---------------
T ss_pred             cc-ccccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-cccc---------------
Confidence            44 788999999988743321111000                  112444555555444 2221               


Q ss_pred             HHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841          223 EFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  273 (276)
Q Consensus       223 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (276)
                      ...+.+++.|+.++++++.+.+..+    +  ..+|+|++|++.+| ++++
T Consensus       166 ~~~l~~l~~L~~L~Ls~n~l~~l~~----l--~~l~~L~~L~Ls~N-~lt~  209 (227)
T d1h6ua2         166 LTPLANLSKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNN-QISD  209 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTS-CCCB
T ss_pred             chhhcccccceecccCCCccCCChh----h--cCCCCCCEEECcCC-cCCC
Confidence            1135678899999998888766532    2  68899999999998 4554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.27  E-value=9.1e-07  Score=74.15  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=74.1

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|++|+++++ .++..  .. ...++.++.+.++.+ .+++  +.. ...++++++|+++++ .+++-  .. ...+|
T Consensus       262 ~~~L~~L~l~~~-~l~~~--~~-~~~~~~l~~l~~~~n-~l~~--~~~-~~~~~~l~~L~ls~n-~l~~l--~~-l~~l~  329 (384)
T d2omza2         262 LTKLTELKLGAN-QISNI--SP-LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISDI--SP-VSSLT  329 (384)
T ss_dssp             CTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSCC--GG-GGGCT
T ss_pred             cccCCEeeccCc-ccCCC--Cc-ccccccccccccccc-cccc--ccc-cchhcccCeEECCCC-CCCCC--cc-cccCC
Confidence            355666666553 33221  11 123555555655544 2322  111 346788888888886 55532  12 34688


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  267 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~  267 (276)
                      +|++|++++| .+++-  .             .+.++++|+.++++++.+++..+    +  ..+++|+.|++++
T Consensus       330 ~L~~L~L~~n-~l~~l--~-------------~l~~l~~L~~L~l~~N~l~~l~~----l--~~l~~L~~L~L~~  382 (384)
T d2omza2         330 KLQRLFFANN-KVSDV--S-------------SLANLTNINWLSAGHNQISDLTP----L--ANLTRITQLGLND  382 (384)
T ss_dssp             TCCEEECCSS-CCCCC--G-------------GGGGCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEECCC
T ss_pred             CCCEEECCCC-CCCCC--h-------------hHcCCCCCCEEECCCCcCCCChh----h--ccCCCCCEeeCCC
Confidence            9999999997 66641  1             24568889999998888765533    2  6788999998875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=9.2e-08  Score=71.04  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841           55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI  134 (276)
Q Consensus        55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  134 (276)
                      .+..+++++++++....-..   +. ..+++|++|+++++ .++.-  ..     ...+++|++|+++++ .++...- .
T Consensus        16 n~~~lr~L~L~~n~I~~i~~---~~-~~l~~L~~L~Ls~N-~i~~l--~~-----~~~l~~L~~L~ls~N-~i~~l~~-~   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIEN---LG-ATLDQFDAIDFSDN-EIRKL--DG-----FPLLRRLKTLLVNNN-RICRIGE-G   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCC---GG-GGTTCCSEEECCSS-CCCEE--CC-----CCCCSSCCEEECCSS-CCCEECS-C
T ss_pred             CcCcCcEEECCCCCCCccCc---cc-cccccCCEEECCCC-CCCcc--CC-----cccCcchhhhhcccc-cccCCCc-c
Confidence            34567889998876543322   22 46789999999984 55431  11     234689999999995 6654221 2


Q ss_pred             HHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCH-HHH-HHHHhcCCCccEEecCCCCCCCHH
Q 023841          135 ISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD-KSL-QLIADNYQELESLNLTRYVNMILL  208 (276)
Q Consensus       135 l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~-~~l~~~~~~L~~L~l~~c~~it~~  208 (276)
                      +...+++|++|+++++ .+++ ..+..+ ..+++|++|++++| .+++ ... ..+...+|+|+.||-.   .++.+
T Consensus        82 ~~~~l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~---~i~~~  152 (162)
T d1a9na_          82 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ---KVKLK  152 (162)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE---ECCHH
T ss_pred             ccccccccccceeccc-ccccccccccc-ccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC---CCCHH
Confidence            3345899999999987 4543 233444 37899999999997 4442 221 2344568999998843   45554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.22  E-value=5e-08  Score=75.02  Aligned_cols=136  Identities=15%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .+++-  ..+. .    +++|+.|+++++ .+++  +..+...+++|+.|+++++ .++.  +..
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i--~~l~-~----l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N-~i~~--l~~  110 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKI--SSLS-G----MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG  110 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCC--CCHH-H----HTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEE-ECCC--HHH
T ss_pred             hcccccceeECccc-CCCCc--cccc-C----CccccChhhccc-cccc--ccccccccccccccccccc-cccc--ccc
Confidence            56889999999974 44432  2222 2    389999999985 5554  1223333567999999986 5664  233


Q ss_pred             HHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI  237 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l  237 (276)
                      +. .+++|+.|+++++ .+++- .+..+. .+|+|+.|++++++ ++......   ......+......+++|+.|+-
T Consensus       111 ~~-~l~~L~~L~L~~N-~i~~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~~---~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         111 IE-KLVNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGNP-LYNDYKEN---NATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HH-HHHHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSSH-HHHHHCTT---TTHHHHHHHHHHHCSSCCEESS
T ss_pred             cc-ccccccccccccc-hhcccccccccc-CCCccceeecCCCc-cccCcccc---cchhhHHHHHHHHCCCcCEeCC
Confidence            33 6788999999996 66643 344443 58999999999973 32211000   0011112334556777777653

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=1.9e-07  Score=63.34  Aligned_cols=49  Identities=22%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCC
Q 023841           17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE   66 (276)
Q Consensus        17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~   66 (276)
                      ++++| +|++.+||+||+..|+.++++||+.|.+.+..++..|+.+.+..
T Consensus         6 ~~~LP-~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           6 ITSLP-FEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHHSC-HHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhhCC-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            44555 69999999999999999999999998876667788898876654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.2e-07  Score=70.82  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      ++.++.+++++.......   .-.+..+++|++|+++++ .++.-  ..     .+.+++|+.|+++++ .++..  ...
T Consensus        30 p~~l~~L~Ls~N~i~~l~---~~~f~~l~~L~~L~L~~N-~l~~l--~~-----~~~l~~L~~L~Ls~N-~l~~~--~~~   95 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFS---LATLMPYTRLTQLNLDRA-ELTKL--QV-----DGTLPVLGTLDLSHN-QLQSL--PLL   95 (266)
T ss_dssp             CTTCCEEECTTSCCSEEE---GGGGTTCTTCCEEECTTS-CCCEE--EC-----CSCCTTCCEEECCSS-CCSSC--CCC
T ss_pred             CcCCCEEECcCCcCCCcC---HHHhhccccccccccccc-ccccc--cc-----ccccccccccccccc-ccccc--ccc
Confidence            456778888876543211   111356788889988884 55421  11     134688889998884 55431  223


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS  215 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~  215 (276)
                      ...+++|+.|+++++. +..-. ......+++++.|+++++ .++.-.- .....+++|+.++++++ +++...      
T Consensus        96 ~~~l~~L~~L~l~~~~-~~~~~-~~~~~~l~~l~~L~l~~n-~l~~l~~-~~~~~l~~l~~l~l~~N-~l~~~~------  164 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP------  164 (266)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC------
T ss_pred             cccccccccccccccc-cceee-cccccccccccccccccc-ccceecc-ccccccccchhcccccc-cccccC------
Confidence            4457888888888653 22111 111235678888888876 3331110 12234678888988886 554321      


Q ss_pred             cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                             .-.+.++++|+.|+++.+.+..- .- .+   ...++|+.|.+.+.+
T Consensus       165 -------~~~~~~l~~L~~L~Ls~N~L~~l-p~-~~---~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         165 -------AGLLNGLENLDTLLLQENSLYTI-PK-GF---FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCCCC-CT-TT---TTTCCCSEEECCSCC
T ss_pred             -------ccccccccccceeecccCCCccc-Ch-hH---CCCCCCCEEEecCCC
Confidence                   11356778899999988876633 11 11   357888888888654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=1.7e-05  Score=66.07  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++ .+++..  .+     ..+++|+.|+++++ .+++..  . ...+++|++|+++++ .++.  +..
T Consensus       216 ~~~~~L~~L~l~~n-~l~~~~--~l-----~~l~~L~~L~l~~n-~l~~~~--~-~~~~~~L~~L~l~~~-~l~~--~~~  280 (384)
T d2omza2         216 GILTNLDELSLNGN-QLKDIG--TL-----ASLTNLTDLDLANN-QISNLA--P-LSGLTKLTELKLGAN-QISN--ISP  280 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCG--GG-----GGCTTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSS-CCCC--CGG
T ss_pred             cccCCCCEEECCCC-CCCCcc--hh-----hcccccchhccccC-ccCCCC--c-ccccccCCEeeccCc-ccCC--CCc
Confidence            34566777777764 333311  11     12467777777774 444321  1 234677777777654 3321  111


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                       ...++.++.+.+..+ .+++  +.. ...+++++.|+++++ ++++..               .+..+++|+.+++.++
T Consensus       281 -~~~~~~l~~l~~~~n-~l~~--~~~-~~~~~~l~~L~ls~n-~l~~l~---------------~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         281 -LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISDIS---------------PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             -GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSCCG---------------GGGGCTTCCEEECCSS
T ss_pred             -ccccccccccccccc-cccc--ccc-cchhcccCeEECCCC-CCCCCc---------------ccccCCCCCEEECCCC
Confidence             225667777777765 3332  111 235788888888886 555411               2456889999999998


Q ss_pred             CCCCCcceeEEEeeccCCCCceeeeecce
Q 023841          241 NGGDHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .+++...    +  ..+|+|++|+++++.
T Consensus       340 ~l~~l~~----l--~~l~~L~~L~l~~N~  362 (384)
T d2omza2         340 KVSDVSS----L--ANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCCCCGG----G--GGCTTCCEEECCSSC
T ss_pred             CCCCChh----H--cCCCCCCEEECCCCc
Confidence            8876522    2  679999999998774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=2e-06  Score=60.53  Aligned_cols=12  Identities=17%  Similarity=0.282  Sum_probs=6.7

Q ss_pred             cCCCccEEeccC
Q 023841           82 RYRHVREINLEF   93 (276)
Q Consensus        82 ~~~~L~~L~l~~   93 (276)
                      .+++|++|++++
T Consensus        18 ~l~~L~~L~ls~   29 (124)
T d1dcea3          18 QLLLVTHLDLSH   29 (124)
T ss_dssp             GGTTCCEEECCS
T ss_pred             cCCCCCEEECCC
Confidence            445555555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.2e-07  Score=72.95  Aligned_cols=135  Identities=11%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|+.|+++++ .+..... .....+++|+.++++++ .++.-. ......+++|++|+++++ .++.-.- ..+..++
T Consensus       104 l~~L~~L~l~~n-~~~~~~~-~~~~~~~~L~~l~l~~N-~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~-~~f~~l~  177 (284)
T d1ozna_         104 LGRLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLH  177 (284)
T ss_dssp             CTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred             cccCCEEecCCc-ccccccc-cccchhcccchhhhccc-cccccC-hhHhccccchhhcccccC-cccccch-hhhcccc
Confidence            456666666664 3222111 11222455666666654 332211 111234566777777665 3331110 1122466


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  271 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~  271 (276)
                      +|+.++++++ .++...             ...+.++++|+.++++.+.+.... . ..+  ..+++|+.+++.+.+-.
T Consensus       178 ~L~~l~l~~N-~l~~i~-------------~~~f~~l~~L~~L~l~~N~i~~~~-~-~~~--~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         178 SLDRLLLHQN-RVAHVH-------------PHAFRDLGRLMTLYLFANNLSALP-T-EAL--APLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSS-CCCEEC-------------TTTTTTCTTCCEEECCSSCCSCCC-H-HHH--TTCTTCCEEECCSSCEE
T ss_pred             ccchhhhhhc-cccccC-------------hhHhhhhhhccccccccccccccc-c-ccc--ccccccCEEEecCCCCC
Confidence            6777777665 333211             114566778888888877765542 1 223  67888999988875433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.4e-07  Score=71.40  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=66.9

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|++|+++++. +....     ........+|+.+++++ +.++...-.. ...+++|++|+++++ .++.-.-. 
T Consensus       102 ~~l~~L~~L~l~~n~-~~~~~-----~~~~~~~~~L~~l~l~~-N~l~~i~~~~-f~~~~~L~~L~l~~N-~l~~l~~~-  171 (284)
T d1ozna_         102 HGLGRLHTLHLDRCG-LQELG-----PGLFRGLAALQYLYLQD-NALQALPDDT-FRDLGNLTHLFLHGN-RISSVPER-  171 (284)
T ss_dssp             TTCTTCCEEECTTSC-CCCCC-----TTTTTTCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS-CCCEECTT-
T ss_pred             cccccCCEEecCCcc-ccccc-----ccccchhcccchhhhcc-ccccccChhH-hccccchhhcccccC-cccccchh-
Confidence            455667777776643 21110     01112346677777776 3444321111 223566777777765 33321111 


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                      ...++++|+.++++++ .+++-.- ..+..+++|++|+++++ .++...             ...+.+++.|+.++++++
T Consensus       172 ~f~~l~~L~~l~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N-~i~~~~-------------~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFAN-NLSALP-------------TEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCC-------------HHHHTTCTTCCEEECCSS
T ss_pred             hhccccccchhhhhhc-cccccCh-hHhhhhhhccccccccc-cccccc-------------ccccccccccCEEEecCC
Confidence            1235667777777765 3332111 11234667777777775 443321             113455666677776655


Q ss_pred             CC
Q 023841          241 NG  242 (276)
Q Consensus       241 ~~  242 (276)
                      ..
T Consensus       236 ~l  237 (284)
T d1ozna_         236 PW  237 (284)
T ss_dssp             CE
T ss_pred             CC
Confidence            53

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.75  E-value=2.3e-06  Score=65.37  Aligned_cols=125  Identities=20%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ..++.++++++....-..     +..+++|+.|+++++ .+++-  ..+...+    ++|+.|+++++ .++.  +..+ 
T Consensus        48 ~~L~~L~Ls~n~I~~i~~-----l~~l~~L~~L~Ls~N-~i~~i--~~~~~~~----~~L~~L~l~~N-~i~~--l~~~-  111 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS-----LSGMENLRILSLGRN-LIKKI--ENLDAVA----DTLEELWISYN-QIAS--LSGI-  111 (198)
T ss_dssp             TTCCEEECSEEEESCCCC-----HHHHTTCCEEECCEE-EECSC--SSHHHHH----HHCCEEECSEE-ECCC--HHHH-
T ss_pred             cccceeECcccCCCCccc-----ccCCccccChhhccc-ccccc--ccccccc----ccccccccccc-cccc--cccc-
Confidence            467788888765332211     357889999999985 44331  1122222    67999999994 7775  3333 


Q ss_pred             hhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCH--------HH-HHHHHhcCCCccEEecC
Q 023841          137 STCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLD--------KS-LQLIADNYQELESLNLT  200 (276)
Q Consensus       137 ~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd--------~~-~~~l~~~~~~L~~L~l~  200 (276)
                      ..+++|+.|+++++ .+++- .+..+. .+++|+.|+++++ .++.        .. -..+...+|+|+.||-.
T Consensus       112 ~~l~~L~~L~L~~N-~i~~~~~~~~l~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         112 EKLVNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHHHHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cccccccccccccc-hhcccccccccc-CCCccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            34789999999987 56553 345554 7999999999986 2221        11 22345579999999843

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=2.5e-06  Score=60.00  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNY  191 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~  191 (276)
                      +++|++|++++ +.++.-. ..+ ..+++|+.|+++++ .+++  +..+ ..+++|++|+++++ .+++ ..+..+ ..+
T Consensus        19 l~~L~~L~ls~-N~l~~lp-~~~-~~l~~L~~L~l~~N-~i~~--l~~~-~~l~~L~~L~l~~N-~i~~~~~~~~l-~~~   89 (124)
T d1dcea3          19 LLLVTHLDLSH-NRLRALP-PAL-AALRCLEVLQASDN-ALEN--VDGV-ANLPRLQELLLCNN-RLQQSAAIQPL-VSC   89 (124)
T ss_dssp             GTTCCEEECCS-SCCCCCC-GGG-GGCTTCCEEECCSS-CCCC--CGGG-TTCSSCCEEECCSS-CCCSSSTTGGG-GGC
T ss_pred             CCCCCEEECCC-CccCcch-hhh-hhhhcccccccccc-cccc--cCcc-ccccccCeEECCCC-ccCCCCCchhh-cCC
Confidence            37788888877 4555421 122 34777888887765 4443  2223 36777777777775 4442 222233 347


Q ss_pred             CCccEEecCCC
Q 023841          192 QELESLNLTRY  202 (276)
Q Consensus       192 ~~L~~L~l~~c  202 (276)
                      ++|+.|++++.
T Consensus        90 ~~L~~L~l~~N  100 (124)
T d1dcea3          90 PRLVLLNLQGN  100 (124)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            77777777774

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.8e-05  Score=53.40  Aligned_cols=45  Identities=13%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             CCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEE
Q 023841           16 TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI   62 (276)
Q Consensus        16 ~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l   62 (276)
                      ..+..| +|++..||+||+..|+.++++||+.|+. ++.+...|+.+
T Consensus        18 ~i~~LP-~Eil~~Ils~Ld~~dL~~~~~vcr~w~~-l~~~~~lW~~~   62 (102)
T d2ovrb1          18 FISLLP-KELALYVLSFLEPKDLLQAAQTCRYWRI-LAEDNLLWREK   62 (102)
T ss_dssp             TTTSSC-HHHHHHHHTTSCHHHHHHHTTSCHHHHH-HHTCSHHHHHH
T ss_pred             ChhhCC-HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHCCHHHHHHH
Confidence            344544 6899999999999999999999999765 56777778754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1e-06  Score=70.57  Aligned_cols=153  Identities=15%  Similarity=0.111  Sum_probs=98.5

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      +++++|+++++ .++.-....+     ..+++|++|+++++ .++.-.  .. ..+++|++|+++++ .++..  .....
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f-----~~l~~L~~L~L~~N-~l~~l~--~~-~~l~~L~~L~Ls~N-~l~~~--~~~~~   97 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATL-----MPYTRLTQLNLDRA-ELTKLQ--VD-GTLPVLGTLDLSHN-QLQSL--PLLGQ   97 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGG-----TTCTTCCEEECTTS-CCCEEE--CC-SCCTTCCEEECCSS-CCSSC--CCCTT
T ss_pred             cCCCEEECcCC-cCCCcCHHHh-----hccccccccccccc-cccccc--cc-cccccccccccccc-ccccc--ccccc
Confidence            57999999984 5543211112     34689999999995 666421  12 35889999999987 44321  22345


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      .+++|+.|+++++...+ ... .....+++++.|+++++ .++...             .....+++.++.++++.+.+.
T Consensus        98 ~l~~L~~L~l~~~~~~~-~~~-~~~~~l~~l~~L~l~~n-~l~~l~-------------~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTS-LPL-GALRGLGELQELYLKGN-ELKTLP-------------PGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             TCTTCCEEECCSSCCCC-CCS-STTTTCTTCCEEECTTS-CCCCCC-------------TTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccccccccce-eec-ccccccccccccccccc-ccceec-------------cccccccccchhccccccccc
Confidence            77899999999863221 110 11234788999999986 443211             114556788999999888765


Q ss_pred             CCcceeEEEeeccCCCCceeeeecce
Q 023841          244 DHLAFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      .. .. ..+  ..+++|++|+++++.
T Consensus       162 ~~-~~-~~~--~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         162 EL-PA-GLL--NGLENLDTLLLQENS  183 (266)
T ss_dssp             CC-CT-TTT--TTCTTCCEEECCSSC
T ss_pred             cc-Cc-ccc--ccccccceeecccCC
Confidence            44 21 112  578999999998764

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.9e-05  Score=53.83  Aligned_cols=42  Identities=19%  Similarity=0.193  Sum_probs=35.7

Q ss_pred             HHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecC
Q 023841           23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLR   65 (276)
Q Consensus        23 p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~   65 (276)
                      |||+..||+||+..|+.++++||+.|+. ++.+...|+.+...
T Consensus        20 ~EI~~~Ils~Ld~~dL~~~s~Vck~W~~-l~~d~~lWk~~~~~   61 (118)
T d1p22a1          20 DHIAENILSYLDAKSLCAAELVCKEWYR-VTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCHHHHH-HHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHh
Confidence            4899999999999999999999999664 66778888876543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.17  E-value=5.4e-07  Score=73.89  Aligned_cols=109  Identities=11%  Similarity=0.113  Sum_probs=60.2

Q ss_pred             CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (276)
Q Consensus        58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  137 (276)
                      ++..+++++........+-. .+..+++|++|++++++.++...-..|     ..+++|++|+++++ .+...... ...
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l~g~iP~~i-----~~L~~L~~L~Ls~N-~l~~~~~~-~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAI-----AKLTQLHYLYITHT-NVSGAIPD-FLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGG-----GGCTTCSEEEEEEE-CCEEECCG-GGG
T ss_pred             EEEEEECCCCCCCCCCCCCh-HHhcCcccccccccccccccccccccc-----ccccccchhhhccc-cccccccc-ccc
Confidence            46667777654432211101 235789999999987544432110112     23588999999884 44332211 233


Q ss_pred             hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  176 (276)
Q Consensus       138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c  176 (276)
                      .+++|+.++++++.. ....-.. ...+++|+.++++++
T Consensus       123 ~~~~L~~l~l~~N~~-~~~~p~~-l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         123 QIKTLVTLDFSYNAL-SGTLPPS-ISSLPNLVGITFDGN  159 (313)
T ss_dssp             GCTTCCEEECCSSEE-ESCCCGG-GGGCTTCCEEECCSS
T ss_pred             chhhhcccccccccc-cccCchh-hccCcccceeecccc
Confidence            477888888876532 1111112 236778888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=6e-06  Score=62.56  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      +++++|+++++ .++...-...    ...+++|++|++++. .+....-. .....++|++|+++++ .++.-.-. ...
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~----f~~l~~L~~L~L~~N-~i~~~~~~-~~~~~~~L~~L~Ls~N-~l~~l~~~-~F~   99 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGEN-KIKEISNK-MFL   99 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSC-CCCEECSS-SST
T ss_pred             CCCCEEEeCCC-CCcccccccc----cCCCceEeeeecccc-cccccccc-ccccccccceeeeccc-cccccCHH-HHh
Confidence            57888998884 4432110111    122488999999884 55432222 2234788999999876 44321111 224


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  203 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~  203 (276)
                      ++++|++|+|+++ .++.-.- ..+..+++|++|++++.+
T Consensus       100 ~l~~L~~L~L~~N-~l~~i~~-~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         100 GLHQLKTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred             CCCcccccccCCc-cccccCH-HHhcCCcccccccccccc
Confidence            6889999999986 5542111 112357899999998863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00021  Score=52.24  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             CCccEEecCCCCCCCHH-HHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCC------HHHHH
Q 023841          114 QDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLL------DKSLQ  185 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~lt------d~~~~  185 (276)
                      ++|+.|++++ +.+++. ++......+++|+.|+++++ .+++ ..+..+  ...+|+.|+++++ .++      .....
T Consensus        65 ~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l--~~~~L~~L~L~~N-pl~~~~~~~~~y~~  139 (162)
T d1koha1          65 PELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--KGLKLEELWLDGN-SLSDTFRDQSTYIS  139 (162)
T ss_dssp             TTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH--TTCCCSSCCCTTS-TTSSSSSSHHHHHH
T ss_pred             CCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhhh--hccccceeecCCC-CcCcCcccchhHHH
Confidence            5666666666 344442 22233344566666666654 3332 222222  2334566666553 221      12233


Q ss_pred             HHHhcCCCccEEe
Q 023841          186 LIADNYQELESLN  198 (276)
Q Consensus       186 ~l~~~~~~L~~L~  198 (276)
                      .+.+.+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            3444455555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00022  Score=52.09  Aligned_cols=66  Identities=30%  Similarity=0.364  Sum_probs=38.1

Q ss_pred             HHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCC
Q 023841          133 EIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       133 ~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      ..+...+++|++|+|+++ .+++ ..+......+++|+.|+++++ .+++ ..+..+  ....|+.|+++++
T Consensus        58 ~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l--~~~~L~~L~L~~N  125 (162)
T d1koha1          58 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--KGLKLEELWLDGN  125 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH--TTCCCSSCCCTTS
T ss_pred             HHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh--hccccceeecCCC
Confidence            344456777777777766 4543 223333446777777777775 4442 233333  2345777777775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.05  E-value=9.6e-05  Score=59.65  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (276)
Q Consensus       113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~  192 (276)
                      +++|+.++++++ .++.-.    ...+++|++|+++++ ..+...... ..+++.++.|+++++ .+++..... ...++
T Consensus       149 l~~L~~l~l~~n-~l~~l~----~~~~~~L~~L~l~~n-~~~~~~~~~-~~~~~~l~~L~~s~n-~l~~~~~~~-~~~l~  219 (305)
T d1xkua_         149 MKKLSYIRIADT-NITTIP----QGLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNGS-LANTP  219 (305)
T ss_dssp             CTTCCEEECCSS-CCCSCC----SSCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSS-CCCEECTTT-GGGST
T ss_pred             ccccCccccccC-CccccC----cccCCccCEEECCCC-cCCCCChhH-hhccccccccccccc-ccccccccc-ccccc
Confidence            466777777764 333210    113566777777764 222221122 235677777777775 444322211 23477


Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCc--ceeEEEeeccCCCCceeeeecce
Q 023841          193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHL--AFAYIIETNTYKHGKEKHIIETI  269 (276)
Q Consensus       193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~  269 (276)
                      +|++|++++| .++.-  .            ..+..+++|+.++++.+.++.-.  .|.........++|+.+++.+.+
T Consensus       220 ~L~~L~L~~N-~L~~l--p------------~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         220 HLRELHLNNN-KLVKV--P------------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TCCEEECCSS-CCSSC--C------------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cceeeecccc-ccccc--c------------cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            7888888776 44321  0            03455677778887776655321  11111112455677777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.90  E-value=2.7e-05  Score=58.82  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841           56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII  135 (276)
Q Consensus        56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l  135 (276)
                      +..++.+++++........  ...+...++|++|+++++ .+.....     .....+++|++|++++ +.++.-.-.+ 
T Consensus        28 p~~l~~L~Ls~N~i~~~~~--~~~f~~l~~L~~L~L~~N-~i~~~~~-----~~~~~~~~L~~L~Ls~-N~l~~l~~~~-   97 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRN-QLTGIEP-----NAFEGASHIQELQLGE-NKIKEISNKM-   97 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSS-CCCCBCT-----TTTTTCTTCCEEECCS-CCCCEECSSS-
T ss_pred             CCCCCEEEeCCCCCccccc--ccccCCCceEeeeecccc-ccccccc-----cccccccccceeeecc-ccccccCHHH-
Confidence            4567889998876532111  112357899999999984 4432211     1123468999999999 4666522222 


Q ss_pred             HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCC
Q 023841          136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL  179 (276)
Q Consensus       136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~l  179 (276)
                      ..++++|++|+|+++ .++.-.-. ....+++|++|+++++...
T Consensus        98 F~~l~~L~~L~L~~N-~l~~i~~~-~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred             HhCCCcccccccCCc-cccccCHH-HhcCCcccccccccccccc
Confidence            245899999999986 44421111 1236789999999986443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.79  E-value=0.00019  Score=57.80  Aligned_cols=139  Identities=15%  Similarity=0.168  Sum_probs=85.6

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ..+++|+.+++.++. ++.     +.   ...+++|++|+++++ ..+...... ...++.++.|+++++ .++..... 
T Consensus       147 ~~l~~L~~l~l~~n~-l~~-----l~---~~~~~~L~~L~l~~n-~~~~~~~~~-~~~~~~l~~L~~s~n-~l~~~~~~-  213 (305)
T d1xkua_         147 QGMKKLSYIRIADTN-ITT-----IP---QGLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNG-  213 (305)
T ss_dssp             GGCTTCCEEECCSSC-CCS-----CC---SSCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSS-CCCEECTT-
T ss_pred             ccccccCccccccCC-ccc-----cC---cccCCccCEEECCCC-cCCCCChhH-hhccccccccccccc-cccccccc-
Confidence            567889999998853 321     11   123589999999985 444432222 345789999999976 55443222 


Q ss_pred             HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  240 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~  240 (276)
                      ...++++|++|++++| .++.  +..-...+++|+.|+++++ +++.-+-..+..       .........|+.+.++.+
T Consensus       214 ~~~~l~~L~~L~L~~N-~L~~--lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~-------~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         214 SLANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCP-------PGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             TGGGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSC-------SSCCTTSCCCSEEECCSS
T ss_pred             cccccccceeeecccc-cccc--cccccccccCCCEEECCCC-ccCccChhhccC-------cchhcccCCCCEEECCCC
Confidence            2347899999999997 4541  1111235899999999997 676422111100       001233456778888777


Q ss_pred             CCC
Q 023841          241 NGG  243 (276)
Q Consensus       241 ~~~  243 (276)
                      .+.
T Consensus       283 ~~~  285 (305)
T d1xkua_         283 PVQ  285 (305)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=1.5e-06  Score=68.33  Aligned_cols=85  Identities=9%  Similarity=0.106  Sum_probs=44.0

Q ss_pred             CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (276)
Q Consensus        57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  136 (276)
                      ..++.+++++.....-.   .-.+..+++|++|+++++.....     +.......+++++++.+..++.+....... .
T Consensus        29 ~~l~~L~Ls~n~i~~l~---~~~f~~l~~L~~L~ls~n~~~~~-----i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~   99 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ---KGAFSGFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYINPEA-F   99 (242)
T ss_dssp             SCCSEEEEESCCCCEEC---TTTTTTCTTCCEEEEESCTTCCE-----ECSSSEESCTTCCEEEEECCTTCCEECTTS-E
T ss_pred             CCCCEEECcCCcCCccC---hhHhhccchhhhhhhccccccce-----eecccccccccccccccccccccccccccc-c
Confidence            45667777665432211   11235677888888877532211     000011234677777776655544432222 2


Q ss_pred             hhCCCCCeEeccCC
Q 023841          137 STCPELKVFSIYWN  150 (276)
Q Consensus       137 ~~~~~L~~L~L~~~  150 (276)
                      ..+++|++|+++++
T Consensus       100 ~~l~~L~~l~l~~~  113 (242)
T d1xwdc1         100 QNLPNLQYLLISNT  113 (242)
T ss_dssp             ECCTTCCEEEEESC
T ss_pred             cccccccccccchh
Confidence            34677787777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.00081  Score=48.61  Aligned_cols=59  Identities=20%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      +++|+.|+++++ .++.-.-. ...++++|++|+++++ .++.-.. ..+ ...+|++|+|++.
T Consensus        55 l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~l~~-~~~-~~~~l~~L~L~~N  113 (156)
T d2ifga3          55 LGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSW-KTV-QGLSLQELVLSGN  113 (156)
T ss_dssp             CCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCS-TTT-CSCCCCEEECCSS
T ss_pred             ccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCcccCh-hhh-ccccccccccCCC
Confidence            455555555543 23221111 1224566666666664 3321000 001 1345777887775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0011  Score=47.85  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (276)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~  160 (276)
                      ...++|++|.+.+...++.-....+     ..+++|+.|++++ +.++.-.-.+ ...+++|++|+|+++ .++.-.- .
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f-----~~l~~L~~L~Ls~-N~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~l~~-~   98 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSW-K   98 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSS-CCSCCCS-T
T ss_pred             cCccccCeeecCCCccccccCchhh-----ccccccCcceeec-cccCCccccc-ccccccccceeccCC-CCcccCh-h
Confidence            4678999999976544443222222     3468999999999 4666532222 345899999999986 4431100 1


Q ss_pred             HHHhCCCCcEEecCCCCC
Q 023841          161 LVKNCKHIIDLNLSGCKN  178 (276)
Q Consensus       161 l~~~~~~L~~L~l~~c~~  178 (276)
                      +. ...+|++|+++++..
T Consensus        99 ~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          99 TV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             TT-CSCCCCEEECCSSCC
T ss_pred             hh-ccccccccccCCCcc
Confidence            11 234799999998643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.93  E-value=0.024  Score=45.38  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (276)
Q Consensus       114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~  193 (276)
                      .++++|+++++ .++.     +....++|++|+++++ .++     .+.....+|+.|+++++ .++.     +..-.+.
T Consensus        38 ~~l~~LdLs~~-~L~~-----lp~~~~~L~~L~Ls~N-~l~-----~lp~~~~~L~~L~l~~n-~l~~-----l~~lp~~   99 (353)
T d1jl5a_          38 RQAHELELNNL-GLSS-----LPELPPHLESLVASCN-SLT-----ELPELPQSLKSLLVDNN-NLKA-----LSDLPPL   99 (353)
T ss_dssp             HTCSEEECTTS-CCSC-----CCSCCTTCSEEECCSS-CCS-----SCCCCCTTCCEEECCSS-CCSC-----CCSCCTT
T ss_pred             cCCCEEEeCCC-CCCC-----CCCCCCCCCEEECCCC-CCc-----ccccchhhhhhhhhhhc-ccch-----hhhhccc
Confidence            57999999995 5543     2234678999999965 554     23344679999999986 3431     1122357


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      |++|+++++ .++..  .             ....++.|+.+++.++...
T Consensus       100 L~~L~L~~n-~l~~l--p-------------~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         100 LEYLGVSNN-QLEKL--P-------------ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCEEECCSS-CCSSC--C-------------CCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccc-ccccc--c-------------chhhhccceeecccccccc
Confidence            999999997 45431  0             1234567888888766654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.00076  Score=52.12  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=52.5

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      +++++|+++++ .++.     +....-..+++|++|+++++ .+....-......+++++++.+..+..+....... ..
T Consensus        29 ~~l~~L~Ls~n-~i~~-----l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~~  100 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRV-----IQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-FQ  100 (242)
T ss_dssp             SCCSEEEEESC-CCCE-----ECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS-EE
T ss_pred             CCCCEEECcCC-cCCc-----cChhHhhccchhhhhhhccc-cccceeecccccccccccccccccccccccccccc-cc
Confidence            58999999984 4542     11111133589999999985 33221000112347888888877654444322222 24


Q ss_pred             hCCCCcEEecCCCCCCC
Q 023841          164 NCKHIIDLNLSGCKNLL  180 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~lt  180 (276)
                      .+++|++|+++++ .++
T Consensus       101 ~l~~L~~l~l~~~-~l~  116 (242)
T d1xwdc1         101 NLPNLQYLLISNT-GIK  116 (242)
T ss_dssp             CCTTCCEEEEESC-CCC
T ss_pred             ccccccccccchh-hhc
Confidence            6889999999986 444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=92.94  E-value=0.00091  Score=53.89  Aligned_cols=110  Identities=14%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (276)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~  163 (276)
                      .++++|+++++ .++...  .+... ...+++|++|++++|+.++..--..+. .+++|++|+++++ .++... .....
T Consensus        50 ~~v~~L~L~~~-~l~g~~--~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N-~l~~~~-~~~~~  122 (313)
T d1ogqa_          50 YRVNNLDLSGL-NLPKPY--PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHT-NVSGAI-PDFLS  122 (313)
T ss_dssp             CCEEEEEEECC-CCSSCE--ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEE-CCEEEC-CGGGG
T ss_pred             EEEEEEECCCC-CCCCCC--CCChH-HhcCccccccccccccccccccccccc-cccccchhhhccc-cccccc-ccccc
Confidence            36889999884 332110  00011 123699999999986544321111233 4899999999976 332211 12234


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  202 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c  202 (276)
                      .+++|+.++++++.... ..-.. ...++.++.++++++
T Consensus       123 ~~~~L~~l~l~~N~~~~-~~p~~-l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSG-TLPPS-ISSLPNLVGITFDGN  159 (313)
T ss_dssp             GCTTCCEEECCSSEEES-CCCGG-GGGCTTCCEEECCSS
T ss_pred             chhhhcccccccccccc-cCchh-hccCcccceeecccc
Confidence            68899999999863221 10011 235888999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.59  E-value=0.028  Score=44.96  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  243 (276)
Q Consensus       164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~  243 (276)
                      .+++|++|++++| .++.     +....++|++|++++| .+++-  .               ..+++|+.++++++.+.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N-~L~~l--~---------------~~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFN-HLAEV--P---------------ELPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCC--C---------------CCCTTCCEEECCSSCCS
T ss_pred             cCCCCCEEECCCC-ccCc-----cccccCCCCEEECCCC-cCCcc--c---------------cccCCCCEEECcCCcCC
Confidence            4678999999997 4431     2334789999999987 56541  1               12457889999888876


Q ss_pred             CC
Q 023841          244 DH  245 (276)
Q Consensus       244 ~~  245 (276)
                      .-
T Consensus       338 ~l  339 (353)
T d1jl5a_         338 EF  339 (353)
T ss_dssp             SC
T ss_pred             CC
Confidence            43