Citrus Sinensis ID: 023847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccccccccccccccccHHcccccccccEEEccccccccc
Coil and Loop (DISEMBL)
mdpplvnessfsaanpssyslaeiwpfpinnggagdaglrmgnmghgfgessalrdgsmeestvteqsgggcgrkrrdlssedesskivsttssandlndsngkwmktsgsknengskaeveassaagnkpaesskpseppkdyihvrarrgqatdshSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSrmnltptiegfhpkdlgeqafdatgmifgsQTAREYAQGSQQDWlhmqvggsferat
Flexible Loop (DISEMBL)
MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEEStvteqsgggcgrkrrdlssedesskivsttssandlndsngkwmktsgsknengSKAEVEASsaagnkpaesskpseppkDYIHVRarrgqatdshslaeRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Low Complexity Region (SEG)
MDPPLVNEssfsaanpssysLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNkpaesskpseppkDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Disordered region (IsUnstruct)
********************LAEIWPFPINNGG*******************************************************************************************************************************************MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQ**************************
Disordered Region (DISOPRED)
**PP*****************************************************************************************************************************************************************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF*******************************************************************
Disordered Region (DISEMBL)
***************PSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGES**********************************************LNDSNGKWMK*********************************PKDYIHVR*****************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Disordered Region (DISPRO)
********************************************************************************************************************************************PKDYIHVRARRGQ***SHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYxxxxxxxxxxxxxxxxxxxxxMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9LV17	281	Transcription factor bHLH	yes	no	0.985	0.967	0.589	3e-76
Q0JXE7	343	Transcription factor BPE	no	no	0.724	0.583	0.541	9e-51
Q9LK48	371	Transcription factor bHLH	no	no	0.521	0.388	0.591	2e-41
Q9SRT2	456	Transcription factor bHLH	no	no	0.623	0.377	0.505	3e-41
Q9FJL4	498	Transcription factor bHLH	no	no	0.539	0.299	0.578	3e-40
Q9CAA9	486	Transcription factor bHLH	no	no	0.344	0.195	0.775	4e-38
Q8GY61	335	Transcription factor bHLH	no	no	0.681	0.561	0.459	4e-36
Q93W88	286	Transcription factor bHLH	no	no	0.391	0.377	0.690	1e-35
Q6NKN9	366	Transcription factor bHLH	no	no	0.365	0.275	0.692	2e-34
Q9C670	390	Transcription factor bHLH	no	no	0.431	0.305	0.598	2e-34

>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 168/285 (58%), Positives = 200/285 (70%), Gaps = 13/285 (4%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMG-NMGHGF--GESSALRDG 57
           MDPPLVN+SSFSAANPSSY+L+EIWPFP+N+  A  +GLR+  N G  F   E S  +D 
Sbjct: 1   MDPPLVNDSSFSAANPSSYTLSEIWPFPVND--AVRSGLRLAVNSGRVFTRSEHSGNKDV 58

Query: 58  SM-EESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG 116
           S  EESTVT+ + G   RK RDL+SED+SSK+VS++SS N+L +S  K  K  GS++ NG
Sbjct: 59  SAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLCGSESGNG 118

Query: 117 S-----KAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISE 171
                 + E  +         + +KP EPPKDYIHVRARRGQATD HSLAERARREKISE
Sbjct: 119 DGSMRPEGETSSGGGGSKATEQKNKP-EPPKDYIHVRARRGQATDRHSLAERARREKISE 177

Query: 172 RMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFH 231
           +M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VNS  +  PTI  F 
Sbjct: 178 KMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFP 237

Query: 232 PKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
             DLG    D    I+  Q A E  + SQ +WLHMQV G+F R T
Sbjct: 238 SGDLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  200 bits (509), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 146/227 (64%), Gaps = 27/227 (11%)

Query: 19  YSLAEIWPFPINN-GGAGDAGLRMGNMGHGFGESS---------ALRDGSMEESTVTEQS 68
           ++LAEIW FP+N    AGD+  R     + FG++          A    ++ ++ +   S
Sbjct: 13  FNLAEIWQFPLNGVSTAGDSSRRSFVGPNQFGDADLTTAANGDPARMSHALSQAVIEGIS 72

Query: 69  GGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAG 128
           G     KRR+   E +S+KIVST  ++   N       K          KAE E+    G
Sbjct: 73  GAW---KRRE--DESKSAKIVSTIGASEGEN-------KRQKIDEVCDGKAEAES---LG 117

Query: 129 NKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 188
            +  +  +  EP KDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG
Sbjct: 118 TETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 177

Query: 189 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 235
           KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN  P IE F PK++
Sbjct: 178 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 111/159 (69%), Gaps = 15/159 (9%)

Query: 74  RKRRDLSSED--ESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNKP 131
           RKR+ + S +  ES    S T+S + ++  NG      GSK    SK +V  SS  G + 
Sbjct: 115 RKRKSIPSGNGKESPASSSLTASNSKVSGENG------GSKGGKRSKQDVAGSSKNGVEK 168

Query: 132 AES-------SKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCN 184
            +S       +KP E PKDYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN
Sbjct: 169 CDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCN 228

Query: 185 KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 223
           ++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM  
Sbjct: 229 RITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEF 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 121/198 (61%), Gaps = 26/198 (13%)

Query: 26  PFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDES 85
           PFPINN        +M  +      SS+     +       +S G   RKR+  S ++  
Sbjct: 163 PFPINNEPPITTNEKMPRV------SSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSP 216

Query: 86  SKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNKPAESSKPSEPPKDYI 145
           S  VS++    +  DS+ K  K S    ENG K                +K  +P KDYI
Sbjct: 217 SA-VSSSKEIEEKEDSDPKRCKKS---EENGDK----------------TKSIDPYKDYI 256

Query: 146 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQR 205
           HVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQR
Sbjct: 257 HVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQR 316

Query: 206 QVEFLSMKLEAVNSRMNL 223
           QVEFLSMKL +VN+R++ 
Sbjct: 317 QVEFLSMKLSSVNTRLDF 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 106/159 (66%), Gaps = 10/159 (6%)

Query: 69  GGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKN--ENGSKAEVEASSA 126
           GG   RKR+ +         +ST S +   + +  K     GSK+  E G K   E    
Sbjct: 215 GGEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDD 274

Query: 127 AG-------NKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 179
                    NK + ++KP EPPKDYIHVRARRGQATDSHSLAER RREKI ERMK+LQDL
Sbjct: 275 EEEEGEGEGNK-SNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDL 333

Query: 180 VPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 218
           VPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN
Sbjct: 334 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVN 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 138 SEPPKD-YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEI 196
           S+PPKD YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEI
Sbjct: 293 SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352

Query: 197 INYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKD 234
           INY+QSLQRQVEFLSMKL  VN +M+    +EG   KD
Sbjct: 353 INYVQSLQRQVEFLSMKLATVNPQMDF--NLEGLLAKD 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  152 bits (383), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 122/198 (61%), Gaps = 10/198 (5%)

Query: 32  GGAGDAGLRMG--NMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESSKIV 89
           GG  D+ L     N+   +GE++   D  +  S  T    G   +++ D  ++D + K  
Sbjct: 49  GGEMDSYLSTAGLNLPMMYGETTVEGDSRLSISPETTLGTGNFKKRKFDTETKDCNEKKK 108

Query: 90  STTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAA-----GNKPAESSKPSEPPK-- 142
             T + +DL +  G+  K+  ++  NGS   ++           N   +SSK ++  +  
Sbjct: 109 KMTMNRDDLVEE-GEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKT 167

Query: 143 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 202
           DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QS
Sbjct: 168 DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQS 227

Query: 203 LQRQVEFLSMKLEAVNSR 220
           LQRQ+EFLSMKL  VN R
Sbjct: 228 LQRQIEFLSMKLAIVNPR 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 5/113 (4%)

Query: 107 KTSGSK--NENGSKAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERA 164
           KT G K  N N SK  VE   +   K    SK  EPP DYIHVRARRGQATDSHSLAER 
Sbjct: 97  KTRGRKARNSNNSKEGVEGRKSKKQK--RGSK-EEPPTDYIHVRARRGQATDSHSLAERV 153

Query: 165 RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 217
           RREKISERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 154 RREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 87/104 (83%), Gaps = 3/104 (2%)

Query: 133 ESSKPSEPPKD-YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 191
           ESS+  E PK+ YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA+
Sbjct: 191 ESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAV 250

Query: 192 VLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 235
           +LDEIINY+QSLQ+QVEFLSMKL  VN  +N+   I+    KDL
Sbjct: 251 MLDEIINYVQSLQQQVEFLSMKLATVNPEINI--DIDRILAKDL 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 92/122 (75%), Gaps = 3/122 (2%)

Query: 114 ENGSKAEVEASSAAGNKPAESSKPSEPPKD-YIHVRARRGQATDSHSLAERARREKISER 172
           E+  + + ++ ++  NK     +PS+  KD YIH+RARRGQAT+SHSLAER RREKISER
Sbjct: 189 EDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISER 248

Query: 173 MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHP 232
           MK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++    +E    
Sbjct: 249 MKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDF--NLESLLA 306

Query: 233 KD 234
           KD
Sbjct: 307 KD 308

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224119176	272	predicted protein [Populus trichocarpa]	0.963	0.977	0.751	1e-110
255540845	275	DNA binding protein, putative [Ricinus c	0.974	0.978	0.776	1e-109
449440736	276	PREDICTED: transcription factor bHLH79-l	0.985	0.985	0.735	1e-108
225456604	284	PREDICTED: transcription factor bHLH79 i	0.989	0.961	0.742	1e-105
297734057	269	unnamed protein product [Vitis vinifera]	0.963	0.988	0.749	1e-103
147821091	328	hypothetical protein VITISV_027596 [Viti	0.989	0.832	0.649	2e-98
55419646	222	bHLH transcription factor [Gossypium hir	0.789	0.981	0.815	6e-94
224133354	213	predicted protein [Populus trichocarpa]	0.735	0.953	0.821	1e-87
225456606	262	PREDICTED: transcription factor bHLH79 i	0.909	0.958	0.665	2e-87
339716200	301	putative MYC protein [Tamarix hispida]	0.963	0.883	0.627	6e-87

>gi|224119176|ref|XP_002318005.1| predicted protein [Populus trichocarpa] gi|222858678|gb|EEE96225.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/282 (75%), Positives = 232/282 (82%), Gaps = 16/282 (5%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSME 60
           MDPPL+NE SFSAANPSSYSL EIWPFP  +  A   GLRM N+        A RDGS++
Sbjct: 1   MDPPLINEKSFSAANPSSYSLTEIWPFPPPSSTA--LGLRMANL--------ADRDGSVD 50

Query: 61  ESTVTEQSGGG--CGRKRRDLSSE-DESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG- 116
           ESTVTEQ GG     RK RDLSSE D+SS +VSTT+SA+DLND NGK  K SGS+NEN  
Sbjct: 51  ESTVTEQRGGNRNGNRKARDLSSEEDDSSIMVSTTTSAHDLNDLNGKRRKISGSRNENND 110

Query: 117 SKAEVEASSAAGNKPAE-SSKPSEPP-KDYIHVRARRGQATDSHSLAERARREKISERMK 174
           S+AE+EASSAA NKPAE SSKPSEPP +DYIHVR+RRGQATDSHSLAERARRE+I ERMK
Sbjct: 111 SRAEIEASSAANNKPAEPSSKPSEPPMQDYIHVRSRRGQATDSHSLAERARRERIGERMK 170

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKD 234
           ILQDLVPGCNKVIGKAL LDEIINYIQSLQ QVEFLSMKLEAVNSRM+ +P IEG HPKD
Sbjct: 171 ILQDLVPGCNKVIGKALALDEIINYIQSLQCQVEFLSMKLEAVNSRMSTSPAIEGLHPKD 230

Query: 235 LGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           LG Q FDATGMIFG Q  R+Y QGSQ +WLHMQVGGSF+RAT
Sbjct: 231 LGAQPFDATGMIFGPQPTRDYVQGSQPEWLHMQVGGSFKRAT 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540845|ref|XP_002511487.1| DNA binding protein, putative [Ricinus communis] gi|223550602|gb|EEF52089.1| DNA binding protein, putative [Ricinus communis]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/278 (77%), Positives = 234/278 (84%), Gaps = 9/278 (3%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGA-GDAGLRMGNMGHGFGESSALRDGSM 59
           MDPPL++E+SFSAANPSSY+L EIWPF   NG A    GLR+GN+  GFGE    RDGS+
Sbjct: 1   MDPPLISETSFSAANPSSYTLTEIWPFSALNGDASAGLGLRVGNLSAGFGE----RDGSV 56

Query: 60  EESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG-SK 118
           EESTVTEQS GG GRKRRD SSEDESSK+VST+SS N+L DSN K MK SGS+NENG SK
Sbjct: 57  EESTVTEQSVGG-GRKRRDFSSEDESSKMVSTSSSGNELQDSNVKRMKISGSQNENGKSK 115

Query: 119 AEVEASSAAGNKPAE-SSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKISERMKIL 176
           AEVEASSA     AE +SK SEPPK DYIHVRARRGQATDSHSLAERARREKISERMKIL
Sbjct: 116 AEVEASSANDKNAAEQNSKISEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKIL 175

Query: 177 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLG 236
           QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM + PT+EGFHPKD  
Sbjct: 176 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMGMNPTVEGFHPKDAD 235

Query: 237 EQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFER 274
            Q FDATGMIFG Q AR+YAQ S  +WLHMQ+GG+ ER
Sbjct: 236 AQPFDATGMIFGPQVARDYAQASHHEWLHMQIGGNLER 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440736|ref|XP_004138140.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus] gi|449477343|ref|XP_004154996.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 232/280 (82%), Gaps = 8/280 (2%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGH---GFGESSALRDG 57
           MDPPLVNESSFSAANPSSYSLA IWPF  + GG+   GLRM N+     GF E S  RDG
Sbjct: 1   MDPPLVNESSFSAANPSSYSLASIWPFGGDQGGSV-LGLRMANLAQNLGGFRECSTNRDG 59

Query: 58  SMEESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGS 117
           SMEESTVTEQSGGG  RKR+D+SSEDESS++VST SSAN L++SN K MK   S++ENG 
Sbjct: 60  SMEESTVTEQSGGG--RKRKDVSSEDESSRMVST-SSANQLSNSNDKRMKVVESRDENGG 116

Query: 118 -KAEVEASSAAGNKPAESSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKIL 176
            KAEV+ +S+ G K AE S   EPPKDYIHVRARRGQATDSHSLAERARREKISERMKIL
Sbjct: 117 IKAEVDPNSSDGKKLAEQSPKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKIL 176

Query: 177 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLG 236
           QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN+TP IEGF  K++ 
Sbjct: 177 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNITPGIEGFTVKNIV 236

Query: 237 EQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
            Q +DA G+++GSQ AR+Y QG+Q +WLHMQ+GG FER +
Sbjct: 237 NQPYDAAGILYGSQAARDYTQGAQTEWLHMQIGGGFERTS 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/287 (74%), Positives = 234/287 (81%), Gaps = 14/287 (4%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGA-----GDAGLRMGNMGH---GFGESS 52
           MDPPL+NESSFSAANPS+YSLAEIWPFP+N+  A        GLR+ N G     F +SS
Sbjct: 1   MDPPLINESSFSAANPSAYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSS 60

Query: 53  ALRDGSMEESTVTEQSGGGCGRKRR-DLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGS 111
           A RD S++ESTVTEQSG   G ++R D+SSEDESSKIVST SS + +N SNGK MK S +
Sbjct: 61  ANRDVSVDESTVTEQSGSRGGGRKRRDVSSEDESSKIVST-SSGSGMNASNGKRMKISRT 119

Query: 112 KNENG-SKAEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKI 169
            +ENG SKAE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAERARREKI
Sbjct: 120 PDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKI 179

Query: 170 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEG 229
           SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN   T+EG
Sbjct: 180 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--HTVEG 237

Query: 230 FHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           F  KDLG Q FDA  MI+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 238 FPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734057|emb|CBI15304.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/279 (74%), Positives = 230/279 (82%), Gaps = 13/279 (4%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSME 60
           MDPPL+NESSFSAANPS+YSLAEIWPFP+N+  A      +G    G  +SSA RD S++
Sbjct: 1   MDPPLINESSFSAANPSAYSLAEIWPFPVNSASA------IGEPTAGL-DSSANRDVSVD 53

Query: 61  ESTVTEQSGGGCGRKRR-DLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG-SK 118
           ESTVTEQSG   G ++R D+SSEDESSKIVST SS + +N SNGK MK S + +ENG SK
Sbjct: 54  ESTVTEQSGSRGGGRKRRDVSSEDESSKIVST-SSGSGMNASNGKRMKISRTPDENGGSK 112

Query: 119 AEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKISERMKILQ 177
           AE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAERARREKISERMKILQ
Sbjct: 113 AELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 172

Query: 178 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGE 237
           DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN   T+EGF  KDLG 
Sbjct: 173 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--HTVEGFPLKDLGV 230

Query: 238 QAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           Q FDA  MI+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 231 QTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821091|emb|CAN75381.1| hypothetical protein VITISV_027596 [Vitis vinifera]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 215/331 (64%), Positives = 234/331 (70%), Gaps = 58/331 (17%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGA-----GDAGLRMGNMGH---GFGESS 52
           MDPPL+NESSFSAANPS+YSLAEIWPFP+N+  A        GLR+ N G     F +SS
Sbjct: 1   MDPPLINESSFSAANPSAYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSS 60

Query: 53  ALRDGSMEESTVTEQ-SGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGS 111
           A RD S++ESTVTEQ    G GRKRRD+SSEDESSKIVS TSS + +N SNGK MK S +
Sbjct: 61  ANRDVSVDESTVTEQSGSRGGGRKRRDVSSEDESSKIVS-TSSGSGMNASNGKRMKISRT 119

Query: 112 KNEN-GSKAEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAER------ 163
            +EN GSKAE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAER      
Sbjct: 120 PDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERVMQFYT 179

Query: 164 --------------------------------------ARREKISERMKILQDLVPGCNK 185
                                                 ARREKISERMKILQDLVPGCNK
Sbjct: 180 LLIFCFLVVPQMPKLKRIGLSWNSRSRCRCIGVSVYINARREKISERMKILQDLVPGCNK 239

Query: 186 VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGM 245
           VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN   T+EGF  KDLG Q FDA  M
Sbjct: 240 VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--HTVEGFPLKDLGVQTFDAAAM 297

Query: 246 IFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           I+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 298 IYGSQATREYAQGSQPEWLHMQVGGSIERAS 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55419646|gb|AAV51936.1| bHLH transcription factor [Gossypium hirsutum]

 Score =  349 bits (896), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 181/222 (81%), Positives = 197/222 (88%), Gaps = 4/222 (1%)

Query: 59  MEESTVTEQS-GGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNEN-G 116
           MEESTVTEQS G G GRKR++LSSEDESSKIVSTT+SAN+LNDSNGK MKT  SKN N G
Sbjct: 1   MEESTVTEQSVGCGGGRKRKELSSEDESSKIVSTTTSANELNDSNGKRMKTPVSKNGNTG 60

Query: 117 SK-AEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKISERMK 174
           SK AEVEASSA G+KP ++SKP+EPPK DYIHVRARRGQATDSHSLAERARRE+ISERMK
Sbjct: 61  SKEAEVEASSADGSKPDKNSKPAEPPKQDYIHVRARRGQATDSHSLAERARRERISERMK 120

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKD 234
           ILQDLVPGCNKVIGKALVLDEIINYIQSLQ+QVEFLSMKLEAVNSR+N+ P+ EGFH KD
Sbjct: 121 ILQDLVPGCNKVIGKALVLDEIINYIQSLQQQVEFLSMKLEAVNSRINVNPSFEGFHSKD 180

Query: 235 LGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           LG Q  D  GMIFGSQTAREYAQG   +WL M VGG+F+RAT
Sbjct: 181 LGLQPIDGAGMIFGSQTAREYAQGLHPEWLQMHVGGNFKRAT 222

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133354|ref|XP_002321546.1| predicted protein [Populus trichocarpa] gi|222868542|gb|EEF05673.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/207 (82%), Positives = 179/207 (86%), Gaps = 4/207 (1%)

Query: 74  RKRRDLSSE-DESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG-SKAEVEASSAAGNKP 131
           RK RD SSE D+SSK+VSTT+SANDLNDSNGK  K SGS++EN  S+AE EASSAA NK 
Sbjct: 7   RKTRDFSSEKDDSSKMVSTTTSANDLNDSNGKRRKISGSRSENNDSRAETEASSAANNKT 66

Query: 132 AE-SSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK 189
           AE SSKPSEPPK DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCNKVIGK
Sbjct: 67  AEQSSKPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMNMLQDLVPGCNKVIGK 126

Query: 190 ALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGS 249
           ALVLDEIINYIQSLQ QVEFLSMKLEAVNSRMN +PT E  HPKDLG Q F ATGMI G 
Sbjct: 127 ALVLDEIINYIQSLQCQVEFLSMKLEAVNSRMNTSPTTEHLHPKDLGAQPFVATGMISGP 186

Query: 250 QTAREYAQGSQQDWLHMQVGGSFERAT 276
           Q  REY QGSQ +WLHMQVGGSFERAT
Sbjct: 187 QPTREYVQGSQSEWLHMQVGGSFERAT 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456606|ref|XP_002267823.1| PREDICTED: transcription factor bHLH79 isoform 2 [Vitis vinifera]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/287 (66%), Positives = 212/287 (73%), Gaps = 36/287 (12%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGGA-----GDAGLRMGNMGH---GFGESS 52
           MDPPL+NESSFSAANPS+YSLAEIWPFP+N+  A        GLR+ N G     F +SS
Sbjct: 1   MDPPLINESSFSAANPSAYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSS 60

Query: 53  ALRDGSMEESTVTEQSGGGCGRKRR-DLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGS 111
           A RD S++ESTVTEQSG   G ++R D+SSEDESSKIVST SS + +N SNGK MK S +
Sbjct: 61  ANRDVSVDESTVTEQSGSRGGGRKRRDVSSEDESSKIVST-SSGSGMNASNGKRMKISRT 119

Query: 112 KNENG-SKAEVEASSAAGNKPAESSKPSEPPK-DYIHVRARRGQATDSHSLAERARREKI 169
            +ENG SKAE+EASS AG KPAE SKP+E  K DYIHVRARRGQATDSHSLAER      
Sbjct: 120 PDENGGSKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAER------ 173

Query: 170 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEG 229
                           VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN   T+EG
Sbjct: 174 ----------------VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--HTVEG 215

Query: 230 FHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
           F  KDLG Q FDA  MI+GSQ  REYAQGSQ +WLHMQVGGS ERA+
Sbjct: 216 FPLKDLGVQTFDAAAMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339716200|gb|AEJ88339.1| putative MYC protein [Tamarix hispida]

 Score =  326 bits (836), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 195/311 (62%), Positives = 223/311 (71%), Gaps = 45/311 (14%)

Query: 1   MDPPLVNESSFSAANPSSYSLAEIWPFPINNGG--AGDAGLRMGN----MGHGF------ 48
           MDPPL++ESSFSAANPS   LAEIWPF   +GG  +G   LRMG+    +G  F      
Sbjct: 1   MDPPLISESSFSAANPS---LAEIWPF---SGGDVSGVLDLRMGSGVVAIGGIFGHGGSV 54

Query: 49  ------------GESSALRDGSMEESTVTEQSG----GGCGRKRRDLSSEDESSKIVSTT 92
                       G  +  RDGS+EESTVTEQSG    GGC RKR+D+ SEDESSK+VS T
Sbjct: 55  GGGGFHDGGCSGGVGTINRDGSIEESTVTEQSGSHGGGGC-RKRKDVISEDESSKLVSAT 113

Query: 93  SSANDLNDSNGKWMKTSGSKNEN-GSKAEVEASSAAGNKPAE-SSKPSEPPKDYIHVRAR 150
           +SAN+L + NGK MK SGS+ EN GSK  +EASS+ G K AE SS+P EPPKDYIHVRAR
Sbjct: 114 TSANELTE-NGKRMKISGSRYENNGSKTGIEASSSGGGKSAEKSSQPPEPPKDYIHVRAR 172

Query: 151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 210
           RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL
Sbjct: 173 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 232

Query: 211 SMKLEAVNSRMNLTPTIEGFHPKDLGEQA---FDATGMIFGSQTAREYAQGSQ--QDWLH 265
           SMKLE VNS +N  P I  F  KD+ + A   F+A  M+F SQ+AR +    Q   +WL 
Sbjct: 233 SMKLEVVNSGVN--PAINCFPSKDVNQLAPTTFEAAAMMFASQSARGFEPAPQPHPEWLR 290

Query: 266 MQVGGSFERAT 276
           M +GGS +R T
Sbjct: 291 MHLGGSLDRGT 301

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2172209	281	AT5G62610 "AT5G62610" [Arabido	0.989	0.971	0.545	1.1e-66
UNIPROTKB|Q84T08	265	OSJNBa0087C10.10 "BHLH transcr	0.887	0.924	0.554	7.1e-61
UNIPROTKB|Q69WS3	268	OJ1118_E12.15 "Putative bHLH p	0.804	0.828	0.513	9.5e-50
TAIR|locus:2202867	343	BPEp "AT1G59640" [Arabidopsis	0.728	0.586	0.554	5e-44
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.329	0.199	0.774	3.5e-38
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.869	0.560	0.417	8.9e-38
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.800	0.459	0.404	1.5e-35
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.608	0.452	0.528	3.1e-35
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.731	0.462	0.452	5.1e-35
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.800	0.545	0.412	2.2e-34

TAIR|locus:2172209 AT5G62610 "AT5G62610" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 155/284 (54%), Positives = 183/284 (64%)

Query:     1 MDPPLVNEXXXXXXXXXXXXLAEIWPFPINNGGAGDAGLRMG-NMGHGF--GESSALRDG 57
             MDPPLVN+            L+EIWPFP+N+  A  +GLR+  N G  F   E S  +D 
Sbjct:     1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVND--AVRSGLRLAVNSGRVFTRSEHSGNKDV 58

Query:    58 SM-EESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENG 116
             S  EESTVT+ + G   RK RDL+SED+SSK+VS++SS N+L +S  K  K  GS++ NG
Sbjct:    59 SAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLCGSESGNG 118

Query:   117 S---KAEVEASSAAGNXXXXXXXXXXXX-XDYIHVRARRGQATDSHSLAERARREKISER 172
                 + E E SS  G               DYIHVRARRGQATD HSLAERARREKISE+
Sbjct:   119 DGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEK 178

Query:   173 MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHP 232
             M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VNS  +  PTI  F  
Sbjct:   179 MTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPS 238

Query:   233 KDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 276
              DLG    D    I+  Q A E  + SQ +WLHMQV G+F R T
Sbjct:   239 GDLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q84T08 OSJNBa0087C10.10 "BHLH transcription factor, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 148/267 (55%), Positives = 177/267 (66%)

Query:    22 AEIWPFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCG---RKRRD 78
             AE+W  P   GG G  G   G  G G  E++A   G  E+S  +   GGG G   R++R+
Sbjct:     9 AELWRTPYLGGGGGGGG---G--GRGL-EAAA--SGVTEQSNGSRGGGGGGGAGRRRQRE 60

Query:    79 LSS-EDESSKIVSTTSSAN---DLNDSNGKWMKTSGSKNENGS---KAEVEASSAAGNXX 131
               + ED+SS+IVST+       DL DS  K  K S S  +N S   +AE ++ +A+ +  
Sbjct:    61 APALEDDSSRIVSTSGGGGGGQDLTDSEAKRFKASKSSGDNSSLRTEAETDSRNASKSGD 120

Query:   132 XXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 191
                        DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 
Sbjct:   121 QNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAS 180

Query:   192 VLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFD-ATGMIFGSQ 250
             VLDEIINYIQ+LQRQVEFLSMKLEAVN+ +N    IE F PKD G Q ++ A G+ F  Q
Sbjct:   181 VLDEIINYIQALQRQVEFLSMKLEAVNAHVN--NGIEAFPPKDFGAQVYNTAPGLTFDPQ 238

Query:   251 TAREYAQGSQ-QDWLHMQVGGSFERAT 276
             T REYAQGS   +WLHMQ+GG++ER T
Sbjct:   239 TPREYAQGSTPSEWLHMQIGGTYERVT 265

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69WS3 OJ1118_E12.15 "Putative bHLH protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 133/259 (51%), Positives = 156/259 (60%)

Query:    46 HGFGESSALRD-GSMEESTVTEQSGGGCGRKR--RDLSSEDES-SKIVSTTSSAN----- 96
             H F  SS + D GS        + GGG GR+R   D   ED+  SK+VST++++      
Sbjct:    19 HHFEASSVVTDQGS------GSRGGGGSGRRRPRSDAGPEDDDLSKVVSTSAASGGGGGG 72

Query:    97 --DLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXX----XXDYIHVRAR 150
               D +    K +K   S ++N S    EA + +GN                 DYIHVRAR
Sbjct:    73 GQDSDAPEAKRLKPMKSSDKNDS-LRTEAGTDSGNSSKAADKNATPPEPPKQDYIHVRAR 131

Query:   151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF- 209
             RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA VLDEIINYIQSLQ QVEF 
Sbjct:   132 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQVEFM 191

Query:   210 -----------LSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFD-ATGMIFGSQTAREYAQ 257
                        LSMKLEAVNS M     I  F  KD G Q ++ A G+ F  QT RE+AQ
Sbjct:   192 FKYLIELFLQFLSMKLEAVNSHM--INGIVAFPSKDFGAQPYNTAAGLTFDPQTTREFAQ 249

Query:   258 GSQQDWLHMQVGGSFERAT 276
             GS  +WLHMQ+G ++ER T
Sbjct:   250 GSTSEWLHMQIGNAYERVT 268

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2202867 BPEp "AT1G59640" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 123/222 (55%), Positives = 141/222 (63%)

Query:    21 LAEIWPFPINN-GGAGDAGLRMGNMGHGFGES---SALRDGSMEESTVTEQS--GGGCGR 74
             LAEIW FP+N    AGD+  R     + FG++   +A        S    Q+   G  G 
Sbjct:    15 LAEIWQFPLNGVSTAGDSSRRSFVGPNQFGDADLTTAANGDPARMSHALSQAVIEGISGA 74

Query:    75 -KRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXX 133
              KRR+   E +S+KIVST  +      S G+  +    +  +G KAE E+    G     
Sbjct:    75 WKRRE--DESKSAKIVSTIGA------SEGENKRQKIDEVCDG-KAEAES---LGTETEQ 122

Query:   134 XXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVL 193
                      DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVL
Sbjct:   123 KKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVL 182

Query:   194 DEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 235
             DEIINYIQSLQRQVEFLSMKLEAVNSRMN  P IE F PK++
Sbjct:   183 DEIINYIQSLQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=IMP

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 72/93 (77%), Positives = 82/93 (88%)

Query:   143 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 202
             DYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QS
Sbjct:   254 DYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQS 313

Query:   203 LQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 235
             LQRQVEFLSMKL +VN+R++    ++    KD+
Sbjct:   314 LQRQVEFLSMKLSSVNTRLDFN--MDALLSKDI 344

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 106/254 (41%), Positives = 136/254 (53%)

Query:    26 PFPINNGGAGDA--GLRMGNMGH----GFGESSALRDGSMEESTVTEQSGGGCGRKRRDL 79
             P+   +   GDA  G   G M H    G  ++        +E   +E +GG C  K  D 
Sbjct:   122 PYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDS 181

Query:    80 SSEDESSKIVSTTS--SANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXX 137
                   ++++ T    S+N  +DS  + +  S  K E  S A      + G         
Sbjct:   182 KKRRRPNEVMGTDQVHSSNLPSDSANESVH-SKDKGEESSPATTNGGKSKGKGAKETSES 240

Query:   138 XXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 197
                  +YIHVRARRGQAT+SHSLAER RREKISERMK+LQDLVPGC+KV GKA++LDEII
Sbjct:   241 QKE--EYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEII 298

Query:   198 NYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGE-QAFDATGMIFGSQTAREYA 256
             NY+QSLQRQVEFLSMKL  VN R++L   IEG   KDL       ++ + F  +      
Sbjct:   299 NYVQSLQRQVEFLSMKLATVNPRLDLN--IEGLLSKDLLRFPGVPSSSIGFSPEMMHPQL 356

Query:   257 QGSQQDWLHMQVGG 270
             Q SQ   +H    G
Sbjct:   357 QLSQPGLIHGGTAG 370

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 95/235 (40%), Positives = 132/235 (56%)

Query:    27 FPINNGGAGDAGLRMGNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESS 86
             F + + GA  A   M  +G+   ESS + D +   + +  +       ++R  S + +  
Sbjct:   152 FGLPDAGAAGASKEM-ELGNTRDESS-VSDPAPGGAEIPPKGASDGNARKRKASGKGKGK 209

Query:    87 KIVSTTSSANDLNDSNGKWMKTSGSKN----ENGSKAEVEASSAAGNXXXXXXXXXXXX- 141
                 +TS+A +  DS+GK  K++   N    EN  K +   S++                
Sbjct:   210 DSPMSTSAAKE--DSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKP 267

Query:   142 ----XDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 197
                  DYIHVRARRG+ATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA++LDEII
Sbjct:   268 PEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEII 327

Query:   198 NYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTA 252
             NY+QSLQRQVEFLSMKL  VN +++    +     KD+ +         F  +T+
Sbjct:   328 NYVQSLQRQVEFLSMKLATVNPQLDFN-NLPNLLAKDMHQSCSPLQSSHFPLETS 381

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 93/176 (52%), Positives = 112/176 (63%)

Query:    50 ESSALRDGSMEESTVTEQSGGGCGRKRRDLSSED--ESSKIVSTTSSANDLNDSNG--KW 105
             +SS L   S+ +   T +S     RKR+ + S +  ES    S T+S + ++  NG  K 
Sbjct:    94 KSSLLDPDSVSDRVHTTKSNS---RKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKG 150

Query:   106 MKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERAR 165
              K S       SK  VE   + G+             DYIHVRARRGQATDSHSLAERAR
Sbjct:   151 GKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPK-DYIHVRARRGQATDSHSLAERAR 209

Query:   166 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221
             REKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct:   210 REKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 96/212 (45%), Positives = 121/212 (57%)

Query:    42 GNMGHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDS 101
             G    G GE++   D S +E ++  ++GG    +   +S    S K   +       +  
Sbjct:   153 GEKQQGDGETTHAVDSSSKELSMPGRNGGAGHDEGTRVSC---SKKRKRSGQDGGVKHAE 209

Query:   102 NGKWMKTSGS--KNENGSKAEVEASSAAGNXXXXXXXXXXXXX---DYIHVRARRGQATD 156
              G+ + T GS  KNE+  K E + SS A                  DYIHVRARRGQAT+
Sbjct:   210 GGEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATN 269

Query:   157 SHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEA 216
             SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQRQVEFLSMKL +
Sbjct:   270 SHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAS 329

Query:   217 VNSRMNLTPTIEGFHPKDLGEQAFDATGMIFG 248
             VN  ++    IE    KD+ +         FG
Sbjct:   330 VNPTLDFN--IERILSKDIFQCRGTTASSAFG 359

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 103/250 (41%), Positives = 140/250 (56%)

Query:    32 GGAGDAGL------RMGNM-GHGFGESSALRDGSMEESTVTEQSGGGCGRKRRDLSSEDE 84
             GGAG AGL        G+  G G  E+S++ D +   S+  + +     +KR+  ++   
Sbjct:    76 GGAG-AGLFGMPPPAPGDFAGGGSREASSVSDPA---SSAMKDAAANA-KKRKSTAAAAA 130

Query:    85 SSKIVSTTSSANDLNDSNGKWMKTSGSKNEN---------GSKAEVEASSAAGNXXXXXX 135
             ++K         +  +S+GK  KT   + E+         GS + VE     G       
Sbjct:   131 AAKGKGKEPPVGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDGGGGGQKQGKGK 190

Query:   136 XXXXXX--XDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVL 193
                      DY+HVRARRGQATDSHSLAER RRE+IS+RMK+LQDLVPGCNKVIGKAL+L
Sbjct:   191 NAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALML 250

Query:   194 DEIINYIQSLQRQVEFLSMKLEAVNSR--MNLTPTIEGFHPKDLGEQAFDATGMIFGSQT 251
             DEIINY+QSLQRQVEFLSMKL  VN     NL PT+     KD+ +    +   +F  ++
Sbjct:   251 DEIINYVQSLQRQVEFLSMKLATVNPLDFSNL-PTLL---QKDMFQACGPSASSVFSLES 306

Query:   252 AREYAQGSQQ 261
             +    + ++Q
Sbjct:   307 SNSAFRFAEQ 316

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LV17	BH079_ARATH	No assigned EC number	0.5894	0.9855	0.9679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
smart00353	53	smart00353, HLH, helix loop helix domain	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	9e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	9e-09

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 159 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 208
           +  ER RR KI+E    L+ L+P    NK + KA +L   I YI+SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 53.4 bits (129), Expect = 9e-10
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVE 208
           R    ++H+L ER RRE+I++    L+ L+P       + KA +L + ++YI+SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 50.2 bits (121), Expect = 9e-09
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 157 SHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQ 204
           +H+  ER RR++I++  + L++L+P      + KA +L   I YI+ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.43
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.36
smart00353	53	HLH helix loop helix domain.	99.36
KOG1318	411	consensus Helix loop helix transcription factor EB	99.2
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.11
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.61
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.36
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.36
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.14
PLN03217	93	transcription factor ATBS1; Provisional	98.03
KOG0561	373	consensus bHLH transcription factor [Transcription	97.73
KOG3582	856	consensus Mlx interactors and related transcriptio	97.58
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.52
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.08
KOG3910	632	consensus Helix loop helix transcription factor [T	96.3
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	92.24
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	88.29
KOG3898	254	consensus Transcription factor NeuroD and related	88.15
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	83.85

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.43  E-value=1.7e-13  Score=97.61  Aligned_cols=54  Identities=37%  Similarity=0.643  Sum_probs=48.7

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~--K~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      +..|+..||+||++||+.|..|+.+||.+.  ..++|++||+.||+||++|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            457999999999999999999999999982  335999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.36  E-value=1.1e-12  Score=93.48  Aligned_cols=49  Identities=37%  Similarity=0.739  Sum_probs=44.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ  204 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~----~K~~dKAsIL~eAIdYIk~LQ  204 (276)
                      ..|+..||+||++||+.|..|+.+||.+    ....+|++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            4699999999999999999999999987    223699999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>smart00353 HLH helix loop helix domain

Probab=99.36  E-value=2.1e-12  Score=90.56  Aligned_cols=49  Identities=41%  Similarity=0.605  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 023847          159 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       159 s~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      +..||+||++||+.|..|+.|||.+   .+. +|++||+.||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999964   354 999999999999999999886

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.20  E-value=2.1e-11  Score=119.08  Aligned_cols=65  Identities=34%  Similarity=0.560  Sum_probs=54.3

Q ss_pred             cccccccCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHH
Q 023847          144 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       144 ~~~~R~rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~---~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      ....-+|-+++++.|+.+|||||++||++|++|..|||.|+..   ..|..||..++|||+.||+..+
T Consensus       223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            3344455667779999999999999999999999999999532   3799999999999988887544

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.11  E-value=1.4e-10  Score=103.70  Aligned_cols=67  Identities=30%  Similarity=0.528  Sum_probs=58.7

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCNKV------IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  221 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~------~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~  221 (276)
                      +..|.-+||+||+-||..+..|+.|||.|...      ..||.||+++|+||.+|+.+...-+.++.+|+...
T Consensus        63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v  135 (229)
T KOG1319|consen   63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV  135 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999987533      38999999999999999998888888887777653

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.61  E-value=1.7e-08  Score=93.31  Aligned_cols=52  Identities=33%  Similarity=0.480  Sum_probs=45.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCCCC-------CChhhHHHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCNKV-------IGKALVLDEIINYIQSLQRQV  207 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~K~-------~dKAsIL~eAIdYIk~LQ~qV  207 (276)
                      ..|-+.||+||.+||+.|.+|++||+.+-+.       ++||.||+.||+|++.||...
T Consensus        34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            3567999999999999999999999965332       499999999999999999753

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.36  E-value=4.4e-07  Score=95.24  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ  206 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~---K~~dKAsIL~eAIdYIk~LQ~q  206 (276)
                      +++|+.+||+||+++|.-|.+|.+|||.|.   .++||-+||.+||++|+.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            578999999999999999999999999997   3469999999999999999885

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.36  E-value=1e-06  Score=80.94  Aligned_cols=58  Identities=28%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHH
Q 023847          154 ATDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQVEFLS  211 (276)
Q Consensus       154 a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~--dKAsIL~eAIdYIk~LQ~qV~~Le  211 (276)
                      ++..|+..||+||..|+++|..|+.+||......  ..++||++|++||+.|+.+.....
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~  118 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ  118 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence            4567999999999999999999999999765432  258999999999999887654444

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.14  E-value=1.3e-06  Score=92.49  Aligned_cols=66  Identities=29%  Similarity=0.509  Sum_probs=58.4

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023847          153 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN  218 (276)
Q Consensus       153 ~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln  218 (276)
                      ..+.+|+++|||-|..||++|.+|+++||+..-...|..+|..||+||++|+...+.|+.+.+.+.
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            457899999999999999999999999998765459999999999999999998888877666554

>PLN03217 transcription factor ATBS1; Provisional

Probab=98.03  E-value=1.6e-05  Score=63.54  Aligned_cols=54  Identities=35%  Similarity=0.531  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847          166 REKISERMKILQDLVPGCN------KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  220 (276)
Q Consensus       166 RekIne~~~~LrsLVP~~~------K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~  220 (276)
                      -+.|++.+..||.|+|...      +. +-+-||++|+.||+.|+++|..|.+.+.+|-..
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t   78 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN   78 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999542      33 678899999999999999999999999888654

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.73  E-value=3.1e-05  Score=73.99  Aligned_cols=50  Identities=28%  Similarity=0.482  Sum_probs=44.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPG--CNKVIGKALVLDEIINYIQSLQRQ  206 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~--~~K~~dKAsIL~eAIdYIk~LQ~q  206 (276)
                      +.-+..||+|=.-||-.|..|+.|+|.  ..|+ +||.||+.+.+||.+|+.+
T Consensus        62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~  113 (373)
T KOG0561|consen   62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH  113 (373)
T ss_pred             HhhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence            456789999999999999999999995  4566 9999999999999988764

>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]

Probab=97.58  E-value=3.2e-05  Score=80.25  Aligned_cols=85  Identities=21%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCC----CChhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccC
Q 023847          154 ATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQS-------LQRQVEFLSMKLEAVNSRMN  222 (276)
Q Consensus       154 a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~----~dKAsIL~eAIdYIk~-------LQ~qV~~Le~~le~ln~~~~  222 (276)
                      ....|+.+|++||++|+-+|..|.+++.+...+    +.++.-|+++++||..       ++++...|..+++++++-++
T Consensus       651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~~  730 (856)
T KOG3582|consen  651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVIS  730 (856)
T ss_pred             CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHHH
Confidence            346799999999999999999999999877654    4566779999999954       45566777788888888775


Q ss_pred             CCCCccCCCCCCCCcCCCCCCccccccc
Q 023847          223 LTPTIEGFHPKDLGEQAFDATGMIFGSQ  250 (276)
Q Consensus       223 ~~p~~~~f~~~~~~q~~~~a~g~~~~~q  250 (276)
                      .            |+++.+++|+|....
T Consensus       731 ~------------~~q~p~aT~vp~~r~  746 (856)
T KOG3582|consen  731 A------------CQQPPPATGVPGTRL  746 (856)
T ss_pred             H------------hhcCCCccCCcchhh
Confidence            5            899999999998887

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.52  E-value=0.00024  Score=66.54  Aligned_cols=55  Identities=25%  Similarity=0.356  Sum_probs=47.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHh-cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023847          159 SLAERARREKISERMKILQD-LVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMK  213 (276)
Q Consensus       159 s~aERkRRekIne~~~~Lrs-LVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~  213 (276)
                      .+-||+|=.|+||.|.+|+. -+++-+...-|..||..||+||..||.-++++...
T Consensus       123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            48899999999999999976 45666666799999999999999999988887643

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.08  E-value=0.00048  Score=62.23  Aligned_cols=58  Identities=22%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023847          157 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMKL  214 (276)
Q Consensus       157 ~Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~l  214 (276)
                      .++..||.|=..+|..|..||.+||..   .|..+|..+|.-||.||++|+.-++.-+..+
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            356779999999999999999999943   3445999999999999999999887766433

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=96.30  E-value=0.007  Score=61.50  Aligned_cols=55  Identities=27%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQVEFL  210 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~---~~K~~dKAsIL~eAIdYIk~LQ~qV~~L  210 (276)
                      ...+..||-|=..||+.|++|-.|.--   ..|.--|..||..||.-|-.|++||++-
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            568899999988999999999998642   2222368999999999999999999864

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=92.24  E-value=0.076  Score=46.92  Aligned_cols=49  Identities=24%  Similarity=0.395  Sum_probs=43.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR  205 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~  205 (276)
                      ..|++-||+|-..+|+.|..||.++|..  .|. +|.-.|+-|-.||-+|=+
T Consensus        80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence            4699999999999999999999999964  555 999999999999988854

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=88.29  E-value=0.34  Score=51.29  Aligned_cols=47  Identities=28%  Similarity=0.355  Sum_probs=38.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQS  202 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~---K~~dKAsIL~eAIdYIk~  202 (276)
                      +.-.-+.|.||.|-|+-|.+|..+||--.   -..|||+|+.-||-|++.
T Consensus        48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            34447889999999999999999999332   225999999999999963

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=88.15  E-value=1.1  Score=41.81  Aligned_cols=47  Identities=26%  Similarity=0.435  Sum_probs=40.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 023847          158 HSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQR  205 (276)
Q Consensus       158 Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~  205 (276)
                      =+.-||+|=-.+|+.|+.|+.+||..   .|+ .|+.+|.-+-+||..|++
T Consensus        76 aNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~  125 (254)
T KOG3898|consen   76 ANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE  125 (254)
T ss_pred             ccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence            45779999899999999999999943   344 999999999999988875

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=83.85  E-value=1.2  Score=45.16  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=38.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHH
Q 023847          159 SLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSL  203 (276)
Q Consensus       159 s~aERkRRekIne~~~~LrsLVP~~~---K~~dKAsIL~eAIdYIk~L  203 (276)
                      .-+.|.||++-|-.|.+|..|+|-..   .++||++|+.-|.-|||.-
T Consensus         6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            35789999999999999999999442   3369999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	7e-21
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	3e-10
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-09
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	6e-09
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
4f3l_A	361	Mclock, circadian locomoter output cycles protein	1e-05
1a0a_A	63	BHLH, protein (phosphate system positive regulator	3e-05
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	4e-04
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	6e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 83.2 bits (206), Expect = 7e-21
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 150 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 209
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 210 LSMKLEAVNSRMN 222
           L  +  ++ + ++
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 156 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 208
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 156 DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQR-------QV 207
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R        +
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

Query: 208 EFLSMKLEAVNSRMN 222
           + L  +   +  ++ 
Sbjct: 64  DDLKRQNALLEQQVR 78

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 135 SKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVL 193
           +   E   D      +R      H+  ER RR+ I +    L+D VP        +A +L
Sbjct: 1   NDDIEVESD----ADKR----AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQIL 52

Query: 194 DEIINYIQSLQRQVEFLSMKLEA 216
           D+   YIQ ++R+       ++ 
Sbjct: 53  DKATEYIQYMRRKNHTHQQDIDD 75

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 148 RARRGQATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 205
             +R     +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+Q 
Sbjct: 4   NVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 206 QVEFLSMKLEAVNSRMN 222
           + + L  + + +  R  
Sbjct: 60  EEQKLISEEDLLRKRRE 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 83/248 (33%)

Query: 77  RDLSSED--ESSKIVSTTSSANDL----NDSNGK----WMKTSGSKNENGSKAEVEASSA 126
            +   +D  +  K + +    + +    +  +G     W   S  K E   +  VE    
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS--KQEEMVQKFVE-EVL 87

Query: 127 AGNKP-------AESSKPSEPPKDYIHVRARRGQATDSHSLAER--ARREKISERMKILQ 177
             N          E  +PS   + YI  R R     D+   A+   +R +   +  + L 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 178 DLVPGCNKVI------GK----ALVL------------------------DEIINYIQSL 203
           +L P  N +I      GK      V                         + ++  +Q L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 204 QRQVE--FLSMKLEAVNSRMNLTPTIEGF--------HPKDL--------GE--QAFDAT 243
             Q++  + S    + N ++ +               +   L         +   AF+  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-- 263

Query: 244 GMIFGSQT 251
                 + 
Sbjct: 264 ---LSCKI 268

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 13/121 (10%)

Query: 157 SHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEA 216
           S + +E+ RR++ +  +K L  ++PG  + + K+ VL + I+++    R+ +  + + +A
Sbjct: 15  SRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFL----RKHKETTAQSDA 70

Query: 217 VNSRMNLTPT-IEGFHPKDLGEQAFD-------ATG-MIFGSQTAREYAQGSQQDWLHMQ 267
              R +  PT +       L  +A D         G +I+ S++     +    D +   
Sbjct: 71  SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQS 130

Query: 268 V 268
           +
Sbjct: 131 I 131

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 157 SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE 208
           SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 16/76 (21%)

Query: 157 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINY--------------I 200
           +H+  E+ RR  +   ++ L+ LVP    +       +L +   +              I
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 201 QSLQRQVEFLSMKLEA 216
             LQR+   L  +LE 
Sbjct: 64  DQLQREQRHLKRQLEK 79

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 148 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG---KALVLDEIINYIQSLQ 204
           + R   A ++HS  E+ RR+K++  +  L  LVP CN +     K  VL   + ++    
Sbjct: 7   QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHM---- 62

Query: 205 RQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDA--------TG-MIFGSQTAREY 255
           + +   +               +     K L  +A D          G ++F S++  + 
Sbjct: 63  KTLRGAT---NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKI 119

Query: 256 AQGSQQDWLHMQV 268
              SQ D +   +
Sbjct: 120 LNYSQNDLIGQSL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.72
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.7
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.6
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.6
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.59
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.59
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.58
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.54
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.53
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.46
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.43
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.08
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.04
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.99
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.91
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.9
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.57
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.13

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.72  E-value=3.1e-18  Score=131.91  Aligned_cols=68  Identities=26%  Similarity=0.400  Sum_probs=62.3

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847          154 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  221 (276)
Q Consensus       154 a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~  221 (276)
                      .+..|+.+||+||++||++|..|++|||++...++||+||++||+||++||.+++.|+.+++.|...+
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   73 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999844459999999999999999999999999999987765

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.70  E-value=2.3e-17  Score=135.09  Aligned_cols=74  Identities=32%  Similarity=0.473  Sum_probs=51.1

Q ss_pred             CCCccccccccCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023847          140 PPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVEFLSMK  213 (276)
Q Consensus       140 p~~d~~~~R~rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~---~dKAsIL~eAIdYIk~LQ~qV~~Le~~  213 (276)
                      |..++.+...+++++++.|+++||+||++||++|..|++|||.|.+.   ++|++||++||+||++||.+++.|+..
T Consensus        13 ~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           13 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788888889999999999999999999999999999998642   589999999999999999999999865

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.60  E-value=4.3e-16  Score=118.02  Aligned_cols=59  Identities=22%  Similarity=0.427  Sum_probs=52.8

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 023847          153 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS  211 (276)
Q Consensus       153 ~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le  211 (276)
                      +.+.+|+++||+||++||++|.+|++|||++...++|++||++||+||++||.++..|+
T Consensus         7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            34568999999999999999999999999765335999999999999999999998875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.60  E-value=1.6e-16  Score=117.39  Aligned_cols=54  Identities=31%  Similarity=0.458  Sum_probs=48.2

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~K------~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      +++|+++||+||++||..|..|++|||.+.+      ..+||+||+.||+||++||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            5789999999999999999999999997632      24799999999999999998764

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.59  E-value=9.8e-16  Score=116.93  Aligned_cols=64  Identities=28%  Similarity=0.493  Sum_probs=59.0

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS  219 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~  219 (276)
                      +..|+..||+||.+||+.|..|++|||.+  .|. +|++||..||+||++||.+++.|+.+++.|..
T Consensus        13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~   78 (80)
T 1hlo_A           13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36799999999999999999999999987  454 99999999999999999999999999988764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.59  E-value=3.6e-16  Score=114.80  Aligned_cols=56  Identities=27%  Similarity=0.428  Sum_probs=50.0

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 023847          153 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       153 ~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K-----~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      ..+..|+.+||+||++||+.|..|++|||.|..     .++|++||++||+||++||.+++
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            345789999999999999999999999999862     24999999999999999998764

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.58  E-value=1.7e-15  Score=116.11  Aligned_cols=64  Identities=28%  Similarity=0.502  Sum_probs=56.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  220 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~  220 (276)
                      ..|+..||+||++||+.|..|+++||.+  .|. +|++||.+||+||++|+.+++.|+.+++.|...
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~   69 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ   69 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999985  454 999999999999999999888888777776543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.54  E-value=1e-14  Score=113.90  Aligned_cols=62  Identities=26%  Similarity=0.420  Sum_probs=54.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN  218 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~---K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln  218 (276)
                      ..|+.+||+||++||++|..|+++||.+.   |. +|++||.+||+||++|+.+++.|..+++.+.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~   72 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLR   72 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763   55 9999999999999999999888776665553

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.53  E-value=1.1e-15  Score=116.09  Aligned_cols=55  Identities=33%  Similarity=0.529  Sum_probs=48.6

Q ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 023847          150 RRGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR  205 (276)
Q Consensus       150 rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~----~K~~dKAsIL~eAIdYIk~LQ~  205 (276)
                      +..+++++|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            3444567899999999999999999999999987    455 999999999999999974

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=8.9e-14  Score=106.95  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  220 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~  220 (276)
                      ..|+..||+||..||+.|..|+++||.+   .| .+|+.||.+||+||+.|+.+.+.|..+++.|...
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e   69 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999965   34 4899999999999999999999888887776543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.43  E-value=6e-14  Score=107.18  Aligned_cols=57  Identities=28%  Similarity=0.372  Sum_probs=48.5

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS  211 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~~Le  211 (276)
                      +..|+..||+||.+||++|..|+.+||.+   .|..+|+.||..||+||++||+++++++
T Consensus         6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35799999999999999999999999953   3333799999999999999999999874

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.08  E-value=3.7e-11  Score=90.05  Aligned_cols=53  Identities=26%  Similarity=0.418  Sum_probs=46.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~-~K~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      ..|+..||+|+..||+.|..|+++||.. ++.++|+.||..||+||.+||+.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4699999999999999999999999964 2335999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.04  E-value=2.4e-10  Score=83.54  Aligned_cols=52  Identities=23%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 023847          157 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       157 ~Hs~aERkRRekIne~~~~LrsLVP~~~--K~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      .|+..||+|+..||+.|..|+.+||...  +..+|+.||..||+||..||+.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999653  335999999999999999998764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.99  E-value=3.6e-10  Score=104.56  Aligned_cols=57  Identities=21%  Similarity=0.399  Sum_probs=41.7

Q ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 023847          151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV  207 (276)
Q Consensus       151 r~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV  207 (276)
                      ....+.+|+.+||+||++||+.|.+|++|||.....+||++||+.||+||+.|+...
T Consensus         9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A            9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            344557899999999999999999999999944333499999999999999998753

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.91  E-value=4.5e-10  Score=105.31  Aligned_cols=56  Identities=30%  Similarity=0.450  Sum_probs=48.2

Q ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 023847          150 RRGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQRQ  206 (276)
Q Consensus       150 rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~----~~K~~dKAsIL~eAIdYIk~LQ~q  206 (276)
                      |.++++++|+.+||+||++||+.|.+|+.|||.    ..|+ ||++||+.||+||+.|+..
T Consensus         9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B            9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            445556889999999999999999999999994    4565 9999999999999999853

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.90  E-value=2.9e-09  Score=82.88  Aligned_cols=50  Identities=30%  Similarity=0.425  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023847          166 REKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVEFLSMKLE  215 (276)
Q Consensus       166 RekIne~~~~LrsLVP~~~K~---~dKAsIL~eAIdYIk~LQ~qV~~Le~~le  215 (276)
                      |.+||++|.+|..|||.++..   .+|++||.+|||||++||.+++.+.++..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~   56 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   56 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999987531   49999999999999999998888876544

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.57  E-value=1.8e-08  Score=75.78  Aligned_cols=45  Identities=24%  Similarity=0.447  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 023847          161 AERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR  205 (276)
Q Consensus       161 aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~  205 (276)
                      -||+|...||+.|..||.+||..  ++.++|..||+.||+||..||.
T Consensus        21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            47888899999999999999965  2335999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.13  E-value=4.8e-06  Score=66.45  Aligned_cols=48  Identities=27%  Similarity=0.414  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 023847          162 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF  209 (276)
Q Consensus       162 ERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~  209 (276)
                      ||.|=..||+.|..|+.+||..  ++..+|..+|..||+||..||+.++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5677788999999999999965  33459999999999999999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-17
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	7e-16
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-15
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-13
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	9e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	1e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-11

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (176), Expect = 4e-17
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 166 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 222
           R  I++++  L+DLV G +  + K+ VL + I+YI+ LQ+    L  +   +     
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 7e-16
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 150 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 209
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 210 LSMKLEAVNSRMN 222
           L  +  ++ + ++
Sbjct: 62  LKQENLSLRTAVH 74

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 4e-15
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 146 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSL 203
           H+  +R     +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 204 QRQVEFLSMKLEAVNSRMN 222
           Q + + L  + + +  R  
Sbjct: 58  QAEEQKLISEEDLLRKRRE 76

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 156 DSHSLAERARREKISERMKILQDLVPGCNKVIG------KALVLDEIINYIQSLQRQVE 208
           +SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (145), Expect = 9e-13
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 157 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE 208
           + ++ ER R  K++E  + L+       N+ + K  +L   I YI+ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 157 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 215
            H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+       ++
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 216 AVNSR 220
            +  +
Sbjct: 65  DLKRQ 69

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 156 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQVE 208
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 157 SHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQVEFLSMKL 214
           +H+  E+ RR  +   ++ L+ LVP            +L +   +I+ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 215 EAVNSRMN 222
           + +     
Sbjct: 64  DQLQREQR 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.53
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.53
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.46
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.46

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.2e-17  Score=122.69  Aligned_cols=67  Identities=27%  Similarity=0.408  Sum_probs=61.5

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  221 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~  221 (276)
                      +..|+.+||+||++||+.|..|++|||++...++|++||.+||+||+.|+.+++.|..+++.+...+
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~   73 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999875569999999999999999999999999998886654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=113.77  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCCC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCNK--VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR  220 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~K--~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~  220 (276)
                      ..|+.+||+||++||+.|..|++|||.+..  .++|++||+.||+||++|+.+++.|..+++.|...
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~   69 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE   69 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999997642  25999999999999999999999999988887654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-15  Score=112.74  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=58.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCCC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCNK--VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  221 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~K--~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~  221 (276)
                      ..|+.+||+||++||+.|..|+++||++..  .++|++||..||+||++|+.+++.|..+++.+....
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~   75 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR   75 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999997532  259999999999999999999999998888776543

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.6e-15  Score=108.33  Aligned_cols=52  Identities=31%  Similarity=0.471  Sum_probs=46.9

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGC-------NKVIGKALVLDEIINYIQSLQRQV  207 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~-------~K~~dKAsIL~eAIdYIk~LQ~qV  207 (276)
                      +..|+.+||+||++||+.|..|++|||++       .| ++|+.||++||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k-~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAA-PSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCC-SCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCccc-ccHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999999999999953       34 499999999999999999876

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.2e-15  Score=108.36  Aligned_cols=56  Identities=29%  Similarity=0.352  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847          166 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM  221 (276)
Q Consensus       166 RekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~  221 (276)
                      |++||++|..|++|||++++.++||+||++||+||++||.+++.|++++..|...+
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875569999999999999999999999999999987755

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5e-15  Score=111.46  Aligned_cols=64  Identities=27%  Similarity=0.469  Sum_probs=56.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS  219 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~-K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~  219 (276)
                      ..|+.+||+||++||+.|..|++|||++. +.++|++||..||+||++|+.+++.|..+++.+..
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~   68 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999753 33599999999999999999999999888777654

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.5e-14  Score=106.11  Aligned_cols=53  Identities=25%  Similarity=0.388  Sum_probs=48.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 023847          156 DSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVE  208 (276)
Q Consensus       156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~-K~~dKAsIL~eAIdYIk~LQ~qV~  208 (276)
                      ..|+..||+||++||+.|..|++|||.+. +.++|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            57999999999999999999999999874 335999999999999999998764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.1e-15  Score=106.30  Aligned_cols=52  Identities=29%  Similarity=0.476  Sum_probs=47.1

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 023847          155 TDSHSLAERARREKISERMKILQDLVPGCN------KVIGKALVLDEIINYIQSLQRQV  207 (276)
Q Consensus       155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~------K~~dKAsIL~eAIdYIk~LQ~qV  207 (276)
                      +..|+.+||+||++||+.|..|++|||.+.      + ++|++||..||+||++||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k-~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSG-QSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTC-CCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCHHHHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999764      4 499999999999999999765