Citrus Sinensis ID: 023851


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHccHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEcccccHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccc
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLsrciyngrleiwpskdwelesiHEFEVLEMIREHISTVIGLrancsvtdswaTTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHlthrnslqfpeawsyglkqnqvvgcvnntqsislgrgtnghelkqenlkcyvmgfdpeTLQRCAKLRSREAVNLVEkhscalfgdgqtglldtdeVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MVLIPVFVGkiaqlkeheCQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGrleiwpskdweLESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
*VLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYK****
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSR******************SIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEEC********************************************************LKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLK**
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAH**********************************************LKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLK*N
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLIPVFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNNTQSISLGRGTNGHELKQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEEYADAVYKLKEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
224069880275 predicted protein [Populus trichocarpa] 0.974 0.978 0.745 1e-113
255580495 408 conserved hypothetical protein [Ricinus 0.963 0.651 0.722 1e-109
225467702 380 PREDICTED: uncharacterized protein LOC10 0.945 0.686 0.660 1e-98
356558985 388 PREDICTED: uncharacterized protein LOC10 0.942 0.670 0.651 1e-93
449464112 388 PREDICTED: uncharacterized protein LOC10 0.945 0.672 0.638 2e-92
356504408 393 PREDICTED: uncharacterized protein LOC10 0.942 0.661 0.636 2e-90
357513325372 hypothetical protein MTR_8g012420 [Medic 0.956 0.709 0.614 1e-89
356566244353 PREDICTED: uncharacterized protein LOC10 0.887 0.694 0.580 3e-83
449527687251 PREDICTED: uncharacterized protein LOC10 0.884 0.972 0.626 8e-83
297833518371 hypothetical protein ARALYDRAFT_896892 [ 0.858 0.638 0.595 4e-82
>gi|224069880|ref|XP_002303068.1| predicted protein [Populus trichocarpa] gi|222844794|gb|EEE82341.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/271 (74%), Positives = 231/271 (85%), Gaps = 2/271 (0%)

Query: 7   FVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELE 66
            + +IA+LKEHECQ AVEDVMYML+LYKFSEIRV LVPKLSRCIYNGRLEI PSKDWELE
Sbjct: 6   MIQRIAELKEHECQVAVEDVMYMLVLYKFSEIRVPLVPKLSRCIYNGRLEIRPSKDWELE 65

Query: 67  SIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASL 126
           SIH FEVLEM+REH+STVIGL+AN SV DSWATTE+QR RLGRVY ASILYGYFLKSASL
Sbjct: 66  SIHSFEVLEMVREHVSTVIGLKANSSVADSWATTEVQRCRLGRVYAASILYGYFLKSASL 125

Query: 127 RYYLEECLASAHQDLHLTHRNSLQFPEAW-SYGLKQNQVVGCVNNTQSISLGRGTNGHEL 185
           R++LE CL   HQD+HL HR++LQFPE+  SYGL  N V G ++N QS S G   N  + 
Sbjct: 126 RHHLEWCLVLPHQDIHLGHRSTLQFPESLPSYGL-TNLVFGHISNKQSTSQGTRLNRPKS 184

Query: 186 KQENLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSS 245
           + E LKCY+MGFD ETLQRCAKL+S+EAVNL+EKHSCALFGD +TG+L+ DEVILTSFSS
Sbjct: 185 EHEKLKCYMMGFDSETLQRCAKLKSKEAVNLIEKHSCALFGDEKTGVLENDEVILTSFSS 244

Query: 246 LKRLVLEAIAFGSFLWDAEEYADAVYKLKEN 276
           LKRLVLEA+AFG FLWD EE  ++VYKLK+N
Sbjct: 245 LKRLVLEAVAFGCFLWDTEEDVNSVYKLKDN 275




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580495|ref|XP_002531072.1| conserved hypothetical protein [Ricinus communis] gi|223529318|gb|EEF31286.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225467702|ref|XP_002272171.1| PREDICTED: uncharacterized protein LOC100251038 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558985|ref|XP_003547782.1| PREDICTED: uncharacterized protein LOC100804253 [Glycine max] Back     alignment and taxonomy information
>gi|449464112|ref|XP_004149773.1| PREDICTED: uncharacterized protein LOC101209314 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356504408|ref|XP_003520988.1| PREDICTED: uncharacterized protein LOC100793365 [Glycine max] Back     alignment and taxonomy information
>gi|357513325|ref|XP_003626951.1| hypothetical protein MTR_8g012420 [Medicago truncatula] gi|355520973|gb|AET01427.1| hypothetical protein MTR_8g012420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356566244|ref|XP_003551344.1| PREDICTED: uncharacterized protein LOC100794032 [Glycine max] Back     alignment and taxonomy information
>gi|449527687|ref|XP_004170841.1| PREDICTED: uncharacterized protein LOC101230760 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297833518|ref|XP_002884641.1| hypothetical protein ARALYDRAFT_896892 [Arabidopsis lyrata subsp. lyrata] gi|297330481|gb|EFH60900.1| hypothetical protein ARALYDRAFT_896892 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2079626368 AT3G07310 "AT3G07310" [Arabido 0.467 0.350 0.720 9.6e-76
TAIR|locus:2152516344 AT5G48590 "AT5G48590" [Arabido 0.463 0.372 0.720 1.8e-70
TAIR|locus:2088490427 AT3G17800 "AT3G17800" [Arabido 0.934 0.604 0.398 1.9e-44
TAIR|locus:2198055423 AT1G48450 "AT1G48450" [Arabido 0.938 0.612 0.402 3.1e-44
TAIR|locus:2031760406 AT1G32160 "AT1G32160" [Arabido 0.927 0.630 0.335 6.5e-35
TAIR|locus:2079626 AT3G07310 "AT3G07310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 495 (179.3 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
 Identities = 93/129 (72%), Positives = 110/129 (85%)

Query:    10 KIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIH 69
             +IA+LKE  C+TAV+D+MYMLI YK+SEIRV LVPKLSRCIYNGRLEIWPSKDWELESI+
Sbjct:   120 RIAELKERYCKTAVQDIMYMLIFYKYSEIRVPLVPKLSRCIYNGRLEIWPSKDWELESIY 179

Query:    70 EFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYY 129
               + LE+I+EH+S VIGLR N  VTD+WATT+IQ+L L +VY ASILYGYFLKSASLR+ 
Sbjct:   180 SCDTLEIIKEHVSAVIGLRVNSCVTDNWATTQIQKLHLRKVYAASILYGYFLKSASLRHQ 239

Query:   130 LEECLASAH 138
             LE  L+  H
Sbjct:   240 LECSLSDIH 248


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
TAIR|locus:2152516 AT5G48590 "AT5G48590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088490 AT3G17800 "AT3G17800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198055 AT1G48450 "AT1G48450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031760 AT1G32160 "AT1G32160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
pfam0554285 pfam05542, DUF760, Protein of unknown function (DU 8e-15
>gnl|CDD|203271 pfam05542, DUF760, Protein of unknown function (DUF760) Back     alignment and domain information
 Score = 67.6 bits (166), Expect = 8e-15
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 64  ELESIHEFEVLEMIREHISTVIGLRANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKS 123
            L      EVLE +R ++S ++G            T +  R  L ++  +S++ GYFL++
Sbjct: 17  RLADSASPEVLEAMRRNVSGLLGSL---PSDHFEVTIQTSRENLAQLLASSMMTGYFLRN 73

Query: 124 ASLRYYLEECL 134
           A  R  LE  L
Sbjct: 74  AEQRLELERSL 84


This family contains several uncharacterized plant proteins. Length = 85

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
PF0554286 DUF760: Protein of unknown function (DUF760); Inte 99.94
PF0554286 DUF760: Protein of unknown function (DUF760); Inte 97.77
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins Back     alignment and domain information
Probab=99.94  E-value=3.7e-27  Score=184.51  Aligned_cols=84  Identities=29%  Similarity=0.400  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCcccccCCccccCCcchhhhhccCchHHHHHHHHHHHHhh
Q 023851            6 VFVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVI   85 (276)
Q Consensus         6 vLyrRIAevKe~Err~alEdImY~lIv~KF~~~~V~mvP~ls~~~~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~vL   85 (276)
                      +||++|++++. |+..+++|                                          +|||||+|+|++||.++|
T Consensus         2 ~L~~yi~~l~p-e~~~~l~~------------------------------------------~~s~ev~e~m~~~v~~ll   38 (86)
T PF05542_consen    2 DLLQYIQSLKP-ERIQQLSE------------------------------------------PASPEVLEAMKQHVSGLL   38 (86)
T ss_pred             hHHHHHHHCCH-HHHHHhhc------------------------------------------cCCHHHHHHHHHHHHHHH
Confidence            58899999999 99988888                                          899999999999999999


Q ss_pred             ccc-cCCCCCCCcceEeechhhhhhHHHHHhhhhHhhhhhhhHhHHHHHHh
Q 023851           86 GLR-ANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLA  135 (276)
Q Consensus        86 G~~-~~~~~~~~~~~~~isr~~Lg~vyAAsmM~GYFLr~~eqR~~LE~sl~  135 (276)
                      |++ |++.|+   ++++++|++||+||+++||+|||||++|+|++||++|+
T Consensus        39 G~l~p~~~~~---~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~Le~sL~   86 (86)
T PF05542_consen   39 GNLSPSDQFN---VTIQTSRENLAQLLAWSMMTGYFLRNAEQRLELERSLK   86 (86)
T ss_pred             cCCCCcccCc---ceeEECHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            999 877655   79999999999999999999999999999999999985



>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00