Citrus Sinensis ID: 023866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHcccEEEccHHHHHccccEEEEEEcccccHHHHHHHHHcccccccEEEEEcccccHHHHHHHHcccccEEEEccccHHHHHcccEEEcccccccHHHHHHHHHHHHccccEEEEccccccEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccHHHHHHHHHHHHcccccHHHEEEccccHHHHHHHHHHcccEEcccHHHHHHHccEEEEEEccccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHcccccEEEEEcccccHEHcccEEEEcccccccHHHHHHHHHHHHHcccEEEEcHHHHHEHEcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdafpipaesFILGFIGAGKMAESIAKGvaksgvlppdrictavhsnlkrrdAFESIGVkvlsdnnavveYSDVVVFSVKPQVDKAAVITEEAFGfcccrseierpsglqrWSRWVEWTGHSRFirvmpntpsavgEAATVmslggtateedGELIGKLFGSVGKIWRADEKLFDaitglsgsgpAYIFLAIEALAdggvaaglPRELALGLASQTVLGAASmvtksgkhpgqlkddvaspggttiAGIHELEKSGFRGILMNAVVAAAKRSRELS
Flexible Loop (DISEMBL)
MDAFPIPAESFILGFIGAGKMAESIAKGVaksgvlppdRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEierpsglqrwsRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVtksgkhpgqlkddvasPGGTTIAGIHEleksgfrgILMNAVVAAakrsrels
Low Complexity Region (SEG)
MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAvveysdvvvfsvKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS
Disordered region (IsUnstruct)
******PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAA***********************TIAGIHELEKSGFRGILMNAVVA*********
Disordered Region (DISOPRED)
*********SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL*
Disordered Region (DISEMBL)
MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVA*********
Disordered Region (DISPRO)
*DAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
P54904	276	Pyrroline-5-carboxylate r	yes	no	0.992	0.992	0.724	1e-109
P17817	274	Pyrroline-5-carboxylate r	yes	no	0.992	1.0	0.706	1e-106
Q04708	273	Pyrroline-5-carboxylate r	N/A	no	0.989	1.0	0.710	1e-105
O04016	278	Pyrroline-5-carboxylate r	N/A	no	0.971	0.964	0.719	1e-103
Q5R9X6	319	Pyrroline-5-carboxylate r	yes	no	0.942	0.815	0.446	2e-53
P32322	319	Pyrroline-5-carboxylate r	no	no	0.942	0.815	0.446	2e-53
Q9HH99	270	Pyrroline-5-carboxylate r	yes	no	0.963	0.985	0.423	3e-52
Q5RAQ3	320	Pyrroline-5-carboxylate r	no	no	0.942	0.812	0.423	6e-52
Q96C36	320	Pyrroline-5-carboxylate r	no	no	0.942	0.812	0.423	7e-52
Q6AY23	320	Pyrroline-5-carboxylate r	yes	no	0.942	0.812	0.431	2e-51

>sp|P54904|P5CR1_ARATH Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/276 (72%), Positives = 226/276 (81%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPAESF +GFIGAGKMAESIA+GV  SGVLPP+RICTAVHSNL RRD FES GV 
Sbjct: 1   MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           V S +  VV+ SDVV+FSVKPQV K AV TE        +  +   +G+ + +   EW+G
Sbjct: 61  VFSTSEEVVKESDVVIFSVKPQVVKKAV-TELKSKLSKNKILVSVAAGI-KLNDLQEWSG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG ++  LFG+VGKI +ADEK+FDA+TGL
Sbjct: 119 QDRFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct: 179 SGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK  FR  LMNAVVAAAKRSRELS
Sbjct: 239 PGGTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2

>sp|P17817|P5CR_SOYBN Pyrroline-5-carboxylate reductase OS=Glycine max PE=2 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/276 (70%), Positives = 225/276 (81%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+ FPIPAES+ LGFIGAGKMAESIA+G  +SGVLPP RI TAVH NL RR AFES GV 
Sbjct: 1   MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VL  N+ VV  SDVVV SVKPQ+ K  V+++        +  +   +G  +     EW G
Sbjct: 61  VLPSNDDVVRESDVVVLSVKPQLVKD-VVSKLTPLLTKHKLLVSVAAG-TKLKDLQEWAG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           + RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGL
Sbjct: 119 NDRFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV S
Sbjct: 179 SGSGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTI GIHELE  GFRG LMNAVVAAAKRSRELS
Sbjct: 239 PGGTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q04708|P5CR_PEA Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/276 (71%), Positives = 223/276 (80%), Gaps = 3/276 (1%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PI ++S+ LGFIGAGKMAESIAKG ++SGVLP  RI TA HSN  RR AFESIG+ 
Sbjct: 1   MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VLS N+ VV  S+VVVFSVKPQ+ K  V+  +       +  +   +G+ +     EW G
Sbjct: 60  VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPL-LTKDKLLVSVAAGI-KLKDLQEWAG 117

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           H RFIRVMPNTP+AVG+AA+VMSLGG ATEED  LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 118 HERFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGL 177

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV S
Sbjct: 178 SGSGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTS 237

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 238 PGGTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/271 (71%), Positives = 221/271 (81%), Gaps = 3/271 (1%)

Query: 5   PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD 64
           PIP +++ LGFIGAGKMAESIA+GV KSGVLP  RI TA H    RR+AFES GVKVL  
Sbjct: 8   PIPTDTYKLGFIGAGKMAESIARGVVKSGVLPASRIRTA-HLGSARREAFESFGVKVLDR 66

Query: 65  NNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRF 124
           N+ VVE SDV++FSVKPQ+ K  V+          +  +   +G+ +     +W GHSRF
Sbjct: 67  NDQVVEDSDVIIFSVKPQIVKEVVLQLRPL-LSEKQLLVSIVAGV-KLKELEDWAGHSRF 124

Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
           IRVMPNTP+AVGEAA+VMSLG TAT EDGELI KLFG++GKIW+ADEKLFDA+TGLSGSG
Sbjct: 125 IRVMPNTPAAVGEAASVMSLGATATGEDGELITKLFGAIGKIWKADEKLFDAVTGLSGSG 184

Query: 185 PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT 244
           PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV + GKHPGQLKDDVAS GGT
Sbjct: 185 PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVARGGKHPGQLKDDVASAGGT 244

Query: 245 TIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
           TIAGIHELEK GFRG LMNAVV+A KRS+E+
Sbjct: 245 TIAGIHELEKGGFRGTLMNAVVSATKRSQEI 275

Actinidia chinensis (taxid: 3625)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5R9X6|P5CR1_PONAB Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/269 (44%), Positives = 163/269 (60%), Gaps = 9/269 (3%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N   V++
Sbjct: 3   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query: 72  SDVVVFSVKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
           SDV+  +VKP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 119

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 120 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct: 180 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 239

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 240 HALHVLESGGFRSLLINAVEASCIRTREL 268

Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|P32322|P5CR1_HUMAN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/269 (44%), Positives = 163/269 (60%), Gaps = 9/269 (3%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N   V++
Sbjct: 3   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query: 72  SDVVVFSVKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
           SDV+  +VKP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 119

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 120 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct: 180 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 239

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 240 HALHVLESGGFRSLLINAVEASCIRTREL 268

Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9HH99|P5CR_METAC Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=proC PE=3 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/267 (42%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 9   ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
           E+  +GFIGAGKM  ++ +G  K+G++ P+ I  +       +D    +G++V +DN  +
Sbjct: 2   ENQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVI 61

Query: 69  VEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVM 128
           V  SD+++ +VKPQ   ++V++         +  I   +G+   +        +R +RVM
Sbjct: 62  VRESDILILAVKPQT-LSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVM 120

Query: 129 PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYI 188
           PN  + V EAA+ ++ G  AT ED +   ++F +VG   +  E L DA+TGLSGSGPA+I
Sbjct: 121 PNIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFI 180

Query: 189 FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248
           F  IEA+ADG V  G+ R+ AL LA+QTVLGAA M  ++G HPG+LKD V SP GTTI G
Sbjct: 181 FPVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQG 240

Query: 249 IHELEKSGFRGILMNAVVAAAKRSREL 275
           IH LE++G R   MNAV+ A++RS+EL
Sbjct: 241 IHSLEEAGIRAAFMNAVIRASERSKEL 267

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5RAQ3|P5CR2_PONAB Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1

 Score =  204 bits (519), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 160/269 (59%), Gaps = 9/269 (3%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +GFIGAG++A ++A+G   +G+L   +I  ++   NL    A   +GV +   N   V++
Sbjct: 3   VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62

Query: 72  SDVVVFSVKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
           SDV+  +VKP +     D+     +       C + +   S      + + +    + IR
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADVQAGHIVVSCAAGVTISS---VEKKLMAFQPAPKVIR 119

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 120 CMTNTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI
Sbjct: 180 YAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATI 239

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 240 HALHFLESGGFRSLLINAVEASCIRTREL 268

Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q96C36|P5CR2_HUMAN Pyrroline-5-carboxylate reductase 2 OS=Homo sapiens GN=PYCR2 PE=1 SV=1

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 160/269 (59%), Gaps = 9/269 (3%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +GFIGAG++A ++A+G   +G+L   +I  ++   NL    A   +GV +   N   V++
Sbjct: 3   VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62

Query: 72  SDVVVFSVKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
           SDV+  +VKP +     D+     +       C + +   S      + + +    + IR
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISS---VEKKLMAFQPAPKVIR 119

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 120 CMTNTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI
Sbjct: 180 YAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATI 239

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 240 HALHFLESGGFRSLLINAVEASCIRTREL 268

Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6AY23|P5CR2_RAT Pyrroline-5-carboxylate reductase 2 OS=Rattus norvegicus GN=Pycr2 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/269 (43%), Positives = 160/269 (59%), Gaps = 9/269 (3%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +GFIGAG++A ++A+G   +GVL   +I  ++   +L    A   +GV +   N   V +
Sbjct: 3   VGFIGAGQLACALARGFTAAGVLSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKDTVRH 62

Query: 72  SDVVVFSVKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
           SDV+  +VKP +     D+     +E      C + +   S      + + +    + IR
Sbjct: 63  SDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISS---VEKKLMAFQPAPKVIR 119

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DAITGLSGSGPA
Sbjct: 120 CMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPA 179

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F+A++ALADGGV  G+PR LA+ L +Q +LGAA M+  S  HPGQLKD+V SPGG TI
Sbjct: 180 YAFMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLLDSEDHPGQLKDNVCSPGGATI 239

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 240 HALHFLESGGFRSLLINAVEASCIRTREL 268

Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
296882319	276	pyrroline-5-carboxylate reductase [Arabi	0.992	0.992	0.735	1e-108
15241505	276	Pyrroline-5-carboxylate reductase [Arabi	0.992	0.992	0.724	1e-107
224086867	279	predicted protein [Populus trichocarpa]	0.974	0.964	0.741	1e-106
297811617	276	predicted protein [Arabidopsis lyrata su	0.992	0.992	0.717	1e-106
357509475	274	Pyrroline-5-carboxylate reductase [Medic	0.992	1.0	0.713	1e-105
312283283	276	unnamed protein product [Thellungiella h	0.992	0.992	0.724	1e-105
351720961	274	pyrroline-5-carboxylate reductase [Glyci	0.992	1.0	0.706	1e-104
449449789	276	PREDICTED: pyrroline-5-carboxylate reduc	0.992	0.992	0.702	1e-103
417540	273	RecName: Full=Pyrroline-5-carboxylate re	0.989	1.0	0.710	1e-103
356504710	274	PREDICTED: pyrroline-5-carboxylate reduc	0.992	1.0	0.699	1e-103

>gi|296882319|gb|ADH83382.1| pyrroline-5-carboxylate reductase [Arabis stelleri]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/276 (73%), Positives = 227/276 (82%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPAESF +GF+GAGKMAESIA+GV  SGVLPP+RICTAVHSNL RRD FES GV 
Sbjct: 1   MEILPIPAESFKVGFVGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           V S +  VV+ SDVV+FSVKPQV K AV TE +      +  +   +G+ +     EW+G
Sbjct: 61  VFSSSEEVVKESDVVIFSVKPQVVKKAV-TELSSKVSKNKLLVSVAAGI-KLKDLQEWSG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             RFIRVMPNTP+AVGEAATVMSLG  ATEEDGEL+ KLFGSVGKI RADEK+FDA+TGL
Sbjct: 119 QDRFIRVMPNTPAAVGEAATVMSLGTAATEEDGELVAKLFGSVGKILRADEKMFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYI+LAIEALADGGVAAGL RELALGLASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct: 179 SGSGPAYIYLAIEALADGGVAAGLHRELALGLASQTVLGAATMVSKAGKHPGVLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK  FR  LMNAVVAAA RSRELS
Sbjct: 239 PGGTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274

Source: Arabis stelleri

Species: Arabis stelleri

Genus: Arabis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241505|ref|NP_196984.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|1709786|sp|P54904.1|P5CR1_ARATH RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR; AltName: Full=Protein EMBRYO DEFECTIVE 2772 gi|15294224|gb|AAK95289.1|AF410303_1 AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|166815|gb|AAA61346.1| pyrroline carboxylate reductase [Arabidopsis thaliana] gi|1632776|emb|CAA70148.1| T5r protein [Arabidopsis thaliana] gi|9755748|emb|CAC01879.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|20453291|gb|AAM19884.1| AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|21593123|gb|AAM65072.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|332004695|gb|AED92078.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/276 (72%), Positives = 226/276 (81%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPAESF +GFIGAGKMAESIA+GV  SGVLPP+RICTAVHSNL RRD FES GV 
Sbjct: 1   MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           V S +  VV+ SDVV+FSVKPQV K AV TE        +  +   +G+ + +   EW+G
Sbjct: 61  VFSTSEEVVKESDVVIFSVKPQVVKKAV-TELKSKLSKNKILVSVAAGI-KLNDLQEWSG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG ++  LFG+VGKI +ADEK+FDA+TGL
Sbjct: 119 QDRFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct: 179 SGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK  FR  LMNAVVAAAKRSRELS
Sbjct: 239 PGGTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086867|ref|XP_002307988.1| predicted protein [Populus trichocarpa] gi|222853964|gb|EEE91511.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/271 (74%), Positives = 221/271 (81%), Gaps = 2/271 (0%)

Query: 6   IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN 65
           I  E++ LGFIGAGKMAESIAKG  +SG LPP RI T++HSN  RR AF+S+GVKVL  N
Sbjct: 9   IQTETYKLGFIGAGKMAESIAKGAVQSGFLPPPRISTSIHSNPARRLAFDSLGVKVLPQN 68

Query: 66  NAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFI 125
             VVE SDVV+FSVKPQV +  V+  E          +   +   +     EW GHSRFI
Sbjct: 69  RNVVEESDVVIFSVKPQVVRDVVL--ELRPLLTKDKLLVSIAAGTKLKDLQEWAGHSRFI 126

Query: 126 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGP 185
           RV+PNTPSAVGEAA+VM LGG ATEEDGEL+ KLFGSVGKIWRADEKLFDAI GLSGSGP
Sbjct: 127 RVVPNTPSAVGEAASVMCLGGAATEEDGELVAKLFGSVGKIWRADEKLFDAIVGLSGSGP 186

Query: 186 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 245
           AYI+LAIEALADGGVAAGLPRELA+GLASQTVLGAASM +K+GKHPGQLKDDVASPGGTT
Sbjct: 187 AYIYLAIEALADGGVAAGLPRELAMGLASQTVLGAASMASKTGKHPGQLKDDVASPGGTT 246

Query: 246 IAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           IAGIHELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 247 IAGIHELEKGGFRGTLMNAVVAAAKRSRELS 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811617|ref|XP_002873692.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319529|gb|EFH49951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/276 (71%), Positives = 223/276 (80%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPAESF +GFIGAGKMAESIA+GV  SGVLPP+RI TAVHSNL RRD FES GV 
Sbjct: 1   MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRISTAVHSNLNRRDVFESFGVN 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           V S +  VV+ SDVV+FSVKPQV K AV TE        +  +   +G+ +     EW+G
Sbjct: 61  VFSTSEEVVKESDVVIFSVKPQVVKKAV-TELKSKLSKSKILVSVAAGI-KLKDLQEWSG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG ++ KLF +VGKI + DEK+FDA+TGL
Sbjct: 119 QDRFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAKLFAAVGKILKTDEKMFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct: 179 SGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK  FR  LMNAVVAAAKRSRELS
Sbjct: 239 PGGTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509475|ref|XP_003625026.1| Pyrroline-5-carboxylate reductase [Medicago truncatula] gi|355500041|gb|AES81244.1| Pyrroline-5-carboxylate reductase [Medicago truncatula]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/276 (71%), Positives = 225/276 (81%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPA+S+ LGFIGAGKMAESIAKG  +SGVL P RI TA+HSN  RR AFESIG+ 
Sbjct: 1   MEIIPIPADSYTLGFIGAGKMAESIAKGAVRSGVLSPSRIKTAIHSNPARRTAFESIGIT 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VLS N+ VV  S+VVVFSVKPQ+ K  V+  +       +  +   +G+ +     EW G
Sbjct: 61  VLSSNDDVVRDSNVVVFSVKPQLLKDVVLKLKPL-LTKDKLLVSVAAGI-KMKDLQEWAG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           H RFIRVMPNT + VGEAA+VMSLGG ATEED  LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 119 HERFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKYFDAITGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T+SGKHPGQLKDDV S
Sbjct: 179 SGSGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATQSGKHPGQLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK+GFRGILMNAVVAAAKRS+ELS
Sbjct: 239 PGGTTIAGVHELEKAGFRGILMNAVVAAAKRSQELS 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283283|dbj|BAJ34507.1| unnamed protein product [Thellungiella halophila]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/276 (72%), Positives = 222/276 (80%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PI AESF +GFIGAGKMAESIA+GV  SG+LPP RI TAVHSNL RR  FES GV 
Sbjct: 1   MEILPISAESFKVGFIGAGKMAESIARGVVASGMLPPHRISTAVHSNLNRRQVFESFGVN 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           V S +  VV+ SDVV+FSVKPQV K AV TE        +  +   +G+ +     EW+G
Sbjct: 61  VFSSSEEVVKESDVVIFSVKPQVVKKAV-TELRTKLSKDKLLVSVAAGI-KLKDLQEWSG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG L+ KLFGSVGKI RADEK+FDA+TGL
Sbjct: 119 QDRFIRVMPNTPAAVGEAASVMSLGTAATEEDGALVAKLFGSVGKILRADEKMFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct: 179 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAATMVSKTGKHPGVLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK  FR  LMNAVVAAA RSRELS
Sbjct: 239 PGGTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720961|ref|NP_001235914.1| pyrroline-5-carboxylate reductase [Glycine max] gi|130972|sp|P17817.1|P5CR_SOYBN RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|18724|emb|CAA34401.1| unnamed protein product [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/276 (70%), Positives = 225/276 (81%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+ FPIPAES+ LGFIGAGKMAESIA+G  +SGVLPP RI TAVH NL RR AFES GV 
Sbjct: 1   MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VL  N+ VV  SDVVV SVKPQ+ K  V+++        +  +   +G  +     EW G
Sbjct: 61  VLPSNDDVVRESDVVVLSVKPQLVKD-VVSKLTPLLTKHKLLVSVAAG-TKLKDLQEWAG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           + RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGL
Sbjct: 119 NDRFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV S
Sbjct: 179 SGSGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTI GIHELE  GFRG LMNAVVAAAKRSRELS
Sbjct: 239 PGGTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449789|ref|XP_004142647.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus] gi|449527143|ref|XP_004170572.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 223/276 (80%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PI  +++ LGFIGAGKMAESIAKG+ +SG+LPP RI TAVHSN  RR AFES GV+
Sbjct: 1   MEVLPISIDAYRLGFIGAGKMAESIAKGIVQSGLLPPSRISTAVHSNPSRRIAFESFGVR 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VL  N+ VVE SDVV+ SVKPQV K  V+          +  +   +G+ +     +W G
Sbjct: 61  VLPKNDNVVEESDVVILSVKPQVVKNVVLKLRPL-LSGKKLLVSVAAGV-KLKDLQDWAG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           H+RFIRVMPNTP+AVGEAA+VMSLG  A +EDG+L+ KLFGSVGKIW A+EK FDA+TGL
Sbjct: 119 HNRFIRVMPNTPAAVGEAASVMSLGEGAIKEDGQLVAKLFGSVGKIWEAEEKYFDAVTGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYIFLAIEALADGGVAAGLPRELA+GLASQTVLGAASMVTK+GKHPGQLKDDV S
Sbjct: 179 SGSGPAYIFLAIEALADGGVAAGLPRELAMGLASQTVLGAASMVTKTGKHPGQLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAGIHELEK G RG+ MNAVVAAAKR +ELS
Sbjct: 239 PGGTTIAGIHELEKGGLRGMFMNAVVAAAKRGQELS 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|417540|sp|Q04708.1|P5CR_PEA RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|20851|emb|CAA44646.1| pyrroline carboxylate reductase [Pisum sativum] gi|445614|prf||1909360A pyrroline carboxylate reductase

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/276 (71%), Positives = 223/276 (80%), Gaps = 3/276 (1%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PI ++S+ LGFIGAGKMAESIAKG ++SGVLP  RI TA HSN  RR AFESIG+ 
Sbjct: 1   MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VLS N+ VV  S+VVVFSVKPQ+ K  V+  +       +  +   +G+ +     EW G
Sbjct: 60  VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPL-LTKDKLLVSVAAGI-KLKDLQEWAG 117

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           H RFIRVMPNTP+AVG+AA+VMSLGG ATEED  LI +LFGS+GKIW+AD+K FDAITGL
Sbjct: 118 HERFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGL 177

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV S
Sbjct: 178 SGSGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTS 237

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 238 PGGTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504710|ref|XP_003521138.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Glycine max]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/276 (69%), Positives = 219/276 (79%), Gaps = 2/276 (0%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
           M+  PIPA+S+ LGFIGAGKMAESIA+G  +SGVLPP RI TAVHSN  RRD FES GV 
Sbjct: 1   MEIVPIPADSYNLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHSNPARRDTFESFGVT 60

Query: 61  VLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
           VL  N+ VV  S+VVVFSVKPQ+ K  V           +  +   +G  +     EW G
Sbjct: 61  VLPSNDDVVRESNVVVFSVKPQLVKDVVFKLTPL-LTKNKLLVSVAAG-TKLKDLQEWAG 118

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
           + RFIRVMPNTP+AVGEAA+VMSLGG+ATEEDG +I KL GS+GKIW+A+EK FDAITGL
Sbjct: 119 NDRFIRVMPNTPAAVGEAASVMSLGGSATEEDGNIIAKLLGSIGKIWKAEEKYFDAITGL 178

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGSGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV ++GKHPGQLKDDV S
Sbjct: 179 SGSGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVIQTGKHPGQLKDDVTS 238

Query: 241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           PGGTTI GIHELE  GFRG LMNAVVAA KRSRELS
Sbjct: 239 PGGTTITGIHELENGGFRGTLMNAVVAATKRSRELS 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2185435	276	P5CR "pyrroline-5- carboxylate	0.992	0.992	0.692	5e-92
UNIPROTKB|B4DMU0	346	PYCR1 "Pyrroline-5-carboxylate	0.956	0.763	0.424	1.4e-46
UNIPROTKB|P32322	319	PYCR1 "Pyrroline-5-carboxylate	0.942	0.815	0.427	3.8e-46
UNIPROTKB|Q5R9X6	319	PYCR1 "Pyrroline-5-carboxylate	0.942	0.815	0.427	3.8e-46
ZFIN|ZDB-GENE-040426-1675	320	pycr1 "pyrroline-5-carboxylate	0.942	0.812	0.405	7.9e-46
UNIPROTKB|F6XKI0	341	PYCR1 "Pyrroline-5-carboxylate	0.956	0.774	0.402	1.3e-45
UNIPROTKB|E2QZ30	320	PYCR1 "Uncharacterized protein	0.942	0.812	0.408	1.6e-45
ZFIN|ZDB-GENE-050522-26	362	zgc:110655 "zgc:110655" [Danio	0.942	0.718	0.401	1.6e-45
WB|WBGene00010924	279	M153.1 [Caenorhabditis elegans	0.923	0.913	0.423	2.1e-45
RGD|1307863	309	Pycr1 "pyrroline-5-carboxylate	0.942	0.841	0.416	2.7e-45

TAIR|locus:2185435 P5CR "pyrroline-5- carboxylate (P5C) reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 191/276 (69%), Positives = 215/276 (77%)

Query:     1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
             M+  PIPAESF +GFIGAGKMAESIA+GV  SGVLPP+RICTAVHSNL RRD FES GV 
Sbjct:     1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60

Query:    61 VLSDNNAXXXXXXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120
             V S +              KPQV K AV TE        +  +   +G+ + +   EW+G
Sbjct:    61 VFSTSEEVVKESDVVIFSVKPQVVKKAV-TELKSKLSKNKILVSVAAGI-KLNDLQEWSG 118

Query:   121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
               RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG ++  LFG+VGKI +ADEK+FDA+TGL
Sbjct:   119 QDRFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGL 178

Query:   181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
             SGSGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV S
Sbjct:   179 SGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTS 238

Query:   241 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
             PGGTTIAG+HELEK  FR  LMNAVVAAAKRSRELS
Sbjct:   239 PGGTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0006561 "proline biosynthetic process" evidence=IEA;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0006567 "threonine catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=IEP

UNIPROTKB|B4DMU0 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 116/273 (42%), Positives = 156/273 (57%)

Query:     9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
             +S  +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N  
Sbjct:    26 DSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 85

Query:    68 XXXXXXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHS 122
                         KP +     D+     E+      C + +   S  ++ S +       
Sbjct:    86 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAF---RPAP 142

Query:   123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 182
             R IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSG
Sbjct:   143 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSG 202

Query:   183 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 242
             SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPG
Sbjct:   203 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPG 262

Query:   243 GTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
             G TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:   263 GATIHALHVLESGGFRSLLINAVEASCIRTREL 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

UNIPROTKB|P32322 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 115/269 (42%), Positives = 154/269 (57%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N      
Sbjct:     3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct:    63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAF---RPAPRVIR 119

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct:   120 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct:   180 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 239

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H LE  GFR +L+NAV A+  R+REL
Sbjct:   240 HALHVLESGGFRSLLINAVEASCIRTREL 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IDA;TAS

GO:0006561 "proline biosynthetic process" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q5R9X6 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 115/269 (42%), Positives = 154/269 (57%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N      
Sbjct:     3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct:    63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAF---RPAPRVIR 119

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct:   120 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct:   180 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 239

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H LE  GFR +L+NAV A+  R+REL
Sbjct:   240 HALHVLESGGFRSLLINAVEASCIRTREL 268

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006561 "proline biosynthetic process" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

ZFIN|ZDB-GENE-040426-1675 pycr1 "pyrroline-5-carboxylate reductase 1" [Danio rerio (taxid:7955)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 109/269 (40%), Positives = 156/269 (57%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++ KG   +GV+   RI  ++  ++L        +G    + N      
Sbjct:     3 VGFIGAGQLAHALVKGFTAAGVIATHRITASSPDTDLPTVIGLRKMGAFFTTSNKETVSK 62

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S +++  + +++    + IR
Sbjct:    63 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTI-SSIEK--KLLQYRSAPKVIR 119

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct:   120 CMTNTPVVVREGATVYATGTHAEVEDGKLLEQLMASVGYCTEVEEDLIDAVTGLSGSGPA 179

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+ +S +HPGQLKD+VASPGG TI
Sbjct:   180 YAFTAVDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLESEQHPGQLKDNVASPGGATI 239

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H +E  GFR +L+NAV A+  R+REL
Sbjct:   240 HALHVMESGGFRSLLINAVEASCIRTREL 268

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006561 "proline biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

UNIPROTKB|F6XKI0 PYCR1 "Pyrroline-5-carboxylate reductase" [Canis lupus familiaris (taxid:9615)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 110/273 (40%), Positives = 156/273 (57%)

Query:     9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
             ++  +GFIGAG++A ++AKG   +G++   +I  ++   +L        +GV +   N  
Sbjct:    21 DTMSVGFIGAGQLAFALAKGFTAAGIVAAHKIMASSPDMDLPTVSGLRKMGVNLTPHNKE 80

Query:    68 XXXXXXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHS 122
                         KP +     D+     E+      C + +   S +++  + + +    
Sbjct:    81 TVRHSDVLFLAVKPHIIPFILDEIGAHIEDRHIVVSCAAGVTI-SSIEK--KLMAFQPAP 137

Query:   123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 182
             + IR M NTP  V E ATV + G  A  EDG L+ +L GSVG     +E L DA+TGLSG
Sbjct:   138 KVIRCMTNTPVVVREGATVYATGTHAQVEDGRLLEQLMGSVGFCTEVEEDLIDAVTGLSG 197

Query:   183 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 242
             SGPAY F A+EALADGGV  GLPR LA+ L +Q +LGA+ M+  S KHPGQL+D+V SPG
Sbjct:   198 SGPAYAFTALEALADGGVKMGLPRRLAVRLGAQALLGASKMLLDSEKHPGQLRDNVCSPG 257

Query:   243 GTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
             G TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:   258 GATIHALHVLESGGFRSLLINAVEASCIRTREL 290

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QZ30 PYCR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 110/269 (40%), Positives = 154/269 (57%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++AKG   +G++   +I  ++   +L        +GV +   N      
Sbjct:     3 VGFIGAGQLAFALAKGFTAAGIVAAHKIMASSPDMDLPTVSGLRKMGVNLTPHNKETVRH 62

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S +++  + + +    + IR
Sbjct:    63 SDVLFLAVKPHIIPFILDEIGAHIEDRHIVVSCAAGVTI-SSIEK--KLMAFQPAPKVIR 119

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E ATV + G  A  EDG L+ +L GSVG     +E L DA+TGLSGSGPA
Sbjct:   120 CMTNTPVVVREGATVYATGTHAQVEDGRLLEQLMGSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A+EALADGGV  GLPR LA+ L +Q +LGA+ M+  S KHPGQL+D+V SPGG TI
Sbjct:   180 YAFTALEALADGGVKMGLPRRLAVRLGAQALLGASKMLLDSEKHPGQLRDNVCSPGGATI 239

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H LE  GFR +L+NAV A+  R+REL
Sbjct:   240 HALHVLESGGFRSLLINAVEASCIRTREL 268

GO:0006561 "proline biosynthetic process" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-050522-26 zgc:110655 "zgc:110655" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 108/269 (40%), Positives = 156/269 (57%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++ KG   +GV+  +RI  ++  + L        +GV + + N      
Sbjct:    48 VGFIGAGQLAHAMVKGFTAAGVIAANRITASSPDTELPTVSGLRKMGVNLTTSNKEATHR 107

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S +++  + +++    + +R
Sbjct:   108 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTI-SSIEK--KLLQYRESPKVMR 164

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct:   165 CMTNTPVVVREGATVYATGTHAHLEDGKLLEQLMASVGFCTEVEEDLIDAVTGLSGSGPA 224

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A++ALADGGV  GLPR LA+ L +Q ++GAA M+  S +HPGQLKD+V SPGG TI
Sbjct:   225 YAFTALDALADGGVKMGLPRRLAVRLGAQALMGAAKMLLDSEQHPGQLKDNVCSPGGATI 284

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H LE  GFR +L+NAV A+  R+REL
Sbjct:   285 HALHFLESGGFRSLLINAVEASCIRTREL 313

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006561 "proline biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

WB|WBGene00010924 M153.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 113/267 (42%), Positives = 155/267 (58%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ESIGVKVLSDNNAX 68
             +GFIGAGKMA+++A+G+  SG +  D I   + S+ KR + F    +++G+    DN   
Sbjct:     3 IGFIGAGKMAQALARGLINSGRITADNI---IASSPKRDEVFLDQCKALGLNTTHDNAEV 59

Query:    69 XXXXXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE--WTGHSRFIR 126
                        KP V  + V +E A         +    G+    R +E      SR +R
Sbjct:    60 VQKSDVVFLAVKP-VHVSKVASEIAPALSKEHLVVSIALGIT--IRNIESLLPTKSRVVR 116

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
             VMPNTPS V   A+  ++G    + D E + KL  +VG      E   D +TGLSGSGP+
Sbjct:   117 VMPNTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDPVTGLSGSGPS 176

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y+F  IE LADGGV  GLPR+LAL LA+ T+LGAA MV ++G HP QLKDDV SP G+++
Sbjct:   177 YMFAVIEGLADGGVKVGLPRDLALKLAAYTLLGAAKMVLETGIHPAQLKDDVQSPAGSSV 236

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSR 273
              G+H+LE  G +G+LM+AV AA  RSR
Sbjct:   237 YGMHKLESGGLKGVLMDAVEAATNRSR 263

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA

GO:0006561 "proline biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

RGD|1307863 Pycr1 "pyrroline-5-carboxylate reductase 1" [Rattus norvegicus (taxid:10116)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 112/269 (41%), Positives = 153/269 (56%)

Query:    13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
             +GFIGAG++A ++AKG   +GVL   +I  ++   +     A   IGV +   N      
Sbjct:     3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVCH 62

Query:    72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                     KP +     D+     E+      C + +   S +++  +   +    + IR
Sbjct:    63 SDVLFLAVKPHIIPFILDEIGANIEDRHIVVSCAAGVTINS-IEK--KLTAFQPAPKVIR 119

Query:   127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
              M NTP  V E  TV + G  A  EDG+L+ +L GSVG     +E L DA+TGLSGSGPA
Sbjct:   120 CMTNTPVVVREGVTVYATGTHAQVEDGKLVEQLMGSVGFCTEVEEDLIDAVTGLSGSGPA 179

Query:   187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
             Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V SPGG TI
Sbjct:   180 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATI 239

Query:   247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
               +H LE  GFR +L+NAV A+  R+REL
Sbjct:   240 HALHVLESGGFRSLLINAVEASCIRTREL 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004735 "pyrroline-5-carboxylate reductase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006561 "proline biosynthetic process" evidence=ISO

GO:0034599 "cellular response to oxidative stress" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0055129 "L-proline biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54904	P5CR1_ARATH	1, ., 5, ., 1, ., 2	0.7246	0.9927	0.9927	yes	no
Q9CPE8	P5CR_PASMU	1, ., 5, ., 1, ., 2	0.3085	0.9420	0.9454	yes	no
P43869	P5CR_HAEIN	1, ., 5, ., 1, ., 2	0.3045	0.9456	0.9630	yes	no
Q9P7Y7	P5CR_SCHPO	1, ., 5, ., 1, ., 2	0.3054	0.9384	0.9184	yes	no
Q5R9X6	P5CR1_PONAB	1, ., 5, ., 1, ., 2	0.4460	0.9420	0.8150	yes	no
Q922Q4	P5CR2_MOUSE	1, ., 5, ., 1, ., 2	0.4312	0.9420	0.8125	yes	no
Q04708	P5CR_PEA	1, ., 5, ., 1, ., 2	0.7101	0.9891	1.0	N/A	no
E0TY11	P5CR1_BACPZ	1, ., 5, ., 1, ., 2	0.3406	0.9239	0.8585	yes	no
O04016	P5CR_ACTCH	1, ., 5, ., 1, ., 2	0.7195	0.9710	0.9640	N/A	no
P32263	P5CR_YEAST	1, ., 5, ., 1, ., 2	0.3034	0.9275	0.8951	yes	no
Q9HH99	P5CR_METAC	1, ., 5, ., 1, ., 2	0.4232	0.9637	0.9851	yes	no
P54893	P5CR_THET2	1, ., 5, ., 1, ., 2	0.3670	0.9094	0.9616	yes	no
P0CI77	P5CR1_BACSU	1, ., 5, ., 1, ., 2	0.3443	0.9239	0.8585	yes	no
P0A9L9	P5CR_SHIFL	1, ., 5, ., 1, ., 2	0.3396	0.9492	0.9739	yes	no
Q58DT4	P5CR1_BOVIN	1, ., 5, ., 1, ., 2	0.4312	0.9420	0.8125	yes	no
P22008	P5CR_PSEAE	1, ., 5, ., 1, ., 2	0.3561	0.9021	0.9120	yes	no
P17817	P5CR_SOYBN	1, ., 5, ., 1, ., 2	0.7065	0.9927	1.0	yes	no
O66553	P5CR_AQUAE	1, ., 5, ., 1, ., 2	0.3146	0.9130	0.9509	yes	no
Q6AY23	P5CR2_RAT	1, ., 5, ., 1, ., 2	0.4312	0.9420	0.8125	yes	no
P0C1E4	P5CR_CORGL	1, ., 5, ., 1, ., 2	0.3396	0.9492	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.5.1.2	0.979
3rd Layer	1.5.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
PLN02688	266	PLN02688, PLN02688, pyrroline-5-carboxylate reduct	1e-137
PRK11880	267	PRK11880, PRK11880, pyrroline-5-carboxylate reduct	6e-88
COG0345	266	COG0345, ProC, Pyrroline-5-carboxylate reductase [	2e-85
TIGR00112	245	TIGR00112, proC, pyrroline-5-carboxylate reductase	1e-83
PRK12491	272	PRK12491, PRK12491, pyrroline-5-carboxylate reduct	2e-52
PTZ00431	260	PTZ00431, PTZ00431, pyrroline carboxylate reductas	1e-48
PRK07679	279	PRK07679, PRK07679, pyrroline-5-carboxylate reduct	6e-46
PRK07634	245	PRK07634, PRK07634, pyrroline-5-carboxylate reduct	2e-26
PRK06928	277	PRK06928, PRK06928, pyrroline-5-carboxylate reduct	2e-11
PRK07680	273	PRK07680, PRK07680, late competence protein ComER;	4e-11
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	2e-10
PRK06476	258	PRK06476, PRK06476, pyrroline-5-carboxylate reduct	2e-06

>gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase

 Score =  387 bits (995), Expect = e-137
 Identities = 170/271 (62%), Positives = 197/271 (72%), Gaps = 16/271 (5%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +GFIGAGKMAE+IA+G+  SGV+PP RI TA  SN  RRD F+S+GVK  + N  VV+ S
Sbjct: 3   VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSS 62

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL-------QRWSRWVEWTGHSRFI 125
           DV++ +VKPQV K  +   E                L          +   EW G  R +
Sbjct: 63  DVIILAVKPQVVKDVL--TELRPL-------LSKDKLLVSVAAGITLADLQEWAGGRRVV 113

Query: 126 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGP 185
           RVMPNTP  VGEAA+VMSLG  AT +D +L+  LFG+VGKIW  DEKL DA+TGLSGSGP
Sbjct: 114 RVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDAVTGLSGSGP 173

Query: 186 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 245
           AYIFLAIEALADGGVAAGLPR++AL LA+QTVLGAA MV ++GKHPGQLKD V SPGGTT
Sbjct: 174 AYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTT 233

Query: 246 IAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           IAG+HELEK GFR  LMNAVVAAAKRSRELS
Sbjct: 234 IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264

Length = 266

>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed

 Score =  262 bits (672), Expect = 6e-88
 Identities = 119/278 (42%), Positives = 159/278 (57%), Gaps = 29/278 (10%)

Query: 12  ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAVVE 70
            +GFIG G MA +I  G+  SGV P   I      + ++R A  E  GV+  +DN    +
Sbjct: 4   KIGFIGGGNMASAIIGGLLASGV-PAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQ 61

Query: 71  YSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSG-----------LQRWSRWVEWT 119
            +DVVV +VKPQV +  +            SE++               L R  R +   
Sbjct: 62  EADVVVLAVKPQVMEEVL------------SELKGQLDKLVVSIAAGVTLARLERLL--G 107

Query: 120 GHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAIT 178
                +R MPNTP+ VG   T ++     + ED EL+  L  + GK +W  DEK  DA+T
Sbjct: 108 ADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAVT 167

Query: 179 GLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 238
            +SGSGPAY+FL IEALAD GV  GLPRE A  LA+QTVLGAA ++ +SG+HP +L+D+V
Sbjct: 168 AVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNV 227

Query: 239 ASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
            SPGGTTIA +  LE+ G R  ++ AV AAAKRS+EL 
Sbjct: 228 TSPGGTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265

Length = 267

>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

 Score =  255 bits (655), Expect = 2e-85
 Identities = 124/270 (45%), Positives = 159/270 (58%), Gaps = 15/270 (5%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +GFIGAG M E+I  G+ KSG LPP+ I     S  KR       GV   +DN   VE +
Sbjct: 4   IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEA 63

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP------SGLQRWSRWVEWTGHSRFIR 126
           DVV  +VKPQ D   V+++        +   +        +G+          G  R +R
Sbjct: 64  DVVFLAVKPQ-DLEEVLSK-------LKPLTKDKLVISIAAGVSI-ETLERLLGGLRVVR 114

Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
           VMPNTP+ VG   T +S     +EED   +  L  +VGK+   +E L DA+T LSGSGPA
Sbjct: 115 VMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPA 174

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y+FL IEALAD GV  GLPRE A  LA+QTV GAA ++ +SG+HP +L+D V SPGGTTI
Sbjct: 175 YVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTI 234

Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           AG+  LE+ GFRG ++ AV AA KRS EL 
Sbjct: 235 AGLRVLEEDGFRGAVIEAVEAAYKRSEELG 264

Length = 266

>gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase

 Score =  250 bits (641), Expect = 1e-83
 Identities = 110/256 (42%), Positives = 143/256 (55%), Gaps = 25/256 (9%)

Query: 31  KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV------- 83
           K+G L    I     S  K     + +G+   SD    V+ +DVV  +VKPQ        
Sbjct: 3   KAGALAAYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSE 62

Query: 84  -----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEA 138
                 K  ++   A G      ++ +  G           G  R +RVMPNTP+ VG  
Sbjct: 63  LKSEKGKDKLLISIAAGVTL--EKLSQLLG-----------GTRRVVRVMPNTPAKVGAG 109

Query: 139 ATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADG 198
            T ++     +EED  L+  LF +VG++    E L DA+T LSGSGPAY+FL IEALAD 
Sbjct: 110 VTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALADA 169

Query: 199 GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFR 258
           GV  GLPRELAL LA+QTV GAA ++ +SG+HP  LKD V SPGGTTIAG+  LE+ G R
Sbjct: 170 GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVR 229

Query: 259 GILMNAVVAAAKRSRE 274
           G ++ AV AA +RSRE
Sbjct: 230 GAVIEAVEAAVRRSRE 245

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs [Amino acid biosynthesis, Glutamate family]. Length = 245

>gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed

 Score =  171 bits (435), Expect = 2e-52
 Identities = 98/273 (35%), Positives = 159/273 (58%), Gaps = 19/273 (6%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVH-SNLKRRDAFESIGVKVLSDNNAVVE 70
           +GFIG G M  ++  G+    ++ PD+I C+ ++ SNLK  +A +  G+ + ++NN V  
Sbjct: 5   IGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK--NASDKYGITITTNNNEVAN 62

Query: 71  YSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIER-------PSGLQRWSRWVEWTGHSR 123
            +D+++ S+KP +  ++VI +        + +I+         +G    S   E+    +
Sbjct: 63  SADILILSIKPDL-YSSVINQ-------IKDQIKNDVIVVTIAAGKSIKSTENEFDRKLK 114

Query: 124 FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGS 183
            IRVMPNTP  VGE  + +      TE+D + +  +F   G+    +EKL D +T +SGS
Sbjct: 115 VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDVVTSISGS 174

Query: 184 GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG 243
            PAY+++ IEA+AD  V  G+PR+ A   A+Q VLG+A MV ++G HPG+LKD V SPGG
Sbjct: 175 SPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGG 234

Query: 244 TTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           TTI  +  LE+ G R  +++A+    ++S E+S
Sbjct: 235 TTIEAVATLEEKGLRTAIISAMKRCTQKSMEMS 267

Length = 272

>gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional

 Score =  161 bits (409), Expect = 1e-48
 Identities = 96/268 (35%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 9   ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
           E+  +GFIG GKM  ++A G+  S ++  + I    H+  K+   F       L  N  +
Sbjct: 2   ENIRVGFIGLGKMGSALAYGIENSNIIGKENI--YYHTPSKKNTPF-----VYLQSNEEL 54

Query: 69  VEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRV 127
            +  D++V +VKP  D A  +  E   +   +  I    GL       E  G  ++ +RV
Sbjct: 55  AKTCDIIVLAVKP--DLAGKVLLEIKPYLGSKLLISICGGLN-LKTLEEMVGVEAKIVRV 111

Query: 128 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAY 187
           MPNTPS VG+ + V          D + +  +F + G I    EK  D  T +SG GPAY
Sbjct: 112 MPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGPAY 171

Query: 188 IFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 247
           +FL IE+L D GV  GL R+++  L  QT+LG+  MV  S +   QLKDDV SPGG TI 
Sbjct: 172 VFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIV 231

Query: 248 GIHELEKSGFRGILMNAVVAAAKRSREL 275
           G++ LEK  F+  +M+AV +A ++S+ +
Sbjct: 232 GLYTLEKHAFKYTVMDAVESACQKSKSM 259

Length = 260

>gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed

 Score =  155 bits (393), Expect = 6e-46
 Identities = 84/262 (32%), Positives = 140/262 (53%), Gaps = 2/262 (0%)

Query: 15  FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSD 73
           F+GAG +AE+I  G+  + V+  ++I  +  SN  R ++  +  GVK   +   ++  ++
Sbjct: 8   FLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDAN 67

Query: 74  VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPS 133
           ++  ++KP+ D A  +          +  I   +G+   S           IR MPNT +
Sbjct: 68  ILFLAMKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSA 126

Query: 134 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 193
           A+ ++AT +S    AT E  +    LF ++G +   +E+   A+T LSGSGPAYI+  +E
Sbjct: 127 AILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVE 186

Query: 194 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 253
           A+       GL  ++A  L  QT++GAA M+  S KHP  L+ ++ SPGGTT AGI  L+
Sbjct: 187 AMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTEAGIEVLQ 246

Query: 254 KSGFRGILMNAVVAAAKRSREL 275
           +  F+  L++ +  A +RS  L
Sbjct: 247 EHRFQQALISCITQATQRSHNL 268

Length = 279

>gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed

 Score =  103 bits (258), Expect = 2e-26
 Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 28/252 (11%)

Query: 15  FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSD 73
           FIGAG+MAE+I  G+ K+     + I  +  SN+++ D  ++   V   +D    V   D
Sbjct: 9   FIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVD 68

Query: 74  VVVFS------------VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH 121
            +V +            + P +    V+T  A G      E   P G       V W   
Sbjct: 69  TIVLAMPPSAHEELLAELSPLLSNQLVVTVAA-GIGPSYLEERLPKGTP-----VAW--- 119

Query: 122 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS 181
                +MPNT + +G++ ++ ++G +  E   E +  +   +G      E+    +T ++
Sbjct: 120 -----IMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQLTAVT 174

Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
           GS PA+++   E+L +   + G+  E A  L  Q + G+ASM+ +  + P  L++ V +P
Sbjct: 175 GSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASML-EQTQDPANLREQVTTP 233

Query: 242 GGTTIAGIHELE 253
           GG+T  G+  L 
Sbjct: 234 GGSTAEGLKALY 245

Length = 245

>gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 17/252 (6%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEY 71
           +GFIG G MA+ IA  + ++ V  P+ I     S  +  +        V L+DN A +  
Sbjct: 4   IGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFT 63

Query: 72  SDVVVF------SVKPQVDK-AAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRF 124
                F      +V P +   A V+T +       R  +   +G+      +E T   + 
Sbjct: 64  KCDHSFICVPPLAVLPLLKDCAPVLTPD-------RHVVSIAAGVSL-DDLLEITPGLQV 115

Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
            R++P+  SAVG   ++++   T  E +   + +       +    E+  D  + L+ S 
Sbjct: 116 SRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSS 175

Query: 185 PAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG 243
           P +I    E  A+  V  + L  E A    +  + G   ++ +         + VA+ GG
Sbjct: 176 PGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGG 235

Query: 244 TTIAGIHELEKS 255
            T  G   ++  
Sbjct: 236 ITAEGAEVIQAQ 247

Length = 277

>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 19/250 (7%)

Query: 14  GFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFESIGVKVLSDNNAV 68
           GFIG G M   + +   +SG + P ++     +     ++K R      G+ V      V
Sbjct: 4   GFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP----GIHVAKTIEEV 59

Query: 69  VEYSDVVVFSVKPQVDKAAVITEEAFGFC---CCRSEIERPSGLQRWSRWVEWTGHSRFI 125
           +  SD++   VKP +D   ++ + A       C  S I  P  +++    V      +  
Sbjct: 60  ISQSDLIFICVKP-LDIYPLLQKLAPHLTDEHCLVS-ITSPISVEQLETLVP----CQVA 113

Query: 126 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGP 185
           R++P+  +     A++ + G   +EED + + +LF ++      +E +    + +   GP
Sbjct: 114 RIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIEEDITRVSSDIVSCGP 173

Query: 186 AYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT 244
           A+    ++   D  V    + +E A  LAS+ ++G   ++ K       L++ V   GG 
Sbjct: 174 AFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGI 233

Query: 245 TIAGIHELEK 254
           T  GI  LE+
Sbjct: 234 TGEGIKVLEE 243

Length = 273

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVL-SDNNAVVE 70
          +G IGAG M E++A+G+A +G      +  A   N ++  A  E +GVK     N   VE
Sbjct: 2  IGIIGAGNMGEALARGLAAAG----HEVVIANSRNPEKAAALAEELGVKATAVSNEEAVE 57

Query: 71 YSDVVVFSVKPQV 83
           +DVV  +VKP+ 
Sbjct: 58 EADVVFLAVKPED 70

Length = 93

>gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 29/262 (11%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICT----AVHSNLKRRDAFESIGVKVLSDNNAV 68
           +GFIG G + E++  G+  S     + I +     + + L  R       V++  DN AV
Sbjct: 3   IGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP----KVRIAKDNQAV 58

Query: 69  VEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSE---IERPSGLQRWSRWVEWTGHS-RF 124
           V+ SDVV  +V+PQ      I EE       R     I   +   R +  +EW GH  + 
Sbjct: 59  VDRSDVVFLAVRPQ------IAEEVLRALRFRPGQTVISVIAATDR-AALLEWIGHDVKL 111

Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD-EKLFDAITGLSGS 183
           +R +P    A  +       G TA       +  LF ++G     D E+ +D +   S  
Sbjct: 112 VRAIPLPFVAERK-------GVTAIYPPDPFVAALFDALGTAVECDSEEEYDLLAAASAL 164

Query: 184 GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDVASPG 242
              Y F  +E         GL R+ A    +      A    +S K     L  + ++ G
Sbjct: 165 MATY-FGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223

Query: 243 GTTIAGIHELEKSGFRGILMNA 264
           G     +++  + G    L +A
Sbjct: 224 GLNEQVLNDFSRQGGYAALTDA 245

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	100.0
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	100.0
PTZ00431	260	pyrroline carboxylate reductase; Provisional	100.0
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	100.0
PLN02688	266	pyrroline-5-carboxylate reductase	100.0
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	100.0
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	100.0
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	100.0
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	100.0
PRK07680	273	late competence protein ComER; Validated	100.0
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	100.0
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	100.0
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	100.0
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.96
PRK06545	359	prephenate dehydrogenase; Validated	99.95
PRK07417	279	arogenate dehydrogenase; Reviewed	99.95
PRK08507	275	prephenate dehydrogenase; Validated	99.94
PF14748	107	P5CR_dimer: Pyrroline-5-carboxylate reductase dime	99.93
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.93
PRK08655	437	prephenate dehydrogenase; Provisional	99.93
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.92
PLN02256	304	arogenate dehydrogenase	99.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.91
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.91
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.89
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.88
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.88
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.88
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.85
PLN02712	667	arogenate dehydrogenase	99.84
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.84
PRK08818	370	prephenate dehydrogenase; Provisional	99.83
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.83
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.82
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.82
PLN02858	1378	fructose-bisphosphate aldolase	99.82
PLN02712	667	arogenate dehydrogenase	99.82
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.81
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.81
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.8
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.79
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.79
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.78
PLN02858	1378	fructose-bisphosphate aldolase	99.78
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.77
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.76
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.75
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.74
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.74
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.73
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.73
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.72
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.69
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.69
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.68
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.68
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.66
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.62
PRK06444	197	prephenate dehydrogenase; Provisional	99.62
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.62
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.61
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.61
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.6
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.59
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.59
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.58
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.57
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.57
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.55
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.55
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.53
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.53
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.52
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.52
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.5
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.5
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.49
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.46
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.42
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.41
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.39
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.37
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.37
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.36
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.35
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.34
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.31
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	99.29
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.29
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	99.23
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	99.2
PRK05225	487	ketol-acid reductoisomerase; Validated	99.15
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.14
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.06
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.03
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.99
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.98
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.95
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.93
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.93
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.91
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.88
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.88
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.79
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.78
PRK12480	330	D-lactate dehydrogenase; Provisional	98.68
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.65
PLN03139	386	formate dehydrogenase; Provisional	98.64
PRK07574	385	formate dehydrogenase; Provisional	98.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.56
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.54
PRK06141	314	ornithine cyclodeaminase; Validated	98.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.52
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.49
PRK13243	333	glyoxylate reductase; Reviewed	98.49
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.48
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.46
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.43
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.42
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.4
PRK08605	332	D-lactate dehydrogenase; Validated	98.39
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.35
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.35
COG5495	289	Uncharacterized conserved protein [Function unknow	98.34
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.29
PRK06436	303	glycerate dehydrogenase; Provisional	98.28
PLN00203	519	glutamyl-tRNA reductase	98.27
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.26
PRK07340	304	ornithine cyclodeaminase; Validated	98.25
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.24
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.24
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.23
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.21
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.21
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.21
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.2
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.2
PRK06407	301	ornithine cyclodeaminase; Provisional	98.2
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.18
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.18
PRK08291	330	ectoine utilization protein EutC; Validated	98.18
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.16
PRK06823	315	ornithine cyclodeaminase; Validated	98.16
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.15
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.13
PLN02928	347	oxidoreductase family protein	98.11
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.11
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.1
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.1
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.09
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.08
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.08
PRK11579	346	putative oxidoreductase; Provisional	98.08
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.07
PRK06046	326	alanine dehydrogenase; Validated	98.07
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.06
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.05
PRK06199	379	ornithine cyclodeaminase; Validated	98.04
PRK08618	325	ornithine cyclodeaminase; Validated	98.03
PRK07589	346	ornithine cyclodeaminase; Validated	98.03
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	98.03
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.02
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.0
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.97
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.97
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.95
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.94
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.93
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.91
PRK10206	344	putative oxidoreductase; Provisional	97.9
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.9
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.9
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.89
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.88
PRK06223	307	malate dehydrogenase; Reviewed	97.88
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.86
PLN02494	477	adenosylhomocysteinase	97.86
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.85
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.85
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.83
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.82
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.8
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.79
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.79
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.76
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.75
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.74
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.73
PLN02306	386	hydroxypyruvate reductase	97.73
PTZ00117	319	malate dehydrogenase; Provisional	97.73
PRK09496	453	trkA potassium transporter peripheral membrane com	97.72
PRK06932	314	glycerate dehydrogenase; Provisional	97.71
PRK06487	317	glycerate dehydrogenase; Provisional	97.7
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	97.7
PRK04148	134	hypothetical protein; Provisional	97.68
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.67
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.67
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.67
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.66
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.66
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	97.65
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.61
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.59
PRK15076	431	alpha-galactosidase; Provisional	97.59
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.59
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.56
PLN02602	350	lactate dehydrogenase	97.56
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.55
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.54
COG2910	211	Putative NADH-flavin reductase [General function p	97.53
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.53
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.52
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.51
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.49
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.44
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.41
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.41
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.4
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.39
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.38
PRK06349	426	homoserine dehydrogenase; Provisional	97.34
PRK10669	558	putative cation:proton antiport protein; Provision	97.33
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.32
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.31
PTZ00325	321	malate dehydrogenase; Provisional	97.3
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.27
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.24
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.23
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.22
COG2344	211	AT-rich DNA-binding protein [General function pred	97.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.2
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.19
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.19
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.14
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.14
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.12
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.11
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.1
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.1
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.07
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.07
PRK14982	340	acyl-ACP reductase; Provisional	97.07
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.06
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.06
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.06
CHL00194	317	ycf39 Ycf39; Provisional	97.05
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.05
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.04
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.03
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.02
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.01
PRK05442	326	malate dehydrogenase; Provisional	97.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.99
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.96
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.94
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.94
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.93
PRK09496	453	trkA potassium transporter peripheral membrane com	96.93
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.93
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.93
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.92
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.91
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.91
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.88
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.87
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	96.86
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.84
PF10728	132	DUF2520: Domain of unknown function (DUF2520); Int	96.79
PRK06153	393	hypothetical protein; Provisional	96.79
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.78
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.78
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.77
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.77
PLN00106	323	malate dehydrogenase	96.75
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.71
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.7
PRK05086	312	malate dehydrogenase; Provisional	96.7
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.7
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.68
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.66
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.63
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.61
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.59
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.58
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.57
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.56
PRK06270	341	homoserine dehydrogenase; Provisional	96.56
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.55
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.55
PRK08328	231	hypothetical protein; Provisional	96.54
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	96.54
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.53
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.5
PLN02775	286	Probable dihydrodipicolinate reductase	96.49
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.49
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.48
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.44
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.43
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.41
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.4
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.37
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.35
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	96.34
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.32
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.32
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.27
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.27
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.23
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.21
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.17
PLN02383	344	aspartate semialdehyde dehydrogenase	96.16
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.14
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.11
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.09
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.09
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.09
PLN03209	576	translocon at the inner envelope of chloroplast su	96.09
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.05
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.04
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.01
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.94
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.92
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.88
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.88
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.88
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.87
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.86
PRK07411	390	hypothetical protein; Validated	95.86
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.83
PRK06182	273	short chain dehydrogenase; Validated	95.81
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.79
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.66
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.65
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.58
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.57
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.55
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.53
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	95.53
PRK10637	457	cysG siroheme synthase; Provisional	95.52
PLN02427	386	UDP-apiose/xylose synthase	95.51
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	95.5
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.46
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.46
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.45
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.44
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.42
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.41
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.39
PLN02477	410	glutamate dehydrogenase	95.38
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.38
PRK08374	336	homoserine dehydrogenase; Provisional	95.32
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.28
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.27
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.2
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.2
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.2
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	95.19
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.18
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.18
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.17
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	95.15
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.15
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.14
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.1
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.08
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.07
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.07
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.06
PLN02686	367	cinnamoyl-CoA reductase	95.05
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	95.04
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.04
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	95.02
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.01
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.0
PRK08163	396	salicylate hydroxylase; Provisional	94.97
PRK08017	256	oxidoreductase; Provisional	94.96
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	94.94
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	94.89
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	94.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.86
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	94.85
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	94.74
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.74
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.72
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	94.66
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.65
PRK05993	277	short chain dehydrogenase; Provisional	94.64
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.63
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.62
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	94.61
PRK05717	255	oxidoreductase; Validated	94.6
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.6
PRK07236	386	hypothetical protein; Provisional	94.55
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.54
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.54
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.52
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.51
PRK13984	604	putative oxidoreductase; Provisional	94.49
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	94.46
PRK06180	277	short chain dehydrogenase; Provisional	94.44
PRK08703	239	short chain dehydrogenase; Provisional	94.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.33
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.32
PLN00198	338	anthocyanidin reductase; Provisional	94.31
PRK05868	372	hypothetical protein; Validated	94.3
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.3
PRK06847	375	hypothetical protein; Provisional	94.27
PLN02650	351	dihydroflavonol-4-reductase	94.27
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	94.24
PRK06753	373	hypothetical protein; Provisional	94.23
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	94.22
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.15
PRK05884	223	short chain dehydrogenase; Provisional	94.13
PRK07326	237	short chain dehydrogenase; Provisional	94.12
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.08
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	94.07
KOG1495	332	consensus Lactate dehydrogenase [Energy production	94.06
PRK07060	245	short chain dehydrogenase; Provisional	94.04
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.04
PRK07775	274	short chain dehydrogenase; Provisional	94.04
PRK09414	445	glutamate dehydrogenase; Provisional	94.03
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.02
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	94.02
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.01
PRK08013	400	oxidoreductase; Provisional	94.01
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.0
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.98
PRK07454	241	short chain dehydrogenase; Provisional	93.95
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.95
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.94
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.91
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	93.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.87
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.87
PRK10538	248	malonic semialdehyde reductase; Provisional	93.84
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.78
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.77
PRK06057	255	short chain dehydrogenase; Provisional	93.76
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	93.7
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.68
PLN02214	342	cinnamoyl-CoA reductase	93.64
PRK07538	413	hypothetical protein; Provisional	93.62
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.58
PRK07102	243	short chain dehydrogenase; Provisional	93.58
PRK08277	278	D-mannonate oxidoreductase; Provisional	93.56
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	93.55
PRK08267	260	short chain dehydrogenase; Provisional	93.52
PRK14031	444	glutamate dehydrogenase; Provisional	93.52
PRK12939	250	short chain dehydrogenase; Provisional	93.52
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.52
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	93.46
PRK05866	293	short chain dehydrogenase; Provisional	93.4
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	93.4
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.34
PRK07877	722	hypothetical protein; Provisional	93.34
PRK07588	391	hypothetical protein; Provisional	93.34
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.32
PRK07814	263	short chain dehydrogenase; Provisional	93.32
PRK06949	258	short chain dehydrogenase; Provisional	93.31
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	93.27
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.25
PLN02527	306	aspartate carbamoyltransferase	93.25
PRK12829	264	short chain dehydrogenase; Provisional	93.23
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.22
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	93.21
PRK09242	257	tropinone reductase; Provisional	93.2
PLN03075	296	nicotianamine synthase; Provisional	93.2
PRK08223	287	hypothetical protein; Validated	93.2
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.19
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.19
PRK08309	177	short chain dehydrogenase; Provisional	93.17
PRK07774	250	short chain dehydrogenase; Provisional	93.17
PLN00016	378	RNA-binding protein; Provisional	93.11
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	93.09
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.08
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.07
PRK11891	429	aspartate carbamoyltransferase; Provisional	93.07
PRK07825	273	short chain dehydrogenase; Provisional	93.07
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.06
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.0
PRK07045	388	putative monooxygenase; Reviewed	92.98
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	92.97

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-57  Score=378.26  Aligned_cols=263  Identities=46%  Similarity=0.709  Sum_probs=243.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      ++||||||+|+||.+|+.+|+++|.+++.+|+++ +|++++++.+.+ +|+..+.++.+++.++|+|||||||+++.+++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl   79 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL   79 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence            4799999999999999999999996678899999 999999975555 77776677788999999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      .++.  ++.+++.+++--+|+ +++.|++++++.+++|+|||+|+.++.|++.++.+.++++++.+.+.++|+++|.+++
T Consensus        80 ~~l~--~~~~~~lvISiaAGv-~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~  156 (266)
T COG0345          80 SKLK--PLTKDKLVISIAAGV-SIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVE  156 (266)
T ss_pred             HHhh--cccCCCEEEEEeCCC-CHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEE
Confidence            9993  122223455555999 9999999999889999999999999999999999999999999999999999999988


Q ss_pred             cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866          169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG  248 (276)
Q Consensus       169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~  248 (276)
                      ++|+++|.+++++||+|+|++.++++|.+++++.|+|++++++++.+++.|+++++.+++.+|..|++.|+||||+|++|
T Consensus       157 v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiag  236 (266)
T COG0345         157 VEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAG  236 (266)
T ss_pred             echHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHH
Confidence            88999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          249 IHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      |+.|++.+|+.++.+|++++++|++||+
T Consensus       237 l~~le~~g~~~~v~~av~aa~~r~~el~  264 (266)
T COG0345         237 LRVLEEDGFRGAVIEAVEAAYKRSEELG  264 (266)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999985

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=1.3e-55  Score=376.82  Aligned_cols=263  Identities=33%  Similarity=0.555  Sum_probs=241.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      +||+|||+|+||.+|+.+|+++|+..+.+|++| +|++++++.+.+ .|+..+.++.+++++||+||+||||+++.+++.
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~   81 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN   81 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence            589999999999999999999997667789999 999999988876 788777788888999999999999999999998


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      ++.. .++++.-+++-.+|+ ++++|+++++ ..+++|+|||+|..+|+|++.++++++.++++.+.++.+|+++|.+++
T Consensus        82 ~l~~-~~~~~~lvISi~AGi-~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~  159 (272)
T PRK12491         82 QIKD-QIKNDVIVVTIAAGK-SIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEV  159 (272)
T ss_pred             HHHH-hhcCCcEEEEeCCCC-cHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEE
Confidence            8821 111112234555999 9999999997 368999999999999999999999999999999999999999999988


Q ss_pred             cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866          169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG  248 (276)
Q Consensus       169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~  248 (276)
                      ++|+++|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+++++.+++.+|.++++.|+||||+|++|
T Consensus       160 ~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~g  239 (272)
T PRK12491        160 VNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEA  239 (272)
T ss_pred             EcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          249 IHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      |+.|++++++..+.+|++++++|++||+
T Consensus       240 l~~le~~~~~~~~~~av~aa~~r~~el~  267 (272)
T PRK12491        240 VATLEEKGLRTAIISAMKRCTQKSMEMS  267 (272)
T ss_pred             HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999985

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=100.00  E-value=7.8e-51  Score=346.40  Aligned_cols=259  Identities=35%  Similarity=0.559  Sum_probs=232.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |+.|||+|||+|+||++|+.+|.+++...+++|+++ +|++++.      +.....++.++++++|+||+||||+++.++
T Consensus         1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v   73 (260)
T PTZ00431          1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV   73 (260)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence            567899999999999999999999986566679999 9987542      444556777888899999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      +.++.. -+ +.+.+++..+|+ +.+.++++++. .+++|+|||+|..+++|.+.+++.++.+++..+.++++|+.+|.+
T Consensus        74 l~~i~~-~l-~~~~iIS~~aGi-~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~  150 (260)
T PTZ00431         74 LLEIKP-YL-GSKLLISICGGL-NLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGII  150 (260)
T ss_pred             HHHHHh-hc-cCCEEEEEeCCc-cHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcE
Confidence            999821 01 113344555999 99999999873 578999999999999999999988888899999999999999999


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      ++++|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|+++++.+++.+|.++++.|+||||+|+
T Consensus       151 ~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~  230 (260)
T PTZ00431        151 QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITI  230 (260)
T ss_pred             EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHH
Confidence            88899999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          247 AGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      +||+.|++.||+..+.+|++++++|++||+
T Consensus       231 ~gl~~le~~g~~~~~~~a~~aa~~r~~~l~  260 (260)
T PTZ00431        231 VGLYTLEKHAFKYTVMDAVESACQKSKSMH  260 (260)
T ss_pred             HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999985

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=3.9e-50  Score=344.97  Aligned_cols=263  Identities=19%  Similarity=0.259  Sum_probs=232.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      |+||+|||+|+||.+|+.+|.++|.+.+.+|++| +|++ ++.+.+.. . ++.++.++.++++++|+||+||||+.+.+
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~   79 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP   79 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence            4689999999999999999999984445689999 7754 55555544 3 34556677788899999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      ++.++.. .+.++..+++-.+|+ +.++|+++++..+++|+|||+|+.+++|++.++++++.++++.+.++.+|+++|.+
T Consensus        80 vl~~l~~-~l~~~~~ivS~~aGi-~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~  157 (277)
T PRK06928         80 LLKDCAP-VLTPDRHVVSIAAGV-SLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHV  157 (277)
T ss_pred             HHHHHHh-hcCCCCEEEEECCCC-CHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCE
Confidence            9988821 111113345555999 99999999986789999999999999999999988889999999999999999999


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT  245 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~-Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t  245 (276)
                      ++++|+++|.+++++||+|+|++.++++|++++++. |++++++++++.+++.|+++++.+++.+|.++++.|+||||+|
T Consensus       158 ~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT  237 (277)
T PRK06928        158 MTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGIT  237 (277)
T ss_pred             EEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHH
Confidence            888999999999999999999999999999999999 7999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          246 IAGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       246 ~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      ++||+.|++ ++++.+.++++++++|+++++
T Consensus       238 ~~gl~~le~-~~~~~~~~~~~~a~~r~~~~~  267 (277)
T PRK06928        238 AEGAEVIQA-QLPQFFDELLDRTQKKYASSK  267 (277)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999997 999999999999999999873

>PLN02688 pyrroline-5-carboxylate reductase

Probab=100.00  E-value=7.4e-48  Score=330.03  Aligned_cols=264  Identities=64%  Similarity=0.974  Sum_probs=239.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                      |||+|||+|+||.+|+++|+++|++++.+|++|.+|++++.+.+.+.|+..+.++.+++++||+||+||||+++++++.+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~   80 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE   80 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence            68999999999999999999999767778887658999999888888998888888889999999999999999999987


Q ss_pred             HhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEcC
Q 023866           91 EEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD  170 (276)
Q Consensus        91 ~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~  170 (276)
                      +.. .+.+++.+++..+|+ +.+.++++++..+++|+|||+|..++.+.+.++.+.+.+++.++.++++|+.+|.+++++
T Consensus        81 l~~-~~~~~~~iIs~~~g~-~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~  158 (266)
T PLN02688         81 LRP-LLSKDKLLVSVAAGI-TLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVD  158 (266)
T ss_pred             HHh-hcCCCCEEEEecCCC-cHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence            721 122223345555888 899999888755899999999999999999888888888999999999999999987889


Q ss_pred             CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 023866          171 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH  250 (276)
Q Consensus       171 e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~  250 (276)
                      |+++|.+++++|++|+|++.+++++.+++.+.|+|++++++++.+++.|+++++.+++.+|.++++.++||||+|+++++
T Consensus       159 e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~  238 (266)
T PLN02688        159 EKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVH  238 (266)
T ss_pred             HHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          251 ELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       251 ~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      .|++.|++..+.+|++++++|++||+
T Consensus       239 ~l~~~g~~~~~~~a~~~~~~r~~~~~  264 (266)
T PLN02688        239 ELEKGGFRAALMNAVVAAAKRSRELS  264 (266)
T ss_pred             HHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999985

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=1.1e-47  Score=330.66  Aligned_cols=266  Identities=30%  Similarity=0.459  Sum_probs=237.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      |+.|||+|||+|+||.+|+++|+++|.+.+.+|++| +|++ ++++.+.. .|+..+.++.+++++||+||+||||+++.
T Consensus         1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~   79 (279)
T PRK07679          1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA   79 (279)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence            566899999999999999999999984455699999 9976 46677766 58887888888889999999999999999


Q ss_pred             HHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcC
Q 023866           86 AAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG  164 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G  164 (276)
                      +++.++.. .+.+++.+++..+|+ +.++++++++ +.+++|.|||+|...+.+.+.+++++..+++.++.++++|+.+|
T Consensus        80 ~vl~~l~~-~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G  157 (279)
T PRK07679         80 EALIPFKE-YIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIG  157 (279)
T ss_pred             HHHHHHHh-hcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence            99988731 122222344444899 9999999887 46899999999999999999998888888999999999999999


Q ss_pred             ceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCch
Q 023866          165 KIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT  244 (276)
Q Consensus       165 ~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~  244 (276)
                      .+++++|+++|.+++++||+|+|++.+++++.+++++.|+|++++++++.+++.|++.++.+++.+|..+++++++|+|+
T Consensus       158 ~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~  237 (279)
T PRK07679        158 LVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGT  237 (279)
T ss_pred             cEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchH
Confidence            99888999999999999999999999999999999999999999999999999999999987788999999999999999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          245 TIAGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       245 t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      |+++|+.|++.+|+..+.+|++++++|++||+
T Consensus       238 t~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~  269 (279)
T PRK07679        238 TEAGIEVLQEHRFQQALISCITQATQRSHNLG  269 (279)
T ss_pred             HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999985

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=2.2e-45  Score=314.91  Aligned_cols=261  Identities=44%  Similarity=0.686  Sum_probs=235.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      +|||+|||+|+||++++.+|.++|+ .+.+|++| +|++++.+.+.+ .|+.+..++.+++.++|+||+||||+++.+++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~   79 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL   79 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence            5799999999999999999999883 33489999 999999988877 48877778888889999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~  167 (276)
                      +++... +  ++.+++..+|+ +.+.++++++ +.+++|+|||+|..++.+.+.++++.+.+++.++.++.+|+.+|..+
T Consensus        80 ~~l~~~-~--~~~vvs~~~gi-~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~  155 (267)
T PRK11880         80 SELKGQ-L--DKLVVSIAAGV-TLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVV  155 (267)
T ss_pred             HHHHhh-c--CCEEEEecCCC-CHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEE
Confidence            988310 0  12345555899 9999999887 57899999999999999999888888889999999999999999875


Q ss_pred             Ec-CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          168 RA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       168 ~~-~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      ++ +|+++|.+++++||+|+|++.+++++.+++.+.|++++++++++.+++.|+++++.+.+.+|+++++.+++|||+|+
T Consensus       156 ~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~  235 (267)
T PRK11880        156 WVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTI  235 (267)
T ss_pred             EECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHH
Confidence            55 59999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          247 AGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      ++++.|++.|+++.+.++++++++|+++|+
T Consensus       236 ~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~  265 (267)
T PRK11880        236 AALRVLEEKGLRAAVIEAVQAAAKRSKELG  265 (267)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999986

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-46  Score=303.50  Aligned_cols=263  Identities=51%  Similarity=0.743  Sum_probs=237.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-HHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |++||||+|+|..++++++..+|.+.+++++.+ -.+...... ++..|+..+.++.+.++.+|++|++|+|+.+.+++.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls   79 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS   79 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence            689999999999999999999999888999988 554444444 667899887778999999999999999999999998


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      ++.. .+..++-+++..+|+ +++.+++.++ ..+++|.|||+|..+++|.+++..+.....++.+.++++|+.+|.+..
T Consensus        80 ~~~~-~~~~~~iivS~aaG~-tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~e  157 (267)
T KOG3124|consen   80 EIKP-KVSKGKIIVSVAAGK-TLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEE  157 (267)
T ss_pred             cCcc-ccccceEEEEEeecc-cHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCccee
Confidence            8821 011111222334999 9999999987 578999999999999999998888888899999999999999999999


Q ss_pred             cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866          169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG  248 (276)
Q Consensus       169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~  248 (276)
                      +.|+.+|++|+++|++|+|.+..+++|.|.++++|+|++.++++..+++.|+++++.+++.||..|+|+++||+|+|+.+
T Consensus       158 vpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~g  237 (267)
T KOG3124|consen  158 VPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYG  237 (267)
T ss_pred             CcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          249 IHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      +..||+.+|+..+++|++++..|++||+
T Consensus       238 lh~LE~ggfRs~linaVeaa~~r~~el~  265 (267)
T KOG3124|consen  238 LHALEKGGFRSGLINAVEAATKRARELG  265 (267)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999985

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=100.00  E-value=5.1e-45  Score=307.74  Aligned_cols=241  Identities=44%  Similarity=0.654  Sum_probs=219.1

Q ss_pred             hCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCc
Q 023866           31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL  109 (276)
Q Consensus        31 ~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~  109 (276)
                      +.|.+++.+|++| +|++++++.+.+ .|+....++.++++++|+||+||||+++.+++.++.. .+..++.+++..+|+
T Consensus         3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~-~~~~~~~ivS~~agi   80 (245)
T TIGR00112         3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKS-EKGKDKLLISIAAGV   80 (245)
T ss_pred             CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhh-hccCCCEEEEecCCC
Confidence            4555677899999 999999988866 6888888888889999999999999999999998831 111123455666999


Q ss_pred             ccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEcCCCCchhhhhhcCchHHHH
Q 023866          110 QRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYI  188 (276)
Q Consensus       110 ~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~~p~~~  188 (276)
                       +++.|+++++. .+++|+|||+|..+++|++.++++++.++++.+.++++|+.+|.+++++|+++|.+++++||+|+|+
T Consensus        81 -~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~  159 (245)
T TIGR00112        81 -TLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYV  159 (245)
T ss_pred             -CHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHH
Confidence             99999999974 6899999999999999999999998899999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCChHHHHHHHHHHH
Q 023866          189 FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAA  268 (276)
Q Consensus       189 ~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~~~~~~~~~a~~~~  268 (276)
                      +.++++|.+++++.|++++++++++.+++.|+++++.+++.+|+++++.++||||+|++||+.|++.+|++.+.+|++++
T Consensus       160 ~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa  239 (245)
T TIGR00112       160 FLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAA  239 (245)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 023866          269 AKRSRE  274 (276)
Q Consensus       269 ~~r~~~  274 (276)
                      ++|++|
T Consensus       240 ~~r~~e  245 (245)
T TIGR00112       240 VRRSRE  245 (245)
T ss_pred             HHHhcC
Confidence            999976

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK07680 late competence protein ComER; Validated

Probab=100.00  E-value=6.8e-44  Score=306.30  Aligned_cols=259  Identities=19%  Similarity=0.326  Sum_probs=228.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |+|+|||+|+||++|+.+|.++|++.+.+|++| +|++++.+.+.+ . |+....++.+++.++|+||+||||+++.+++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence            589999999999999999999986566789999 999999888876 3 7777778888889999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      +++.. .+.++..+++-.+|+ +.+.++++++ .+++|+|||++...+.|.+.++.++..+++.++.+.++|+.+|..++
T Consensus        80 ~~l~~-~l~~~~~iis~~ag~-~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~  156 (273)
T PRK07680         80 QKLAP-HLTDEHCLVSITSPI-SVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLV  156 (273)
T ss_pred             HHHHh-hcCCCCEEEEECCCC-CHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEE
Confidence            88721 111112233444888 9999999887 47999999999878889888777777788889999999999998888


Q ss_pred             cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHH
Q 023866          169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA  247 (276)
Q Consensus       169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~  247 (276)
                      ++|+.++..++++||+|+|++.++++|.+++.+ .|++++++++++.+++.|+++++.+++.+|+++++.++||||+|++
T Consensus       157 i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~  236 (273)
T PRK07680        157 IEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGE  236 (273)
T ss_pred             EChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHH
Confidence            899999999999999999999999999999987 8999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHhh
Q 023866          248 GIHELEKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       248 ~l~~l~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      |++.|++ ++++.+.++++++.+|..+
T Consensus       237 gl~~le~-~~~~~~~~~~~~~~~~~~~  262 (273)
T PRK07680        237 GIKVLEE-EVGDMFHRLFQRTHEKFDE  262 (273)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999 7999999999999999654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=1.9e-42  Score=295.07  Aligned_cols=250  Identities=22%  Similarity=0.307  Sum_probs=219.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||||||+|+||++|+++|.++|+ ...++.+| +|++++.+.+.+ . ++..+.++.++++++|+||+||||+++.+++
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence            589999999999999999999886 44567899 999999988877 3 5777778888889999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-  166 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-  166 (276)
                      .++   .+.+++.+++..+|+ +.+.++++++ ..+++|.|||+|...+.|.+.++++       .+.++++|+.+|.. 
T Consensus        79 ~~l---~~~~~~~vis~~ag~-~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~  147 (258)
T PRK06476         79 RAL---RFRPGQTVISVIAAT-DRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAV  147 (258)
T ss_pred             HHh---ccCCCCEEEEECCCC-CHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcE
Confidence            877   233334455655888 9999999987 3689999999999999998887653       25889999999987 


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHhcCCCCchH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTT  245 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~-~~~~~~~~~~l~~~v~sp~g~t  245 (276)
                      +..+|+++|.+++++ ++|+|++.+++++.+++++.|+|++++++++.+++.|++++ +.+++.+|++|++.|+||||+|
T Consensus       148 ~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT  226 (258)
T PRK06476        148 ECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLN  226 (258)
T ss_pred             EECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchH
Confidence            555688999999986 58999999999999999999999999999999999999999 5777789999999999999999


Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHhh
Q 023866          246 IAGIHELEKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       246 ~~~l~~l~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      ++||+.|++.|++.++.++++++++|++-
T Consensus       227 ~~gl~~le~~~~~~~~~~a~~aa~~r~~~  255 (258)
T PRK06476        227 EQVLNDFSRQGGYAALTDALDRVLRRING  255 (258)
T ss_pred             HHHHHHHHHCChHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999863

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=100.00  E-value=1.6e-41  Score=287.50  Aligned_cols=242  Identities=24%  Similarity=0.402  Sum_probs=211.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccH
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      +|+.+||+|||+|+||.+++.+|.+.|+....+++++ +| ++++.+.+.+ .++..+.++.++++++|+||+||||+.+
T Consensus         1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~   79 (245)
T PRK07634          1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH   79 (245)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH
Confidence            3567899999999999999999998874333457788 77 5788888776 6877777888888999999999999999


Q ss_pred             HHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhc
Q 023866           85 KAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV  163 (276)
Q Consensus        85 ~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~  163 (276)
                      ++++.++..  ..+++.+++..+|+ +.+.|+++++. .+++|+|||++..++.|.+.++...+.+++..+.++++|+.+
T Consensus        80 ~~v~~~l~~--~~~~~~vis~~~gi-~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~  156 (245)
T PRK07634         80 EELLAELSP--LLSNQLVVTVAAGI-GPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGI  156 (245)
T ss_pred             HHHHHHHHh--hccCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhC
Confidence            999988721  11113344555899 99999999974 589999999999999999888888888999999999999999


Q ss_pred             CceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCc
Q 023866          164 GKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG  243 (276)
Q Consensus       164 G~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g  243 (276)
                      |.++++.|++++.+++++||+|+|++.+++++.+++++.|+|++++++++.+++.|+++++.+ +.+|++|++.++||||
T Consensus       157 G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG  235 (245)
T PRK07634        157 GTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGG  235 (245)
T ss_pred             CCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCCh
Confidence            998778899999999999999999999999999999999999999999999999999999875 5799999999999999


Q ss_pred             hHHHHHHHHH
Q 023866          244 TTIAGIHELE  253 (276)
Q Consensus       244 ~t~~~l~~l~  253 (276)
                      +|++||+.|+
T Consensus       236 ~T~~gl~~l~  245 (245)
T PRK07634        236 STAEGLKALY  245 (245)
T ss_pred             HHHHHHHHhC
Confidence            9999999884

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=100.00  E-value=2.9e-32  Score=236.29  Aligned_cols=219  Identities=16%  Similarity=0.156  Sum_probs=182.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v   87 (276)
                      +.+||+|||+|+||.+++.+|+++|+    +|++++++++++.+.+.+.|+... ++.+++++||+||++|||+ +...+
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v   76 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY   76 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence            45899999999999999999999998    787652555566677777788764 5778889999999999999 66666


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-c------cCcceEee-cCCCCCHHHHHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGK  158 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-~------~~g~~~i~-~~~~~~~~~~~~v~~  158 (276)
                      +.++.. .+++ ..+++-.+|+ +++.++..+| +.+++|+|||+|.. +      |.|++.++ .++..+.++.+.+..
T Consensus        77 ~~ei~~-~l~~-g~iVs~aaG~-~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~  153 (314)
T TIGR00465        77 EAEIQP-LLKE-GKTLGFSHGF-NIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA  153 (314)
T ss_pred             HHHHHh-hCCC-CcEEEEeCCc-cHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence            666621 1111 1234444899 9999998887 46899999999998 5      99998885 777788999999999


Q ss_pred             HhhhcCce-------E---EcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 023866          159 LFGSVGKI-------W---RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       159 ll~~~G~~-------~---~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      +|+.+|..       .   ++.|+++|..++++||+|+|++.++++|    ++.|++++.|+.++.+++.|+++++.+++
T Consensus       154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g  229 (314)
T TIGR00465       154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGG  229 (314)
T ss_pred             HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999977       4   6778999999999999999999888777    68999999999999999999999998876


Q ss_pred             CChHHHHHhcCCC
Q 023866          229 KHPGQLKDDVASP  241 (276)
Q Consensus       229 ~~~~~l~~~v~sp  241 (276)
                      .  ..+++.+++.
T Consensus       230 ~--~~l~~~Vsst  240 (314)
T TIGR00465       230 I--TGMRDRISNT  240 (314)
T ss_pred             H--HHHHHHcCCH
Confidence            5  6899999864

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.96  E-value=1e-27  Score=232.04  Aligned_cols=249  Identities=15%  Similarity=0.158  Sum_probs=194.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      .||+|||+|+||.+++++|.+.|+  ..+|++| ||++++.+.+.+.|+.  ...+..++++++|+||+|||++.+.+++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl   80 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVL   80 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHH
Confidence            689999999999999999999884  2279999 9999998888777764  3445667788999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCccc---HHHHHHHcCCCcEEEEecCccccccC--------------cceEeecCCCCCHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTGHSRFIRVMPNTPSAVGE--------------AATVMSLGGTATEE  151 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~~~~vv~~~p~~~~~~~~--------------g~~~i~~~~~~~~~  151 (276)
                      .++.. -+. ...++...+++ +   .+.+++.++. ..+|+|||+|.....              +.+.+++..+.+++
T Consensus        81 ~~l~~-~~~-~~~ii~d~~sv-k~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~  156 (735)
T PRK14806         81 ADLKP-LLS-EHAIVTDVGST-KGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA  156 (735)
T ss_pred             HHHHH-hcC-CCcEEEEcCCC-chHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence            88821 010 01233333555 4   5667777654 367899999975221              23456777777889


Q ss_pred             HHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 023866          152 DGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK  229 (276)
Q Consensus       152 ~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~-~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~  229 (276)
                      ..+.+.++|+.+|.. +++++++||.++|++||+|| |.+.+++++.+    .|.. ..+.++..++|+++++++.   .
T Consensus       157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~----~~~~-~~~~~~a~~~f~~~tRia~---~  228 (735)
T PRK14806        157 ALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLAN----REDN-LDIFRYAAGGFRDFTRIAA---S  228 (735)
T ss_pred             HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhh----cCCh-hHHHhhhccchhccccccc---C
Confidence            999999999999975 78999999999999999999 55666666544    4432 3578999999999999984   6


Q ss_pred             ChHHHHHhcCCCCchHHHHHHHHHh--CChHHHHH----HHHHHHHHHHhh
Q 023866          230 HPGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       230 ~~~~l~~~v~sp~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +|++|.+.+++|++++.++|+.|++  .+++..+.    +.+.+.++++++
T Consensus       229 ~p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~  279 (735)
T PRK14806        229 DPVMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA  279 (735)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988  58888887    467777766654

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.95  E-value=2.9e-27  Score=210.35  Aligned_cols=248  Identities=15%  Similarity=0.167  Sum_probs=185.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce----eccCchhhhcCCCEEEEeeCcccHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++|+|||+|.||++|+.+|.++|+    ++.+| ++++++.+.....+..    ..++..+++++||+||+|||++.+.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~   75 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA   75 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence            479999999999999999999998    88888 7776655444443332    23455677899999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcccH---HHHHHHcC-CCcEEEEecCccc-----------cccCcceEeecCCCCCHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEE  151 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~-~~~vv~~~p~~~~-----------~~~~g~~~i~~~~~~~~~  151 (276)
                      ++.++....+++ ..++...+++ +.   +.+++.++ ..+++..||....           .+....+++++.+..+++
T Consensus        76 vl~~l~~~~l~~-~~ivtDv~Sv-K~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~  153 (359)
T PRK06545         76 LLAELADLELKP-GVIVTDVGSV-KGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD  153 (359)
T ss_pred             HHHHHhhcCCCC-CcEEEeCccc-cHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence            998882101111 1233332444 43   34455444 3567777775332           122334677877778899


Q ss_pred             HHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023866          152 DGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH  230 (276)
Q Consensus       152 ~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~  230 (276)
                      .++.++++|+.+|.. +++++++||.++|+++|+|+|++.   +|   +...+.+.+.+.+++.++|+++++++.   .+
T Consensus       154 ~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~  224 (359)
T PRK06545        154 AVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SD  224 (359)
T ss_pred             HHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CC
Confidence            999999999999976 689999999999999999999875   33   344566778889999999999999984   69


Q ss_pred             hHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          231 PGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       231 ~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      |.+|.+.+++|++.+.+.|+.+++.  .++..+.    +.+.+.++++++
T Consensus       225 p~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~  274 (359)
T PRK06545        225 PGMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA  274 (359)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999988764  5666664    357777777654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.95  E-value=3.2e-26  Score=197.18  Aligned_cols=250  Identities=14%  Similarity=0.148  Sum_probs=181.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||+|||+|.||++|+..|.++|+    +|++| +|++++.+.+.+.|.. ...+..+.+++||+||+|+|++.+.+++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~   75 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE   75 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence            589999999999999999999998    99999 9999999888887753 23334456789999999999999988888


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-----------ccCcceEeecCCCCCHHHHHHHH
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTATEEDGELIG  157 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-----------~~~g~~~i~~~~~~~~~~~~~v~  157 (276)
                      ++.. -+. +..++...+++ +...++.... ..++++.||.....           +......+++.+..+++.++.++
T Consensus        76 ~l~~-~l~-~~~ii~d~~Sv-k~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~  152 (279)
T PRK07417         76 QLIP-ALP-PEAIVTDVGSV-KAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE  152 (279)
T ss_pred             HHHH-hCC-CCcEEEeCcch-HHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence            8721 011 01223332555 5555554433 23688888854322           11223456677777889999999


Q ss_pred             HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866          158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQL  234 (276)
Q Consensus       158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~-~Gl~~-~~a~~~~~~~~~g~~~~~~~~~~~~~~l  234 (276)
                      ++++.+|.. +++++++||..+++++++|+|++.   +++..... ..-+. +.+..+..++|+++++++.   .+|++|
T Consensus       153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~---~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w  226 (279)
T PRK07417        153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSA---ALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELG  226 (279)
T ss_pred             HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHH---HHHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHH
Confidence            999999976 789999999999999999998764   33333221 11111 2235789999999999874   689999


Q ss_pred             HHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          235 KDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       235 ~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      .+.+.++.....+.|+.+++.  .++..|.    +++.+.++++++
T Consensus       227 ~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~  272 (279)
T PRK07417        227 VMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE  272 (279)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999998888777888877664  5555554    466677776664

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.94  E-value=1.6e-25  Score=192.61  Aligned_cols=248  Identities=17%  Similarity=0.180  Sum_probs=181.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||+|||+|+||++|+.+|.++|+  ..+|++| ||++++.+.+.+.|+. ...+..++. ++|+||+|||++.+.+++.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~   76 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP   76 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence            589999999999999999999985  3368888 9999998888777764 344556654 5999999999999999998


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcC---CCcEEEEecCccc------c----ccCc-ceEeecCCCCCHHHHHH
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG---HSRFIRVMPNTPS------A----VGEA-ATVMSLGGTATEEDGEL  155 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~---~~~vv~~~p~~~~------~----~~~g-~~~i~~~~~~~~~~~~~  155 (276)
                      ++..  +.++. ++.. .|. +...+.+.+.   ..++++.||+...      .    ..+| .+++++.++.+++.++.
T Consensus        77 ~l~~--l~~~~-iv~d-~gs-~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~  151 (275)
T PRK08507         77 KLLD--IKENT-TIID-LGS-TKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER  151 (275)
T ss_pred             HHhc--cCCCC-EEEE-Ccc-chHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence            8821  11111 1211 444 3333433332   2478999998532      1    1134 34566666677889999


Q ss_pred             HHHHhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866          156 IGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL  234 (276)
Q Consensus       156 v~~ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l  234 (276)
                      +.++|+.+|. ++++++++||..++++++.|++++.   ++.+... .+.+.+...++..++|++++++..   .+|++|
T Consensus       152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~  224 (275)
T PRK08507        152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMW  224 (275)
T ss_pred             HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHH
Confidence            9999999995 4889999999999999999986543   4555443 466677778999999999999875   689999


Q ss_pred             HHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          235 KDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       235 ~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      .+.+.++.....+.|+.+.+.  .+...+.    +.+.+.++++++
T Consensus       225 ~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~  270 (275)
T PRK08507        225 SDIFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK  270 (275)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999998888887887777664  4555553    456666666654

>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E

Probab=99.93  E-value=2.7e-25  Score=163.06  Aligned_cols=107  Identities=58%  Similarity=0.907  Sum_probs=100.1

Q ss_pred             cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866          169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG  248 (276)
Q Consensus       169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~  248 (276)
                      ++|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|+++++.+++.+|.++++.++||||+|+++
T Consensus         1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g   80 (107)
T PF14748_consen    1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG   80 (107)
T ss_dssp             -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred             CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          249 IHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       249 l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      |+.|++++++..|.++++++++|++||
T Consensus        81 l~~L~~~~~~~~~~~a~~aa~~R~~el  107 (107)
T PF14748_consen   81 LEVLEKGGLRAAIMEALEAAVERAKEL  107 (107)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999987

...

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.93  E-value=3.1e-24  Score=181.74  Aligned_cols=248  Identities=19%  Similarity=0.196  Sum_probs=175.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      +||+|||+|.||.+||.+|+++||    ++++| ||++++ .+.+++.|...+.++.++++.+|+||+||++. ++++|+
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~   75 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL   75 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence            589999999999999999999999    99999 999999 66677789999999999999999999999755 789998


Q ss_pred             HHHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCc--cccccCc-ceEeecCCCCCHHHHHHHHH
Q 023866           89 ITEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNT--PSAVGEA-ATVMSLGGTATEEDGELIGK  158 (276)
Q Consensus        89 ~~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~--~~~~~~g-~~~i~~~~~~~~~~~~~v~~  158 (276)
                      ..-.  ..+.+++.-++.. +++ +++   ++.+.+.  +..++.+ |-.  +.....| .++++.+   +++.++++++
T Consensus        76 ~g~~g~~~~~~~G~i~IDm-STi-sp~~a~~~a~~~~~~G~~~lDA-PVsGg~~~A~~GtLtimvGG---~~~~f~r~~p  149 (286)
T COG2084          76 FGENGLLEGLKPGAIVIDM-STI-SPETARELAAALAAKGLEFLDA-PVSGGVPGAAAGTLTIMVGG---DAEAFERAKP  149 (286)
T ss_pred             hCccchhhcCCCCCEEEEC-CCC-CHHHHHHHHHHHHhcCCcEEec-CccCCchhhhhCceEEEeCC---CHHHHHHHHH
Confidence            6420  0111121222222 555 543   3433332  2334432 111  1111223 4556654   8999999999


Q ss_pred             HhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866          159 LFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL  234 (276)
Q Consensus       159 ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l  234 (276)
                      +|+.+|+ .+++++.---..+.++  .+.++...+.++.|+   +.+.|+|++..++++..+..+++.+..   ..+. +
T Consensus       150 vl~~~g~~i~~~G~~G~G~~~Kl~--nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~---~~~~-m  223 (286)
T COG2084         150 VLEAMGKNIVHVGPVGAGQAAKLA--NNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN---YGPR-M  223 (286)
T ss_pred             HHHHhcCceEEECCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh---hcch-h
Confidence            9999997 5999996444444443  234556667777777   469999999999999999877776643   2334 4


Q ss_pred             HHhcCCCCchHHHHHHHHH-------hCChHHHHHHHHHHHHHHHhhc
Q 023866          235 KDDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       235 ~~~v~sp~g~t~~~l~~l~-------~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .+.-++|++.....+++|.       +.++.-.+...+.+.|+.....
T Consensus       224 ~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~  271 (286)
T COG2084         224 LEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAA  271 (286)
T ss_pred             hcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhc
Confidence            4554699999999888763       3477777778888888776543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.93  E-value=3.3e-24  Score=194.73  Aligned_cols=243  Identities=13%  Similarity=0.177  Sum_probs=185.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||+||| +|.||.+++..|.++|+    +|++| +|++++.+.+. +.|+....+..+++.++|+||+|+|++.+.+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl   75 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI   75 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence            6899997 89999999999999998    99999 99988865444 468877677778889999999999999999999


Q ss_pred             HHHhhccccccCCcccCC------CCc--ccHHHHHHHcC-CCcEEEEecCc----cccccCcceEeecCCCCCHHHHHH
Q 023866           89 ITEEAFGFCCCRSEIERP------SGL--QRWSRWVEWTG-HSRFIRVMPNT----PSAVGEAATVMSLGGTATEEDGEL  155 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~------~g~--~~~~~l~~~l~-~~~vv~~~p~~----~~~~~~g~~~i~~~~~~~~~~~~~  155 (276)
                      .++        .+.+.++      +++  ...+.+++.++ +.+++++||..    |...++ ...++++++.+++..+.
T Consensus        76 ~~l--------~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~-~~il~p~~~~~~~~~~~  146 (437)
T PRK08655         76 KEV--------APHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQ-VVILTPTEKRSNPWFDK  146 (437)
T ss_pred             HHH--------HhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCC-EEEEecCCCCCHHHHHH
Confidence            888        3333332      222  03466777776 46789998652    322233 34466666678889999


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCC
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKH  230 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~----~~~~~~~~~~  230 (276)
                      +.++|+.+|.. +++++++||.+++.+++.|++++.   +++.+..+.|++.+++.++..++|+..    ++++   +.+
T Consensus       147 v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~  220 (437)
T PRK08655        147 VKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQN  220 (437)
T ss_pred             HHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCC
Confidence            99999999965 779999999999999999998655   466666788999999999999999986    5554   368


Q ss_pred             hHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          231 PGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       231 ~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      |.+|.+...++. ...+.++.+.+.  .++..+.    +.+.+.++++++
T Consensus       221 p~lw~dI~~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~~  269 (437)
T PRK08655        221 PYLYASIQMNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAAK  269 (437)
T ss_pred             HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999988876 577777776553  4555554    455555655543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.92  E-value=7.3e-24  Score=185.08  Aligned_cols=254  Identities=13%  Similarity=0.182  Sum_probs=176.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      .+||+|||+|.||.+++..|.+.|+  ..+|++| +|++++.+.+.+.|+  ....+..+++++||+||+|+|++...++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v   82 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV   82 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence            4799999999999999999999884  2379999 999999888877775  2445666778999999999999988888


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHH---HHHHcCC-CcEEEEecCccccc-c----------CcceEeecCCCCCHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSR---WVEWTGH-SRFIRVMPNTPSAV-G----------EAATVMSLGGTATEED  152 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~---l~~~l~~-~~vv~~~p~~~~~~-~----------~g~~~i~~~~~~~~~~  152 (276)
                      +.++.. .+++ ..++...+++ +...   +.+.++. .+++..||...... |          .....+++..+.+++.
T Consensus        83 ~~~l~~-~l~~-~~iv~dvgs~-k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~  159 (307)
T PRK07502         83 AAEIAP-HLKP-GAIVTDVGSV-KASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA  159 (307)
T ss_pred             HHHHHh-hCCC-CCEEEeCccc-hHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence            887720 0111 1122222344 4333   3334432 23444444432111 1          1123455555667889


Q ss_pred             HHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866          153 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP  231 (276)
Q Consensus       153 ~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~  231 (276)
                      ++.+.++|+.+|.. +++++++||.++|+++++|++++..+......  ....+.+....+..++|+++.++..   .+|
T Consensus       160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~--~~~~~~~~~~~~~~~gfrd~tRia~---~~~  234 (307)
T PRK07502        160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADD--LERVTESEVIKYSASGFRDFTRIAA---SDP  234 (307)
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhh--hcccchHHHHHhccccccccccccc---CCh
Confidence            99999999999976 78899999999999999999987654322211  1233344456788999999888764   689


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          232 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       232 ~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      ++|.+.+.++.....+.|+.+++.  .++..|.    +.+.+.++++++
T Consensus       235 ~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~  283 (307)
T PRK07502        235 TMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA  283 (307)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999988888877888887664  5565554    456666666554

>PLN02256 arogenate dehydrogenase

Probab=99.92  E-value=3.5e-23  Score=179.26  Aligned_cols=246  Identities=13%  Similarity=0.083  Sum_probs=178.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCcccHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~   86 (276)
                      +..++|+|||+|.||++++.+|.+.|+    +|++| ++++.. +...+.|+....+..+++ .++|+||+|||++.+.+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~  107 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA  107 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence            467899999999999999999999998    99999 888643 444457877666677765 47999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCC--CcccHHHHHHHcC-CCcEEEEecCccccccCc----ceEeecC-----CCCCHHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERPS--GLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEA----ATVMSLG-----GTATEEDGE  154 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~--g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g----~~~i~~~-----~~~~~~~~~  154 (276)
                      ++.++....+.++.-+++-.+  |. ..+.+++.++ +.+++++||+.+.+.+.+    ...+...     +..+++..+
T Consensus       108 vl~~l~~~~l~~~~iviDv~SvK~~-~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  186 (304)
T PLN02256        108 VLRSLPLQRLKRSTLFVDVLSVKEF-PKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCE  186 (304)
T ss_pred             HHHhhhhhccCCCCEEEecCCchHH-HHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHH
Confidence            998872111111111222222  44 5677888776 467999999988775432    2222211     345678899


Q ss_pred             HHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChH
Q 023866          155 LIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPG  232 (276)
Q Consensus       155 ~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~  232 (276)
                      .+.++|+.+|.. +.+++++||.++|.+++.|+.++.   +|.+.    ..+   ...+..++|+...+++.+ ...+|.
T Consensus       187 ~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~~----~~~---~~~~~~~gfrd~tria~r~~~~~p~  256 (304)
T PLN02256        187 RFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGKM----ELE---STPINTKGYETLLRLVENTSSDSFD  256 (304)
T ss_pred             HHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHHc----CCc---ccccccccHHHHHHHHHhhcCCCHH
Confidence            999999999965 889999999999999999997654   33332    221   147788889999888742 236899


Q ss_pred             HHHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHHH
Q 023866          233 QLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR  271 (276)
Q Consensus       233 ~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~r  271 (276)
                      +|.+.+.++.... +.++.+++.  .++..|..-++..++|
T Consensus       257 lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~  296 (304)
T PLN02256        257 LYYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK  296 (304)
T ss_pred             HHHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999998887777 888888774  6666666666666554

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.91  E-value=8.2e-23  Score=170.26  Aligned_cols=248  Identities=18%  Similarity=0.178  Sum_probs=167.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~v   87 (276)
                      ..++|||||+|+||++|+.+|+++||    .|++| ||+.++.+.|.+.|..++.++.|++++||+||.+|| |.+++++
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v  108 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV  108 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence            36899999999999999999999999    99999 999999999999999999999999999999999997 4578888


Q ss_pred             HHHHh--hccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCccccc-----cCcceEeecCCCCCHHHHHH
Q 023866           88 VITEE--AFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNTPSAV-----GEAATVMSLGGTATEEDGEL  155 (276)
Q Consensus        88 l~~~~--~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~~~~~-----~~g~~~i~~~~~~~~~~~~~  155 (276)
                      +..-.  ..++++.++..-..+.+ ++   .+|++...  +.+++.+    |.+.     .+|...+..+  .+++.++.
T Consensus       109 ~~g~~Gvl~g~~~g~~~~vDmSTi-dp~~s~ei~~~i~~~~~~~vDA----PVSGg~~~A~~G~Ltimag--Gde~~~~~  181 (327)
T KOG0409|consen  109 LLGKSGVLSGIRPGKKATVDMSTI-DPDTSLEIAKAISNKGGRFVDA----PVSGGVKGAEEGTLTIMAG--GDEALFEA  181 (327)
T ss_pred             hcCCCcceeeccCCCceEEecccc-CHHHHHHHHHHHHhCCCeEEec----cccCCchhhhcCeEEEEec--CcHHHHHH
Confidence            76531  01111112221111344 33   34544433  3445543    3322     2454444444  48999999


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP  231 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~  231 (276)
                      ..++|+.+|+. ++++.----....++  .+..+...+.+++|+   +.+.|+|.....+++..+-..++.+ .+  .-|
T Consensus       182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~-~~--~~p  256 (327)
T KOG0409|consen  182 ASPVFKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF-YN--PVP  256 (327)
T ss_pred             HHHHHHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH-hC--cCc
Confidence            99999999965 888873222222221  122345556666776   5699999999999998865554444 32  334


Q ss_pred             HHHHHhcCCCCchHHHHHHHHH-------hCChHHHHHHHHHHHHHHHhh
Q 023866          232 GQLKDDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       232 ~~l~~~v~sp~g~t~~~l~~l~-------~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      . +.+..+.|++.+....++|.       +.+.+-.+...-++.|++.+.
T Consensus       257 ~-m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a  305 (327)
T KOG0409|consen  257 G-MLKGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKA  305 (327)
T ss_pred             h-hhcCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHh
Confidence            4 44555799999988888763       224444555555666666554

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.91  E-value=2e-22  Score=171.68  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=180.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHHHHHHHHHcCceec--cCc-hhhhcCCCEEEEeeCcccH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA-VHSNLKRRDAFESIGVKVL--SDN-NAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~~~~~l~~~g~~~~--~~~-~~~~~~aDvI~lav~~~~~   84 (276)
                      .+++|+|+|+|.||+++++.|.++|+    .+.++ ++++.++.+...+.|+.-.  .+. .+.+.++|+||+|||...+
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~   77 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEAT   77 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCC----eEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHH
Confidence            46899999999999999999999998    77666 1555555555545665421  222 5667789999999999999


Q ss_pred             HHHHHHHhhccccccCCcccCC------CCc--ccHHHHHHHcCC-CcEEEEecCcccc-----ccCcceEeecCCCCCH
Q 023866           85 KAAVITEEAFGFCCCRSEIERP------SGL--QRWSRWVEWTGH-SRFIRVMPNTPSA-----VGEAATVMSLGGTATE  150 (276)
Q Consensus        85 ~~vl~~~~~~~~~~~~~~l~~~------~g~--~~~~~l~~~l~~-~~vv~~~p~~~~~-----~~~g~~~i~~~~~~~~  150 (276)
                      .++++++        .+.+.++      .++  ...+.++++.++ .+++..||....+     +.....++++.+..+.
T Consensus        78 ~~~l~~l--------~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~  149 (279)
T COG0287          78 EEVLKEL--------APHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEK  149 (279)
T ss_pred             HHHHHHh--------cccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCH
Confidence            9999999        5555443      122  023556666653 3688888875441     1233466777776778


Q ss_pred             HHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 023866          151 EDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK  229 (276)
Q Consensus       151 ~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~  229 (276)
                      +.++.+..+|+.+|.. +++++++||..++..++.|++++.   ++.....+.+......+++.+.+|+..+++..   .
T Consensus       150 ~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~  223 (279)
T COG0287         150 EWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---S  223 (279)
T ss_pred             HHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---C
Confidence            8999999999999954 889999999999999999998654   55555555555445578999999999998875   6


Q ss_pred             ChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          230 HPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       230 ~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +|.+|.+...++.....+.+..+.+.  .+...+.    +++.+.++++++
T Consensus       224 ~P~m~~dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~  274 (279)
T COG0287         224 DPEMYADIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK  274 (279)
T ss_pred             ChHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            89999999998888766666665543  2333333    456666766654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.89  E-value=4.3e-21  Score=166.59  Aligned_cols=249  Identities=18%  Similarity=0.153  Sum_probs=167.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~   89 (276)
                      +||+|||+|+||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|++ ++++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~   76 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF   76 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence            589999999999999999999999    99999 99999999998888887788888899999999999987 4788875


Q ss_pred             HHh--hccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHHHHHHHHh
Q 023866           90 TEE--AFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLF  160 (276)
Q Consensus        90 ~~~--~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll  160 (276)
                      ...  ...+.++..++.. +.+ ++   .++.+.+.  +..++.+ |.  .+.....|...+..+  .+++.+++++++|
T Consensus        77 ~~~~i~~~l~~g~lvid~-sT~-~p~~~~~l~~~l~~~g~~~lda-pV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l  151 (296)
T PRK15461         77 GENGVCEGLSRDALVIDM-STI-HPLQTDKLIADMQAKGFSMMDV-PVGRTSDNAITGTLLLLAG--GTAEQVERATPIL  151 (296)
T ss_pred             CcccHhhcCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEc-cCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHH
Confidence            321  0011111112222 333 33   34444443  3344433 21  122222344433333  3789999999999


Q ss_pred             hhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 023866          161 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD  236 (276)
Q Consensus       161 ~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~  236 (276)
                      +.+|.. +++++..-...+.+.  .+.+.......+.|+   +.+.|+|++...+++..+..++..+..   ..+..+.+
T Consensus       152 ~~~g~~~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~  226 (296)
T PRK15461        152 MAMGNELINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLK  226 (296)
T ss_pred             HHHcCCeEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhcc
Confidence            999965 778774322333332  222333444455555   569999999999999887666655432   23434454


Q ss_pred             hcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          237 DVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       237 ~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      .-++|++++....+++       ++.+++..+.++..+.|+++.+
T Consensus       227 ~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~  271 (296)
T PRK15461        227 GDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARA  271 (296)
T ss_pred             CCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence            5567888777776654       4568888888999988888765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.88  E-value=1.1e-20  Score=163.77  Aligned_cols=209  Identities=16%  Similarity=0.105  Sum_probs=147.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-HHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      ..+.++|||||+|+||.+++.+|+++|+    +|.++ +|+.++. +...+.|+... +..+++++||+||++||++...
T Consensus        14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~   87 (330)
T PRK05479         14 LIKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQA   87 (330)
T ss_pred             hhCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHH
Confidence            3457899999999999999999999999    99888 6664443 44445787765 7889999999999999999888


Q ss_pred             HHH-HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-------ccCcceEee-cCCCCCHHHHHH
Q 023866           86 AAV-ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGEL  155 (276)
Q Consensus        86 ~vl-~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~  155 (276)
                      +++ .++. ..+++ ..++...+|. ++..++.+.| +.++++++||+|..       .|.|++.++ .....+.++.+.
T Consensus        88 ~V~~~~I~-~~Lk~-g~iL~~a~G~-~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~  164 (330)
T PRK05479         88 EVYEEEIE-PNLKE-GAALAFAHGF-NIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDL  164 (330)
T ss_pred             HHHHHHHH-hcCCC-CCEEEECCCC-ChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHH
Confidence            888 6662 01111 1233333788 8888877665 57899999999998       899998877 666678999999


Q ss_pred             HHHHhhhcCce-E-----EcC-CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 023866          156 IGKLFGSVGKI-W-----RAD-EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT  225 (276)
Q Consensus       156 v~~ll~~~G~~-~-----~~~-e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~  225 (276)
                      +..+++.+|.. .     ... |.+-|.+.. ......++..++.+-.+..++.|.+++.|+-=..+=++-...++.
T Consensus       165 a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~i~dl~~  240 (330)
T PRK05479        165 ALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHELKLIVDLIY  240 (330)
T ss_pred             HHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999953 2     222 322333322 111223444455555666789999999886543333344444443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.88  E-value=6.1e-21  Score=170.35  Aligned_cols=235  Identities=12%  Similarity=0.087  Sum_probs=169.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ..++|+||| +|.||++++..|.++|+    +|++| +|+..             .+..+++.+||+||+|||+....++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~  158 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEEV  158 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHH
Confidence            568999998 99999999999999999    99999 98631             2445677899999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCccc---HHHHHHHcCCCcEEEEecCcccccc--CcceEeecCCCCCHHHHHHHHHHhhh
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTGHSRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~~~~vv~~~p~~~~~~~--~g~~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      +.++.  .+.+ ..++...+++ .   ...+.+.++ .+++..||..+....  .+...+. .+..+++.++.+.++++.
T Consensus       159 ~~~l~--~l~~-~~iv~Dv~Sv-K~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~  232 (374)
T PRK11199        159 IARLP--PLPE-DCILVDLTSV-KNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQV  232 (374)
T ss_pred             HHHHh--CCCC-CcEEEECCCc-cHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHH
Confidence            88872  1111 1122221332 2   244544444 368889987654322  2222222 334567788999999999


Q ss_pred             cCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHh
Q 023866          163 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDD  237 (276)
Q Consensus       163 ~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~  237 (276)
                      +|.. +++++++||..++++++.|++++.   +++....+.+.+.+...++..++|+.    +++++.   .+|.+|.+.
T Consensus       233 lG~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI  306 (374)
T PRK11199        233 WGARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADI  306 (374)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHH
Confidence            9965 899999999999999999887644   33333444788888777888888888    777764   689999999


Q ss_pred             cCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          238 VASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       238 v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      ..++.... +.++.+.+.  .+...+.    +.+.+.++++++
T Consensus       307 ~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~  348 (374)
T PRK11199        307 IMSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVEH  348 (374)
T ss_pred             HHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            98887766 888777664  4555554    556666666653

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.88  E-value=1.5e-20  Score=162.55  Aligned_cols=247  Identities=16%  Similarity=0.160  Sum_probs=166.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~   89 (276)
                      |||||||+|+||.+|+++|+++|+    +|++| +|+++ .+.+.+.|+..+.++.+++++||+||+|||+. ++++++.
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~   74 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF   74 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence            589999999999999999999999    99999 99875 56777788888888889899999999999976 6778774


Q ss_pred             HHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCccc--cccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866           90 TEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNTPS--AVGEAA-TVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        90 ~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~~~--~~~~g~-~~i~~~~~~~~~~~~~v~~l  159 (276)
                      ...  ..+..+++-++. .+++ +++   ++.+.+.  +..++.+ |-...  ....|. +.++.+   +++.+++++++
T Consensus        75 ~~~g~~~~~~~g~ivvd-~sT~-~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~  148 (292)
T PRK15059         75 GENGCTKASLKGKTIVD-MSSI-SPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPL  148 (292)
T ss_pred             CCcchhccCCCCCEEEE-CCCC-CHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHH
Confidence            310  001111111222 2555 543   3444432  3456654 43222  122444 334433   78999999999


Q ss_pred             hhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 023866          160 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK  235 (276)
Q Consensus       160 l~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~  235 (276)
                      |+.+|.. +++++...-..+.+.  .+.+++..+.++.|+   +.+.|+|.+...+++..+...+..+ ..  ..+ .+.
T Consensus       149 l~~~g~~~~~~G~~G~g~~~Kl~--~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~-~~--~~~-~~~  222 (292)
T PRK15059        149 FELLGKNITLVGGNGDGQTCKVA--NQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRIL-EV--HGE-RMI  222 (292)
T ss_pred             HHHHcCCcEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHH-Hh--hch-hhh
Confidence            9999964 889886544445443  234444456666666   4689999999999887655434333 32  223 344


Q ss_pred             HhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          236 DDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       236 ~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +.-++|+++.....+++       ++.|++..+.+++.+.|+.+.+.
T Consensus       223 ~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~  269 (292)
T PRK15059        223 KRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAAN  269 (292)
T ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            44457888877776654       45688888888888888887653

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.85  E-value=1.9e-19  Score=155.92  Aligned_cols=246  Identities=16%  Similarity=0.128  Sum_probs=166.3

Q ss_pred             EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHHHH---HH
Q 023866           15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAAV---IT   90 (276)
Q Consensus        15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~vl---~~   90 (276)
                      |||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||+ +++++++   .+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~   75 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG   75 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence            79999999999999999999    99999 9999999999988988888888999999999999997 5688887   44


Q ss_pred             HhhccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCc--cccccCcc-eEeecCCCCCHHHHHHHHHHhhh
Q 023866           91 EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNT--PSAVGEAA-TVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus        91 ~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~--~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      +.. .+.+++.++.. +++ +.+   .+.+.+.  +..++.+ |..  +.....|. +.++.+   +++.+++++++|+.
T Consensus        76 l~~-~~~~g~~vid~-st~-~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~  148 (288)
T TIGR01692        76 ILP-KVAKGSLLIDC-STI-DPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGP  148 (288)
T ss_pred             Hhh-cCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHH
Confidence            411 11111222222 555 543   3444433  3445543 321  11122343 334443   67889999999999


Q ss_pred             cCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH----HH
Q 023866          163 VGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QL  234 (276)
Q Consensus       163 ~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l  234 (276)
                      +|. .+++++......+.+..  +.+.+..+.++.|+   +.+.|+|.+...+++..+...+...... ...|.    .+
T Consensus       149 ~g~~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~  225 (288)
T TIGR01692       149 MGRNIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTY-NPVPGVMPQAP  225 (288)
T ss_pred             hcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHh-CCCcccccccc
Confidence            996 58888855555555542  33445555566665   4699999999999888665433323221 11111    22


Q ss_pred             HHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          235 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       235 ~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .+..++|++.+...++++       ++.+++..+.+++.+.|+++.+.
T Consensus       226 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  273 (288)
T TIGR01692       226 ASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDK  273 (288)
T ss_pred             ccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            334457888777776664       45688888889999999887653

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02712 arogenate dehydrogenase

Probab=99.84  E-value=2.2e-19  Score=170.27  Aligned_cols=244  Identities=11%  Similarity=0.061  Sum_probs=166.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav~~~~~~~v   87 (276)
                      ..+||||||+|+||.+++++|.+.|+    +|++| +|+.+. +...+.|+....+..+++. .+|+||+|||+..+.++
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            46899999999999999999999998    99999 998654 4455678776667777665 58999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCC--cccHHHHHHHcC-CCcEEEEecCcccccc-Ccc---e-----EeecCCCCCHHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSG--LQRWSRWVEWTG-HSRFIRVMPNTPSAVG-EAA---T-----VMSLGGTATEEDGEL  155 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g--~~~~~~l~~~l~-~~~vv~~~p~~~~~~~-~g~---~-----~i~~~~~~~~~~~~~  155 (276)
                      +.++....++++.-+++..++  . ..+.+.+.++ +.++++.||+.+...+ .|.   .     .++.++....+..+.
T Consensus       442 i~~l~~~~lk~g~ivvDv~SvK~~-~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~  520 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSVKEF-PRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS  520 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCccHH-HHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence            888721011111112222122  3 4567777776 4679999999877654 231   1     112222223445566


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHH
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ  233 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~~  233 (276)
                      +.++|+.+|.. ++++.++||..+|.+++.|+.++.       ...+.|++   ...+...+++....++.+ .+.+|..
T Consensus       521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~-------~L~~~~~~---~~~~~~~gfr~l~~Li~Ria~~~p~l  590 (667)
T PLN02712        521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGR-------LLEKLGLE---STPINTKGYETLLNLVENTAGDSFDL  590 (667)
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHH-------HHHHCCCc---ccccccHHHHHHHHHHHhhcCCCHHH
Confidence            77999999965 889999999999999988886542       23345554   134555566666544432 3468999


Q ss_pred             HHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 023866          234 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK  270 (276)
Q Consensus       234 l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~  270 (276)
                      |.+.+..+... .+.|+.++..  .++..|.+-++.+++
T Consensus       591 ~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~  628 (667)
T PLN02712        591 YYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLR  628 (667)
T ss_pred             HHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887666 6777777654  566666666665543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.84  E-value=1.2e-18  Score=151.15  Aligned_cols=246  Identities=17%  Similarity=0.151  Sum_probs=162.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH-
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI-   89 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~-   89 (276)
                      ||||||+|.||.+|+..|.+.|+    +|++| ||++++.+.+.+.|.....+..+++++||+||+|+|+. +++.++. 
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~   75 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG   75 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence            69999999999999999999999    99999 99999999998888877778888899999999999975 5666652 


Q ss_pred             --HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCcc--ccccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866           90 --TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNTP--SAVGEAA-TVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        90 --~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~~--~~~~~g~-~~i~~~~~~~~~~~~~v~~l  159 (276)
                        .+. ....++..++.. +++ ++   +.+.+.+.  +.+++. .|...  .....+. ..++.+   +++.++.++++
T Consensus        76 ~~~~~-~~~~~g~iivd~-st~-~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~l  148 (291)
T TIGR01505        76 ENGII-EGAKPGKTLVDM-SSI-SPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPL  148 (291)
T ss_pred             cchHh-hcCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHH
Confidence              221 011111222222 333 33   34555543  344554 24221  1112333 344443   68899999999


Q ss_pred             hhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 023866          160 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK  235 (276)
Q Consensus       160 l~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~  235 (276)
                      |+.+|.. +++++......+.+.  .+.+.+..++++.|+   +.+.|+|+++..+++..+..++..+..   ..+ .+.
T Consensus       149 l~~lg~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~---~~~-~~~  222 (291)
T TIGR01505       149 FEALGKNIVLVGGNGDGQTCKVA--NQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV---KGE-RVI  222 (291)
T ss_pred             HHHhcCCeEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh---hCh-hhh
Confidence            9999964 778774333333333  233444445556555   568999999999999877665544322   122 344


Q ss_pred             HhcCCCCchHHHHHHH-------HHhCChHHHHHHHHHHHHHHHhhc
Q 023866          236 DDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       236 ~~v~sp~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +.-++|++......++       .++.|+...+.++..+.|+++.+.
T Consensus       223 ~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~  269 (291)
T TIGR01505       223 DRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRAN  269 (291)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhc
Confidence            4444687776544443       456688888888888888887653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.83  E-value=4.4e-19  Score=156.66  Aligned_cols=232  Identities=11%  Similarity=0.077  Sum_probs=158.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ..+||+|||+ |.||+++++.|.+. ++    +|+++ |++.+           ...++.+.+.+||+||+|||+..+.+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~   66 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTAA   66 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHH
Confidence            4689999999 99999999999864 66    89999 88511           12355677899999999999999999


Q ss_pred             HHHHHhhccccccCCc---ccCC------CCcccHHHHHHHcC-CCcEEEEecCccccc-c--Ccc-eEeecCCCCCHHH
Q 023866           87 AVITEEAFGFCCCRSE---IERP------SGLQRWSRWVEWTG-HSRFIRVMPNTPSAV-G--EAA-TVMSLGGTATEED  152 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~---l~~~------~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~-~--~g~-~~i~~~~~~~~~~  152 (276)
                      +++++        .++   ++++      .++ ...-++..++ ..+++..||....+. +  ++. .++++.  ...+.
T Consensus        67 ~l~~l--------~~~~~~l~~~~iVtDVgSv-K~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~  135 (370)
T PRK08818         67 LIEEY--------VALAGGRAAGQLWLDVTSI-KQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHW  135 (370)
T ss_pred             HHHHH--------hhhhcCCCCCeEEEECCCC-cHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhH
Confidence            99998        332   3332      333 3333343333 357899999865432 1  233 344543  34455


Q ss_pred             HHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH-HH---HHHH
Q 023866          153 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVL-GA---ASMV  224 (276)
Q Consensus       153 ~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~---~~~a~~~~~~~~~-g~---~~~~  224 (276)
                      .+.++++++.+|.. +++++++||.++|.+++.||+.+..+..+..   .....   .+....+...+|+ ++   ++++
T Consensus       136 ~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIA  212 (370)
T PRK08818        136 SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARIL  212 (370)
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhh
Confidence            78899999999965 8899999999999998888876655444432   11110   1111246666676 33   4665


Q ss_pred             HhcCCChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHH---HHHHhh
Q 023866          225 TKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAA---AKRSRE  274 (276)
Q Consensus       225 ~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~---~~r~~~  274 (276)
                      .   .+|.+|.+...++. ...+.++.+.+.  .+...+.    +++.+.   ++++++
T Consensus       213 s---s~P~mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~  267 (370)
T PRK08818        213 S---LNPSIYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA  267 (370)
T ss_pred             c---CCHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            4   68999999999888 788888877664  4555554    445555   666655

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.83  E-value=2e-18  Score=150.23  Aligned_cols=199  Identities=14%  Similarity=0.112  Sum_probs=135.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcC---CCEEEEeeCcc-cHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~   86 (276)
                      |+|||||+|+||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++   +|+||+|+|++ ++++
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~   75 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES   75 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence            589999999999999999999999    99999 999999999988898888888888765   69999999988 8899


Q ss_pred             HHHHHhhccccccCCcccCCCCcc--cHHHHHHHcC--CCcEEEEe-cCccccccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQ--RWSRWVEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFG  161 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~--~~~~l~~~l~--~~~vv~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~  161 (276)
                      ++.++.. .++++.-++.. +++.  ...++.+.+.  +..++.+. ...+.....|.+.++.|   +++.+++++++|+
T Consensus        76 v~~~i~~-~l~~g~ivid~-st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~  150 (299)
T PRK12490         76 VIKDLYP-LLSPGDIVVDG-GNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFK  150 (299)
T ss_pred             HHHHHhc-cCCCCCEEEEC-CCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHH
Confidence            9887721 11111122222 3330  2233444332  33444321 11222223455545544   7899999999999


Q ss_pred             hcCc----eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH-HHHHHH
Q 023866          162 SVGK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAG--LPRELALGLASQ-TVLGAA  221 (276)
Q Consensus       162 ~~G~----~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~G--l~~~~a~~~~~~-~~~g~~  221 (276)
                      .+|.    .+++++-.-...+.+.  .+.+++..+.++.|+   +.+.|  +|.+.+.+++.. +...+.
T Consensus       151 ~~~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~  218 (299)
T PRK12490        151 ALAPEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSW  218 (299)
T ss_pred             HhcCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHH
Confidence            9995    4788874333333332  244556667777776   45788  999999999985 334433

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.82  E-value=1.8e-18  Score=157.90  Aligned_cols=194  Identities=13%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----Cce---eccCchhhhcC---CCEEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVV   76 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDvI~   76 (276)
                      ..++++|||||+|.||.+|+.+|+++|+    +|++| ||++++.+.+.+.    |..   .+.++.++++.   +|+||
T Consensus         3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi   77 (493)
T PLN02350          3 SAALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVI   77 (493)
T ss_pred             CCCCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEE
Confidence            3467899999999999999999999999    99999 9999999988763    543   56788888876   99999


Q ss_pred             EeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCC
Q 023866           77 FSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTA  148 (276)
Q Consensus        77 lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~  148 (276)
                      +||+.. ++++|+.++. ..+.++.-++.. +.+ +.   ..+.+.+.  +.+++.+ |-  .+.....|.++++.|   
T Consensus        78 ~~v~~~~aV~~Vi~gl~-~~l~~G~iiID~-sT~-~~~~t~~~~~~l~~~Gi~flda-pVSGG~~gA~~G~~im~GG---  150 (493)
T PLN02350         78 ILVKAGAPVDQTIKALS-EYMEPGDCIIDG-GNE-WYENTERRIKEAAEKGLLYLGM-GVSGGEEGARNGPSLMPGG---  150 (493)
T ss_pred             EECCCcHHHHHHHHHHH-hhcCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCeEEeC-CCcCCHHHhcCCCeEEecC---
Confidence            999865 6888887662 111111222222 333 22   23333332  3455543 22  222234566555544   


Q ss_pred             CHHHHHHHHHHhhhcCc-------eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHH
Q 023866          149 TEEDGELIGKLFGSVGK-------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VA-AGLPRELALGLAS  214 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~-------~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~~-~Gl~~~~a~~~~~  214 (276)
                      +++++++++++|+.+|.       ++++++.---.++.+.  .+.+.+..++++.|+.   .+ .|++.++..+++.
T Consensus       151 ~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv--~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~  225 (493)
T PLN02350        151 SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMV--HNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA  225 (493)
T ss_pred             CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            88999999999999992       4788875443444443  2445667788888874   45 5999999888743

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.82  E-value=6.4e-20  Score=145.64  Aligned_cols=151  Identities=23%  Similarity=0.348  Sum_probs=103.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~vl   88 (276)
                      |+||||||+|.||+.|+++|.++||    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|+ +++++++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~   75 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL   75 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence            6899999999999999999999999    99999 9999999999999999999999999999999999987 5789998


Q ss_pred             HH--HhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEE-ecCccccccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866           89 IT--EEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        89 ~~--~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l  159 (276)
                      .+  +. ..+.++.-++.. +.+ ++   .++.+.+.  +.+++.+ +...|.....|. +.+..+   +++.+++++++
T Consensus        76 ~~~~i~-~~l~~g~iiid~-sT~-~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~  149 (163)
T PF03446_consen   76 FGENIL-AGLRPGKIIIDM-STI-SPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPL  149 (163)
T ss_dssp             HCTTHG-GGS-TTEEEEE--SS---HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHH
T ss_pred             hhhHHh-hccccceEEEec-CCc-chhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHH
Confidence            87  51 011111112211 444 44   34444443  3445443 112222333454 455544   78999999999


Q ss_pred             hhhcCce-E-EcCC
Q 023866          160 FGSVGKI-W-RADE  171 (276)
Q Consensus       160 l~~~G~~-~-~~~e  171 (276)
                      |+.+|.. + +++|
T Consensus       150 l~~~~~~v~~~~G~  163 (163)
T PF03446_consen  150 LEAMGKNVYHYVGP  163 (163)
T ss_dssp             HHHHEEEEEEE-ES
T ss_pred             HHHHhCCceeeeCc
Confidence            9999975 5 3454

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02858 fructose-bisphosphate aldolase

Probab=99.82  E-value=2.2e-18  Score=174.16  Aligned_cols=247  Identities=11%  Similarity=0.068  Sum_probs=169.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      ..||||||+|.||..|+.+|+++||    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|+. ++++|+
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~   78 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVF   78 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence            4689999999999999999999999    99999 99999999999999999999999999999999999864 678887


Q ss_pred             HH---HhhccccccCCcccCCCCcccHH---HHHHHcC--C--CcEEEEecC--ccccccCcce-EeecCCCCCHHHHHH
Q 023866           89 IT---EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG--H--SRFIRVMPN--TPSAVGEAAT-VMSLGGTATEEDGEL  155 (276)
Q Consensus        89 ~~---~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~--~~vv~~~p~--~~~~~~~g~~-~i~~~~~~~~~~~~~  155 (276)
                      ..   +. .++.++.-++. .+.+ +++   ++.+.+.  +  ..++.+ |-  .+.....|.. +++.+   +++.+++
T Consensus        79 ~g~~g~~-~~l~~g~iivd-~STi-~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~~~A~~G~L~imvGG---~~~~~~~  151 (1378)
T PLN02858         79 FGDEGAA-KGLQKGAVILI-RSTI-LPLQLQKLEKKLTERKEQIFLVDA-YVSKGMSDLLNGKLMIIASG---RSDAITR  151 (1378)
T ss_pred             hchhhHH-hcCCCcCEEEE-CCCC-CHHHHHHHHHHHHhcCCceEEEEc-cCcCCHHHHhcCCeEEEEcC---CHHHHHH
Confidence            42   21 11111112222 2455 443   3433332  2  234443 21  2222234443 44544   7889999


Q ss_pred             HHHHhhhcCce-EE-cCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023866          156 IGKLFGSVGKI-WR-ADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKH  230 (276)
Q Consensus       156 v~~ll~~~G~~-~~-~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~  230 (276)
                      ++++|+.+|.. ++ .++..-...+.+.  .+.+++..+.++.|+   +.+.|++++..++++..+..++..+..   ..
T Consensus       152 ~~p~l~~~g~~i~~~~G~~G~g~~~KL~--nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~---~~  226 (1378)
T PLN02858        152 AQPFLSAMCQKLYTFEGEIGAGSKVKMV--NELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKN---HV  226 (1378)
T ss_pred             HHHHHHHhcCceEEecCCCCHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHh---hh
Confidence            99999999965 54 4663322233322  233444555667776   579999999999999888765554432   23


Q ss_pred             hHHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          231 PGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       231 ~~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      + .+.+.-++|+++...+.+++       ++.++.-.+.++..+.|+++.+
T Consensus       227 ~-~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~  276 (1378)
T PLN02858        227 P-LLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSS  276 (1378)
T ss_pred             h-HhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence            3 44455568888888887765       4568888888888888887765

>PLN02712 arogenate dehydrogenase

Probab=99.82  E-value=2.4e-18  Score=163.18  Aligned_cols=242  Identities=12%  Similarity=0.060  Sum_probs=159.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~vl   88 (276)
                      .++|||||+|+||.+++.+|.+.|+    +|++| +|+..+ +...+.|+....+..+++ .++|+||+|||++.+.+++
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl  125 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVL  125 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence            5899999999999999999999998    99999 998544 455567887777777755 5699999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCccc---HHHHHHHcC-CCcEEEEecCcccccc----Ccce-Eee----cCCCCCHHHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTG-HSRFIRVMPNTPSAVG----EAAT-VMS----LGGTATEEDGEL  155 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~-~~~vv~~~p~~~~~~~----~g~~-~i~----~~~~~~~~~~~~  155 (276)
                      .++....+++ ..++....++ .   .+.+.+.++ +..+++.||+...+..    .+.. +++    ..+....+..+.
T Consensus       126 ~~l~~~~l~~-g~iVvDv~Sv-K~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  203 (667)
T PLN02712        126 KSLPLQRLKR-NTLFVDVLSV-KEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS  203 (667)
T ss_pred             HhhhhhcCCC-CeEEEECCCC-cHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence            8872001111 1122221233 2   245666776 4679999998654321    1222 222    111122345667


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGL-PRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl-~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      +.++|+.+|.. +.++.++||.++|.+++.||+++..+..+.-......- ..+...+++       .+++.   .+|+.
T Consensus       204 l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~-------~Ria~---~~p~L  273 (667)
T PLN02712        204 FLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLV-------ENTCG---DSFDL  273 (667)
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHH-------HHHhc---CCHHH
Confidence            78999999965 88999999999999999999876654322210000100 122222332       44543   68999


Q ss_pred             HHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 023866          234 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK  270 (276)
Q Consensus       234 l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~  270 (276)
                      |.+.+..+. ...+.|+.+++.  .++..|..-++..++
T Consensus       274 ~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  311 (667)
T PLN02712        274 YYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVVR  311 (667)
T ss_pred             HHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877 777788887764  556666555555443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.81  E-value=3.4e-18  Score=149.74  Aligned_cols=190  Identities=17%  Similarity=0.161  Sum_probs=134.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC--------------ceeccCchhhh
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVV   69 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~   69 (276)
                      ..+||+|||+|.||.+|+..|.++|+    +|++| |+++++++.+.+     .+              +..+.+..+++
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh
Confidence            35789999999999999999999999    99999 999988776653     12              23455677778


Q ss_pred             cCCCEEEEeeCccc--HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecC
Q 023866           70 EYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLG  145 (276)
Q Consensus        70 ~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~  145 (276)
                      ++||+||+|||++.  ..+++.++.  ...++..++ +..+|+ +...+++.++ ..+++++||+.|...+.. ..++++
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~--~~~~~~~ii~s~tsg~-~~~~l~~~~~~~~~~ig~h~~~p~~~~~l-~~i~~g  153 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLD--GLCDPDTIFATNTSGL-PITAIAQAVTRPERFVGTHFFTPADVIPL-VEVVRG  153 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHH--HhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEccCCCCccCce-EEEeCC
Confidence            99999999999874  567777763  111112233 455888 8888988876 367999999999877663 445677


Q ss_pred             CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Q 023866          146 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQT  216 (276)
Q Consensus       146 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~  216 (276)
                      +.++++.++.+.++|+.+|.. ++++.+.. .+.     .+-+++   ..+.|+   ..+.|+++++..+++..+
T Consensus       154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~-G~i-----~nr~~~---~~~~Ea~~l~~~g~~~~~~id~~~~~~  219 (311)
T PRK06130        154 DKTSPQTVATTMALLRSIGKRPVLVKKDIP-GFI-----ANRIQH---ALAREAISLLEKGVASAEDIDEVVKWS  219 (311)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEcCCCC-CcH-----HHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence            778999999999999999976 66654321 110     011111   122222   345678998888877533

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.81  E-value=8.7e-18  Score=146.12  Aligned_cols=247  Identities=19%  Similarity=0.179  Sum_probs=157.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      +|||||||+|.||.+++..|.+.|+    +|++| ||++++.+.+.+.|+..+.+..+++++||+||+|+|+. .++.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~   76 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA   76 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence            3689999999999999999999998    99999 99999999888888887778888899999999999864 566665


Q ss_pred             H---HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC---ccccccCc-ceEeecCCCCCHHHHHHH
Q 023866           89 I---TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN---TPSAVGEA-ATVMSLGGTATEEDGELI  156 (276)
Q Consensus        89 ~---~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~---~~~~~~~g-~~~i~~~~~~~~~~~~~v  156 (276)
                      .   ++. ..+.++.-++.. +++ ++   +.+.+.+.  +.+++.. |.   .+.. ..| .+.++.+   +++.++.+
T Consensus        77 ~~~~~~~-~~~~~g~iiid~-st~-~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a-~~g~l~i~~gg---~~~~~~~~  148 (296)
T PRK11559         77 LGENGII-EGAKPGTVVIDM-SSI-APLASREIAAALKAKGIEMLDA-PVSGGEPKA-IDGTLSVMVGG---DKAIFDKY  148 (296)
T ss_pred             cCcchHh-hcCCCCcEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHH-hhCcEEEEECC---CHHHHHHH
Confidence            2   231 011111222222 334 33   34555543  2334332 21   1111 123 3444433   68899999


Q ss_pred             HHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 023866          157 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG  232 (276)
Q Consensus       157 ~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~  232 (276)
                      .++|+.+|.. +++++..-...+.+.  .+.+.+..+..+.|+   +.+.|++.++..+++..+..++..+..   ..+.
T Consensus       149 ~~~l~~~~~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~---~~~~  223 (296)
T PRK11559        149 YDLMKAMAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAPM  223 (296)
T ss_pred             HHHHHHhcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh---hchH
Confidence            9999999964 777753222222222  233333333344444   568999999998888766544433322   2344


Q ss_pred             HHHHhcCCCCchHHHHHH-------HHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          233 QLKDDVASPGGTTIAGIH-------ELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       233 ~l~~~v~sp~g~t~~~l~-------~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                       +.+..++|+++.....+       ..++.++...+.+++.+.|+++.+.
T Consensus       224 -~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  272 (296)
T PRK11559        224 -VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKAD  272 (296)
T ss_pred             -hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence             33344467776555444       3456688888888888888877653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.80  E-value=1.9e-17  Score=153.20  Aligned_cols=188  Identities=16%  Similarity=0.116  Sum_probs=135.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVV   69 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~   69 (276)
                      .+||||||+|.||.+||.+|+++|+    +|++| |+++++.+.+.+                   .| +..+++..+++
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV   78 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh
Confidence            3689999999999999999999999    99999 999988765431                   13 56677888889


Q ss_pred             cCCCEEEEeeCccc-HH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecC
Q 023866           70 EYSDVVVFSVKPQV-DK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLG  145 (276)
Q Consensus        70 ~~aDvI~lav~~~~-~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~  145 (276)
                      ++||+||.|+|++. ++ .++.++.. ...+ ..++ +..+|+ +.+.+++.+. ..+++..||+.|...+..+ .++++
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~-~~~~-~~iI~SsTsgi-~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv-evv~g  154 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDA-AARP-DALIGSSTSGF-LPSDLQEGMTHPERLFVAHPYNPVYLLPLV-ELVGG  154 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHh-hCCC-CcEEEEcCCCC-CHHHHHhhcCCcceEEEEecCCCcccCceE-EEcCC
Confidence            99999999999874 44 45555521 1111 2233 445888 7888888775 3578999999888766533 56778


Q ss_pred             CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHH-HHH---HHHcCCCHHHHHHHHHHH
Q 023866          146 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEAL-ADG---GVAAGLPRELALGLASQT  216 (276)
Q Consensus       146 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l-~~~---~~~~Gl~~~~a~~~~~~~  216 (276)
                      +.++++.++.+.++|+.+|+. ++++. +.+.+++         ..+..++ .|+   +.+.|++.++..+++..+
T Consensus       155 ~~t~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~---------nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g  220 (495)
T PRK07531        155 GKTSPETIRRAKEILREIGMKPVHIAK-EIDAFVG---------DRLLEALWREALWLVKDGIATTEEIDDVIRYS  220 (495)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEeecC-CCcchhH---------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence            788899999999999999987 66643 3333322         1223332 333   346778888888877755

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=2.8e-17  Score=141.97  Aligned_cols=155  Identities=18%  Similarity=0.159  Sum_probs=119.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~   63 (276)
                      |+++||+|||+|.||.+++..|.++|+    +|+++ |+++++++.           +.+.|             +..++
T Consensus         1 ~~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~   75 (282)
T PRK05808          1 MGIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT   75 (282)
T ss_pred             CCccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence            456789999999999999999999999    99999 999988742           33333             33344


Q ss_pred             CchhhhcCCCEEEEeeCcccH--HHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866           64 DNNAVVEYSDVVVFSVKPQVD--KAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~~~--~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~  140 (276)
                      +.. .+++||+||+|+|++..  .+++.++.. .++++..+.+..+|+ +++.+++.++ ..+++++||+.|..+..++.
T Consensus        76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~~-~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve  152 (282)
T PRK05808         76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSSL-SITELAAATKRPDKVIGMHFFNPVPVMKLVE  152 (282)
T ss_pred             CHH-HhccCCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCCC-CHHHHHHhhCCCcceEEeeccCCcccCccEE
Confidence            544 47899999999987643  578877731 111112222555888 8899998875 35899999999999888886


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                       ++.+++++++..+.+.++|+.+|+. +++++
T Consensus       153 -v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d  183 (282)
T PRK05808        153 -IIRGLATSDATHEAVEALAKKIGKTPVEVKN  183 (282)
T ss_pred             -EeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence             6778889999999999999999986 66654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.79  E-value=1.4e-17  Score=145.03  Aligned_cols=194  Identities=16%  Similarity=0.139  Sum_probs=132.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcC---CCEEEEeeCcc-cHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~   86 (276)
                      |||||||+|.||.+|+++|+++|+    +|++| ||++++.+.+.+.|+..+.++.++++.   +|+||+++|+. .+++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~   75 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA   75 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence            589999999999999999999999    99999 999999999988898888888888775   69999999987 7888


Q ss_pred             HHHHHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEEecCc--cccccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRVMPNT--PSAVGEAATVMSLGGTATEEDGELIGKLFG  161 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~  161 (276)
                      ++..+.. .+.++.-++...++.. ....+.+.+.  +..++. .|..  +.....|.+.+..+   +++.+++++++|+
T Consensus        76 v~~~l~~-~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~  150 (301)
T PRK09599         76 TIDELAP-LLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFK  150 (301)
T ss_pred             HHHHHHh-hCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHH
Confidence            8877621 1111122232212220 1223433332  344554 3332  22223455545543   7899999999999


Q ss_pred             hcCc----e-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHH
Q 023866          162 SVGK----I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA--AGLPRELALGLASQT  216 (276)
Q Consensus       162 ~~G~----~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~--~Gl~~~~a~~~~~~~  216 (276)
                      .+|.    . +++++..-...+.+.  .+.+++..+.++.|+   +.+  .|+|.+...+++..+
T Consensus       151 ~~~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~  213 (301)
T PRK09599        151 ALAPRAEDGYLHAGPVGAGHFVKMV--HNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG  213 (301)
T ss_pred             HHcccccCCeEeECCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence            9997    4 788874322222222  234555666677776   346  999999999998865

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.79  E-value=2.3e-18  Score=146.57  Aligned_cols=220  Identities=18%  Similarity=0.156  Sum_probs=156.1

Q ss_pred             HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcc
Q 023866           25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEI  103 (276)
Q Consensus        25 la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l  103 (276)
                      +|++|.++|+  ..+|+.| |++++..+...+.|+.-. .+..+.+.++|+||+|||+..+.+++.++        .+++
T Consensus         1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~--------~~~~   69 (258)
T PF02153_consen    1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEI--------APYL   69 (258)
T ss_dssp             HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHH--------HCGS
T ss_pred             ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHh--------hhhc
Confidence            5788899983  2288899 999999988878886422 22257789999999999999999999999        5555


Q ss_pred             cCC------CCccc---HHHHHHHcC-CCcEEEEecCccccc----------cCc-ceEeecCCCCCHHHHHHHHHHhhh
Q 023866          104 ERP------SGLQR---WSRWVEWTG-HSRFIRVMPNTPSAV----------GEA-ATVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus       104 ~~~------~g~~~---~~~l~~~l~-~~~vv~~~p~~~~~~----------~~g-~~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      ..+      +++ .   .+.+++.++ +.+++..||....+.          -+| ..++++....+++.++.++++++.
T Consensus        70 ~~~~iv~Dv~Sv-K~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~  148 (258)
T PF02153_consen   70 KPGAIVTDVGSV-KAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA  148 (258)
T ss_dssp             -TTSEEEE--S--CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCC-CHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence            443      333 2   356667777 678999999754411          123 345677766677899999999999


Q ss_pred             cCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCC
Q 023866          163 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP  241 (276)
Q Consensus       163 ~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp  241 (276)
                      +|.. ++++.++||.++|.+++.|++++.   +++....+.+.+.+....+..++|+.++++..   .+|..|.+...++
T Consensus       149 ~Ga~~~~~~~eeHD~~~A~vshlpH~~a~---al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N  222 (258)
T PF02153_consen  149 LGARVVEMDAEEHDRIMAYVSHLPHLLAS---ALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSN  222 (258)
T ss_dssp             CT-EEEE--HHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHT
T ss_pred             CCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHC
Confidence            9964 889999999999999999998765   33333333333456678889999999888765   6899999998888


Q ss_pred             CchHHHHHHHHHhC--ChHHHHH
Q 023866          242 GGTTIAGIHELEKS--GFRGILM  262 (276)
Q Consensus       242 ~g~t~~~l~~l~~~--~~~~~~~  262 (276)
                      .....+.++.+.+.  .++..+.
T Consensus       223 ~~~~~~~l~~~~~~L~~l~~~l~  245 (258)
T PF02153_consen  223 PENLLEALDEFIKELNELREALE  245 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888887664  4444444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.78  E-value=1.2e-16  Score=138.97  Aligned_cols=196  Identities=13%  Similarity=0.053  Sum_probs=129.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh---cCCCEEEEeeCcccHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDvI~lav~~~~~~~v   87 (276)
                      |||||||+|+||.+|+.+|.++|+    +|.+| ||++++.+.+.+.|+....+..+++   ..+|+||+|||+..++++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v   75 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV   75 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence            589999999999999999999999    99999 9999999999888776656655543   568999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEEecC-ccccccCcceEeecCCCCCHHHHHHHHHHhhhc
Q 023866           88 VITEEAFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV  163 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~  163 (276)
                      +.++.. .+.++..++...++. .....+.+.+.  +.+++.+... .+.....|.+.+..+   +++.++.++++|+.+
T Consensus        76 ~~~l~~-~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~  151 (298)
T TIGR00872        76 LEELAP-TLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADV  151 (298)
T ss_pred             HHHHHh-hCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHh
Confidence            988721 111112222222222 01222222222  3455554221 122223455544443   789999999999999


Q ss_pred             Cc----eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---HHc--CCCHHHHHHHHHHHH
Q 023866          164 GK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VAA--GLPRELALGLASQTV  217 (276)
Q Consensus       164 G~----~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~~~--Gl~~~~a~~~~~~~~  217 (276)
                      +.    .+++++..-.....+.  .+++.+..+.++.|+.   .+.  |+|.++..+++..+.
T Consensus       152 ~~~~~~~~~~G~~G~~~~~K~~--~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~  212 (298)
T TIGR00872       152 APEEQGYLYCGPCGSGHFVKMV--HNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS  212 (298)
T ss_pred             cCcCCCEEEECCccHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence            95    4777774333333322  2445566667777763   355  569999888877653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.78  E-value=4.2e-17  Score=164.96  Aligned_cols=248  Identities=15%  Similarity=0.115  Sum_probs=165.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl   88 (276)
                      .++|||||+|+||.+|+.+|+++|+    +|++| ||++++.+.+.+.|.....++.+++++||+||+||| |+++++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl  398 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVL  398 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHH
Confidence            4789999999999999999999999    99999 999999999988888777888899999999999999 67888887


Q ss_pred             HH---HhhccccccCCcccCCCCcccHH---HHHHHcC----CCcEEEEe-cCccccccCcc-eEeecCCCCCHHHHHHH
Q 023866           89 IT---EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG----HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELI  156 (276)
Q Consensus        89 ~~---~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~----~~~vv~~~-p~~~~~~~~g~-~~i~~~~~~~~~~~~~v  156 (276)
                      ..   +. .++.++..++.. +++ +++   ++.+.+.    +..++.+- ...|.....|. +.++.|   +++.++++
T Consensus       399 ~g~~g~~-~~l~~g~ivVd~-STv-sP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~  472 (1378)
T PLN02858        399 FGDLGAV-SALPAGASIVLS-STV-SPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSA  472 (1378)
T ss_pred             hchhhHH-hcCCCCCEEEEC-CCC-CHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHH
Confidence            43   21 011111222222 444 443   3444332    23344321 11222233443 445544   78899999


Q ss_pred             HHHhhhcCce-EEc-CCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866          157 GKLFGSVGKI-WRA-DEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP  231 (276)
Q Consensus       157 ~~ll~~~G~~-~~~-~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~  231 (276)
                      +++|+.+|.. +++ ++-.-...+.+.  .+.+.+..+.++.|+   +.+.|+|++..++++..+...+..+ ..  ..|
T Consensus       473 ~plL~~lg~~i~~~~g~~G~a~~~KL~--nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~  547 (1378)
T PLN02858        473 GSVLSALSEKLYVIKGGCGAGSGVKMV--NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP  547 (1378)
T ss_pred             HHHHHHHhCcEEEeCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc
Confidence            9999999965 554 433222233332  233444456666665   4689999999999998876554433 21  234


Q ss_pred             HHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          232 GQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       232 ~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      ..+ +.-++|+++.....+++       ++.|+.-.+.++..+.|+++.+
T Consensus       548 ~~l-~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~  596 (1378)
T PLN02858        548 HML-DNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSA  596 (1378)
T ss_pred             hhh-cCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence            444 44457888877776654       4557887888888888877654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.77  E-value=6.5e-19  Score=155.34  Aligned_cols=193  Identities=16%  Similarity=0.126  Sum_probs=132.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------C------ceeccCchhhhcCCCE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDv   74 (276)
                      ++|||+|||+|.||++|+..|.++|+    +|++| +|++++.+.+.+.        |      +..+.++.++++++|+
T Consensus         3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~   77 (328)
T PRK14618          3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF   77 (328)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence            56899999999999999999999999    99999 9999988877753        3      3345677788899999


Q ss_pred             EEEeeCcccHHHHHHHHhhccccccCCcccCCCCccc-----HHHHHHHcCC---C-cEEEEecCccccccCcce--Eee
Q 023866           75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQR-----WSRWVEWTGH---S-RFIRVMPNTPSAVGEAAT--VMS  143 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~-----~~~l~~~l~~---~-~vv~~~p~~~~~~~~g~~--~i~  143 (276)
                      ||+|||+++++++++.+.     +...+++..+|+ .     ...+.+.++.   . ..+...|+.+..++.+..  .+.
T Consensus        78 Vi~~v~~~~~~~v~~~l~-----~~~~vi~~~~Gi-~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~  151 (328)
T PRK14618         78 AVVAVPSKALRETLAGLP-----RALGYVSCAKGL-APDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVV  151 (328)
T ss_pred             EEEECchHHHHHHHHhcC-----cCCEEEEEeecc-ccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEE
Confidence            999999999999987762     112344444665 3     3455555432   2 235667888887765542  222


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCceEEcCCCCchhhh--------hh-cCch-------HHHHHHHHHHHHHH---HHHcCC
Q 023866          144 LGGTATEEDGELIGKLFGSVGKIWRADEKLFDAIT--------GL-SGSG-------PAYIFLAIEALADG---GVAAGL  204 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~--------a~-~g~~-------p~~~~~~~~~l~~~---~~~~Gl  204 (276)
                      .+  .+++..+.++++|+..|..++.+++..-...        ++ .|.+       +...+.+..++.|.   +.+.|+
T Consensus       152 ~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~  229 (328)
T PRK14618        152 AS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGA  229 (328)
T ss_pred             Ee--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            22  4788899999999999977665544322111        11 1211       11233445555554   568999


Q ss_pred             CHHHHHHHHH
Q 023866          205 PRELALGLAS  214 (276)
Q Consensus       205 ~~~~a~~~~~  214 (276)
                      ++++++++..
T Consensus       230 ~~~~~~~~~~  239 (328)
T PRK14618        230 EEATFYGLSG  239 (328)
T ss_pred             CccchhcCcc
Confidence            9999988754

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.76  E-value=3.7e-16  Score=142.66  Aligned_cols=192  Identities=11%  Similarity=0.104  Sum_probs=127.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----C--ceeccCchhhhc---CCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDvI~lav~   80 (276)
                      +.+|||||+|+||++||.+|.++||    +|++| ||++++.+.+.+.    |  +..+.++.++++   ++|+||++|+
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~   75 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIK   75 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeC
Confidence            3589999999999999999999999    99999 9999999888763    5  345678888876   4899999986


Q ss_pred             cc-cHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHH
Q 023866           81 PQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDG  153 (276)
Q Consensus        81 ~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~  153 (276)
                      |. .+++++.++. ..+.++..++...++. ..  ....+.+.  +.+++.+ |-  .+.....|.+.++.|   +++++
T Consensus        76 ~~~~v~~vi~~l~-~~L~~g~iIID~gn~~-~~dt~~r~~~l~~~Gi~flda-pVSGG~~gA~~G~~lm~GG---~~~a~  149 (470)
T PTZ00142         76 AGEAVDETIDNLL-PLLEKGDIIIDGGNEW-YLNTERRIKRCEEKGILYLGM-GVSGGEEGARYGPSLMPGG---NKEAY  149 (470)
T ss_pred             ChHHHHHHHHHHH-hhCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEcC-CCCCCHHHHhcCCEEEEeC---CHHHH
Confidence            55 7889998872 1111111122222333 22  22222221  3445543 21  122223466655554   78999


Q ss_pred             HHHHHHhhhcC-c------eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q 023866          154 ELIGKLFGSVG-K------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLAS  214 (276)
Q Consensus       154 ~~v~~ll~~~G-~------~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~-~~Gl~~~~a~~~~~  214 (276)
                      ++++++|+.++ +      +.++++.---.+..+..  +.+.+..++++.|+.   . +.|++.++..+++.
T Consensus       150 ~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~  219 (470)
T PTZ00142        150 DHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN  219 (470)
T ss_pred             HHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence            99999999999 4      36788753333333331  334566777787773   3 58999998888773

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.75  E-value=3.7e-16  Score=136.52  Aligned_cols=216  Identities=15%  Similarity=0.075  Sum_probs=144.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCch
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN   66 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~   66 (276)
                      ++|+|||+|.||.+|+..|.++|+    +|++| ||++++.+..           .+.|             +..+.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~   77 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA   77 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence            689999999999999999999999    99999 9999876653           2334             25666777


Q ss_pred             hhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEe
Q 023866           67 AVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVM  142 (276)
Q Consensus        67 ~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i  142 (276)
                      +++++||+||.|+|.+  ....++.++..  ..++..++ +..++. ....+++.+.+ .+++..||..|..... ...+
T Consensus        78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~--~~~~~~ii~ssts~~-~~~~la~~~~~~~~~~~~hp~~p~~~~~-lvei  153 (308)
T PRK06129         78 DAVADADYVQESAPENLELKRALFAELDA--LAPPHAILASSTSAL-LASAFTEHLAGRERCLVAHPINPPYLIP-VVEV  153 (308)
T ss_pred             HhhCCCCEEEECCcCCHHHHHHHHHHHHH--hCCCcceEEEeCCCC-CHHHHHHhcCCcccEEEEecCCCcccCc-eEEE
Confidence            8889999999999875  34455555521  11112223 223555 66778887753 4677888877654332 3446


Q ss_pred             ecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH
Q 023866          143 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVL  218 (276)
Q Consensus       143 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~  218 (276)
                      +++..++++.++.+.++++.+|+. ++++++....+.      +-+   +...+.|+   +.+.|+++++..+++..++.
T Consensus       154 v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~------nrl---~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g  224 (308)
T PRK06129        154 VPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVL------NRL---QGALLREAFRLVADGVASVDDIDAVIRDGLG  224 (308)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHH------HHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence            777778999999999999999975 778654332211      111   12233343   35677999999888876554


Q ss_pred             HHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 023866          219 GAASMVTKSGKHPGQLKDDVASPGGTTIAGIH  250 (276)
Q Consensus       219 g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~  250 (276)
                      .+..+     ..|.++.+.+ +|+|......+
T Consensus       225 ~~~~~-----~gp~~~~d~~-~~~g~~~~~~k  250 (308)
T PRK06129        225 LRWSF-----MGPFETIDLN-APGGVADYAQR  250 (308)
T ss_pred             CCccC-----cCHHHHHhcc-ccccHHHHHHH
Confidence            33222     2577777764 67776544433

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.74  E-value=3.6e-16  Score=137.47  Aligned_cols=206  Identities=19%  Similarity=0.131  Sum_probs=137.0

Q ss_pred             CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceeccCc
Q 023866           11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN   65 (276)
Q Consensus        11 ~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~~   65 (276)
                      |||.+.|+||-                    |.+||..|.++||    +|++| ||+++     +.+.+.+.|+.++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~   75 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD   75 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence            68899999873                    8899999999999    99999 99987     4555666898888888


Q ss_pred             hhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccH----HHHHHHcCC-CcEEEEecCccccc----
Q 023866           66 NAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRW----SRWVEWTGH-SRFIRVMPNTPSAV----  135 (276)
Q Consensus        66 ~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~----~~l~~~l~~-~~vv~~~p~~~~~~----  135 (276)
                      .+++++||+||+|+|++. +++++.++.. .+.++..+++ .+++ +.    +.+++.++. .+.+++++++|..+    
T Consensus        76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~-~L~~g~IVId-~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae  152 (342)
T PRK12557         76 AEAAKHGEIHILFTPFGKKTVEIAKNILP-HLPENAVICN-TCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP  152 (342)
T ss_pred             HHHHhCCCEEEEECCCcHHHHHHHHHHHh-hCCCCCEEEE-ecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccc
Confidence            888999999999999887 8899887721 1111111222 2333 33    345555542 23456666655543    


Q ss_pred             cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHH-HHHHHHHHHHHH---HHHcCCC
Q 023866          136 GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADG---GVAAGLP  205 (276)
Q Consensus       136 ~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~-~~~~~~~~l~~~---~~~~Gl~  205 (276)
                      ..+.++++.+     ...+++.+++++++|+++|.. ++.+++..+.    ....++ +.+....++.++   +.+.|.+
T Consensus       153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~----vk~~~n~l~av~~a~~aE~~~l~~~~~~~  228 (342)
T PRK12557        153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA----VADMGSLVTAVALSGVLDYYSVGTKIIKA  228 (342)
T ss_pred             cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2334455422     234788999999999999975 6777643333    111122 222233334433   2355555


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcC
Q 023866          206 -RELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       206 -~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                       .+.+.+++.+++.|+++++.+++
T Consensus       229 p~~~~~~~~~~~~~~~a~l~~~~~  252 (342)
T PRK12557        229 PKEMIEKQILMTLQTMASLVETSG  252 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Confidence             56788899999999999998765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.74  E-value=3.8e-16  Score=135.78  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=115.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC------------ceeccC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSD   64 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g------------~~~~~~   64 (276)
                      ++.+||+|||+|.||.+||..|+++|+    +|++| |+++++++.           +.+.|            .....+
T Consensus         2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   76 (295)
T PLN02545          2 AEIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT   76 (295)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence            345789999999999999999999999    99999 999988653           22222            122334


Q ss_pred             chhhhcCCCEEEEeeC--cccHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVK--PQVDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~--~~~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~  140 (276)
                      ..+.+++||+||+||+  ++....++.++.. ...+ ..++ +..+++ ++.++++.+.. .+++++|+..|...+.. +
T Consensus        77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~-~~~~-~~il~s~tS~i-~~~~l~~~~~~~~r~~g~h~~~pp~~~~l-v  152 (295)
T PLN02545         77 NLEELRDADFIIEAIVESEDLKKKLFSELDR-ICKP-SAILASNTSSI-SITRLASATQRPQQVIGMHFMNPPPIMKL-V  152 (295)
T ss_pred             CHHHhCCCCEEEEcCccCHHHHHHHHHHHHh-hCCC-CcEEEECCCCC-CHHHHHhhcCCCcceEEEeccCCcccCce-E
Confidence            4567899999999998  6666677776631 1111 2234 455888 89999988763 68899988877766544 4


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      .++.++.++++.++.+.++|+.+|+. +++.+
T Consensus       153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d  184 (295)
T PLN02545        153 EIIRGADTSDEVFDATKALAERFGKTVVCSQD  184 (295)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence            46677788999999999999999986 55554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.73  E-value=4.4e-16  Score=137.12  Aligned_cols=195  Identities=18%  Similarity=0.158  Sum_probs=127.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI   75 (276)
                      ||||+|||+|.||++|+..|.++|+    +|++| +|++++.+.+.+.              ++....+..++++++|+|
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   75 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI   75 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence            4799999999999999999999999    99999 9999998888764              344556667788899999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-------HHHHHHcCC--CcEEEEecCccccccCcc--eEeec
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-------SRWVEWTGH--SRFIRVMPNTPSAVGEAA--TVMSL  144 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-------~~l~~~l~~--~~vv~~~p~~~~~~~~g~--~~i~~  144 (276)
                      |+|||++++++++.++.. .+.++..+++..+|+ +.       +.+++.++.  ...+...|+.+...+.+.  ..+..
T Consensus        76 i~~v~~~~~~~v~~~l~~-~~~~~~~vi~~~ngv-~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~  153 (325)
T PRK00094         76 LVAVPSQALREVLKQLKP-LLPPDAPIVWATKGI-EPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIA  153 (325)
T ss_pred             EEeCCHHHHHHHHHHHHh-hcCCCCEEEEEeecc-cCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEE
Confidence            999999999999988731 111112223332566 32       445555553  234455677765544442  22222


Q ss_pred             CCCCCHHHHHHHHHHhhhcCceEEcCCCCch---------hhhhhcCc-------hHHHHHHHHHHHHHH---HHHcCCC
Q 023866          145 GGTATEEDGELIGKLFGSVGKIWRADEKLFD---------AITGLSGS-------GPAYIFLAIEALADG---GVAAGLP  205 (276)
Q Consensus       145 ~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~---------~~~a~~g~-------~p~~~~~~~~~l~~~---~~~~Gl~  205 (276)
                      +  .+++.++.+.++|+..|..+...++...         .+...+|.       .+.....+..++.|.   +.+.|++
T Consensus       154 ~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d  231 (325)
T PRK00094        154 S--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGAN  231 (325)
T ss_pred             e--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2  3688899999999999965444333211         00000111       122334445555554   5689999


Q ss_pred             HHHHHHHH
Q 023866          206 RELALGLA  213 (276)
Q Consensus       206 ~~~a~~~~  213 (276)
                      ++...++.
T Consensus       232 ~~~~~~~~  239 (325)
T PRK00094        232 PETFLGLA  239 (325)
T ss_pred             hhhhhccc
Confidence            99887754

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.73  E-value=9.4e-17  Score=133.56  Aligned_cols=151  Identities=20%  Similarity=0.263  Sum_probs=111.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------Cc--e-eccCchhhhcCCCEEEEe
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--K-VLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g~--~-~~~~~~~~~~~aDvI~la   78 (276)
                      |||+||| +|+||++|+..|.++|+    +|+++ +|++++.+.+.+.        |+  . ...+..++++++|+||+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence            6899997 89999999999999998    99999 9999988776541        22  1 123566778999999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCCCCcccH-----------------HHHHHHcCC-CcEEEEecCccccccCc--
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-----------------SRWVEWTGH-SRFIRVMPNTPSAVGEA--  138 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-----------------~~l~~~l~~-~~vv~~~p~~~~~~~~g--  138 (276)
                      ||++.+.+++.++.. -+. ++.+++..+|+ +.                 +.+++++|. .++++++||.+.....+  
T Consensus        76 vp~~~~~~~l~~l~~-~l~-~~vvI~~~ngi-~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~  152 (219)
T TIGR01915        76 VPWDHVLKTLESLRD-ELS-GKLVISPVVPL-ASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVD  152 (219)
T ss_pred             CCHHHHHHHHHHHHH-hcc-CCEEEEeccCc-eecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCC
Confidence            999999999887731 011 12233433555 33                 668888986 89999999988764322  


Q ss_pred             ----ceEeecCCCCCHHHHHHHHHHhhhc-Cce-EEcCC
Q 023866          139 ----ATVMSLGGTATEEDGELIGKLFGSV-GKI-WRADE  171 (276)
Q Consensus       139 ----~~~i~~~~~~~~~~~~~v~~ll~~~-G~~-~~~~e  171 (276)
                          ...+++++  ++++.+.+..+.+.+ |.. +..+.
T Consensus       153 ~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       153 DEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             CCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence                33445554  677899999999999 865 65654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.72  E-value=1.9e-15  Score=138.05  Aligned_cols=190  Identities=13%  Similarity=0.071  Sum_probs=125.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhhh---cCCCEEEEeeCc-c
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q   82 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDvI~lav~~-~   82 (276)
                      +|||||+|+||.+|+++|+++|+    +|++| ||++++.+.+.+.     ++..+.+..+++   +++|+||++||+ +
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~   75 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA   75 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence            48999999999999999999999    99999 9999999998864     255566777766   468999999998 5


Q ss_pred             cHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecC-ccccccCcceEeecCCCCCHHHHHHHH
Q 023866           83 VDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIG  157 (276)
Q Consensus        83 ~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~  157 (276)
                      .+.+++.++.. .+.++..++...++. ..  ....+.+.  +.+++.+... .+.....|.++++.   .+++.++.++
T Consensus        76 ~v~~Vi~~l~~-~L~~g~iIID~gns~-~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~G---G~~~a~~~~~  150 (467)
T TIGR00873        76 PVDAVINQLLP-LLEKGDIIIDGGNSH-YPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPG---GSAEAWPLVA  150 (467)
T ss_pred             HHHHHHHHHHh-hCCCCCEEEECCCcC-HHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCC---CCHHHHHHHH
Confidence            78899888721 111111122221222 12  12222222  3445543211 11222345554543   3789999999


Q ss_pred             HHhhhcCce-------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH----HcCCCHHHHHHHH
Q 023866          158 KLFGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADGGV----AAGLPRELALGLA  213 (276)
Q Consensus       158 ~ll~~~G~~-------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~----~~Gl~~~~a~~~~  213 (276)
                      ++|+.++..       .++++.---.+..+.  .+.+.+..++++.|+..    +.|++.++..+++
T Consensus       151 p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmv--hN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~  215 (467)
T TIGR00873       151 PIFQKIAAKVDGEPCCTWIGPDGAGHYVKMV--HNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF  215 (467)
T ss_pred             HHHHHHhhhcCCCCceEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999999842       578875433333333  23455667778888742    5999999888887

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.71  E-value=2.8e-15  Score=130.01  Aligned_cols=154  Identities=18%  Similarity=0.204  Sum_probs=116.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV   61 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g-------------~~~   61 (276)
                      +..||+|||+|.||.+|+..|.++|+    +|++| |+++++++...+              .|             +..
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~   76 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT   76 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence            45789999999999999999999999    99999 999988764321              12             123


Q ss_pred             ccCchhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCc
Q 023866           62 LSDNNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEA  138 (276)
Q Consensus        62 ~~~~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g  138 (276)
                      .++. +.+++||+||+|+|++.  ..+++.++.. -..++..+++..+|+ ++.++++.+. ..+++++|++.|..+..+
T Consensus        77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~-~~~~~~il~S~tsg~-~~~~la~~~~~~~r~ig~hf~~P~~~~~~  153 (291)
T PRK06035         77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELER-NVSPETIIASNTSGI-MIAEIATALERKDRFIGMHWFNPAPVMKL  153 (291)
T ss_pred             eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCcc
Confidence            3333 56789999999998774  5677776631 111112233445888 8899988875 368999999998887777


Q ss_pred             ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          139 ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       139 ~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      +.+ ..++.++++.++.+.++++.+|+. +++.+
T Consensus       154 vEv-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d  186 (291)
T PRK06035        154 IEV-VRAALTSEETFNTTVELSKKIGKIPIEVAD  186 (291)
T ss_pred             EEE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence            664 478888999999999999999986 66654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.69  E-value=6.2e-15  Score=127.61  Aligned_cols=157  Identities=13%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------------cCceecc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------------~g~~~~~   63 (276)
                      +.+||+|||+|.||.+||..|.++|+    +|++| |+++++++.+.+                         .++..++
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   76 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT   76 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence            45799999999999999999999999    99999 999887655432                         1334566


Q ss_pred             CchhhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +..+++++||+||.|+|.+  ...+++.++..  ..+...++ +..+++ ++..+.+.++ ..+++.+||..|..... .
T Consensus        77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~--~~~~~~ii~sntSt~-~~~~~~~~~~~~~r~vg~Hf~~p~~~~~-l  152 (287)
T PRK08293         77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAK--VAPEKTIFATNSSTL-LPSQFAEATGRPEKFLALHFANEIWKNN-T  152 (287)
T ss_pred             CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHh--hCCCCCEEEECcccC-CHHHHHhhcCCcccEEEEcCCCCCCcCC-e
Confidence            7777889999999999855  45677777631  11112233 344666 7778877765 35789999877765433 3


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCc
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLF  174 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~  174 (276)
                      .-++.++.++++.++.+.++++.+|+. +.+..+.+
T Consensus       153 vevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~p  188 (287)
T PRK08293        153 AEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQP  188 (287)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            345667788999999999999999976 67765443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.69  E-value=4.1e-15  Score=129.09  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~   63 (276)
                      |..+||+|||+|.||.+|+..|.++|+    +|++| |+++++++.+.+           .|             +...+
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   76 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT   76 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence            556899999999999999999999999    99999 999988765431           13             34445


Q ss_pred             CchhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~  140 (276)
                      +. +.+++||+||+|+|.+ + ...++.++.. .+.++..+++..+++ ++..+++.+. ..+++++|+..|.....++ 
T Consensus        77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~-~~s~la~~~~~~~r~~g~h~~~p~~~~~~v-  152 (292)
T PRK07530         77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCP-VLKPEAILATNTSSI-SITRLASATDRPERFIGIHFMNPVPVMKLV-  152 (292)
T ss_pred             CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCC-CHHHHHhhcCCcccEEEeeccCCcccCceE-
Confidence            55 4578999999999864 3 4466666631 111112233455778 7788888764 3577787777666655555 


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      -+..+..++++.++.+.++|+.+|+. +++.+
T Consensus       153 ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d  184 (292)
T PRK07530        153 ELIRGIATDEATFEAAKEFVTKLGKTITVAED  184 (292)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            35667788999999999999999976 66654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.69  E-value=7e-15  Score=128.28  Aligned_cols=245  Identities=17%  Similarity=0.196  Sum_probs=146.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----------ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|.||+.++..|.++|+    +|+++ +|++++.+.+.+.|..+           ..+..++ +++|+||++|
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence            689999999999999999999998    99999 99888888887766532           2334443 8899999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEE---------EecCccccccCcceEeecCCCCCH
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGTATE  150 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~---------~~p~~~~~~~~g~~~i~~~~~~~~  150 (276)
                      |++++.+++..+.. .+.++..++.-.+|+...+.+.+.++...++.         ..|+.....+.|...+...+. +.
T Consensus        75 k~~~~~~~~~~l~~-~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~  152 (304)
T PRK06522         75 KAYQLPAALPSLAP-LLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ES  152 (304)
T ss_pred             ccccHHHHHHHHhh-hcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-Cc
Confidence            99999999998821 01111122333378834677888776444442         234444444555444432222 23


Q ss_pred             HHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH-------HHH---HHHHHHHHHHcCCCH-
Q 023866          151 EDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI-------FLA---IEALADGGVAAGLPR-  206 (276)
Q Consensus       151 ~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~-------~~~---~~~l~~~~~~~Gl~~-  206 (276)
                      +..+.+.++|+..|..+...++             .++.++++.++.+..+       ..+   +.-....+.+.|++. 
T Consensus       153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~  232 (304)
T PRK06522        153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS  232 (304)
T ss_pred             HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4567788889888866555554             4566788877755422       112   222223345777653 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHH
Q 023866          207 -ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAK  270 (276)
Q Consensus       207 -~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~  270 (276)
                       +...+.+.....    ..  ....+.++.|.. ..+-+-+..     ++.-++.|+.....+.+.+.++
T Consensus       233 ~~~~~~~~~~~~~----~~--~~~~sSm~~D~~-~gr~tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~  295 (304)
T PRK06522        233 VEEVREYVRQVIQ----KT--AANTSSMLQDLE-AGRPTEIDAIVGYVLRRGRKHGIPTPLNDALYGLLK  295 (304)
T ss_pred             hHHHHHHHHHHhh----cc--CCCCchHHHHHH-cCCCcccchhccHHHHHHHHcCCCCcHHHHHHHHHH
Confidence             444333332211    11  112344555443 222222222     3444566887777777666554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.68  E-value=9.3e-15  Score=126.60  Aligned_cols=152  Identities=20%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c-----------------CceeccCch
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN   66 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~   66 (276)
                      +||+|||+|.||.+||..|.++|+    +|++| |+++++++.+.+       .                 +++.+.+..
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   76 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK   76 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence            589999999999999999999999    99999 999998876542       1                 234556777


Q ss_pred             hhhcCCCEEEEeeCccc-H-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEe
Q 023866           67 AVVEYSDVVVFSVKPQV-D-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVM  142 (276)
Q Consensus        67 ~~~~~aDvI~lav~~~~-~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i  142 (276)
                      +++++||+||+|+|.+. + ..++.++.+ ...+ ..++ +..+++ ++..+.+.+.. .+++..|+-.|...+. ...+
T Consensus        77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~-~~~~-~~il~~~tSt~-~~~~l~~~~~~~~r~~g~h~~~Pv~~~~-Lve~  152 (288)
T PRK09260         77 AAVADADLVIEAVPEKLELKKAVFETADA-HAPA-ECYIATNTSTM-SPTEIASFTKRPERVIAMHFFNPVHKMK-LVEL  152 (288)
T ss_pred             HhhcCCCEEEEeccCCHHHHHHHHHHHHh-hCCC-CcEEEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCc-eEEE
Confidence            88999999999998663 3 355555521 1111 1223 444777 88888887763 4577778777775443 4456


Q ss_pred             ecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          143 SLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       143 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      +.++.++++.++.+.++++.+|+. +++++
T Consensus       153 v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d  182 (288)
T PRK09260        153 IRGLETSDETVQVAKEVAEQMGKETVVVNE  182 (288)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            777888999999999999999975 77765

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.68  E-value=1.9e-16  Score=114.51  Aligned_cols=79  Identities=28%  Similarity=0.504  Sum_probs=67.4

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceecc-CchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      ||||||+|+||.+|+++|.++|+ .+.+|+++++|++++.+++.+ .++.... ++.++++++|+||+||||+++.+++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            79999999999999999999995 556999444999999999876 6776655 78999999999999999999999998


Q ss_pred             HH
Q 023866           90 TE   91 (276)
Q Consensus        90 ~~   91 (276)
                      ++
T Consensus        80 ~i   81 (96)
T PF03807_consen   80 EI   81 (96)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.66  E-value=2.9e-14  Score=124.22  Aligned_cols=187  Identities=15%  Similarity=0.108  Sum_probs=129.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c---------CceeccCchh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------GVKVLSDNNA   67 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~   67 (276)
                      ++.+||+|||+|.||..||..++.+|+    +|++| |++++..+.+.+           .         .+...++..+
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~   79 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA   79 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence            456799999999999999999999999    99999 999886654321           1         1245567778


Q ss_pred             hhcCCCEEEEeeCcc-cHH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEee
Q 023866           68 VVEYSDVVVFSVKPQ-VDK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMS  143 (276)
Q Consensus        68 ~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~  143 (276)
                      ++++||+|+.|+|-. +++ +++.++.+  ..+...++ +..+++ ++..+++.+.+ .+++.+||-.|...-.-+. ++
T Consensus        80 av~~aDlViEavpE~l~vK~~lf~~l~~--~~~~~aIlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLVE-Vv  155 (321)
T PRK07066         80 CVADADFIQESAPEREALKLELHERISR--AAKPDAIIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLVE-VL  155 (321)
T ss_pred             HhcCCCEEEECCcCCHHHHHHHHHHHHH--hCCCCeEEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceEE-Ee
Confidence            889999999999854 454 55555521  11112233 344777 88888887763 6899999877776544344 45


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHH-HHHHHHHH---HHHcC-CCHHHHHHHHH
Q 023866          144 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFL-AIEALADG---GVAAG-LPRELALGLAS  214 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~-~~~~l~~~---~~~~G-l~~~~a~~~~~  214 (276)
                      .++.++++..+.+..+++.+|+. +++..+           .|.|+.+ +..++...   ....| .+.++..+++.
T Consensus       156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd-----------~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~  221 (321)
T PRK07066        156 GGERTAPEAVDAAMGIYRALGMRPLHVRKE-----------VPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR  221 (321)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEeEecCCC-----------CccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67889999999999999999975 666422           2555432 22233222   23566 46777766644

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.62  E-value=7e-16  Score=116.11  Aligned_cols=125  Identities=16%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEee
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |.+++.-...+||+|||+|++|..|+..|.++||    +|..+++|++++.+++.. .+.....+..++++++|+||++|
T Consensus         1 ~~~~~~~~~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav   76 (127)
T PF10727_consen    1 MNTPATQAARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV   76 (127)
T ss_dssp             -----------EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S
T ss_pred             CCccccCCCccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEe
Confidence            6666666678999999999999999999999999    887655999988888876 34444456778899999999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEec
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMP  129 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p  129 (276)
                      |++.+.++.+++...+......++-+.+|..+.+.|+..-. ++.+..+||
T Consensus        77 pDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   77 PDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             -CCHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             chHHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            99999999999943211111223333356535555554332 455666665

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=99.62  E-value=1.3e-14  Score=117.68  Aligned_cols=183  Identities=12%  Similarity=0.169  Sum_probs=131.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||+|||. |.||+.++..|.++|+    +|+                           +.+||+||+|+|+..+.+++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~   49 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE   49 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence            69999998 9999999999999998    664                           258999999999999999999


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCcccccc-C---cceEeecCCCCCHHHHHHHHHHhhhcCc
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVG-E---AATVMSLGGTATEEDGELIGKLFGSVGK  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~-~---g~~~i~~~~~~~~~~~~~v~~ll~~~G~  165 (276)
                      ++        .+.+..-.++ .. .+.+.  ..+++..||....... .   ...+++ .+..+++..+.++++|+  |.
T Consensus        50 ~~--------~~~v~Dv~Sv-K~-~i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~  114 (197)
T PRK06444         50 SY--------DNNFVEISSV-KW-PFKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GY  114 (197)
T ss_pred             Hh--------CCeEEecccc-CH-HHHHh--cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CC
Confidence            88        5555543444 33 34443  2478999987542221 1   122333 45567777889999998  74


Q ss_pred             -eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCc
Q 023866          166 -IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGG  243 (276)
Q Consensus       166 -~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~sp~g  243 (276)
                       .+++++++||..+|.+++.|+.++.   ++.+    ..      ..+..++|+...+++.+. +.+|+.|.+.+..+..
T Consensus       115 ~~~~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~  181 (197)
T PRK06444        115 HFVEMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPY  181 (197)
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCch
Confidence             4889999999999999999987643   3332    11      255677788888777442 4689999999877655


Q ss_pred             hHHHHHHHHHh
Q 023866          244 TTIAGIHELEK  254 (276)
Q Consensus       244 ~t~~~l~~l~~  254 (276)
                      .  +.++++.+
T Consensus       182 a--~~~~~~~~  190 (197)
T PRK06444        182 T--NVINDLIE  190 (197)
T ss_pred             H--HHHHHHHH
Confidence            5  55555544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.62  E-value=3.2e-13  Score=118.37  Aligned_cols=249  Identities=13%  Similarity=0.087  Sum_probs=142.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------------cCchhhhcCCC
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSD   73 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aD   73 (276)
                      +|+.|||+|||+|.||+.++..|.++|+    +|+++ .|++.  +.+.+.|+...             .+..+....+|
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D   74 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD   74 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence            4667899999999999999999999999    99999 88753  44545443321             11223456899


Q ss_pred             EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecC------cccc---ccCcceEeec
Q 023866           74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPN------TPSA---VGEAATVMSL  144 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~------~~~~---~~~g~~~i~~  144 (276)
                      +||+|||..++.+++..+.. -+.++..++.-.+|+...+.+++.+|..+++.....      .|..   .+.|.+.+..
T Consensus        75 ~vilavK~~~~~~~~~~l~~-~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~  153 (313)
T PRK06249         75 WVLVGLKTTANALLAPLIPQ-VAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGY  153 (313)
T ss_pred             EEEEEecCCChHhHHHHHhh-hcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEec
Confidence            99999999998888887721 011111222333888445788888886666654321      1211   1223333322


Q ss_pred             CCCCC-----HHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH----------HHHHHHHH
Q 023866          145 GGTAT-----EEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI----------FLAIEALA  196 (276)
Q Consensus       145 ~~~~~-----~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~----------~~~~~~l~  196 (276)
                      .++.+     .+..+.+..+|+..|..+...++             -++.++++.++....+          ..++.-..
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~  233 (313)
T PRK06249        154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI  233 (313)
T ss_pred             CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence            12222     45667788899998976555544             3566778777644322          12222223


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCchHHHHHH-----HHHhCChHHHHHHHHHHHHH
Q 023866          197 DGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTTIAGIH-----ELEKSGFRGILMNAVVAAAK  270 (276)
Q Consensus       197 ~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~sp~g~t~~~l~-----~l~~~~~~~~~~~a~~~~~~  270 (276)
                      ..+.+.|++.+..  .+...+.-    ..+. ...+.++. ++...+-+-+..|.     .-++.|+.....+.+...++
T Consensus       234 ~va~a~Gi~~~~~--~~~~~~~~----~~~~~~~~sSM~q-D~~~gr~tEid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~  306 (313)
T PRK06249        234 QGAAACGHTLPEG--YADHMLAV----TERMPDYRPSMYH-DFEEGRPLELEAIYANPLAAARAAGCAMPRVEMLYQALE  306 (313)
T ss_pred             HHHHhcCCCCChh--HHHHHHHH----hhcCCCCCChHHH-HHHCCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            3355778763221  12222211    1111 12345554 44333333344433     33566888888887766554

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.61  E-value=1.6e-13  Score=127.16  Aligned_cols=153  Identities=18%  Similarity=0.130  Sum_probs=114.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~   64 (276)
                      +..||||||+|.||..||..|.++|+    +|++| |+++++++..           .+.|             +..+.+
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~   80 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA   80 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence            34789999999999999999999999    99999 9999988763           3344             456666


Q ss_pred             chhhhcCCCEEEEeeCcc-cHHHH-HHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VDKAA-VITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~~~v-l~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~  140 (276)
                      ..+ +.+||+||.||+.+ +++.. +.++.  ...+...++ +..+++ ++..+++.+. ..++++.|.-.|..+.. ..
T Consensus        81 ~~~-~~~aDlViEav~E~~~vK~~vf~~l~--~~~~~~ailasntStl-~i~~la~~~~~p~r~~G~hff~Pa~v~~-Lv  155 (507)
T PRK08268         81 LAD-LADCDLVVEAIVERLDVKQALFAQLE--AIVSPDCILATNTSSL-SITAIAAALKHPERVAGLHFFNPVPLMK-LV  155 (507)
T ss_pred             HHH-hCCCCEEEEcCcccHHHHHHHHHHHH--hhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEeecCCcccCe-eE
Confidence            655 57999999999855 56654 44442  122113344 455777 8888888765 35678888776666543 44


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      -++.+..++++.++.+.++++.+|+. +++++
T Consensus       156 Evv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d  187 (507)
T PRK08268        156 EVVSGLATDPAVADALYALARAWGKTPVRAKD  187 (507)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence            56677788999999999999999976 77765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.61  E-value=2.4e-13  Score=117.36  Aligned_cols=153  Identities=18%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC-------------ceeccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~   64 (276)
                      ++.||||||+|.||..||..++++|+    +|++| |++++.++.           +.+.|             ++.+++
T Consensus         4 ~~~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~   78 (286)
T PRK07819          4 AIQRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD   78 (286)
T ss_pred             CccEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC
Confidence            34689999999999999999999999    99999 999998765           22223             224555


Q ss_pred             chhhhcCCCEEEEeeCcc-cHH-HHHHHHhhccc--cccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VDK-AAVITEEAFGF--CCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~--~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      . +.+++||+||.|++.+ +++ .++..+.  ..  .++..+.+..+++ ++..++..+. ..+++..|+-.|..+...+
T Consensus        79 ~-~~~~~~d~ViEav~E~~~~K~~l~~~l~--~~~~~~~~il~snTS~~-~~~~la~~~~~~~r~~g~hf~~P~~~~~lv  154 (286)
T PRK07819         79 L-GDFADRQLVIEAVVEDEAVKTEIFAELD--KVVTDPDAVLASNTSSI-PIMKLAAATKRPGRVLGLHFFNPVPVLPLV  154 (286)
T ss_pred             H-HHhCCCCEEEEecccCHHHHHHHHHHHH--HhhCCCCcEEEECCCCC-CHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence            5 5579999999999865 455 4444442  11  1112233444666 7888887665 3578888888777766555


Q ss_pred             eEeecCCCCCHHHHHHHHHHhh-hcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFG-SVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~-~~G~~-~~~~e  171 (276)
                      . +..+..++++.++.+.+++. .+|+. +.+.+
T Consensus       155 E-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d  187 (286)
T PRK07819        155 E-LVPTLVTSEATVARAEEFASDVLGKQVVRAQD  187 (286)
T ss_pred             E-EeCCCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence            5 45577889999999999988 69976 66665

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.60  E-value=1.7e-13  Score=121.58  Aligned_cols=147  Identities=13%  Similarity=0.111  Sum_probs=95.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee----------------ccCchhhhcCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----------------LSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~----------------~~~~~~~~~~aD   73 (276)
                      +|||+|||+|.||++++..|.++|+    +|++| +|++. .+.+++.|+.+                ..+..+.+.++|
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   75 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATAD   75 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCC
Confidence            4789999999999999999999999    99999 98753 46666555432                112235578999


Q ss_pred             EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEE-ec--------CccccccCcceEeec
Q 023866           74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRV-MP--------NTPSAVGEAATVMSL  144 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~-~p--------~~~~~~~~g~~~i~~  144 (276)
                      +||+|||++++.+++.++.. .+.++..+++..+|+...+.+++.++..+++.. .|        ......+.|...+  
T Consensus        76 ~vil~vk~~~~~~~~~~l~~-~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~--  152 (341)
T PRK08229         76 LVLVTVKSAATADAAAALAG-HARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI--  152 (341)
T ss_pred             EEEEEecCcchHHHHHHHHh-hCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence            99999999999999888731 111112233334787335778888875444432 11        1111112233222  


Q ss_pred             CCCCCHHHHHHHHHHhhhcCceEE
Q 023866          145 GGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus       145 ~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      +.   .+.++.+.++|+..|..++
T Consensus       153 ~~---~~~~~~~~~~l~~~g~~~~  173 (341)
T PRK08229        153 EA---SPALRPFAAAFARAGLPLV  173 (341)
T ss_pred             cC---CchHHHHHHHHHhcCCCce
Confidence            21   2456889999999996533

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.59  E-value=1.6e-13  Score=121.46  Aligned_cols=154  Identities=14%  Similarity=0.083  Sum_probs=110.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---------C------ceeccCchhhhcCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~~aD   73 (276)
                      .+|||+|||+|.||++++..|.+.|     ++++| .|+++..+.+.+.         +      +..+++..++++++|
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD   79 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD   79 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence            4589999999999999999999887     57888 8999988877752         1      223456667788999


Q ss_pred             EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-------HHHHHHcCCC-cEEEEecCccccccCcceE--ee
Q 023866           74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-------SRWVEWTGHS-RFIRVMPNTPSAVGEAATV--MS  143 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-------~~l~~~l~~~-~vv~~~p~~~~~~~~g~~~--i~  143 (276)
                      +||++||++.++++++++.. -+.+..++++-.+|+ ..       +.+++.+++. ..+...|+++.+++.|...  +.
T Consensus        80 lVilavps~~~~~vl~~i~~-~l~~~~~vIsl~kGi-~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~vi  157 (341)
T PRK12439         80 VVVMGVPSHGFRGVLTELAK-ELRPWVPVVSLVKGL-EQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVL  157 (341)
T ss_pred             EEEEEeCHHHHHHHHHHHHh-hcCCCCEEEEEEeCC-cCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEE
Confidence            99999999999999999821 011111233333677 42       5677777643 3456789999988777632  22


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          144 LGGTATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      .+  .+++..+.++++|+.-+..++.+++
T Consensus       158 a~--~~~~~~~~v~~lf~~~~~~v~~s~D  184 (341)
T PRK12439        158 AM--PDQHLATRLSPLFRTRRFRVYTTDD  184 (341)
T ss_pred             Ee--CCHHHHHHHHHHhCCCCEEEEEcCc
Confidence            22  2677788999999988866666665

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.59  E-value=3.3e-13  Score=118.97  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=99.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--C------------ceeccCchhhh-cCCCEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDvI   75 (276)
                      |||+|||+|.||++++..|.++|+    +|++| +|+++..+.+++.  +            +..+.+..+.+ .++|+|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli   75 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI   75 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence            589999999999999999999998    99999 9999888877652  1            12334445555 589999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCCCCccc------HHHHHHHcCCCcEEE-EecCccccccCc-ceEeecCCC
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQR------WSRWVEWTGHSRFIR-VMPNTPSAVGEA-ATVMSLGGT  147 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~------~~~l~~~l~~~~vv~-~~p~~~~~~~~g-~~~i~~~~~  147 (276)
                      |++||+++++++++++....+.+...++...+|+..      .+.+++.++..++.. .-|+.+.....+ .+.+... +
T Consensus        76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~  154 (326)
T PRK14620         76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-G  154 (326)
T ss_pred             EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-c
Confidence            999999999999998831011111223333367722      356777776544432 234433333332 2222222 1


Q ss_pred             CCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          148 ATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       148 ~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      .+.+..+.+.++|+.-+..++.+++
T Consensus       155 ~~~~~~~~l~~~l~~~~~~~~~~~D  179 (326)
T PRK14620        155 QNETLGSSLISKLSNENLKIIYSQD  179 (326)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEecCc
Confidence            2445566677777766655666665

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.58  E-value=4.2e-13  Score=114.36  Aligned_cols=207  Identities=20%  Similarity=0.147  Sum_probs=138.0

Q ss_pred             CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-----HHHHHcCceeccCc
Q 023866           11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN   65 (276)
Q Consensus        11 ~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~~g~~~~~~~   65 (276)
                      |||.+.|+||-                    |.+||.+|+++||    +|++| ||++++.     +.+.+.|+..+.++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~   75 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD   75 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence            68999999983                    8899999999999    99999 9987655     35777899988889


Q ss_pred             hhhhcCCCEEEEeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC--------CCcEEEEecC-ccccc
Q 023866           66 NAVVEYSDVVVFSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG--------HSRFIRVMPN-TPSAV  135 (276)
Q Consensus        66 ~~~~~~aDvI~lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~--------~~~vv~~~p~-~~~~~  135 (276)
                      .++++++|+||+|+|.. ++++|+..+.. .+.+++ ++-..+++ +.+.+...|.        +..+..+||. .|..-
T Consensus        76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa-~L~~Ga-IVID~STI-sP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~  152 (341)
T TIGR01724        76 KEAAKHGEIHVLFTPFGKGTFSIARTIIE-HVPENA-VICNTCTV-SPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTP  152 (341)
T ss_pred             HHHHhCCCEEEEecCCHHHHHHHHHHHHh-cCCCCC-EEEECCCC-CHHHHHHHHHHHhhcCccccCeeccCCCCCCCCC
Confidence            99999999999999866 57888766521 111111 22222556 6655544432        2445666664 23333


Q ss_pred             cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHH---HH-HHcCCC
Q 023866          136 GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLP  205 (276)
Q Consensus       136 ~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~---~~-~~~Gl~  205 (276)
                      +++..++...     .-.++|+++++.++.+..|+. +.+..+....+.-+++   ...+....++.+   .+ +-.|-|
T Consensus       153 ~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s---~vta~~~~gil~y~~~~t~i~~ap  229 (341)
T TIGR01724       153 QHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGS---LVTAVALAGVLDYYYVGTQIINAP  229 (341)
T ss_pred             CCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4433333211     125789999999999999976 7777665554444332   211222223332   23 357888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Q 023866          206 RELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       206 ~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      .+.+.+.+..++...+.++..+|
T Consensus       230 ~~~~~~~~~~~l~~~a~l~~~~G  252 (341)
T TIGR01724       230 KEMIEKQILMTLQTMASLVETSG  252 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888888888888887654

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.57  E-value=5.2e-13  Score=123.38  Aligned_cols=153  Identities=18%  Similarity=0.141  Sum_probs=112.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~   64 (276)
                      +.+||+|||+|.||..||..|.++|+    +|++| |++++++++.           .+.|             ++.+++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~   78 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD   78 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence            46789999999999999999999999    99999 9999987653           2233             345566


Q ss_pred             chhhhcCCCEEEEeeCcc-cHHH-HHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VDKA-AVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~~~-vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~  140 (276)
                      ..+ +.+||+||.|++.+ +++. ++.++.  ...++..++ +..+++ ++..+.+.+. ..+++.+|.-.|..+.. ..
T Consensus        79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~--~~~~~~~IlasnTStl-~i~~iA~~~~~p~r~~G~HFf~Papv~~-Lv  153 (503)
T TIGR02279        79 LHA-LADAGLVIEAIVENLEVKKALFAQLE--ELCPADTIIASNTSSL-SITAIAAGLARPERVAGLHFFNPAPVMA-LV  153 (503)
T ss_pred             HHH-hCCCCEEEEcCcCcHHHHHHHHHHHH--hhCCCCeEEEECCCCC-CHHHHHHhcCcccceEEEeccCccccCc-eE
Confidence            654 57999999999854 4554 444552  111112334 344777 8888887775 35788888766665543 44


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      -++.++.++++.++.+.++++.+|+. +++++
T Consensus       154 Evv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d  185 (503)
T TIGR02279       154 EVVSGLATAAEVAEQLYETALAWGKQPVHCHS  185 (503)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence            56778888999999999999999986 77764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.57  E-value=1.3e-12  Score=114.17  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=100.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhhcCCCEEEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF   77 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDvI~l   77 (276)
                      |||+|||+|.||..++..|.++|+    +|+++ +| +++.+.+++.|+.+             .++..+....+|+||+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            689999999999999999999999    99999 99 88888887765432             2233455578999999


Q ss_pred             eeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccc------cc---cCcceEeecCCCC
Q 023866           78 SVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPS------AV---GEAATVMSLGGTA  148 (276)
Q Consensus        78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~------~~---~~g~~~i~~~~~~  148 (276)
                      |||++++++++.++.. -+.++..++...+|+...+.+.+.++..+++......+.      .+   +.+...+...++.
T Consensus        75 avk~~~~~~~~~~l~~-~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~  153 (305)
T PRK12921         75 AVKAYQLDAAIPDLKP-LVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQ  153 (305)
T ss_pred             EecccCHHHHHHHHHh-hcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCC
Confidence            9999999999988831 011112233333788346778888875454443222221      11   1122222111222


Q ss_pred             CHHHHHHHHHHhhhcCceEEcCCC
Q 023866          149 TEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      ..+..+.+.++|+..|..+...++
T Consensus       154 ~~~~~~~l~~~l~~~g~~~~~~~d  177 (305)
T PRK12921        154 RSERTRAVRDALAGARLEVVLSEN  177 (305)
T ss_pred             cCHHHHHHHHHHHhCCCCceecHH
Confidence            345667788888888865444444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.55  E-value=9.9e-14  Score=111.59  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=107.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH-cCce-eccCchhhhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~-~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ||+|+|+|.|+||+++++.|.++||    +|.+. +|+ +++.+.+.+ .+.. ...+++++++.+|+||++||-+.+.+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~   75 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD   75 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence            6899999999999999999999999    99988 554 455554444 3433 23578889999999999999999988


Q ss_pred             HHHHHhh-ccccccCCcccCC-----------------CCcccHHHHHHHcCCCcEEEEecCccccc-------cCcceE
Q 023866           87 AVITEEA-FGFCCCRSEIERP-----------------SGLQRWSRWVEWTGHSRFIRVMPNTPSAV-------GEAATV  141 (276)
Q Consensus        87 vl~~~~~-~~~~~~~~~l~~~-----------------~g~~~~~~l~~~l~~~~vv~~~p~~~~~~-------~~g~~~  141 (276)
                      ++.++.. .+   ++-+++..                 .+. ..+.+++++|+.+++++..+.+...       +.....
T Consensus        76 v~~~l~~~~~---~KIvID~tnp~~~~~~~~~~~~~~~~~s-aae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v  151 (211)
T COG2085          76 VLAELRDALG---GKIVIDATNPIEVNGEPGDLYLVPSEGS-AAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV  151 (211)
T ss_pred             HHHHHHHHhC---CeEEEecCCCccccCCccccccCCCCCc-HHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence            8888731 11   12222211                 222 3477899999888999877655432       112233


Q ss_pred             eecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          142 MSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       142 i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      +++++  +.++.+.+.++.+.+|.. +-.+.
T Consensus       152 ~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         152 LVAGD--DAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             EEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence            44453  788999999999999964 65554

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.55  E-value=2.3e-13  Score=123.60  Aligned_cols=190  Identities=16%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~   70 (276)
                      |||+|||+|.||.+++..|.++||    +|++| |+++++.+.+.+                   .| +..+.+..++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            589999999999999999999999    99999 999999887764                   23 455667778889


Q ss_pred             CCCEEEEeeCcc----------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHH-HHcC---C----C-cEEEEec
Q 023866           71 YSDVVVFSVKPQ----------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWV-EWTG---H----S-RFIRVMP  129 (276)
Q Consensus        71 ~aDvI~lav~~~----------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~-~~l~---~----~-~vv~~~p  129 (276)
                      +||+||+|||..          .+.+++.++.. .++++.-++. .+++  .+.+.+. ..+.   +    . -.+...|
T Consensus        76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~-~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P  153 (411)
T TIGR03026        76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAK-HLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP  153 (411)
T ss_pred             hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHH-hcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence            999999999854          26666666621 1111122222 1333  0122332 2221   1    1 1123334


Q ss_pred             CccccccCcce--------EeecCCCCCHHHHHHHHHHhhhcC-c-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHH--
Q 023866          130 NTPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGSGPAYIFLAIEALAD--  197 (276)
Q Consensus       130 ~~~~~~~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~G-~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~--  197 (276)
                      ..   ...|..        .+..+  .+++..+.++++|+.++ . .+++++-.-..++.+.  .+.|.+..+..+.|  
T Consensus       154 e~---~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~ia~~nE~~  226 (411)
T TIGR03026       154 EF---LREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA--ENTFRAVKIAFANELA  226 (411)
T ss_pred             Cc---CCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            32   222221        23333  37899999999999997 3 4666553333333333  24454444444444  


Q ss_pred             -HHHHcCCCHHHHHHHHH
Q 023866          198 -GGVAAGLPRELALGLAS  214 (276)
Q Consensus       198 -~~~~~Gl~~~~a~~~~~  214 (276)
                       .+.+.|+|.++..+++.
T Consensus       227 ~la~~~GiD~~~v~~~~~  244 (411)
T TIGR03026       227 RICEALGIDVYEVIEAAG  244 (411)
T ss_pred             HHHHHhCCCHHHHHHHhC
Confidence             35789999998877654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.53  E-value=9.1e-13  Score=115.20  Aligned_cols=184  Identities=17%  Similarity=0.188  Sum_probs=114.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      +.|||+|||+|+||++|+..|.++||    +|++| +|++.             .+..++++++|+||+++|.+.+++++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~   64 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA   64 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence            56899999999999999999999999    99999 99853             35667788999999999999999998


Q ss_pred             HHHhhccccccCCcccCCCCcc-----c-HHHHHHHcCCCcEEEE-ecCccccccCc--ceEeecCCCCCHHHHHHHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQ-----R-WSRWVEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~-----~-~~~l~~~l~~~~vv~~-~p~~~~~~~~g--~~~i~~~~~~~~~~~~~v~~l  159 (276)
                      .++....+.+...+++..+|+.     . .+.++..+++.+++.. -|+.+..+..+  ...+..+  .+++..+.++++
T Consensus        65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l  142 (308)
T PRK14619         65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI  142 (308)
T ss_pred             HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence            8773111222122333323441     1 1334445555565532 24444433222  2223323  378899999999


Q ss_pred             hhhcCceEEcCCCCch--------hhhhh-cC------c-hHHHHHHHHHHHHHH---HHHcCCCHHHHHHH
Q 023866          160 FGSVGKIWRADEKLFD--------AITGL-SG------S-GPAYIFLAIEALADG---GVAAGLPRELALGL  212 (276)
Q Consensus       160 l~~~G~~~~~~e~~~~--------~~~a~-~g------~-~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~  212 (276)
                      |+..|..++...+..-        .+.++ +|      . .+.....+..++.|.   +.+.|++++..+++
T Consensus       143 l~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~  214 (308)
T PRK14619        143 FSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL  214 (308)
T ss_pred             hCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence            9999965433333111        01111 11      0 122234445555554   56889998887764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.53  E-value=1.3e-12  Score=112.20  Aligned_cols=157  Identities=16%  Similarity=0.143  Sum_probs=111.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI   75 (276)
                      ++||+|||+|.+|++||.-|.++||    +|.+| .|+++..+++...              ++..++|..+++++||+|
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i   75 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII   75 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence            4799999999999999999999999    99999 9999988887651              234567788889999999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCCCCcc------cHHHHHHHcCCCcE-EEEecCccccccCcc-eEeecCCC
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQ------RWSRWVEWTGHSRF-IRVMPNTPSAVGEAA-TVMSLGGT  147 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~------~~~~l~~~l~~~~v-v~~~p~~~~~~~~g~-~~i~~~~~  147 (276)
                      +++||.+.+++++.++. .-+.++..+++...|+.      -.+.+++.+|..++ +-.-||++.++.+|. +.++.+ .
T Consensus        76 v~avPs~~~r~v~~~l~-~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~va-s  153 (329)
T COG0240          76 VIAVPSQALREVLRQLK-PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVA-S  153 (329)
T ss_pred             EEECChHHHHHHHHHHh-hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEe-c
Confidence            99999999999999982 11111122222224441      12556777775433 334588888887764 333322 2


Q ss_pred             CCHHHHHHHHHHhhhcCceEEcCCCC
Q 023866          148 ATEEDGELIGKLFGSVGKIWRADEKL  173 (276)
Q Consensus       148 ~~~~~~~~v~~ll~~~G~~~~~~e~~  173 (276)
                      .+++..+.++.+|+.=-..++.+++.
T Consensus       154 ~d~~~a~~v~~~f~~~~Frvy~~~Dv  179 (329)
T COG0240         154 NDQEAAEKVQALFSSPYFRVYTSTDV  179 (329)
T ss_pred             CCHHHHHHHHHHhCCCcEEEEecCch
Confidence            37778888999998833346666653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.52  E-value=7.2e-12  Score=108.99  Aligned_cols=243  Identities=15%  Similarity=0.145  Sum_probs=149.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc------------CchhhhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDvI~la   78 (276)
                      |||.|+|+|.||+.++..|.++|+    +|+++ .|++. ++++++.|+.+..            ...+....+|+||++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~   74 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT   74 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence            799999999999999999999997    99999 78755 8888887765432            122445689999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEe-cCc--------cccccCcceEe
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVM-PNT--------PSAVGEAATVM  142 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~-p~~--------~~~~~~g~~~i  142 (276)
                      ||..++.++++.+        .+++.+.       +|+...+.+++.++..+++..+ +..        -...+.|.+.+
T Consensus        75 vKa~q~~~al~~l--------~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          75 VKAYQLEEALPSL--------APLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             eccccHHHHHHHh--------hhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            9999999999999        6666554       8886667788888754444322 211        11223333333


Q ss_pred             ecCCCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHH-------HHHHHHHHHH---HH
Q 023866          143 SLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAY-------IFLAIEALAD---GG  199 (276)
Q Consensus       143 ~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~-------~~~~~~~l~~---~~  199 (276)
                      ..-.+..++..+.+.++|+..|...+..++             -++.++++..|-..-       ...+...+.|   .+
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~  226 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA  226 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence            322333457888899999888866555443             355666666654332       1222222333   34


Q ss_pred             HHcCCCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH-----HHHHhCChHHHHHHHHHHHHHHHh
Q 023866          200 VAAGLPRE-LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI-----HELEKSGFRGILMNAVVAAAKRSR  273 (276)
Q Consensus       200 ~~~Gl~~~-~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l-----~~l~~~~~~~~~~~a~~~~~~r~~  273 (276)
                      .+.|++.+ +..+.+......+.  .   ...+.++.|.. ..+-+-+..|     +.-++.|+.....+.+...++...
T Consensus       227 ~~~g~~~~~~~~~~v~~~~~~~~--~---~~~sSM~qDl~-~gr~tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e  300 (307)
T COG1893         227 RAEGVELPEEVVERVLAVIRATD--A---ENYSSMLQDLE-KGRPTEIDAINGAVVRLAKKHGLATPVNDTLYALLKAKE  300 (307)
T ss_pred             HhccCCCCHHHHHHHHHHHHhcc--c---ccCchHHHHHH-cCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            57774322 22233333333221  0   11234444433 3333434443     344667888888888877666543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.1e-11  Score=100.70  Aligned_cols=206  Identities=17%  Similarity=0.195  Sum_probs=136.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh---cCCCEEEEeeCcc-cHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDvI~lav~~~-~~~~   86 (276)
                      |+||.||+|+||..|+.+|++.||    +|++| |++++..+.++..|++.+++..+.+   ...-+|-++||.. .+.+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~   75 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA   75 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence            689999999999999999999999    99999 9999999999999987777766654   4578999999987 6788


Q ss_pred             HHHHHhhccccccCCcccCC-----CCccc--HHHHHH---HcC-CCcEEEEecCcccc-ccCcceEeecCCCCCHHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERP-----SGLQR--WSRWVE---WTG-HSRFIRVMPNTPSA-VGEAATVMSLGGTATEEDGE  154 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~-----~g~~~--~~~l~~---~l~-~~~vv~~~p~~~~~-~~~g~~~i~~~~~~~~~~~~  154 (276)
                      ++.++        .+.++..     .|- +  .+.+++   +.. +.+++.+-.....+ ...|.+.+..+   +++.++
T Consensus        76 vi~~l--------a~~L~~GDivIDGGN-S~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~  143 (300)
T COG1023          76 VIDDL--------APLLSAGDIVIDGGN-SNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVE  143 (300)
T ss_pred             HHHHH--------HhhcCCCCEEEECCc-cchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHH
Confidence            99888        6666654     232 1  122322   222 45666554332222 23577777765   789999


Q ss_pred             HHHHHhhhcCc--e--EEcCCCCchhhhhhcCchHH-------HHHHHHHHHHHHHH---H--cCCCHHHHHHHHHH-HH
Q 023866          155 LIGKLFGSVGK--I--WRADEKLFDAITGLSGSGPA-------YIFLAIEALADGGV---A--AGLPRELALGLASQ-TV  217 (276)
Q Consensus       155 ~v~~ll~~~G~--~--~~~~e~~~~~~~a~~g~~p~-------~~~~~~~~l~~~~~---~--~Gl~~~~a~~~~~~-~~  217 (276)
                      .++++|+.+..  .  .++++         +|++..       .=|.++++++|...   +  ..+|.++.-++-.+ +.
T Consensus       144 ~~~pif~~lA~ge~Gyl~~Gp---------~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSV  214 (300)
T COG1023         144 RLEPIFKALAPGEDGYLYCGP---------SGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSV  214 (300)
T ss_pred             HHHHHHHhhCcCcCccccccC---------CCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcch
Confidence            99999998863  2  34566         454421       12557778877642   3  44555554443222 22


Q ss_pred             HHH-----HHHHHhcCCChHHHHHhcCCCC
Q 023866          218 LGA-----ASMVTKSGKHPGQLKDDVASPG  242 (276)
Q Consensus       218 ~g~-----~~~~~~~~~~~~~l~~~v~sp~  242 (276)
                      .++     +.-+.+...+.+++...+.+.|
T Consensus       215 IrSWLldLt~~Af~~d~~L~q~~g~v~dSG  244 (300)
T COG1023         215 IRSWLLDLTAEAFKKDPDLDQISGRVSDSG  244 (300)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHhcCeeccCC
Confidence            222     2222233346677777776543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.50  E-value=8.5e-13  Score=106.25  Aligned_cols=148  Identities=18%  Similarity=0.207  Sum_probs=100.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH------------------------cCceeccCchh
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA   67 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~   67 (276)
                      ||+|||+|.||..+|..+..+|+    +|++| |++++.++...+                        ..+...++..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence            79999999999999999999999    99999 999987643221                        13455677777


Q ss_pred             hhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEee
Q 023866           68 VVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMS  143 (276)
Q Consensus        68 ~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~  143 (276)
                      ++ +||+||-|++-. .+ ++++.++.  ...+...++ +..+++ ++..|.+.++ ..+++.+|+-.|.....-+. +.
T Consensus        76 ~~-~adlViEai~E~l~~K~~~~~~l~--~~~~~~~ilasnTSsl-~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVE-vv  150 (180)
T PF02737_consen   76 AV-DADLVIEAIPEDLELKQELFAELD--EICPPDTILASNTSSL-SISELAAALSRPERFIGMHFFNPPHLMPLVE-VV  150 (180)
T ss_dssp             GC-TESEEEE-S-SSHHHHHHHHHHHH--CCS-TTSEEEE--SSS--HHHHHTTSSTGGGEEEEEE-SSTTT--EEE-EE
T ss_pred             Hh-hhheehhhccccHHHHHHHHHHHH--HHhCCCceEEecCCCC-CHHHHHhccCcCceEEEEecccccccCceEE-Ee
Confidence            76 999999999754 23 57788773  111112222 333777 8899988876 36899999877776444344 45


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866          144 LGGTATEEDGELIGKLFGSVGKI-WRA  169 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~  169 (276)
                      +++.++++.++.+..+++.+|+. +.+
T Consensus       151 ~~~~T~~~~~~~~~~~~~~~gk~pv~v  177 (180)
T PF02737_consen  151 PGPKTSPETVDRVRALLRSLGKTPVVV  177 (180)
T ss_dssp             E-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            57789999999999999999976 554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.50  E-value=7.7e-13  Score=119.93  Aligned_cols=190  Identities=15%  Similarity=0.038  Sum_probs=112.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-------------------CceeccCchhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~   68 (276)
                      |.++||+|||+|.||.+||..|.++||    +|++| |+++++.+.+..-                   |.....+   .
T Consensus         1 m~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~   72 (415)
T PRK11064          1 MSFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---T   72 (415)
T ss_pred             CCccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---c
Confidence            456899999999999999999999999    99999 9999999886531                   1111111   1


Q ss_pred             hcCCCEEEEeeCc----------ccHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcC----C--Cc-------
Q 023866           69 VEYSDVVVFSVKP----------QVDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTG----H--SR-------  123 (276)
Q Consensus        69 ~~~aDvI~lav~~----------~~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~----~--~~-------  123 (276)
                      +++||+||+|||.          ..+.+++.++.. .++++.-++.. +++  .+.+.+...+.    .  .+       
T Consensus        73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~  150 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAP-VLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQAGEQA  150 (415)
T ss_pred             cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHH-hCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccccCCC
Confidence            3479999999986          466677666621 11111112211 333  12333433221    1  01       


Q ss_pred             --EEEEecCccccccCc--------ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHH
Q 023866          124 --FIRVMPNTPSAVGEA--------ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAI  192 (276)
Q Consensus       124 --vv~~~p~~~~~~~~g--------~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~  192 (276)
                        .+-.-|.   -+..|        ...++.+  .+++..+.+.++++.++.. ++++.-.-..++.+.  .+.|.+..+
T Consensus       151 ~f~v~~~PE---~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~i  223 (415)
T PRK11064        151 DINIAYCPE---RVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLT--ENSFRDVNI  223 (415)
T ss_pred             CeEEEECCC---ccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHH--HHHHHHHHH
Confidence              0111221   11111        1233433  3788899999999999864 555543333344433  244544444


Q ss_pred             HHH---HHHHHHcCCCHHHHHHHHH
Q 023866          193 EAL---ADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       193 ~~l---~~~~~~~Gl~~~~a~~~~~  214 (276)
                      ..+   ...+.+.|+|.++..+.+.
T Consensus       224 a~~nE~~~lae~~GiD~~~v~~~~~  248 (415)
T PRK11064        224 AFANELSLICADQGINVWELIRLAN  248 (415)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            444   3446789999988776654

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.49  E-value=1e-11  Score=113.22  Aligned_cols=182  Identities=13%  Similarity=0.072  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhhhcC---CCEEEEeeCcc-cHHHHHHHH
Q 023866           21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKAAVITE   91 (276)
Q Consensus        21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~vl~~~   91 (276)
                      ||..|+++|+++||    +|.+| ||++++.+.+.+.     |+..+.++.++++.   +|+||++||.. .+++|+.++
T Consensus         1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l   75 (459)
T PRK09287          1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL   75 (459)
T ss_pred             CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence            89999999999999    99999 9999999999873     47888899998874   89999999865 688998777


Q ss_pred             hhccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEEe-cCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCc-e
Q 023866           92 EAFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-I  166 (276)
Q Consensus        92 ~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~-~  166 (276)
                      . ..+.++.-++...+.. .......+.+.  +.+++.+- ...+.....|.++++.|   +++.++.++++|+.++. .
T Consensus        76 ~-~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~  151 (459)
T PRK09287         76 L-PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKV  151 (459)
T ss_pred             H-hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhh
Confidence            2 1111111122221112 01122223332  34455431 11222223566655544   79999999999999984 2


Q ss_pred             -------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHH
Q 023866          167 -------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLA  213 (276)
Q Consensus       167 -------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~-~~Gl~~~~a~~~~  213 (276)
                             .++++.---.+..+.  .+.+.+..++++.|+.   . +.|++.++..+++
T Consensus       152 ~~g~~c~~~vG~~GaGh~vKmv--hN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~  207 (459)
T PRK09287        152 EDGEPCVTYIGPDGAGHYVKMV--HNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF  207 (459)
T ss_pred             cCCCCceeeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                   678875333333332  2345566777888874   3 4799999888877

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.46  E-value=7.7e-13  Score=104.28  Aligned_cols=114  Identities=16%  Similarity=0.235  Sum_probs=84.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEEEE
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI~l   77 (276)
                      ||+|||+|+||.++|..|.++|+    +|++| .|+++..+.+.+.              .+.+++|.+++++++|+||+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii   75 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII   75 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence            79999999999999999999999    99999 9999998888761              23456778889999999999


Q ss_pred             eeCcccHHHHHHHHhhccccccCCcccCC-------CCcc------cHHHHHHHcCCCcEE-EEecCccccccCc
Q 023866           78 SVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQ------RWSRWVEWTGHSRFI-RVMPNTPSAVGEA  138 (276)
Q Consensus        78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~------~~~~l~~~l~~~~vv-~~~p~~~~~~~~g  138 (276)
                      +||.+.++++++++        ++++...       .|+.      -.+.+++.++..++. -.-|+++.++..+
T Consensus        76 avPs~~~~~~~~~l--------~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~  142 (157)
T PF01210_consen   76 AVPSQAHREVLEQL--------APYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEG  142 (157)
T ss_dssp             -S-GGGHHHHHHHH--------TTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT
T ss_pred             cccHHHHHHHHHHH--------hhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcC
Confidence            99999999999999        5555333       4440      125677777754332 2347777776555

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.46  E-value=1e-11  Score=108.37  Aligned_cols=237  Identities=14%  Similarity=0.122  Sum_probs=142.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-CceeccC-----------chhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVLSD-----------NNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~~-----------~~~~~~~aDvI~l   77 (276)
                      .|||+|||+|.||+.++..|.++|+    +|+++ .|++++++.+++. |+.+.++           ..+....+|+||+
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv   76 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL   76 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence            5799999999999999999999998    99999 9988888888763 5443211           1122357899999


Q ss_pred             eeCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEecCc------ccc---ccCcceE
Q 023866           78 SVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVMPNT------PSA---VGEAATV  141 (276)
Q Consensus        78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~p~~------~~~---~~~g~~~  141 (276)
                      |||.+++.+++..+        ++++.+.       +|+...+.+++.++..+++.....+      |..   .+.|.+ 
T Consensus        77 ~vK~~~~~~al~~l--------~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~-  147 (305)
T PRK05708         77 ACKAYDAEPAVASL--------AHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFT-  147 (305)
T ss_pred             ECCHHhHHHHHHHH--------HhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEE-
Confidence            99999999999888        5656543       8885567888888854555433222      211   122222 


Q ss_pred             eecCCCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHH-------HHHHHHHHHHHHHHH
Q 023866          142 MSLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA-------YIFLAIEALADGGVA  201 (276)
Q Consensus       142 i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~-------~~~~~~~~l~~~~~~  201 (276)
                       ..+.. +.+..+.+.++|+..|.....+++             -++.++++.++...       .+..++..+.+.+.+
T Consensus       148 -~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a  225 (305)
T PRK05708        148 -WLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRR  225 (305)
T ss_pred             -EEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHH
Confidence             22321 234456777888888865444443             25666777654332       233334444445667


Q ss_pred             cCCCH--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHH
Q 023866          202 AGLPR--ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAA  269 (276)
Q Consensus       202 ~Gl~~--~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~  269 (276)
                      .|++.  +...+.+......+      ....++++.|.. ..+-+-++.     ++.-++.|+.....+.+...+
T Consensus       226 ~G~~~~~~~~~~~~~~~~~~~------~~~~sSM~qD~~-~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~~v  293 (305)
T PRK05708        226 CGQPAAAANLHEEVQRVIQAT------AANYSSMYQDVR-AGRRTEISYLLGYACRAADRHGLPLPRLQHLQQRL  293 (305)
T ss_pred             cCCCccHHHHHHHHHHHHHhc------cCCCcHHHHHHH-cCCceeehhhhhHHHHHHHHcCCCCchHHHHHHHH
Confidence            88753  33333333222111      122345555544 222222233     334466687777776665443

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.42  E-value=2.3e-11  Score=107.87  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=105.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCeEEEEeCCCHH-----HHHHHHHc--------------Cceec
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL   62 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~~   62 (276)
                      +.+||+|||+|.||+++|..|.+.|       +    +|.+| .|+++     ..+.+.+.              ++..+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t   84 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV   84 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence            4589999999999999999999887       5    99999 88875     25555531              24456


Q ss_pred             cCchhhhcCCCEEEEeeCcccHHHHHHHHhhc-cccccCCcccCCCCcc--------cHHHHHHHcCCCcEE-EEecCcc
Q 023866           63 SDNNAVVEYSDVVVFSVKPQVDKAAVITEEAF-GFCCCRSEIERPSGLQ--------RWSRWVEWTGHSRFI-RVMPNTP  132 (276)
Q Consensus        63 ~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~-~~~~~~~~l~~~~g~~--------~~~~l~~~l~~~~vv-~~~p~~~  132 (276)
                      +|..++++++|+||++|||+.+++++.++... .+.+...+++..+|+.        -.+.+++.++. ++. -.-|+++
T Consensus        85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~-~~~~LsGPs~A  163 (365)
T PTZ00345         85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI-PCCALSGANVA  163 (365)
T ss_pred             cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC-CeEEEECCCHH
Confidence            77778899999999999999999999998310 1111112343335551        12445666653 432 3458888


Q ss_pred             ccccCcc-eEeecCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          133 SAVGEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       133 ~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      .++..+. +.++.+. .+.+..+.++.+|+.=-..++.++|
T Consensus       164 ~Eva~~~pt~~vias-~~~~~a~~~~~lf~~~~frvy~s~D  203 (365)
T PTZ00345        164 NDVAREEFSEATIGC-EDKDDALIWQRLFDRPYFKINCVPD  203 (365)
T ss_pred             HHHHcCCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEEcCC
Confidence            8876653 2222221 2677788889998754444566655

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.41  E-value=4.4e-11  Score=102.85  Aligned_cols=201  Identities=15%  Similarity=0.147  Sum_probs=126.4

Q ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      .....++|||||+|.||.++|++|...|+    +|+++ +|.....+.+...|.... +..+++++||+|++++|....+
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~   85 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA   85 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence            34567899999999999999999999999    99999 776555455555687654 7889999999999999976556


Q ss_pred             HHHH-HHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceE-eecCCCC
Q 023866           86 AAVI-TEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATV-MSLGGTA  148 (276)
Q Consensus        86 ~vl~-~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~-i~~~~~~  148 (276)
                      .++. ++        .+.+.++      -|. ++. .....|  +..++-+-|-.|...       |.|+.. +......
T Consensus        86 ~V~~~ei--------l~~MK~GaiL~f~hgf-ni~-~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~  155 (335)
T PRK13403         86 HVYKAEV--------EENLREGQMLLFSHGF-NIH-FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDA  155 (335)
T ss_pred             HHHHHHH--------HhcCCCCCEEEECCCc-cee-cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECC
Confidence            7764 23        2333332      233 221 111222  345665566665432       456543 3333345


Q ss_pred             CHHHHHHHHHHhhhcCce---EEcC----C---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023866          149 TEEDGELIGKLFGSVGKI---WRAD----E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL  218 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~~---~~~~----e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~  218 (276)
                      +..+.+........+|..   +..+    |   +.+..-..++|...    .++.+-.|..+++|.++|.|+--..+=++
T Consensus       156 sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~----~li~~gfe~lveaGy~pe~Ayfe~~he~k  231 (335)
T PRK13403        156 TGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT----ALVKAGFETLTEGGYRPEIAYFECLHELK  231 (335)
T ss_pred             CCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            666788888999999942   2211    2   23333445554333    33445555667899999988754444444


Q ss_pred             HHHHHHHh
Q 023866          219 GAASMVTK  226 (276)
Q Consensus       219 g~~~~~~~  226 (276)
                      -...++.+
T Consensus       232 li~dli~e  239 (335)
T PRK13403        232 LIVDLMYE  239 (335)
T ss_pred             HHHHHHHH
Confidence            44555543

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.39  E-value=1.3e-11  Score=104.87  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=116.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav~~~~~~~v   87 (276)
                      ...+|||||.|+||.-+|..|.++||    .+.++ +|+. --+..++.|....+.+.++++ ..|+|++||....++.+
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsieki  124 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKI  124 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHH
Confidence            35789999999999999999999999    99999 9875 333444477766666666654 69999999999999999


Q ss_pred             HHHHhhccccccCCcccCC---CCcc-----cHHHHHHHcC-CCcEEEEecCcccc-cc---CcceEeecC-----CCCC
Q 023866           88 VITEEAFGFCCCRSEIERP---SGLQ-----RWSRWVEWTG-HSRFIRVMPNTPSA-VG---EAATVMSLG-----GTAT  149 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~---~g~~-----~~~~l~~~l~-~~~vv~~~p~~~~~-~~---~g~~~i~~~-----~~~~  149 (276)
                      +...   ++.    .+..+   .|+.     ..+-+.+++| +..++.+||.+... +.   +|...++-.     ....
T Consensus       125 laty---pfq----rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r  197 (480)
T KOG2380|consen  125 LATY---PFQ----RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASR  197 (480)
T ss_pred             HHhc---Cch----hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccc
Confidence            9876   221    02111   2221     2356778888 68899999985443 32   344333321     1233


Q ss_pred             HHHHHHHHHHhhhcCce-EEcCCCCchhhhhhc
Q 023866          150 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLS  181 (276)
Q Consensus       150 ~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~  181 (276)
                      +|..+.+.++|.+.|.. ++++-++||.++|-+
T Consensus       198 ~ercE~fleIf~cegckmVemS~eeHDkiaAds  230 (480)
T KOG2380|consen  198 PERCEFFLEIFACEGCKMVEMSYEEHDKIAADS  230 (480)
T ss_pred             hHHHHHHHHHHHhcCCeEEEEEeecccccccch
Confidence            78999999999999965 999999999998864

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.37  E-value=3.9e-11  Score=108.95  Aligned_cols=191  Identities=15%  Similarity=0.111  Sum_probs=108.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce----------------eccCchhhhcCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----------------VLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~aD   73 (276)
                      .|||||||+|.||..||..|.+ ||    +|++| |+++++.+.+.+ |..                .+++..+++++||
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad   78 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN   78 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence            4899999999999999999776 68    99999 999999999883 321                2344556789999


Q ss_pred             EEEEeeCcc-------cHHHHH---HHHhhccccccCCcccCCCCc--c-cHHHHHHHcC--------CCcEEEEecCcc
Q 023866           74 VVVFSVKPQ-------VDKAAV---ITEEAFGFCCCRSEIERPSGL--Q-RWSRWVEWTG--------HSRFIRVMPNTP  132 (276)
Q Consensus        74 vI~lav~~~-------~~~~vl---~~~~~~~~~~~~~~l~~~~g~--~-~~~~l~~~l~--------~~~vv~~~p~~~  132 (276)
                      ++|+|||..       ++..++   ..+.. .++++.-++.. +++  . +.+.++..+.        ....+..-|..-
T Consensus        79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~-~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v  156 (425)
T PRK15182         79 FYIITVPTPINTYKQPDLTPLIKASETVGT-VLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI  156 (425)
T ss_pred             EEEEEcCCCCCCCCCcchHHHHHHHHHHHH-hcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence            999999732       334444   34411 11111112211 333  0 2222222221        112233333211


Q ss_pred             cc---cc--CcceEeecCCCCCHHHHHHHHHHhhhcC--ceEEcCCCCchhhhhhcCchHHHHHHHHH---HHHHHHHHc
Q 023866          133 SA---VG--EAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYIFLAIE---ALADGGVAA  202 (276)
Q Consensus       133 ~~---~~--~g~~~i~~~~~~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~~p~~~~~~~~---~l~~~~~~~  202 (276)
                      ..   ..  .....++.|  .+++..+.+.++++.+.  ..++++.-.-..++.+.  .+.|.+..+.   .+...+.+.
T Consensus       157 ~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~--~N~~~av~Ia~~NE~a~lae~~  232 (425)
T PRK15182        157 NPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVI--ENTQRDLNIALVNELAIIFNRL  232 (425)
T ss_pred             CCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence            11   00  112224434  35777889999999885  23555443333333333  2445444333   344456799


Q ss_pred             CCCHHHHHHHH
Q 023866          203 GLPRELALGLA  213 (276)
Q Consensus       203 Gl~~~~a~~~~  213 (276)
                      |+|.++..+.+
T Consensus       233 GiD~~~v~~a~  243 (425)
T PRK15182        233 NIDTEAVLRAA  243 (425)
T ss_pred             CcCHHHHHHHh
Confidence            99999887763

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.37  E-value=6.1e-11  Score=114.32  Aligned_cols=153  Identities=20%  Similarity=0.097  Sum_probs=112.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------CceeccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~   64 (276)
                      ...||+|||+|.||..||..+..+|+    +|+++ |++++.++...           +.             .++.+++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  386 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD  386 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence            45789999999999999999999999    99999 99998765321           11             2334444


Q ss_pred             chhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~  140 (276)
                      . +.+++||+||-|++-+ .+ .+++.++.  ...+...++ +..+++ ++..|.+.+. ..+++.+|+-.|...-.-+.
T Consensus       387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~--~~~~~~~ilasNTSsl-~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE  462 (715)
T PRK11730        387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVE--QKVREDTILASNTSTI-SISLLAKALKRPENFCGMHFFNPVHRMPLVE  462 (715)
T ss_pred             H-HHhcCCCEEEecccCcHHHHHHHHHHHH--hhCCCCcEEEEcCCCC-CHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence            4 5579999999999754 33 47777773  111112333 334777 8999998876 36899999877776554444


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                       +..++.++++.++.+..+++.+|+. +.+.+
T Consensus       463 -vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d  493 (715)
T PRK11730        463 -VIRGEKTSDETIATVVAYASKMGKTPIVVND  493 (715)
T ss_pred             -eeCCCCCCHHHHHHHHHHHHHhCCceEEecC
Confidence             4467788999999999999999976 66654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.36  E-value=6.7e-11  Score=113.85  Aligned_cols=154  Identities=18%  Similarity=0.100  Sum_probs=114.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c-------------Cceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~   63 (276)
                      ...+||+|||+|.||..||..+..+|+    +|+++ |++++.+++..+           .             .++.+.
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  385 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL  385 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC
Confidence            356789999999999999999999999    99999 999987654221           1             233444


Q ss_pred             CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||-||+-+ .+ .+++.++.  ...+...++ +..+++ ++..|++.+. ..+++..|+-.|...-.-+
T Consensus       386 ~~-~~~~~aDlViEav~E~l~~K~~vf~~l~--~~~~~~~ilasnTS~l-~i~~ia~~~~~p~r~ig~Hff~P~~~~~lv  461 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAVVENPKVKAAVLAEVE--QHVREDAILASNTSTI-SISLLAKALKRPENFCGMHFFNPVHRMPLV  461 (714)
T ss_pred             CH-HHhcCCCEEEEcCcccHHHHHHHHHHHH--hhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEecCCCcccCceE
Confidence            44 4579999999999754 33 47777773  122212333 334777 8999988776 3689999988787665444


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      . ++.++.++++.++.+..++..+|+. +.+.+
T Consensus       462 E-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d  493 (714)
T TIGR02437       462 E-VIRGEKSSDETIATVVAYASKMGKTPIVVND  493 (714)
T ss_pred             e-ecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence            4 4567788999999999999999986 66654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.36  E-value=1e-10  Score=112.54  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=112.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 023866            9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~   63 (276)
                      +.+||+|||+|.||..||..+. ++|+    +|+++ |++++.++...           +.             .++.++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  377 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT  377 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence            4578999999999999999887 5899    99999 99987654321           11             233444


Q ss_pred             CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||-|++-+ .+ .+++.++.  ...+...++ +..+++ ++..|++.+. ..+++.+|+-.|...-.-+
T Consensus       378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~--~~~~~~~ilasnTS~l-~i~~la~~~~~p~r~~g~HffnP~~~~~lV  453 (699)
T TIGR02440       378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIE--QECAAHTIFASNTSSL-PIGQIAAAASRPENVIGLHYFSPVEKMPLV  453 (699)
T ss_pred             Ch-HHhccCCEEEEeccccHHHHHHHHHHHH--hhCCCCcEEEeCCCCC-CHHHHHHhcCCcccEEEEecCCccccCceE
Confidence            54 5679999999999754 33 47777773  122212333 344788 8999988775 3689999987777655444


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      . ++.++.++++.++.+..+++.+|+. +++.+
T Consensus       454 E-vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d  485 (699)
T TIGR02440       454 E-VIPHAGTSEQTIATTVALAKKQGKTPIVVAD  485 (699)
T ss_pred             E-EeCCCCCCHHHHHHHHHHHHHcCCeEEEEcc
Confidence            4 4567888999999999999999986 66654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.35  E-value=6.4e-11  Score=114.27  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=114.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c-------------Cceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~   63 (276)
                      .+..+|+|||+|.||..||..+..+|+    +|+++ |++++.+++..+           .             .++.++
T Consensus       333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  407 (737)
T TIGR02441       333 RPVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL  407 (737)
T ss_pred             CcccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence            467899999999999999999999999    99999 999987654221           1             233444


Q ss_pred             CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||-||+-+ .+ .+++.++.  ...+...++ +..+++ ++..|++.+. ..+++..|+-.|...-.-+
T Consensus       408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~--~~~~~~~ilasNTSsl-~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv  483 (737)
T TIGR02441       408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVE--AVVPPHCIIASNTSAL-PIKDIAAVSSRPEKVIGMHYFSPVDKMQLL  483 (737)
T ss_pred             CH-HHhccCCeehhhccccHHHHHHHHHHHH--hhCCCCcEEEEcCCCC-CHHHHHhhcCCccceEEEeccCCcccCceE
Confidence            44 4578999999999754 33 47777773  111112233 334777 8999998876 3689999988787655444


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      . ++.++.++++.++.+..+++.+|+. +++.+
T Consensus       484 E-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d  515 (737)
T TIGR02441       484 E-IITHDGTSKDTLASAVAVGLKQGKVVIVVKD  515 (737)
T ss_pred             E-EeCCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence            4 4557788999999999999999986 66654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.34  E-value=1.2e-10  Score=102.64  Aligned_cols=154  Identities=15%  Similarity=0.067  Sum_probs=101.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhCC--------CCCCCeEEEEeCC-----CHHHHHHHHH--------cC------ceeccC
Q 023866           12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------IG------VKVLSD   64 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g--------~~~~~~V~v~~~r-----~~~~~~~l~~--------~g------~~~~~~   64 (276)
                      ||+|||+|++|++||..|.++|        +    +|++| .|     +++-.+.+.+        .|      +..++|
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d   75 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD   75 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence            6999999999999999999888        7    99999 88     4454555543        12      335567


Q ss_pred             chhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcc--------cHHHHHHHcCCCcEE-EEecCccccc
Q 023866           65 NNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQ--------RWSRWVEWTGHSRFI-RVMPNTPSAV  135 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~--------~~~~l~~~l~~~~vv-~~~p~~~~~~  135 (276)
                      .+++++++|+||++||++.+++++.++.. -+++.+++++-..|+.        -.+.+++.++ .++. -.-|+++.++
T Consensus        76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~-~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Ev  153 (342)
T TIGR03376        76 LVEAAKGADILVFVIPHQFLEGICKQLKG-HVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEV  153 (342)
T ss_pred             HHHHHhcCCEEEEECChHHHHHHHHHHHh-hcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHH
Confidence            78889999999999999999999999831 1111123333335551        1244566664 3433 3458888887


Q ss_pred             cCcc-eE-eecCCCCC--HHHHHHHHHHhhhcCceEEcCCC
Q 023866          136 GEAA-TV-MSLGGTAT--EEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       136 ~~g~-~~-i~~~~~~~--~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      ..+. +. ...+.+.+  .+..+.++.+|+.=-..++.+.|
T Consensus       154 a~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D  194 (342)
T TIGR03376       154 AKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD  194 (342)
T ss_pred             HcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence            6664 22 22222111  67788888888753333555555

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.33  E-value=2.4e-10  Score=98.30  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-----------HcC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g-------------~~~~~   63 (276)
                      +..+||++||+|.||+.||..+...|+    +|+++ |++++.+++..           +.|             +..+.
T Consensus         1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~   75 (307)
T COG1250           1 MEIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTT   75 (307)
T ss_pred             CCccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccC
Confidence            356899999999999999999999889    99999 99977654322           112             11222


Q ss_pred             CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. ..+++||+||-+++-. .+ ++++.++.  ...++..++ +..+++ ++..+++.+. ..+++.+|+-.|.....-+
T Consensus        76 ~~-~~l~~~DlVIEAv~E~levK~~vf~~l~--~~~~~~aIlASNTSsl-~it~ia~~~~rper~iG~HFfNP~~~m~LV  151 (307)
T COG1250          76 DL-AALKDADLVIEAVVEDLELKKQVFAELE--ALAKPDAILASNTSSL-SITELAEALKRPERFIGLHFFNPVPLMPLV  151 (307)
T ss_pred             ch-hHhccCCEEEEeccccHHHHHHHHHHHH--hhcCCCcEEeeccCCC-CHHHHHHHhCCchhEEEEeccCCCCcceeE
Confidence            22 2578999999999744 34 46777662  111112344 334888 9999988775 3689999987777665444


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      . +..+..++++.++.+.++.+.+|+. +...+
T Consensus       152 E-vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D  183 (307)
T COG1250         152 E-VIRGEKTSDETVERVVEFAKKIGKTPVVVKD  183 (307)
T ss_pred             E-EecCCCCCHHHHHHHHHHHHHcCCCCEeecC
Confidence            4 4567778999999999999999976 44444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.31  E-value=1.3e-10  Score=104.32  Aligned_cols=186  Identities=11%  Similarity=0.046  Sum_probs=109.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----------------cCcee--ccCchhhhcCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS   72 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a   72 (276)
                      |||+|||+|.||..+|..|. .||    +|++| |+++++.+.+.+                .+...  +.+..+++.+|
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence            58999999999999997665 588    99999 999999988775                22233  33356778999


Q ss_pred             CEEEEeeCcc-----------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCCCcEEEEecCccccccCcc
Q 023866           73 DVVVFSVKPQ-----------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGHSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        73 DvI~lav~~~-----------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~  139 (276)
                      |+||+|||..           .+++++.++..  ++++..++. .+.+  .+.+.+.+.+.... +..-|.   -...|.
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~--~~~g~lVV~-~STv~pgtt~~l~~~~~~~~-v~~~PE---~l~~G~  147 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE--INPYAVMVI-KSTVPVGFTAAMHKKYRTEN-IIFSPE---FLREGK  147 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh--cCCCCEEEE-eeecCCchHHHHHHHhhcCc-EEECcc---cccCCc
Confidence            9999999743           46677777631  122122221 1333  12345555443222 333232   223332


Q ss_pred             ---------eEeecCCCCCHHHHHHHHHHhhh--cCce-E-EcCCCCchhhhhhcCchHHHHHHH---HHHHHHHHHHcC
Q 023866          140 ---------TVMSLGGTATEEDGELIGKLFGS--VGKI-W-RADEKLFDAITGLSGSGPAYIFLA---IEALADGGVAAG  203 (276)
Q Consensus       140 ---------~~i~~~~~~~~~~~~~v~~ll~~--~G~~-~-~~~e~~~~~~~a~~g~~p~~~~~~---~~~l~~~~~~~G  203 (276)
                               .++.++   +++..+.+.++|..  ++.. . +++.-.-..++.+.  .+.|.+..   ++.+...+.+.|
T Consensus       148 a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~--~N~~~a~~Ia~~NE~a~lae~~G  222 (388)
T PRK15057        148 ALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLF--ANTYLAMRVAYFNELDSYAESLG  222 (388)
T ss_pred             ccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence                     223332   45667778888754  5543 2 34443333333333  24454433   334445567899


Q ss_pred             CCHHHHHHHHH
Q 023866          204 LPRELALGLAS  214 (276)
Q Consensus       204 l~~~~a~~~~~  214 (276)
                      +|.++..+.+.
T Consensus       223 iD~~eV~~a~~  233 (388)
T PRK15057        223 LNTRQIIEGVC  233 (388)
T ss_pred             cCHHHHHHHhc
Confidence            99988876653

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.29  E-value=3.7e-11  Score=115.39  Aligned_cols=184  Identities=11%  Similarity=0.094  Sum_probs=134.8

Q ss_pred             EEEeeCcccHHHHHHHHhhccccccCCcccCC------CCcccH---HHHHHHcCC--CcEEEEecCcccccc-------
Q 023866           75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERP------SGLQRW---SRWVEWTGH--SRFIRVMPNTPSAVG-------  136 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~---~~l~~~l~~--~~vv~~~p~~~~~~~-------  136 (276)
                      ||+|+|+..+.+++.++        .+++.++      .++ ..   +.+.++++.  .+++..||....+..       
T Consensus         1 vila~Pv~~~~~~~~~~--------~~~~~~~~~vtDv~Sv-K~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~   71 (673)
T PRK11861          1 VLLAAPVAQTGPLLARI--------APFLDASTIVTDAGST-KSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALA   71 (673)
T ss_pred             CEEEcCHHHHHHHHHHH--------hhhCCCCcEEEecCcc-cHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhCh
Confidence            69999999999999998        5555443      233 22   444555653  358888887544321       


Q ss_pred             ---Cc-ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 023866          137 ---EA-ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALG  211 (276)
Q Consensus       137 ---~g-~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~  211 (276)
                         +| ..++++.+..+++.++.+.++++.+|.. +.+++++||.++|++++.||+++.   ++++...+.- +.+....
T Consensus        72 ~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~---~l~~~~~~~~-~~~~~~~  147 (673)
T PRK11861         72 DLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSF---ALVEQILGES-DAELKFS  147 (673)
T ss_pred             hHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHH---HHHHHHhhcc-ChhHHHH
Confidence               22 3567777777888999999999999965 889999999999999999998765   3444332222 3455568


Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          212 LASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       212 ~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +..++|+++++++.   .+|.+|.+.+.++.....+.|+.+.+.  .++..+.    +.+.+.++++++
T Consensus       148 ~a~~gfrd~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~  213 (673)
T PRK11861        148 YAAGGFRDFTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA  213 (673)
T ss_pred             hcccchhccccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999975   689999999999988888888887664  5555554    456666666654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.29  E-value=3.6e-10  Score=108.97  Aligned_cols=153  Identities=17%  Similarity=0.106  Sum_probs=112.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 023866            9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~   63 (276)
                      ..+||+|||+|.||..||..+. .+|+    +|+++ |++++.+++..           +.             .+..++
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  382 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT  382 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence            4678999999999999999998 8899    99999 99988654421           11             233444


Q ss_pred             CchhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||-|++-+ . -.+++.++.+  ..++..++ +..+++ ++..|++.+. ..+++.+|+-.|...-.-+
T Consensus       383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~--~~~~~~ilasnTS~l-~i~~la~~~~~p~r~ig~Hff~P~~~~~lV  458 (708)
T PRK11154        383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQ--NCAPHTIFASNTSSL-PIGQIAAAAARPEQVIGLHYFSPVEKMPLV  458 (708)
T ss_pred             Ch-HHhccCCEEeecccccHHHHHHHHHHHHh--hCCCCcEEEECCCCC-CHHHHHHhcCcccceEEEecCCccccCceE
Confidence            54 5679999999999754 3 3477777731  11112333 334777 8999988776 3689999988777655444


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      . +..++.++++..+.+..+++.+|+. +.+.+
T Consensus       459 E-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d  490 (708)
T PRK11154        459 E-VIPHAKTSAETIATTVALAKKQGKTPIVVRD  490 (708)
T ss_pred             E-EECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence            4 4567889999999999999999985 66644

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=99.23  E-value=7.8e-11  Score=92.14  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=81.5

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc--------------hhhhcCCCEEEEe
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS   78 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDvI~la   78 (276)
                      |+|+|+|.||..+|..|.++|+    +|+++ .|++ +.+.+++.|+.+....              .+..+.+|+||+|
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~   74 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA   74 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred             CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence            7899999999999999999999    99999 8988 8888887666543221              1346789999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEecC
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVMPN  130 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~p~  130 (276)
                      ||..++++++..+        ++++.+.       +|+...+.+++.++..+++..+..
T Consensus        75 vKa~~~~~~l~~l--------~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~  125 (151)
T PF02558_consen   75 VKAYQLEQALQSL--------KPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGVTT  125 (151)
T ss_dssp             SSGGGHHHHHHHH--------CTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEEEE
T ss_pred             ecccchHHHHHHH--------hhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEEEe
Confidence            9999999999998        5555543       888556788888875566666544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.20  E-value=4.4e-09  Score=88.68  Aligned_cols=220  Identities=17%  Similarity=0.150  Sum_probs=143.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      ..+.+||+|||+|.=|.+-+.+|+++|+    +|++- -|.. ...+.+.+.|..+. +..|+++.+|+|++-+|+..-.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~   88 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQK   88 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHH
Confidence            4567899999999999999999999999    88876 4433 33666777898875 6889999999999999999988


Q ss_pred             HHHH-HHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceE-eecCCCC
Q 023866           86 AAVI-TEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATV-MSLGGTA  148 (276)
Q Consensus        86 ~vl~-~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~-i~~~~~~  148 (276)
                      +|++ ++        .|.+..+      -|. ++..- ...|  +..++=+-|-.|...       |.|+.. +......
T Consensus        89 ~vy~~~I--------~p~Lk~G~aL~FaHGf-Nihf~-~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~  158 (338)
T COG0059          89 EVYEKEI--------APNLKEGAALGFAHGF-NIHFG-LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDA  158 (338)
T ss_pred             HHHHHHh--------hhhhcCCceEEecccc-ceecc-eecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCC
Confidence            9988 66        6777655      233 22111 1112  345555557666532       455543 3333445


Q ss_pred             CHHHHHHHHHHhhhcCc--e-EEc----CC---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023866          149 TEEDGELIGKLFGSVGK--I-WRA----DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL  218 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~--~-~~~----~e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~  218 (276)
                      +....+....+...+|.  . +..    .|   +.+-.-+.++|..    ..++.+-.|..++.|.+++.|+.-+..-+.
T Consensus       159 sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl----~~li~agfetLvEaGy~PE~AyfE~lhE~k  234 (338)
T COG0059         159 SGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL----QALIKAGFETLVEAGYQPELAYFECLHELK  234 (338)
T ss_pred             CchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            66788888999999982  2 321    12   3344445555432    233444456667899999998776666555


Q ss_pred             HHHHHHHhcC--------CChHHHHHhcCCCCchHH
Q 023866          219 GAASMVTKSG--------KHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       219 g~~~~~~~~~--------~~~~~l~~~v~sp~g~t~  246 (276)
                      -...++.+.|        ++..++-+-+..|.=.+.
T Consensus       235 lIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~  270 (338)
T COG0059         235 LIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDA  270 (338)
T ss_pred             HHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecH
Confidence            5555554322        455666655655654443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.15  E-value=5.3e-09  Score=93.56  Aligned_cols=203  Identities=16%  Similarity=0.111  Sum_probs=133.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC------HHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|+|||+|.+|.+.|.+|...|+    +|++- -|.      .+..+.+.+.|..+ .+..++++.||+|++.+|+
T Consensus        34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPD  107 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPD  107 (487)
T ss_pred             hCCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCCh
Confidence            457899999999999999999999999    88855 333      34555666678766 5688999999999999998


Q ss_pred             ccHHHHHHHHhhccccccCCcccCC------CCcccHHHHHHHcC-CCcEEEEecCccccc-------cCcceE-eecC-
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG-HSRFIRVMPNTPSAV-------GEAATV-MSLG-  145 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~-------~~g~~~-i~~~-  145 (276)
                      ..-..+..++        .+.+.++      -|- ++..-.-..| +..|+-+-|-.|...       |.|+.. +... 
T Consensus       108 t~q~~v~~~i--------~p~LK~Ga~L~fsHGF-ni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~  178 (487)
T PRK05225        108 KQHSDVVRAV--------QPLMKQGAALGYSHGF-NIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHP  178 (487)
T ss_pred             HHHHHHHHHH--------HhhCCCCCEEEecCCc-eeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEee
Confidence            8655666666        5555544      222 2211111112 456666667655431       455533 3223 


Q ss_pred             -CCCCHHHHHHHHHHhhhcCce---EEcC----C---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866          146 -GTATEEDGELIGKLFGSVGKI---WRAD----E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       146 -~~~~~~~~~~v~~ll~~~G~~---~~~~----e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                       ...+....+.......++|..   +..+    |   +.+-.-+.++|..    .....+..+..++.|.+++.|+..+.
T Consensus       179 ~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~----~~~~~~~Fe~lve~G~~pe~A~k~~~  254 (487)
T PRK05225        179 ENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGML----QAGSLLCFDKLVAEGTDPAYAEKLIQ  254 (487)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence             345666788888898999843   2211    2   2333344454432    22344555667789999999999888


Q ss_pred             HHHHHHHHHHHhcCC
Q 023866          215 QTVLGAASMVTKSGK  229 (276)
Q Consensus       215 ~~~~g~~~~~~~~~~  229 (276)
                      .++...++++.+.|.
T Consensus       255 ~~~E~I~e~i~e~GI  269 (487)
T PRK05225        255 FGWETITEALKQGGI  269 (487)
T ss_pred             hhHHHHHHHHHhccH
Confidence            888888887765553

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.14  E-value=2.8e-10  Score=88.05  Aligned_cols=140  Identities=17%  Similarity=0.231  Sum_probs=86.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +.++|+|||+|..|.+.+.+|+++|+    +|.+. .|..+ ..+..++.|..+. +..|+++++|+|++.+|+....++
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v   76 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV   76 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence            46899999999999999999999999    99988 67655 6677777898875 678899999999999999988888


Q ss_pred             H-HHHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceEee-cCCCCCH
Q 023866           88 V-ITEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATE  150 (276)
Q Consensus        88 l-~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~i~-~~~~~~~  150 (276)
                      + +++        .|.+.++      -|. ++. .....|  +..++-+.|..|...       |.|+..++ .....+.
T Consensus        77 y~~~I--------~p~l~~G~~L~fahGf-ni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg  146 (165)
T PF07991_consen   77 YEEEI--------APNLKPGATLVFAHGF-NIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASG  146 (165)
T ss_dssp             HHHHH--------HHHS-TT-EEEESSSH-HHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS
T ss_pred             HHHHH--------HhhCCCCCEEEeCCcc-hhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCc
Confidence            8 555        5566554      233 221 111111  345666667666432       44543322 2223344


Q ss_pred             HHHHHHHHHhhhcC
Q 023866          151 EDGELIGKLFGSVG  164 (276)
Q Consensus       151 ~~~~~v~~ll~~~G  164 (276)
                      ...+....+...+|
T Consensus       147 ~A~~~ala~A~~iG  160 (165)
T PF07991_consen  147 KAKELALAYAKAIG  160 (165)
T ss_dssp             -HHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhC
Confidence            55666666666665

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.06  E-value=7.4e-10  Score=89.40  Aligned_cols=160  Identities=19%  Similarity=0.152  Sum_probs=110.6

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c------------
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------   57 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------   57 (276)
                      |++..+..+++.|+|||+|.||+.||+--..+|+    +|+++ |++++.+.+..+           .            
T Consensus         2 ~s~s~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~   76 (298)
T KOG2304|consen    2 MSASANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEF   76 (298)
T ss_pred             cccccccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHH
Confidence            5666677788899999999999999999999999    99999 999887655432           0            


Q ss_pred             ------CceeccCchhhhcCCCEEEEeeC-cccH-HHHHHHHhhccccccCCccc-CCCCcccHHHHHHHcC-CCcEEEE
Q 023866           58 ------GVKVLSDNNAVVEYSDVVVFSVK-PQVD-KAAVITEEAFGFCCCRSEIE-RPSGLQRWSRWVEWTG-HSRFIRV  127 (276)
Q Consensus        58 ------g~~~~~~~~~~~~~aDvI~lav~-~~~~-~~vl~~~~~~~~~~~~~~l~-~~~g~~~~~~l~~~l~-~~~vv~~  127 (276)
                            .+..+++..+++.++|+||-++- .-++ +.++.++.  +.++...++. ..+.+ .+.++...+. ..++.+.
T Consensus        77 v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~--~~ak~~~il~tNTSSl-~lt~ia~~~~~~srf~Gl  153 (298)
T KOG2304|consen   77 VDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLD--KIAKSSTILATNTSSL-SLTDIASATQRPSRFAGL  153 (298)
T ss_pred             HHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH--hhcccceEEeecccce-eHHHHHhhccChhhhcee
Confidence                  12234566778888999998863 2233 46666663  2222123332 23556 7777777665 3567777


Q ss_pred             ecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEc
Q 023866          128 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA  169 (276)
Q Consensus       128 ~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~  169 (276)
                      |-..|..+-+-+.+ ..++..+++.+..+..+-+.+|+..+.
T Consensus       154 HFfNPvPvMKLvEV-ir~~~TS~eTf~~l~~f~k~~gKttVa  194 (298)
T KOG2304|consen  154 HFFNPVPVMKLVEV-IRTDDTSDETFNALVDFGKAVGKTTVA  194 (298)
T ss_pred             eccCCchhHHHhhh-hcCCCCCHHHHHHHHHHHHHhCCCcee
Confidence            75556555443443 345678899999999999999987444

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=3e-08  Score=86.44  Aligned_cols=185  Identities=15%  Similarity=0.145  Sum_probs=116.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhh---hcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDvI~lav~   80 (276)
                      ....||+||+|.||+.++.++.++||    .|.+| ||++++.+.+.+.     .+..+.+.+|.   ++..--|+++|+
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk   76 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK   76 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence            45689999999999999999999999    99999 9999999988762     34445566655   457889999998


Q ss_pred             cc-cHHHHHHHHhhccccccCCcccCC-----CCc--c--cHHHHHHHcC-CCcEEEEecCccc-cccCcceEeecCCCC
Q 023866           81 PQ-VDKAAVITEEAFGFCCCRSEIERP-----SGL--Q--RWSRWVEWTG-HSRFIRVMPNTPS-AVGEAATVMSLGGTA  148 (276)
Q Consensus        81 ~~-~~~~vl~~~~~~~~~~~~~~l~~~-----~g~--~--~~~~l~~~l~-~~~vv~~~p~~~~-~~~~g~~~i~~~~~~  148 (276)
                      .- .+..+++++        .|++..+     .|-  .  +....+++.. +..++.+--.... -...|..++..   .
T Consensus        77 AG~~VD~~I~~L--------~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpG---G  145 (473)
T COG0362          77 AGTPVDAVIEQL--------LPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPG---G  145 (473)
T ss_pred             cCCcHHHHHHHH--------HhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCC---C
Confidence            74 477888888        6777553     333  0  1223333322 3455553211111 11235555543   4


Q ss_pred             CHHHHHHHHHHhhhcC------ce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH----HcCCCHHHHHH
Q 023866          149 TEEDGELIGKLFGSVG------KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGV----AAGLPRELALG  211 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G------~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~----~~Gl~~~~a~~  211 (276)
                      +++..+.+.++|..+.      .| .+++++---.+..+.-.|--  |.-++.+.|+..    -.|++.++.-+
T Consensus       146 ~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIE--YgDMQlIaE~Y~ilk~~lgls~~ei~~  217 (473)
T COG0362         146 QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIE--YGDMQLIAEAYDILKDGLGLSAEEIAE  217 (473)
T ss_pred             CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCch--HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            8999999999998873      23 66777532222222211111  233445555431    36777665544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.99  E-value=3.4e-08  Score=90.71  Aligned_cols=195  Identities=14%  Similarity=0.072  Sum_probs=109.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHHc-------------------CceeccCchhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV   68 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~   68 (276)
                      +|||+|||+|.+|..+|..|.++|  +    +|+++ |+++++.+.+++-                   .+..+++..++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~   75 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH   75 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence            589999999999999999999885  6    79999 9999999886531                   13345556677


Q ss_pred             hcCCCEEEEeeC-cc--------------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcC----CCc-EEE
Q 023866           69 VEYSDVVVFSVK-PQ--------------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTG----HSR-FIR  126 (276)
Q Consensus        69 ~~~aDvI~lav~-~~--------------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~----~~~-vv~  126 (276)
                      +++||++|+||| |.              .+.+++.++.. .++++.-++.. +.+  ++.+.+...+.    +.. .+.
T Consensus        76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~-~l~~~~lVv~~-STvp~Gtt~~~~~~l~~~~~g~~f~v~  153 (473)
T PLN02353         76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGINFQIL  153 (473)
T ss_pred             HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHh-hCCCCcEEEEe-CCCCCChHHHHHHHHHhhCCCCCeEEE
Confidence            899999999995 22              35677777721 11111111111 222  12344444332    111 122


Q ss_pred             EecCcc-----ccccCcc-eEeecCC--CCCHHHHHHHHHHhhhcCc--eEEcCCCCchhhhhhcCchHHHH---HHHHH
Q 023866          127 VMPNTP-----SAVGEAA-TVMSLGG--TATEEDGELIGKLFGSVGK--IWRADEKLFDAITGLSGSGPAYI---FLAIE  193 (276)
Q Consensus       127 ~~p~~~-----~~~~~g~-~~i~~~~--~~~~~~~~~v~~ll~~~G~--~~~~~e~~~~~~~a~~g~~p~~~---~~~~~  193 (276)
                      ..|.--     ..--... -++.++.  ...++..+.+..+++.+-.  .+....-.-..++.+.  -++|.   -.+++
T Consensus       154 ~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~--eN~~ra~~Iaf~N  231 (473)
T PLN02353        154 SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLA--ANAFLAQRISSVN  231 (473)
T ss_pred             ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            333211     1000111 1222332  1114467888889888742  3333322222233322  13343   24567


Q ss_pred             HHHHHHHHcCCCHHHHHHHH
Q 023866          194 ALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       194 ~l~~~~~~~Gl~~~~a~~~~  213 (276)
                      .|...+.+.|+|..+..+.+
T Consensus       232 Ela~lce~~giD~~eV~~~~  251 (473)
T PLN02353        232 AMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHhCCCHHHHHHHh
Confidence            77777889999988766554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.98  E-value=6.5e-08  Score=84.65  Aligned_cols=175  Identities=13%  Similarity=0.053  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-------HHH-----------HHHc-------------CceeccC--chh
Q 023866           21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA-----------FESI-------------GVKVLSD--NNA   67 (276)
Q Consensus        21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-------~~~-----------l~~~-------------g~~~~~~--~~~   67 (276)
                      ||..||..+..+|+    +|+++ |++++.       +++           +.+.             .++.+.+  ..+
T Consensus         1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   75 (314)
T PRK08269          1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD   75 (314)
T ss_pred             CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence            89999999999999    99999 999842       111           1111             2333333  457


Q ss_pred             hhcCCCEEEEeeCcc-cHH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEee
Q 023866           68 VVEYSDVVVFSVKPQ-VDK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMS  143 (276)
Q Consensus        68 ~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~  143 (276)
                      ++++||+||.||+.. +++ .++.++.+ ...+ ..++ +..+++ ++..|.+.+. ..+++.+|+-.|.....-+. +.
T Consensus        76 a~~~aD~ViEav~E~~~~K~~~f~~l~~-~~~~-~~ilaSntS~~-~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvE-Vv  151 (314)
T PRK08269         76 ALADADLVFEAVPEVLDAKREALRWLGR-HVDA-DAIIASTTSTF-LVTDLQRHVAHPERFLNAHWLNPAYLMPLVE-VS  151 (314)
T ss_pred             HhccCCEEEECCcCCHHHHHHHHHHHHh-hCCC-CcEEEEccccC-CHHHHHhhcCCcccEEEEecCCccccCceEE-Ee
Confidence            789999999999754 444 45555521 1111 2233 333667 8888888775 35788888877765544333 45


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 023866          144 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLAS  214 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~  214 (276)
                      .++.++++.++.+.++++.+|+. +++++.. . +        .....+...+.|+   +.+.|.++++..+++.
T Consensus       152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-f--------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~  216 (314)
T PRK08269        152 PSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-Y--------IVPRIQALAMNEAARMVEEGVASAEDIDKAIR  216 (314)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-c--------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67788999999999999999976 7776531 1 0        0111112222222   3456678887777665

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.95  E-value=4.1e-07  Score=79.95  Aligned_cols=237  Identities=16%  Similarity=0.188  Sum_probs=138.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~   70 (276)
                      |||.|||.|-+|...+..|.+.||    +|+.+ |.++++.+.+.+                   .| +..++|..++++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~   75 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK   75 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence            799999999999999999999999    99999 999999887763                   12 556778888999


Q ss_pred             CCCEEEEeeC--cc--------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCC---CcEEEEecCccccc
Q 023866           71 YSDVVVFSVK--PQ--------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGH---SRFIRVMPNTPSAV  135 (276)
Q Consensus        71 ~aDvI~lav~--~~--------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~---~~vv~~~p~~~~~~  135 (276)
                      ++|++|+||+  +.        .++++.+++... + +...++-.++++  ++.+.+++.+..   .+-.....| |.-.
T Consensus        76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~-~-~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N-PEFL  152 (414)
T COG1004          76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI-L-DGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN-PEFL  152 (414)
T ss_pred             cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh-c-CCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC-hHHh
Confidence            9999999994  21        356667776210 0 001122122444  123555554431   110111112 3323


Q ss_pred             cCcce--------EeecCCCCCHHHHHHHHHHhhhc---CceEEcCCCCchhhhhhcCchHHHHH---HHHHHHHHHHHH
Q 023866          136 GEAAT--------VMSLGGTATEEDGELIGKLFGSV---GKIWRADEKLFDAITGLSGSGPAYIF---LAIEALADGGVA  201 (276)
Q Consensus       136 ~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~---G~~~~~~e~~~~~~~a~~g~~p~~~~---~~~~~l~~~~~~  201 (276)
                      ++|..        -++.|. .++.+.+.+.+++..+   ...+....-.-..+..+.  .++|++   .|++.+.+.+.+
T Consensus       153 REG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKya--aNafLAtKIsFiNEia~ice~  229 (414)
T COG1004         153 REGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYA--ANAFLATKISFINEIANICEK  229 (414)
T ss_pred             cCcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            44421        122232 1333567777777665   333443332222233332  256665   367778888889


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCC----Cch-----HHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 023866          202 AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP----GGT-----TIAGIHELEKSGFRGILMNAVVAAAKRS  272 (276)
Q Consensus       202 ~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp----~g~-----t~~~l~~l~~~~~~~~~~~a~~~~~~r~  272 (276)
                      .|.|-++..+-+..--+               +-..+..|    ||.     |.+-+...++.+....+.+|+.+.-++-
T Consensus       230 ~g~D~~~V~~gIGlD~R---------------IG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~q  294 (414)
T COG1004         230 VGADVKQVAEGIGLDPR---------------IGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERR  294 (414)
T ss_pred             hCCCHHHHHHHcCCCch---------------hhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            99987765543321111               11222222    222     6666777888888888888888776654


Q ss_pred             h
Q 023866          273 R  273 (276)
Q Consensus       273 ~  273 (276)
                      +
T Consensus       295 k  295 (414)
T COG1004         295 K  295 (414)
T ss_pred             H
Confidence            3

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.93  E-value=5.4e-09  Score=89.38  Aligned_cols=80  Identities=21%  Similarity=0.292  Sum_probs=65.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +|||||||+|.||..+++.|.+.+.  .-+ +.++ ||++++.+.+.+ .+...+.+.++++.++|+|++|++++.+.++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~--~~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~   77 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRI--NAELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEV   77 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCC--CeEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHH
Confidence            4799999999999999999987631  115 4467 999999888766 5777777888888899999999999988888


Q ss_pred             HHHHh
Q 023866           88 VITEE   92 (276)
Q Consensus        88 l~~~~   92 (276)
                      ..+..
T Consensus        78 ~~~al   82 (265)
T PRK13304         78 VPKSL   82 (265)
T ss_pred             HHHHH
Confidence            77663

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.93  E-value=6.5e-09  Score=89.08  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      |+.+||||||+|.||..+++.|.+.  ++    ++. +| +|++++.+.+.+ .|. ..+.+.++++.++|+|++|+|++
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~   78 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS   78 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence            6679999999999999999999863  55    776 66 999999887765 564 45677888889999999999998


Q ss_pred             cHHHHHHHHh
Q 023866           83 VDKAAVITEE   92 (276)
Q Consensus        83 ~~~~vl~~~~   92 (276)
                      ...++.....
T Consensus        79 ~h~e~~~~aL   88 (271)
T PRK13302         79 VLRAIVEPVL   88 (271)
T ss_pred             HHHHHHHHHH
Confidence            8888776653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.91  E-value=3.6e-09  Score=85.44  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=48.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------------cCceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~   70 (276)
                      |||+|||+|.+|..+|..|.++||    +|+.+ |.++++.+.+.+                    ..+..+++..+++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~   75 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK   75 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence            799999999999999999999999    99999 999999887763                    12345566777789


Q ss_pred             CCCEEEEeeC
Q 023866           71 YSDVVVFSVK   80 (276)
Q Consensus        71 ~aDvI~lav~   80 (276)
                      ++|++|+|||
T Consensus        76 ~adv~~I~Vp   85 (185)
T PF03721_consen   76 DADVVFICVP   85 (185)
T ss_dssp             H-SEEEE---
T ss_pred             ccceEEEecC
Confidence            9999999996

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.88  E-value=2.3e-08  Score=74.88  Aligned_cols=101  Identities=18%  Similarity=0.288  Sum_probs=74.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCcccHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~~~~   86 (276)
                      +||||||+|.+|......+.+...  ..++. ++ |+++++.+.+.+ .|+..++|..++++  +.|+|++++|+....+
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~   77 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE   77 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence            589999999999999999887732  12555 56 999999988765 88888889888887  7999999999987777


Q ss_pred             HHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      ++....+.|    .+++..+ -+. +.++++++.
T Consensus        78 ~~~~~l~~g----~~v~~EKP~~~-~~~~~~~l~  106 (120)
T PF01408_consen   78 IAKKALEAG----KHVLVEKPLAL-TLEEAEELV  106 (120)
T ss_dssp             HHHHHHHTT----SEEEEESSSSS-SHHHHHHHH
T ss_pred             HHHHHHHcC----CEEEEEcCCcC-CHHHHHHHH
Confidence            766653333    4555443 344 555555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.88  E-value=6.9e-07  Score=77.43  Aligned_cols=233  Identities=15%  Similarity=0.139  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--------------cCchhhhcCCCEEEEeeCcccHHH
Q 023866           21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ||+.++..|.++|+    +|+++ +|+ ++.+.+++.|+.+.              +++++ ...+|+||+|||.+++.+
T Consensus         2 iG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~   74 (293)
T TIGR00745         2 VGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEE   74 (293)
T ss_pred             chHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHH
Confidence            79999999999999    99999 997 67777776554321              12223 568999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccc---------cccCcceEeecCCCCCHHHHHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPS---------AVGEAATVMSLGGTATEEDGELIG  157 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~---------~~~~g~~~i~~~~~~~~~~~~~v~  157 (276)
                      +++.+.. -+.++..++.-.+|+...+.+.+.++..+++......+.         ..+.+...+...++ +.+..+.+.
T Consensus        75 ~l~~l~~-~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~  152 (293)
T TIGR00745        75 AAALLLP-LIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA  152 (293)
T ss_pred             HHHHhHh-hcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence            9988821 011112223333888556778887774445443332221         11222222222211 225567788


Q ss_pred             HHhhhcCceEEcCCC-------------CchhhhhhcCchHH----------HHHHHHHHHHHHHHHcCCCH--HHHHHH
Q 023866          158 KLFGSVGKIWRADEK-------------LFDAITGLSGSGPA----------YIFLAIEALADGGVAAGLPR--ELALGL  212 (276)
Q Consensus       158 ~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~----------~~~~~~~~l~~~~~~~Gl~~--~~a~~~  212 (276)
                      ++|+..|..+...++             -++.++++.++...          .+..++.-....+.+.|++.  +...+.
T Consensus       153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~  232 (293)
T TIGR00745       153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEEL  232 (293)
T ss_pred             HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            888888855444443             24556666654211          11222223333356778654  333333


Q ss_pred             HHHHHHHHHHHHHhcCC-ChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHH
Q 023866          213 ASQTVLGAASMVTKSGK-HPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAK  270 (276)
Q Consensus       213 ~~~~~~g~~~~~~~~~~-~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~  270 (276)
                      +....       ..... .+.++.|.. ..+-+-...     ++.-++.|++....+.+...++
T Consensus       233 ~~~~~-------~~~~~~~sSm~~D~~-~gr~tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~  288 (293)
T TIGR00745       233 VRAVI-------RMTAENTSSMLQDLL-RGRRTEIDAINGAVVRLAEKLGIDAPVNRTLYALLK  288 (293)
T ss_pred             HHHHH-------hcCCCCCChHHHHHH-cCCcchHHHhccHHHHHHHHcCCCCChHHHHHHHHH
Confidence            32221       11111 245554433 322222233     3334556777777776665543

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.79  E-value=3.1e-06  Score=69.96  Aligned_cols=208  Identities=20%  Similarity=0.158  Sum_probs=126.4

Q ss_pred             CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceeccC
Q 023866           10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSD   64 (276)
Q Consensus        10 ~~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~   64 (276)
                      +|||++.|+||-                    |..||-.+.++||    +|.+. +.|.+     .-+++.+.|+.+++|
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d   75 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD   75 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence            479999999973                    7789999999999    99999 77653     345666689999999


Q ss_pred             chhhhcCCCEEEEeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccH----HHHHHHcC-CCcEEEEecCccccc---
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW----SRWVEWTG-HSRFIRVMPNTPSAV---  135 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~----~~l~~~l~-~~~vv~~~p~~~~~~---  135 (276)
                      ..++++.+++.+|.+|-. ..-.+..+|..  -.+...++...-.+ +.    ..|+..+. ...-++.++.+|+.+   
T Consensus        76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~--hvpEgAVicnTCT~-sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGt  152 (340)
T COG4007          76 DAEAAEHGEIHVLFTPFGKATFGIAREILE--HVPEGAVICNTCTV-SPVVLYYSLEGELRTKREDVGVSSMHPAGVPGT  152 (340)
T ss_pred             chhhhhcceEEEEecccchhhHHHHHHHHh--hCcCCcEecccccC-chhHHHHHhhhhhcCchhhcCccccCCCCCCCC
Confidence            999999999999999865 55566666510  00002223222223 22    22333332 112233344444333   


Q ss_pred             -cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH----HHcCC
Q 023866          136 -GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGG----VAAGL  204 (276)
Q Consensus       136 -~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~----~~~Gl  204 (276)
                       .++...+..-     .-.++++.+++.++.++.|+. +++..+.   ..++.-.+.......++++.+..    +-.|-
T Consensus       153 p~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv---~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~A  229 (340)
T COG4007         153 PQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADV---VSAVADMGVLVTAVALSGVLDYYYVGTQIIGA  229 (340)
T ss_pred             CCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             2344433311     114688999999999999987 5555433   22322222233344455555543    23677


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhcC
Q 023866          205 PRELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       205 ~~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      |++...+-+..++.-.+.+...+|
T Consensus       230 P~eMIekQilmtLqTmAsLvetsG  253 (340)
T COG4007         230 PKEMIEKQILMTLQTMASLVETSG  253 (340)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcc
Confidence            777776666667766677766554

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.78  E-value=3.2e-08  Score=77.58  Aligned_cols=72  Identities=18%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH-cCc----eeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+.++|+|||+|.||.+++..|.+.| +    +|+++ +|++++.+.+.+ .+.    ....+..++++++|+||+|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~   91 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV   91 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence            35689999999999999999999885 5    89999 999998887665 342    1334566668899999999998


Q ss_pred             ccH
Q 023866           82 QVD   84 (276)
Q Consensus        82 ~~~   84 (276)
                      ...
T Consensus        92 ~~~   94 (155)
T cd01065          92 GMK   94 (155)
T ss_pred             CCC
Confidence            753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.68  E-value=2.2e-07  Score=81.90  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-HHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-DKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~~~   86 (276)
                      ...++|||||+|+||+++|+.|...|+    +|++| ||+++.....    .....+..+++++||+|++++|... ...
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~  214 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYH  214 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence            456899999999999999999999998    99999 9987654321    2234567889999999999998653 444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       215 li  216 (330)
T PRK12480        215 LF  216 (330)
T ss_pred             HH
Confidence            43

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.65  E-value=5.4e-07  Score=73.79  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhh-cCCCEEEEeeCcc-c
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQ-V   83 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDvI~lav~~~-~   83 (276)
                      .+..++|+|+|+|+||..+++.|.+.|+    +|+++ |+++++++.+.+ .|....+. .++. .+||+++.|.... .
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I   98 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI   98 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc
Confidence            4566899999999999999999999999    99999 999998888876 47665433 4444 3799999775443 3


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..+.+.++
T Consensus        99 ~~~~~~~l  106 (200)
T cd01075          99 NDDTIPQL  106 (200)
T ss_pred             CHHHHHHc
Confidence            45566666

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN03139 formate dehydrogenase; Provisional

Probab=98.64  E-value=2e-07  Score=83.40  Aligned_cols=108  Identities=13%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~   86 (276)
                      ...++|||||+|+||..+++.|...|.    +|.+| ||+....+...+.|+....+..+++.+||+|++++|. ...+.
T Consensus       197 L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~  271 (386)
T PLN03139        197 LEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG  271 (386)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            457899999999999999999999898    99998 9886444444456776666888999999999999984 34555


Q ss_pred             HHHHHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866           87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG  120 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~  120 (276)
                      ++..-.-...+++.-+++.. .++...+.|.+.+.
T Consensus       272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  306 (386)
T PLN03139        272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS  306 (386)
T ss_pred             HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence            55321000111112222222 34435566766665

>PRK07574 formate dehydrogenase; Provisional

Probab=98.57  E-value=1.6e-07  Score=84.02  Aligned_cols=77  Identities=14%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+.+++.|...|.    +|.+| ||++...+.....|+....+.+++++.||+|++++|-. ..+.
T Consensus       190 L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  264 (385)
T PRK07574        190 LEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH  264 (385)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence            456899999999999999999999998    99999 99864433334467765668899999999999999843 4555


Q ss_pred             HHH
Q 023866           87 AVI   89 (276)
Q Consensus        87 vl~   89 (276)
                      ++.
T Consensus       265 li~  267 (385)
T PRK07574        265 LFD  267 (385)
T ss_pred             HhC
Confidence            553

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.56  E-value=2.4e-07  Score=74.52  Aligned_cols=68  Identities=18%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|+.+++.+..-|.    +|++| +|+..........+... .+.+++++.||+|++++|-
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~pl  101 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPL  101 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSS
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcc
Confidence            357899999999999999999999998    99999 99987665455667744 4788999999999999983

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.54  E-value=4.4e-07  Score=79.87  Aligned_cols=71  Identities=23%  Similarity=0.369  Sum_probs=58.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC--ceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +..++||||+|.||...+..+...  .+..+|++| +|++++++.+.+    .|  +..+.++.+++++||+|++|++..
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRV--FDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence            457899999999999988887653  245689999 999999877654    45  456788999999999999999754

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.54  E-value=3.6e-07  Score=80.07  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHHc----C--ceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+|+|||+|.||..++..+.. .+   ..+|++| +|++++.+.+.+.    |  +..+.+..+++.+||+|+.|++.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~---~~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s  199 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRP---IKQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS  199 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCC---CCEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence            45799999999999999987665 23   2489999 9999998887762    4  55667788889999999888875


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus       200 ~  200 (314)
T PRK06141        200 T  200 (314)
T ss_pred             C
Confidence            4

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.52  E-value=2.4e-07  Score=71.01  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c---Cce--eccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVK--VLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~~--~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+..++.|||+|.||++++..|.+.|.   .+|+++ +|+.++++.+.+ .   .+.  ..++..+...++|+||.|++.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS   85 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence            357899999999999999999999987   369999 999999998876 3   222  234555667899999999975


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus        86 ~   86 (135)
T PF01488_consen   86 G   86 (135)
T ss_dssp             T
T ss_pred             C
Confidence            4

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.51  E-value=6.5e-07  Score=72.63  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=64.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      ++||+||||.+|..+...+ +.|-.+-+-+.+| ||+.+++..+.+ .+....++.++.+...|+++-|-.++++++...
T Consensus         1 l~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~   78 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELV-RDGRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP   78 (255)
T ss_pred             CeEEEEeccHHHHHHHHHH-hcCCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence            6899999999999998854 5452222345666 999999998877 555445778888899999999999999999888


Q ss_pred             HHhh
Q 023866           90 TEEA   93 (276)
Q Consensus        90 ~~~~   93 (276)
                      ++.+
T Consensus        79 ~~L~   82 (255)
T COG1712          79 KILK   82 (255)
T ss_pred             HHHh
Confidence            8754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.49  E-value=4.1e-07  Score=78.60  Aligned_cols=72  Identities=15%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhcCCCEEEEeeCccc
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ....++++|||+|.||.++++.|...|.    +|+++ +|++++.+.+.+.|....  .+..+.+.++|+||.++|...
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i  221 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV  221 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH
Confidence            3456899999999999999999999998    99999 999988777766665432  344677889999999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.49  E-value=4.4e-07  Score=80.16  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+.+|+.|...|.    +|.+| +|+++.. .....+... .+..+++++||+|++++|.. ..+.
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~  220 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYH  220 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhh
Confidence            356899999999999999999999998    99999 9986543 223345543 46888999999999999853 3444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       221 ~i  222 (333)
T PRK13243        221 MI  222 (333)
T ss_pred             cc
Confidence            44

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.48  E-value=5.4e-07  Score=76.74  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=71.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ++||+|||+ |.||..++..+.+. ++    ++...+++++++.+.....++..+.+..++++++|+|+.+++|....++
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~   76 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLEN   76 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHH
Confidence            479999999 99999999888753 44    6664338888765544335666667777877789999999999887777


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEW  118 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~  118 (276)
                      +....+.|    .+++....|. +.+++.++
T Consensus        77 ~~~al~~G----~~vvigttG~-s~~~~~~l  102 (257)
T PRK00048         77 LEFALEHG----KPLVIGTTGF-TEEQLAEL  102 (257)
T ss_pred             HHHHHHcC----CCEEEECCCC-CHHHHHHH
Confidence            76653333    5566545677 66555443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.46  E-value=2.8e-07  Score=69.57  Aligned_cols=97  Identities=22%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHH-H----HHHH---HcCceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-R----DAFE---SIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~-~----~~l~---~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      |||+++|+ |+||+.+++.+.+ .++    ++...++|+++. .    -.+.   ..|+.+.++.+++.+.+|+||-.+.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~   76 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN   76 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence            68999999 9999999999988 566    766444887621 1    1111   2467778888999989999999998


Q ss_pred             cccHHHHHHHHhhccccccCCcccCCCCcccHHHHH
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWV  116 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~  116 (276)
                      |+.+.+.++...+.+    .+++....|. +.++++
T Consensus        77 p~~~~~~~~~~~~~g----~~~ViGTTG~-~~~~~~  107 (124)
T PF01113_consen   77 PDAVYDNLEYALKHG----VPLVIGTTGF-SDEQID  107 (124)
T ss_dssp             HHHHHHHHHHHHHHT-----EEEEE-SSS-HHHHHH
T ss_pred             hHHhHHHHHHHHhCC----CCEEEECCCC-CHHHHH
Confidence            888777776653322    5677766888 654443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=2.1e-05  Score=69.24  Aligned_cols=184  Identities=18%  Similarity=0.198  Sum_probs=106.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~   70 (276)
                      ++||+||+|-+|.++|..+.++|+    +|..+ |.++.+.+.+..                   .| ++.+++..+ ++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~   83 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK   83 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence            899999999999999999999999    99999 999998877653                   12 445556655 46


Q ss_pred             CCCEEEEeeCcc----------cHHHHHHHHhhccccccCCcccCC----------CCcccHHHHHH-HcC---C----C
Q 023866           71 YSDVVVFSVKPQ----------VDKAAVITEEAFGFCCCRSEIERP----------SGLQRWSRWVE-WTG---H----S  122 (276)
Q Consensus        71 ~aDvI~lav~~~----------~~~~vl~~~~~~~~~~~~~~l~~~----------~g~~~~~~l~~-~l~---~----~  122 (276)
                      .||++++|||..          .+++..+.+        .++|..+          .|. + +++.. .+.   +    .
T Consensus        84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sI--------a~~L~kG~LVIlEST~~PGT-T-e~v~~plle~~sgL~~~~  153 (436)
T COG0677          84 ECDVFIICVPTPLKKYREPDLSYVESAARSI--------APVLKKGDLVILESTTPPGT-T-EEVVKPLLEERSGLKFGE  153 (436)
T ss_pred             cCCEEEEEecCCcCCCCCCChHHHHHHHHHH--------HHhcCCCCEEEEecCCCCCc-H-HHHHHHHHhhcCCCcccc
Confidence            999999999631          244555555        3444332          333 2 33222 111   1    1


Q ss_pred             cE------EEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHH---HHHH
Q 023866          123 RF------IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI---FLAI  192 (276)
Q Consensus       123 ~v------v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~---~~~~  192 (276)
                      .+      -|.+|.....--....-+.+|  .+++..+.+..+.+.+=.. +.++...-.....+.-  +.|=   -.++
T Consensus       154 Df~laysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E--N~fRdVNIALa  229 (436)
T COG0677         154 DFYLAYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE--NTFRDVNIALA  229 (436)
T ss_pred             eeeEeeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh--hhhhHHHHHHH
Confidence            11      123333221110111123333  4677888888888887643 4444322111222111  1110   0234


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHH
Q 023866          193 EALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       193 ~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                      +-|+-.+.++|++.-++.++++
T Consensus       230 NElali~~~~GIdvwevIeaAn  251 (436)
T COG0677         230 NELALICNAMGIDVWEVIEAAN  251 (436)
T ss_pred             HHHHHHHHHhCCcHHHHHHHhc
Confidence            4555567789999777766654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.42  E-value=1.2e-06  Score=76.66  Aligned_cols=78  Identities=24%  Similarity=0.301  Sum_probs=59.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec--cCchhhhcCCCEEEEeeCcccHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      ..++|+|||+|.||..+++.|...|.   .+|+++ +|++++.+.+.+ .|....  .+..+.+.++|+||.|++.....
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~  252 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYA  252 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence            46899999999999999999987653   389999 999998877766 565432  34456678999999999876654


Q ss_pred             HHHHH
Q 023866           86 AAVIT   90 (276)
Q Consensus        86 ~vl~~   90 (276)
                      .++..
T Consensus       253 ~~~~~  257 (311)
T cd05213         253 KIVER  257 (311)
T ss_pred             HHHHH
Confidence            44433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.40  E-value=1.7e-06  Score=75.70  Aligned_cols=107  Identities=11%  Similarity=0.060  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||..+++.|...|+    +|++| +|++++...+...  ....+..+++++||+|++++|.. ..+.
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~~--~~~~~l~e~l~~aDvvv~~lPlt~~T~~  206 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQSF--AGREELSAFLSQTRVLINLLPNTPETVG  206 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCceee--cccccHHHHHhcCCEEEECCCCCHHHHH
Confidence            456899999999999999999999998    99999 9876542211111  11246678899999999999853 4555


Q ss_pred             HHHHHhhccccccCCcccCC-CCcccHHHHHHHcCC
Q 023866           87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGH  121 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~  121 (276)
                      ++..-.-...+++.-+++-. .+++..+.|.+.+..
T Consensus       207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~  242 (312)
T PRK15469        207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS  242 (312)
T ss_pred             HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence            55321000111112222222 334356677766653

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.39  E-value=8.2e-07  Score=78.42  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ...++|||||+|+||+++++.|. ..|.    +|++| |+++....   ..++....+..+++++||+|++++|...
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~  212 (332)
T PRK08605        144 IKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATK  212 (332)
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCc
Confidence            45689999999999999999984 4566    88888 98865431   1234444578889999999999998654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.35  E-value=1.8e-06  Score=75.04  Aligned_cols=71  Identities=13%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ....|++|||+|.+|..++..|.+.|.    +|+++ +|++++.+.+...|....  .+..+.+.++|+||.++|+..
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~  222 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALV  222 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhh
Confidence            356899999999999999999999997    99999 999988877777787643  345577889999999998753

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.35  E-value=0.00016  Score=62.64  Aligned_cols=147  Identities=17%  Similarity=0.180  Sum_probs=94.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---cCce--eccCchhhh---cCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVK--VLSDNNAVV---EYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g~~--~~~~~~~~~---~~aDvI~lav~~   81 (276)
                      .+.||.||++.||..++.+...+||    .|.+| ||+.++.+++.+   .|..  -..++++.+   +..-+|++.|+.
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA   80 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA   80 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence            4689999999999999999999999    99999 999999988765   3433  345677664   568899999986


Q ss_pred             c-cHHHHHHHHhhccccccCCcccCC-----CCc--c--cHHHHHHHcC-CCcEEEEecCccc-cccCcceEeecCCCCC
Q 023866           82 Q-VDKAAVITEEAFGFCCCRSEIERP-----SGL--Q--RWSRWVEWTG-HSRFIRVMPNTPS-AVGEAATVMSLGGTAT  149 (276)
Q Consensus        82 ~-~~~~vl~~~~~~~~~~~~~~l~~~-----~g~--~--~~~~l~~~l~-~~~vv~~~p~~~~-~~~~g~~~i~~~~~~~  149 (276)
                      - .+...++++        .|++..+     .|-  .  +....+++.. +.-++.+--.... -.+.|...+..   ++
T Consensus        81 G~pVD~~I~~L--------~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpG---g~  149 (487)
T KOG2653|consen   81 GAPVDQFIEEL--------VPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPG---GS  149 (487)
T ss_pred             CCcHHHHHHHH--------HhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCC---CC
Confidence            5 466777777        5666543     222  0  1223333222 2233432111111 11234454433   48


Q ss_pred             HHHHHHHHHHhhhcC-------ce-EEcCCC
Q 023866          150 EEDGELIGKLFGSVG-------KI-WRADEK  172 (276)
Q Consensus       150 ~~~~~~v~~ll~~~G-------~~-~~~~e~  172 (276)
                      +++.+.++++|..+.       .+ .+++|.
T Consensus       150 ~~Awp~ik~ifq~iaakv~~~epCc~wvG~~  180 (487)
T KOG2653|consen  150 KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG  180 (487)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCeeeecCC
Confidence            899999999997652       23 567773

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.8e-05  Score=64.57  Aligned_cols=238  Identities=13%  Similarity=0.042  Sum_probs=130.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      .+.+||||.|..|.+....-.+.++    .+. +. .|++++++.|.+ .+... .+.+...+-.+++|.-+|+..+..+
T Consensus        10 ~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~vpd~~~s~v   83 (289)
T COG5495          10 RVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVDVPDALYSGV   83 (289)
T ss_pred             eeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEecchHHHHHHH
Confidence            3789999999999985544444444    443 44 899999888777 33322 1222334456788888887755555


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccccc----C-cceEeecCCCCCHHHHHHHHHHhh
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVG----E-AATVMSLGGTATEEDGELIGKLFG  161 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~----~-g~~~i~~~~~~~~~~~~~v~~ll~  161 (276)
                      ...-    .+.+..++-+.+|-...+.+.+.-. ++--..+||+..-+.-    + -.-.+++..+.++--...++.+..
T Consensus        84 aa~~----~~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~  159 (289)
T COG5495          84 AATS----LNRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLAL  159 (289)
T ss_pred             HHhc----ccCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHH
Confidence            4332    1222344544455533344444322 3334567776432210    0 001122222345566788899999


Q ss_pred             hcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCC
Q 023866          162 SVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS  240 (276)
Q Consensus       162 ~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~s  240 (276)
                      .+|.. +.+.|++--.+.+...+...|+-..+.--.+..+..|+|+-+..--+.+.+.|+.....+.+. ...|...|..
T Consensus       160 emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~-a~aLTgpVaR  238 (289)
T COG5495         160 EMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARGALENTLQRGQ-ACALTGPVAR  238 (289)
T ss_pred             HhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHHHHHHHHHhhh-hhcccCCccc
Confidence            99965 667666544433322111122212121122334578888765544466788888887765542 2245555543


Q ss_pred             C-CchHHHHHHHHHhCChH
Q 023866          241 P-GGTTIAGIHELEKSGFR  258 (276)
Q Consensus       241 p-~g~t~~~l~~l~~~~~~  258 (276)
                      . .+..++.+..|++-+-.
T Consensus       239 GD~~vve~hl~al~~ig~~  257 (289)
T COG5495         239 GDWQVVEEHLRALEKIGAN  257 (289)
T ss_pred             CcHHHHHHHHHHHHHhhHH
Confidence            2 34567888888876433

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.29  E-value=2.1e-06  Score=80.44  Aligned_cols=105  Identities=14%  Similarity=0.185  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+.+|+.|...|.    +|++| ||... .+...+.|+....+..+++++||+|++++|.. ..+.
T Consensus       136 l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  209 (525)
T TIGR01327       136 LYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRG  209 (525)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence            456899999999999999999998898    99999 98532 22334467765567889999999999999854 4444


Q ss_pred             HHH--HHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866           87 AVI--TEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG  120 (276)
Q Consensus        87 vl~--~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~  120 (276)
                      ++.  .+.  ..+++.-+++.. .++...+.|.+.+.
T Consensus       210 li~~~~l~--~mk~ga~lIN~aRG~~vde~aL~~aL~  244 (525)
T TIGR01327       210 LIGAEELA--KMKKGVIIVNCARGGIIDEAALYEALE  244 (525)
T ss_pred             CcCHHHHh--cCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence            441  110  111111222222 44436667776665

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.28  E-value=1.5e-06  Score=75.62  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=53.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcc-cHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQ-VDK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~-~~~   85 (276)
                      ...++|||||+|+||+.+++.+...|.    +|.+| +|+...      .+.. ...+.++++++||+|++++|.. ..+
T Consensus       120 L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~  188 (303)
T PRK06436        120 LYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETR  188 (303)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhh
Confidence            356899999999999999998877798    99999 987432      2332 2457889999999999999853 344


Q ss_pred             HHH
Q 023866           86 AAV   88 (276)
Q Consensus        86 ~vl   88 (276)
                      .++
T Consensus       189 ~li  191 (303)
T PRK06436        189 GMI  191 (303)
T ss_pred             cCc
Confidence            443

>PLN00203 glutamyl-tRNA reductase

Probab=98.27  E-value=3e-06  Score=78.72  Aligned_cols=80  Identities=26%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-Cce----eccCchhhhcCCCEEEEeeC-
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVK-   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDvI~lav~-   80 (276)
                      ....+|+|||+|.||..++.+|...|.   .+|+++ +|++++++.+.+ . +..    ...+..+.+.++|+||.|++ 
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence            456899999999999999999998885   379999 999999988876 3 332    22455677889999999984 


Q ss_pred             --cccHHHHHHHH
Q 023866           81 --PQVDKAAVITE   91 (276)
Q Consensus        81 --~~~~~~vl~~~   91 (276)
                        |-...+.++.+
T Consensus       340 ~~pvI~~e~l~~~  352 (519)
T PLN00203        340 ETPLFLKEHVEAL  352 (519)
T ss_pred             CCCeeCHHHHHHh
Confidence              33345555554

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.26  E-value=8e-06  Score=72.32  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce-eccCchhhhcC--CCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDvI~lav~~~   82 (276)
                      |.++||||||+|.++ ...+..+.+.+.. ..-+.++ ||++++++.+.+ .|+. .+++.++++++  .|+|++|+|++
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~   78 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA   78 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence            467899999999665 4577777775520 0134566 999999988877 7774 77788888775  59999999988


Q ss_pred             cHHHHHHH
Q 023866           83 VDKAAVIT   90 (276)
Q Consensus        83 ~~~~vl~~   90 (276)
                      ...++...
T Consensus        79 ~H~e~~~~   86 (342)
T COG0673          79 LHAELALA   86 (342)
T ss_pred             hhHHHHHH
Confidence            65555443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.25  E-value=5.7e-06  Score=72.21  Aligned_cols=72  Identities=24%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCcee-ccCchhhhcCCCEEEEeeCccc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      +..+++|||+|.+|...+..+....  +..+|.+| +|++++++.+.+    .++.+ ..+.++++.++|+||.|++...
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGL--PVRRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhC--CCCEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence            4579999999999999999987531  23589999 999999887765    24333 3567788999999999998654

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.24  E-value=4.7e-06  Score=70.16  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhh-hcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDvI~lav~~~~~~~vl   88 (276)
                      .+||||||||.||..+++.|.+.+. ..-++...++|++++.+.+... +.++.+.+++ ...+|+|+-|-.++.+++..
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~   79 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEHA   79 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHHH
Confidence            4799999999999999999865322 2225543339998888877664 6677788885 67899999999999998888


Q ss_pred             HHHh
Q 023866           89 ITEE   92 (276)
Q Consensus        89 ~~~~   92 (276)
                      ..+.
T Consensus        80 ~~iL   83 (267)
T PRK13301         80 EGCL   83 (267)
T ss_pred             HHHH
Confidence            7774

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.24  E-value=5e-06  Score=71.13  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |+||||||+|+||..+++.+.+...   -++...+++  +.++.......++.++++.+++..+.|+|+.|+++..+.+.
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~---~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~   77 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPD---LRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEH   77 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCC---ceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence            4799999999999999999876522   155433244  33332222223666777777664568999999999877777


Q ss_pred             HHHHh
Q 023866           88 VITEE   92 (276)
Q Consensus        88 l~~~~   92 (276)
                      .....
T Consensus        78 ~~~aL   82 (265)
T PRK13303         78 VVPIL   82 (265)
T ss_pred             HHHHH
Confidence            66653

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.23  E-value=2.8e-06  Score=79.57  Aligned_cols=74  Identities=15%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+.+++.|...|.    +|++| ||+... +.....|+... +..+++++||+|++++|.. ..+.
T Consensus       138 l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~  210 (526)
T PRK13581        138 LYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRG  210 (526)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhc
Confidence            356899999999999999999999998    99999 986432 23344677655 7889999999999999854 3444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       211 li  212 (526)
T PRK13581        211 LI  212 (526)
T ss_pred             Cc
Confidence            44

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=2.5e-06  Score=73.43  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHH
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~   85 (276)
                      ...++|+|||.| .||.+|+..|.++|+    .|++| +++..              ++.+++++||+||+|+.. ..+.
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~  217 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLID  217 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhccc
Confidence            356899999996 999999999999999    99999 87632              567888999999999964 3343


Q ss_pred             H
Q 023866           86 A   86 (276)
Q Consensus        86 ~   86 (276)
                      +
T Consensus       218 ~  218 (301)
T PRK14194        218 A  218 (301)
T ss_pred             H
Confidence            3

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.21  E-value=6.4e-06  Score=71.71  Aligned_cols=78  Identities=12%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~   84 (276)
                      |+++||+|||+|+||..++..+.+. ++    ++..+++|++ ++..  ...++....+..+...+.|+|++|+|+.. .
T Consensus         1 M~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~   74 (324)
T TIGR01921         1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDI   74 (324)
T ss_pred             CCCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCH
Confidence            3468999999999999999988764 44    7664338885 4332  12343333455566788999999998654 3


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      ..+...+
T Consensus        75 ~~~~~~L   81 (324)
T TIGR01921        75 PEQAPYF   81 (324)
T ss_pred             HHHHHHH
Confidence            3443333

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.21  E-value=8.1e-06  Score=69.86  Aligned_cols=100  Identities=19%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHh-CCCCCCCeEEEEeCCC-HHHH-HHHHH------cCceeccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSN-LKRR-DAFES------IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~-~~~~-~~l~~------~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      ++||+++| +|.||..+++.+.+ .++    ++...++|. ++.. +.+.+      .|+.++++.+++...+|+||.++
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGL----QLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence            37999999 69999999999875 355    666433853 3221 11211      35666677777655689999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHH
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEW  118 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~  118 (276)
                      +|....+.+....+.|    .+++..+.|. +.++.+++
T Consensus        77 ~p~~~~~~~~~al~~g----~~vVigttg~-~~e~~~~l  110 (266)
T TIGR00036        77 TPEGVLNHLKFALEHG----VRLVVGTTGF-SEEDKQEL  110 (266)
T ss_pred             ChHHHHHHHHHHHHCC----CCEEEECCCC-CHHHHHHH
Confidence            9998887777664333    5667655677 76655443

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.21  E-value=2.8e-05  Score=63.35  Aligned_cols=150  Identities=14%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC--------------ceec
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG--------------VKVL   62 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g--------------~~~~   62 (276)
                      |..-||+|+|.|.+|++.|.-+...||    +|..| |..++.++.           +.+.|              +..+
T Consensus         1 ms~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t   75 (313)
T KOG2305|consen    1 MSFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGT   75 (313)
T ss_pred             CCccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCC
Confidence            345799999999999999999999999    99999 998876432           22222              2345


Q ss_pred             cCchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcccC-CCCcccHHHHHHHc-CCCcEEEEecCccccccCc
Q 023866           63 SDNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEIER-PSGLQRWSRWVEWT-GHSRFIRVMPNTPSAVGEA  138 (276)
Q Consensus        63 ~~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l~~-~~g~~~~~~l~~~l-~~~~vv~~~p~~~~~~~~g  138 (276)
                      ++..|+++.+=.|=-|+|-+ .+ ++++.++.  .+..+..++++ .+.. ..+.+..-+ ...+++-+||..|..+-- 
T Consensus        76 ~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD--~i~d~~tIlaSSTSt~-mpS~~s~gL~~k~q~lvaHPvNPPyfiP-  151 (313)
T KOG2305|consen   76 TSLNELVKGAIHIQECVPEDLNLKKQLYKQLD--EIADPTTILASSTSTF-MPSKFSAGLINKEQCLVAHPVNPPYFIP-  151 (313)
T ss_pred             ccHHHHHhhhhhHHhhchHhhHHHHHHHHHHH--HhcCCceEEecccccc-ChHHHhhhhhhhhheeEecCCCCCcccc-
Confidence            67788888887777788754 23 34444441  11111334433 2444 344443333 235777788866554322 


Q ss_pred             ceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866          139 ATVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus       139 ~~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      .+-+++.+-++++..++..++++.+|..
T Consensus       152 LvElVPaPwTsp~tVdrt~~lM~sigq~  179 (313)
T KOG2305|consen  152 LVELVPAPWTSPDTVDRTRALMRSIGQE  179 (313)
T ss_pred             hheeccCCCCChhHHHHHHHHHHHhCCC
Confidence            2235677778899999999999999954

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.20  E-value=6.7e-06  Score=63.48  Aligned_cols=66  Identities=23%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c--CceeccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+ |++|+.++..|...++  ..++.++ |+++++++-..    .    .  ...+..+..+.+++||+|+++.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita   77 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA   77 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--CCceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence            69999999 9999999999998876  3479999 99987654322    2    1  2334445667789999999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.20  E-value=2.8e-06  Score=76.05  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+.+++.+...|+    +|.+| |+.....     .+.....+.++++++||+|++++|-
T Consensus       114 l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Pl  177 (381)
T PRK00257        114 LAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPL  177 (381)
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcC
Confidence            356899999999999999999999998    99999 8754321     1222234678889999999999984

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.20  E-value=8.2e-06  Score=71.01  Aligned_cols=71  Identities=23%  Similarity=0.359  Sum_probs=59.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+++|||+|..|...+..+..-  .+..+|.+| +|++++++.+.+     .|  +..+.+.++++.+||||+.+++.
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s  192 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASV--YNPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS  192 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhc--CCCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence            457899999999999999988764  256799999 999999887764     25  44567899999999999999975


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus       193 ~  193 (301)
T PRK06407        193 D  193 (301)
T ss_pred             C
Confidence            4

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.18  E-value=9.4e-06  Score=71.57  Aligned_cols=70  Identities=16%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHH-----cCce--eccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDvI~lav~   80 (276)
                      +..+++|||+|.+|...+..|.. .+   ..+|++| +|++++++.+.+     .|+.  ...+.++++.+||+|+.|++
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~---i~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRD---IRSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCC---ccEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence            45789999999999999999974 33   2589999 999999887765     2554  35667788999999999997


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      ..
T Consensus       204 s~  205 (326)
T TIGR02992       204 SE  205 (326)
T ss_pred             CC
Confidence            64

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.18  E-value=5.2e-06  Score=75.24  Aligned_cols=70  Identities=20%  Similarity=0.289  Sum_probs=56.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC-cee--ccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..+||.|||+|.||..++.+|.+.|.   .+|+++ +|+.++++.+.+ .+ ...  .++..+.+.++|+||.|+...
T Consensus       180 ~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        180 SSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence            45799999999999999999998885   379999 999999988877 44 322  244467788999999999643

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.18  E-value=9.2e-06  Score=71.77  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCce--eccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.++|+|||+|.+|.+.+..+....  +..+|++| +|++++++.+.+     .|+.  ...+.++++.++|+|+.|++.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~--~~~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s  207 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVR--PIREVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPS  207 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCC
Confidence            4479999999999999999887532  12489999 999999988765     2554  356777889999999999976


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      +
T Consensus       208 ~  208 (330)
T PRK08291        208 E  208 (330)
T ss_pred             C
Confidence            5

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.16  E-value=8e-06  Score=71.57  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCc--eeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +..+++|||+|..|...+..+...  .+.++|.+| +|++++++.+.+    .++  ..+.+.++++++||+|+.|++..
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~--~~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~  203 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAV--RPIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST  203 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHH--S--SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred             CCceEEEECCCHHHHHHHHHHHHh--CCceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence            446899999999999999988764  245799999 999999888775    243  45678899999999999999765


Q ss_pred             c
Q 023866           83 V   83 (276)
Q Consensus        83 ~   83 (276)
                      .
T Consensus       204 ~  204 (313)
T PF02423_consen  204 T  204 (313)
T ss_dssp             S
T ss_pred             C
Confidence            4

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.16  E-value=1.3e-05  Score=70.21  Aligned_cols=71  Identities=11%  Similarity=0.175  Sum_probs=58.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCc--eeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +..+++|||+|..+...++.+... . +.++|++| +|++++++.+.+    .++  ..+++.++++++||+|+.|++..
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence            457899999999999999988764 2 56799999 999999887664    244  34678889999999999999754

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.15  E-value=6.9e-06  Score=73.55  Aligned_cols=68  Identities=31%  Similarity=0.461  Sum_probs=57.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~   80 (276)
                      ...++.|||+|-||...+++|.++|.   .+|++. ||+.++++.|.+ .|..+  .++..+.+.++|+||.|+-
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs  247 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS  247 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence            45789999999999999999999985   489999 999999999887 66443  3555677889999999984

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.13  E-value=7.5e-06  Score=74.58  Aligned_cols=69  Identities=26%  Similarity=0.402  Sum_probs=54.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...+|+|||+|.||..++..|...|.   .+|+++ +|++++++.+.+ .|...  ..+..+.+..+|+||.|++.
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s  250 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA  250 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC
Confidence            45799999999999999999998883   289999 999998876665 45322  23455678899999999853

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02928 oxidoreductase family protein

Probab=98.11  E-value=7e-06  Score=72.89  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH------------HHcCceeccCchhhhcCCCEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDvI   75 (276)
                      ...++|||||+|.||+.+|+.|...|.    +|++| +|+..+....            ...+. ...+..+++++||+|
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiV  230 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIV  230 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEE
Confidence            456899999999999999999998898    99999 9874321111            00111 234678899999999


Q ss_pred             EEeeCc
Q 023866           76 VFSVKP   81 (276)
Q Consensus        76 ~lav~~   81 (276)
                      ++++|-
T Consensus       231 vl~lPl  236 (347)
T PLN02928        231 VLCCTL  236 (347)
T ss_pred             EECCCC
Confidence            999983

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.11  E-value=9.1e-06  Score=74.22  Aligned_cols=69  Identities=29%  Similarity=0.430  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|+|||+|.||..++..|...|.   .+|+++ +|++++++.+.+ .|...  ..+..+.+.++|+||.|++.
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s  252 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA  252 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC
Confidence            45799999999999999999988775   479999 999999887765 55332  23455667899999999964

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.10  E-value=2.2e-05  Score=61.29  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccH--H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD--K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~--~   85 (276)
                      ...+++.++|.|..|+.+|+.|...|-    +|+|+ +++|-++-++...|..+. +.++++..+|++|.++-...+  .
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~   94 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG   94 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH
Confidence            346789999999999999999999998    99999 999987766666788875 578889999999999966543  4


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +-+.++
T Consensus        95 e~~~~m  100 (162)
T PF00670_consen   95 EHFRQM  100 (162)
T ss_dssp             HHHHHS
T ss_pred             HHHHHh
Confidence            666666

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.10  E-value=6.3e-06  Score=72.27  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v   87 (276)
                      ..+++||||+|++|+.++..+..-|.    +|.+| |+...+. .....+.....+.++++++||+|++.+|-. ..+.+
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            36899999999999999999999999    99999 9833321 112245555577899999999999999843 34444


Q ss_pred             H
Q 023866           88 V   88 (276)
Q Consensus        88 l   88 (276)
                      +
T Consensus       215 i  215 (324)
T COG0111         215 I  215 (324)
T ss_pred             c
Confidence            4

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.09  E-value=8.2e-06  Score=71.51  Aligned_cols=67  Identities=16%  Similarity=0.359  Sum_probs=52.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..+++||||+|++|.++|+.+..-|.    +|..| +|++. .+.-+..+..... ..+++++||+|.+.+|..
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt  211 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLT  211 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCC
Confidence            46899999999999999999875555    88888 98875 2222334555544 889999999999999853

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.08  E-value=3e-05  Score=66.96  Aligned_cols=83  Identities=11%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHHcCcee-ccCchhhhc-----CCCEEEEe
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVFS   78 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDvI~la   78 (276)
                      +|+++||||||+|++|..++..+.+...   -++...+++++++.  +..++.|+.. +.+.+++++     +.|+||.+
T Consensus         1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~A   77 (302)
T PRK08300          1 MMSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDA   77 (302)
T ss_pred             CCCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence            3677999999999999998888876422   26664349988642  4444578865 356666664     58999999


Q ss_pred             eCcccHHHHHHHHh
Q 023866           79 VKPQVDKAAVITEE   92 (276)
Q Consensus        79 v~~~~~~~vl~~~~   92 (276)
                      +++....+......
T Consensus        78 T~a~~H~e~a~~a~   91 (302)
T PRK08300         78 TSAGAHVRHAAKLR   91 (302)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99887776666553

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.08  E-value=1.2e-05  Score=70.23  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=50.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC--ceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +||+|||+|.+|++++..|...|.  ..+|.++ ||++++++.+..        .+  ..+.....+.+.+||+||+++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence            489999999999999999998884  1289999 999888765443        12  2233334455789999999984

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11579 putative oxidoreductase; Provisional

Probab=98.08  E-value=4.1e-05  Score=68.17  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=53.8

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHc-CceeccCchhhhc--CCCEEEEeeCcccH
Q 023866           10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      ++||||||+|.||.. .+..+.+. +.    ++..++++++++..  .+. +...+.+.+++++  +.|+|++|+|+...
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            579999999999984 55655543 34    66643399987654  233 5566788888885  57999999998865


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .++....
T Consensus        78 ~~~~~~a   84 (346)
T PRK11579         78 FPLAKAA   84 (346)
T ss_pred             HHHHHHH
Confidence            5555444

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.07  E-value=1.3e-05  Score=70.21  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=49.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHHc-----CceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      |||+|||+|.+|.+++..|...|+  ..+|.++ |+++++++.    +...     ...+..+..+.+++||+||++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence            689999999999999999999884  2378999 999877653    2221     11222234466899999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06046 alanine dehydrogenase; Validated

Probab=98.07  E-value=1.9e-05  Score=69.58  Aligned_cols=71  Identities=18%  Similarity=0.307  Sum_probs=56.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+++|||+|.+|...+..+....  +..+|.+| +|++++.+.+.+     .+.  ....+.+++++ +|+|++|+|.
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS  203 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence            4579999999999999999987542  34588999 999999887665     253  44667778776 9999999986


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      ..
T Consensus       204 ~~  205 (326)
T PRK06046        204 RK  205 (326)
T ss_pred             CC
Confidence            53

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.06  E-value=9.3e-06  Score=72.52  Aligned_cols=64  Identities=13%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      ....++|||||+|+||+.+++.|..-|.    +|.+| |+.....    .... ...+.++++++||+|++.+|
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTP  176 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCC
Confidence            3467899999999999999999999998    99999 8743211    1111 23578899999999999887

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.05  E-value=2.7e-05  Score=64.95  Aligned_cols=76  Identities=17%  Similarity=0.307  Sum_probs=60.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCcee---ccCch----hh-hcCCCEEEEeeC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV---LSDNN----AV-VEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~---~~~~~----~~-~~~aDvI~lav~   80 (276)
                      |+|.|||+|.+|..+|+.|.+.|+    +|.++ +++++++++...  .+..+   ..+..    ++ +.++|+++.++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            689999999999999999999999    99999 999999888444  44332   12222    22 568999999998


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      .+....++..+
T Consensus        76 ~d~~N~i~~~l   86 (225)
T COG0569          76 NDEVNSVLALL   86 (225)
T ss_pred             CCHHHHHHHHH
Confidence            88777776655

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.04  E-value=2.4e-05  Score=70.19  Aligned_cols=71  Identities=25%  Similarity=0.341  Sum_probs=57.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----c-C---ceeccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDvI~lav   79 (276)
                      +..+++|||+|.++...+..+..--- ..++|++| +|++++++.+.+     . +   +.++.+.++++++||||+.|+
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT  231 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN  231 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence            45789999999999999998876320 14699999 999999887654     2 3   446788999999999999999


Q ss_pred             Cc
Q 023866           80 KP   81 (276)
Q Consensus        80 ~~   81 (276)
                      +.
T Consensus       232 ~s  233 (379)
T PRK06199        232 SG  233 (379)
T ss_pred             CC
Confidence            63

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.03  E-value=2.6e-05  Score=68.73  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+++|||+|.+|...+..+....  +..+|.+| +|++++.+.+.+     .++  ....+.++++.++|+|+.|+|.
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s  202 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVR--DIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA  202 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcC--CccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence            4578999999999999988876431  23589999 999999887765     244  3456778889999999999986


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      ..
T Consensus       203 ~~  204 (325)
T PRK08618        203 KT  204 (325)
T ss_pred             CC
Confidence            53

>PRK07589 ornithine cyclodeaminase; Validated

Probab=98.03  E-value=2.6e-05  Score=69.03  Aligned_cols=72  Identities=15%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC--ceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +..+++|||+|..+...++.+..--  +..+|++| +|++++++.+.+    .+  +..+.+.++++++||+|+.|++..
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~  204 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK  204 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence            4578999999999999988877642  55799999 999999887664    24  445678899999999999999754


Q ss_pred             c
Q 023866           83 V   83 (276)
Q Consensus        83 ~   83 (276)
                      .
T Consensus       205 ~  205 (346)
T PRK07589        205 T  205 (346)
T ss_pred             C
Confidence            3

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=98.03  E-value=3e-05  Score=67.88  Aligned_cols=72  Identities=22%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----c-C--ceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +...++|||+|.++...+..+.+-  .+..+|.+| +|++++.+.+..    . +  +..+.+.+++++.||+|+.|++.
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s  205 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAV--RDIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS  205 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhh--CCccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence            457899999999999999988753  356799999 999999887764    2 3  45667888999999999999986


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      ..
T Consensus       206 ~~  207 (330)
T COG2423         206 TE  207 (330)
T ss_pred             CC
Confidence            65

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.02  E-value=2e-05  Score=70.17  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC---cee-----c--cCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG---VKV-----L--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g---~~~-----~--~~~~~~~~~aDvI~lav   79 (276)
                      |++|-+||+|.+|+.++..|.+.|-   .+|++. +|++++++++....   ++.     .  ....+++++.|+||-|.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d---~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGD---GEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCC---ceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            5899999999999999999999882   299999 99999999887642   321     1  12346688899999999


Q ss_pred             CcccHHHHHHHH
Q 023866           80 KPQVDKAAVITE   91 (276)
Q Consensus        80 ~~~~~~~vl~~~   91 (276)
                      |+..-..+++..
T Consensus        77 p~~~~~~i~ka~   88 (389)
T COG1748          77 PPFVDLTILKAC   88 (389)
T ss_pred             CchhhHHHHHHH
Confidence            998776776544

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.00  E-value=1.7e-05  Score=69.65  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...+++||||+|++|..+++.+. .-|.    +|..| +|.... +.....++.. .+.++++++||+|++++|-
T Consensus       143 L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~pl  210 (323)
T PRK15409        143 VHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPL  210 (323)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCC
Confidence            45689999999999999999886 5566    88877 876422 2223356654 4788999999999999984

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.97  E-value=1.4e-05  Score=73.00  Aligned_cols=76  Identities=18%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             CeEEEEcccHHHHHHHH--HHHhC-CCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866           11 FILGFIGAGKMAESIAK--GVAKS-GVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~--~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI   75 (276)
                      +||+|||+|.||.+++.  .++.. . ....+|.+| |+++++++....        .+    +..++|..+++++||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~~g~eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPE-LSGSTIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCC-CCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence            58999999999998665  45422 1 122389999 999988765442        12    33456667889999999


Q ss_pred             EEeeCcccHHHHH
Q 023866           76 VFSVKPQVDKAAV   88 (276)
Q Consensus        76 ~lav~~~~~~~vl   88 (276)
                      |.+++....+...
T Consensus        79 i~ai~~~~~~~~~   91 (423)
T cd05297          79 INTIQVGGHEYTE   91 (423)
T ss_pred             EEeeEecCccchh
Confidence            9999876554443

linked to 3D####ucture

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.97  E-value=1.5e-05  Score=72.27  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|++|+.+|+.+..-|.    +|..| ||++..    ...++....+.+++++.||+|++.+|-. ..+.
T Consensus       149 L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~  219 (409)
T PRK11790        149 VRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKN  219 (409)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence            456899999999999999999998898    99999 986431    1123444557899999999999999843 3444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       220 li  221 (409)
T PRK11790        220 MI  221 (409)
T ss_pred             cc
Confidence            43

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.95  E-value=3.7e-05  Score=66.40  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----C-cee--ccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKV--LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g-~~~--~~~~~~~~~~aDvI~lav~   80 (276)
                      ..+++.|||+|.+|++++..|.+.|.   .+|+++ ||+.++++.+.+ .    . ..+  ..+..+.+.++|+||-|+|
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP  201 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence            44789999999999999999999885   479999 999999988765 1    1 222  1223345678999999987


Q ss_pred             c
Q 023866           81 P   81 (276)
Q Consensus        81 ~   81 (276)
                      .
T Consensus       202 ~  202 (284)
T PRK12549        202 T  202 (284)
T ss_pred             C
Confidence            4

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.94  E-value=3.1e-05  Score=66.77  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCC--C-CCCCeEEEEeCCCHHH---HHHHHH------------------cCceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSG--V-LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g--~-~~~~~V~v~~~r~~~~---~~~l~~------------------~g~~~~~   63 (276)
                      ++..||+|||.|+.|+++++-+.+.-  + .-..+|..| -+..+.   .+.|.+                  .++...+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            34589999999999999998765421  1 112357777 332211   112221                  1344567


Q ss_pred             CchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCC-------CCc---------c-cHHHHHHHcCCCcE-E
Q 023866           64 DNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGL---------Q-RWSRWVEWTGHSRF-I  125 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~---------~-~~~~l~~~l~~~~v-v  125 (276)
                      |..+++.++|+++..+|+|.+..+++++        ..++.+.       .|+         . -.+.+.+.++ .++ +
T Consensus        98 dl~ea~~dADilvf~vPhQf~~~ic~~l--------~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~v  168 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVPHQFIPRICEQL--------KGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSV  168 (372)
T ss_pred             hHHHHhccCCEEEEeCChhhHHHHHHHH--------hcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCcee
Confidence            7889999999999999999999999999        3334332       333         0 1244555554 222 2


Q ss_pred             EEecCccccccCcc---eEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866          126 RVMPNTPSAVGEAA---TVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus       126 ~~~p~~~~~~~~g~---~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      -.-||.+.++.+..   +.+.+.+  +.+.-..+..+|+.--..
T Consensus       169 L~GaNiA~EVa~~~f~e~tIg~~~--~~~~~~~l~~lf~~p~Fr  210 (372)
T KOG2711|consen  169 LMGANIASEVANEKFCETTIGYKD--KKEAGILLKKLFRTPYFR  210 (372)
T ss_pred             ecCCchHHHHHhccccceeEeccc--hhhcchHHHHHhCCCceE
Confidence            33467776654321   2233321  233333577888765543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=1.9e-05  Score=68.09  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeC-CCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      .+.++|+||| .|.||.+|+..|.++|+    .|++| + |++               +..+++++||+||.|++..
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~  212 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRP  212 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCCh
Confidence            4568999999 99999999999999999    99999 6 553               3467788999999999644

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.93  E-value=4.2e-05  Score=65.70  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----CceeccCchh-hhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDvI~lav~~~   82 (276)
                      +.+++.|+|+|.+|.+++..|.+.|+    +|+++ +|++++.+.+.+.    +.....+..+ ...++|+||.|+|..
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCC
Confidence            35789999999999999999999998    99999 9999988777652    3211112222 235799999999753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.91  E-value=7.7e-05  Score=66.13  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=57.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhhc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~   70 (276)
                      ++||||+|+|.||..+++.+.+...   -+|...++++++....+.+ .                  ++.+..+..++..
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~   77 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE   77 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence            4799999999999999998875421   2666544877765554433 2                  3444456667777


Q ss_pred             CCCEEEEeeCcccHHHHHHHHh
Q 023866           71 YSDVVVFSVKPQVDKAAVITEE   92 (276)
Q Consensus        71 ~aDvI~lav~~~~~~~vl~~~~   92 (276)
                      ++|+||.|+++....+......
T Consensus        78 ~vDVVIdaT~~~~~~e~a~~~~   99 (341)
T PRK04207         78 KADIVVDATPGGVGAKNKELYE   99 (341)
T ss_pred             cCCEEEECCCchhhHHHHHHHH
Confidence            8999999999987777666553

>PRK10206 putative oxidoreductase; Provisional

Probab=97.90  E-value=7.3e-05  Score=66.47  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcC-ceeccCchhhhc--CCCEEEEeeCccc
Q 023866           10 SFILGFIGAGKMAES-IAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~-la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      +.||||||+|.++.. .+..+...  ++    +|..++|+++++.+...+.+ +..+++.+++++  +.|+|++|+|+..
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~   76 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   76 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCE----EEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            469999999998753 34444332  34    67643399987654344454 567778888885  5799999999886


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..++....
T Consensus        77 H~~~~~~a   84 (344)
T PRK10206         77 HFEYAKRA   84 (344)
T ss_pred             HHHHHHHH
Confidence            65555444

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.90  E-value=5e-05  Score=65.47  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|+.++++.+.+ .+    +....+..+.+.++|+||-|+|..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g  196 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence            345789999999999999999999883   289999 999999888765 22    222112335567899999999743

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.90  E-value=3.7e-05  Score=70.12  Aligned_cols=78  Identities=15%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~   85 (276)
                      ...++++|||+|.+|..++..+...|.    +|+++ ++++.+.......|+... +..++++.+|+|++++.... + .
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~iI~~  325 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKDIITL  325 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCcccccCH
Confidence            456899999999999999999999888    89999 999887655555677643 56788999999999975433 3 2


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.+..+
T Consensus       326 e~~~~M  331 (476)
T PTZ00075        326 EHMRRM  331 (476)
T ss_pred             HHHhcc
Confidence            455444

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.89  E-value=2.5e-05  Score=68.34  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|+.+|+.+..-|.    +|..| ||.....    ..+.. ..+.++++++||+|++++|-
T Consensus       143 L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Pl  206 (311)
T PRK08410        143 IKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYE-RVSLEELLKTSDIISIHAPL  206 (311)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCce-eecHHHHhhcCCEEEEeCCC
Confidence            457899999999999999999887777    89999 9864321    22443 34688999999999999984

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.88  E-value=2.7e-05  Score=67.86  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v   87 (276)
                      ..++|||+|+|.+|+.+|++|...|-    .|..+ +|++.+.+...+.+.. ..+..+.+.++|+|++++|-. ....+
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~l  234 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHL  234 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence            35899999999999999999987553    55666 8887777666665554 346778899999999999854 34444


Q ss_pred             H
Q 023866           88 V   88 (276)
Q Consensus        88 l   88 (276)
                      +
T Consensus       235 i  235 (336)
T KOG0069|consen  235 I  235 (336)
T ss_pred             h
Confidence            4

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.88  E-value=4.7e-05  Score=66.61  Aligned_cols=65  Identities=20%  Similarity=0.182  Sum_probs=48.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c--Ccee--ccCchhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDvI~l   77 (276)
                      |+||+|||+|.||..++..+...|+  . +|.++ |+++++++...    +    .  ..++  +.+. +.+++||+||+
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii   76 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI   76 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence            4899999999999999999988875  2 78998 99887653321    1    1  1222  2344 55799999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      ++
T Consensus        77 ~~   78 (307)
T PRK06223         77 TA   78 (307)
T ss_pred             CC
Confidence            97

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.86  E-value=6.6e-05  Score=68.04  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++++|+|+|.+|..++..+...|.    +|+++ ++++.+.......|..+. +..++++.+|+||.++...
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~  278 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNK  278 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCH
Confidence            56799999999999999999999998    99999 999988766666677653 5678888999999998543

>PLN02494 adenosylhomocysteinase

Probab=97.86  E-value=6.3e-05  Score=68.52  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~   85 (276)
                      ...++++|+|+|.+|..++..+...|.    +|+++ ++++.+.......|.... +..++++.+|+||.++.... + .
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~  325 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMV  325 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHH
Confidence            346899999999999999999988887    89999 999887666656676653 56778899999999876544 2 5


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.+..+
T Consensus       326 e~L~~M  331 (477)
T PLN02494        326 DHMRKM  331 (477)
T ss_pred             HHHhcC
Confidence            555555

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.85  E-value=3.1e-05  Score=58.08  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-----c---CceeccCchhhhcCCCEEEEeeCc
Q 023866           12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        12 kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ||+||| .|.+|+.+++.|.+.   +.-++. ++ .++.+.-+.+..     .   ...+.....+.+.++|+||+|+|.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h---p~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~   76 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH---PDFELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH   76 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT---STEEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred             CEEEECCCCHHHHHHHHHHhcC---CCccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence            799999 899999999988873   333544 44 666533222322     1   122333334556899999999999


Q ss_pred             ccHHHHHHHHh
Q 023866           82 QVDKAAVITEE   92 (276)
Q Consensus        82 ~~~~~vl~~~~   92 (276)
                      ....+....+.
T Consensus        77 ~~~~~~~~~~~   87 (121)
T PF01118_consen   77 GASKELAPKLL   87 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            88888877663

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.85  E-value=7e-05  Score=67.67  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...+|+|+|+|.+|..++..+...|.    +|+++ ++++.+++.+...|+... +..+++..+|+||.|+...
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~  268 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK  268 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH
Confidence            46799999999999999999999898    89998 999999888888888654 3457788999999998544

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.83  E-value=0.00011  Score=63.20  Aligned_cols=78  Identities=13%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHHcCceec-cCchhhhc--CCCEEEEeeCcccHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKVL-SDNNAVVE--YSDVVVFSVKPQVDK   85 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~g~~~~-~~~~~~~~--~aDvI~lav~~~~~~   85 (276)
                      +||||||+|+||..++..+.+...   -++...+++++++.  +..++.|+..+ .+.+++++  +.|+||+++|++...
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~   78 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA   78 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence            689999999999988887775422   16653338888753  34445787643 45666664  579999999988766


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.....
T Consensus        79 e~a~~a   84 (285)
T TIGR03215        79 RHARLL   84 (285)
T ss_pred             HHHHHH
Confidence            666554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.82  E-value=0.00018  Score=63.65  Aligned_cols=67  Identities=12%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +..||||||+ .||...+..+.+..  +    ++..++++++++++.+.+ .|+..+++.++++.+.|+++++++
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ip   71 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVR   71 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeC
Confidence            4589999999 68999999887643  4    666444999999998877 788888899999988888888874

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.80  E-value=9.1e-05  Score=66.75  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ...++|+|+|+|.+|..++..+...|.    +|+++ ++++.+.......|..+. +..++++.+|+||.++....
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~  262 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD  262 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH
Confidence            356799999999999999999998888    89999 999988766666787654 45677899999999986443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.79  E-value=8.5e-05  Score=68.85  Aligned_cols=70  Identities=21%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ...++++|+|+|.+|.+++..|.+.|+    +|+++ +|++++.+.+.+ .+...  ..+.. .+.++|+||.|+|...
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~  402 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSV  402 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCC
Confidence            356799999999999999999999998    99999 999998887765 23221  11222 2468999999998653

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.79  E-value=8.7e-05  Score=65.07  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=50.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-----cCceeccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      .+||+|||+|++|.+++..|...|..  .++.++ |+++++++...    +     ....+..+..+.+++||+||++-
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence            46999999999999999999888863  478999 99887654322    2     12334444556689999999976

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.76  E-value=8.8e-05  Score=64.78  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-H---HHH------c--CceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-A---FES------I--GVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~---l~~------~--g~~~~~~~~~~~~~aDvI~la   78 (276)
                      |||+|||+|.||..+|..+...|+.   +|.++ |++++..+ .   +.+      .  .+..+.+.++ +++||+||++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit   76 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT   76 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence            6999999999999999999988862   68888 88765433 1   111      1  1233455555 7899999999


Q ss_pred             eC
Q 023866           79 VK   80 (276)
Q Consensus        79 v~   80 (276)
                      +.
T Consensus        77 ag   78 (305)
T TIGR01763        77 AG   78 (305)
T ss_pred             CC
Confidence            84

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.75  E-value=0.00012  Score=64.47  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-----HHHH---cC--cee--ccCchhhhcCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----AFES---IG--VKV--LSDNNAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----~l~~---~g--~~~--~~~~~~~~~~aDvI~   76 (276)
                      +.+||+|||+|.||..++..+...|+   .+|.++ |+++++++     ....   .+  ..+  +.+. +.+++||+||
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI   79 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI   79 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence            45799999999999999999888885   268888 99887532     1111   12  223  2444 5689999999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      ++.
T Consensus        80 ~ta   82 (321)
T PTZ00082         80 VTA   82 (321)
T ss_pred             ECC
Confidence            977

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.74  E-value=0.00014  Score=62.78  Aligned_cols=70  Identities=21%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceecc---CchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDvI~lav~   80 (276)
                      +.+++.|||+|.+|++++..|.+.|.   .+|+++ +|++++++.+.+ .+    +....   +..+.+.++|+||-|+|
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence            45789999999999999999999886   479999 999999988875 21    11111   12244578999999997


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      ..
T Consensus       200 ~g  201 (282)
T TIGR01809       200 AD  201 (282)
T ss_pred             CC
Confidence            53

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.73  E-value=0.00017  Score=56.73  Aligned_cols=84  Identities=13%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-ceecc-C-chhhhcCCCEE
Q 023866            1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLS-D-NNAVVEYSDVV   75 (276)
Q Consensus         1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~-~-~~~~~~~aDvI   75 (276)
                      |..+|..  .+.++|.|||.|.+|...++.|++.|+    +|+++ +.  +..+++.+.+ +.... . .++-++++|+|
T Consensus         2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp--~~~~~l~~l~~i~~~~~~~~~~dl~~a~lV   74 (157)
T PRK06719          2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SP--EICKEMKELPYITWKQKTFSNDDIKDAHLI   74 (157)
T ss_pred             CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cC--ccCHHHHhccCcEEEecccChhcCCCceEE
Confidence            5567765  467999999999999999999999999    99998 64  3444444432 22211 1 11236789999


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      |.++.++.+...+...
T Consensus        75 iaaT~d~e~N~~i~~~   90 (157)
T PRK06719         75 YAATNQHAVNMMVKQA   90 (157)
T ss_pred             EECCCCHHHHHHHHHH
Confidence            9999888877666555

>PLN02306 hydroxypyruvate reductase

Probab=97.73  E-value=0.00011  Score=66.13  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHH-HHHH-HHcC------------ceeccCchhhhcCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVEYS   72 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~a   72 (276)
                      ...++|||||+|++|+.+|+.+. .-|.    +|..| ||.+.. .+.. ...+            .....+.++++++|
T Consensus       163 L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~s  237 (386)
T PLN02306        163 LKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA  237 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhC
Confidence            45689999999999999999875 5576    89988 987532 1111 1122            12234788999999


Q ss_pred             CEEEEeeCc
Q 023866           73 DVVVFSVKP   81 (276)
Q Consensus        73 DvI~lav~~   81 (276)
                      |+|++++|-
T Consensus       238 DiV~lh~Pl  246 (386)
T PLN02306        238 DVISLHPVL  246 (386)
T ss_pred             CEEEEeCCC
Confidence            999999873

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.73  E-value=7.5e-05  Score=65.64  Aligned_cols=66  Identities=17%  Similarity=0.308  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH--H--HH----cC--cee--ccCchhhhcCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDvI~   76 (276)
                      +.+||+|||+|.||..++..+...|.   .+|.++ |+++++++.  +  ..    .+  ..+  +++. +.+++||+||
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVV   78 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVV   78 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEE
Confidence            46799999999999999998888874   278899 998765432  1  11    12  222  2344 4679999999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      ++.
T Consensus        79 ita   81 (319)
T PTZ00117         79 ITA   81 (319)
T ss_pred             ECC
Confidence            998

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.72  E-value=0.00014  Score=66.93  Aligned_cols=71  Identities=11%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec-cC------chhh-hcCCCEEEEeeCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDvI~lav~~   81 (276)
                      |+|.|+|+|.+|..++..|.+.|+    +|+++ ++++++.+.+++ .++.+. .+      ..++ +.++|.||++++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            689999999999999999999998    99999 999999988876 555432 11      1223 6789999999987


Q ss_pred             ccHHH
Q 023866           82 QVDKA   86 (276)
Q Consensus        82 ~~~~~   86 (276)
                      +....
T Consensus        76 ~~~n~   80 (453)
T PRK09496         76 DETNM   80 (453)
T ss_pred             hHHHH
Confidence            65543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.71  E-value=5.3e-05  Score=66.42  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=48.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|+.+++.+..-|.    +|..| +|....  .   .... ..+.++++++||+|++++|-
T Consensus       145 l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Pl  207 (314)
T PRK06932        145 VRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPL  207 (314)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCC
Confidence            456899999999999999999887777    88888 876421  1   1111 34678999999999999983

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.70  E-value=8.3e-05  Score=65.28  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|+.+|+.+..-|.    +|..| +|....      .... ..+.++++++||+|++++|-
T Consensus       146 l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPl  207 (317)
T PRK06487        146 LEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP------ARPD-RLPLDELLPQVDALTLHCPL  207 (317)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc------cccc-ccCHHHHHHhCCEEEECCCC
Confidence            456899999999999999999987787    89988 886321      1111 23678999999999999984

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=97.70  E-value=0.0086  Score=50.48  Aligned_cols=162  Identities=14%  Similarity=0.186  Sum_probs=96.6

Q ss_pred             CceeccCchhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHc---C--CCcEEEEecCc
Q 023866           58 GVKVLSDNNAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWT---G--HSRFIRVMPNT  131 (276)
Q Consensus        58 g~~~~~~~~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l---~--~~~vv~~~p~~  131 (276)
                      |+.+++|..|+++++|++|+-+|-.. -..+++++.. .+ +...++...-.+ +.-.+...|   +  +..+..+||..
T Consensus       128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~-~i-pEgAII~~tCTI-pt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFAD-DI-KEGAIVTHACTI-PTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHh-hC-CCCCEEeccccC-CHHHHHHHHHHhCcccCCeeccCCCC
Confidence            67778888999999999999997543 2444444410 00 002233333344 443333333   2  34566666642


Q ss_pred             -cccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---H-HHcCCC
Q 023866          132 -PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---G-VAAGLP  205 (276)
Q Consensus       132 -~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~-~~~Gl~  205 (276)
                       |..-  |...+. -.-.++|+.+++.++.+..|+. +.+..+....+.-+++   +..+....++.+.   + +-.|-|
T Consensus       205 VPgt~--Gq~~i~-egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS---~VTAv~~aGiL~Y~~~~tqIlgAP  278 (342)
T PRK00961        205 VPEMK--GQVYIA-EGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCS---AVTAIVYAGILAYRDAVTQILGAP  278 (342)
T ss_pred             CCCCC--Cceecc-cccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCc
Confidence             2221  332222 1235789999999999999976 7777665554444332   2222233333332   2 357889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Q 023866          206 RELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       206 ~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      .+.+.+.+..++...+.+++.+|
T Consensus       279 ~~mie~qa~eaL~tmasLme~~G  301 (342)
T PRK00961        279 ADFAQMMADEALTQITALMREEG  301 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99898999999999899987655

>PRK04148 hypothetical protein; Provisional

Probab=97.68  E-value=0.00034  Score=53.06  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----ccCchhhhcCCCEEEEeeCccc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      +.+||..||+| -|..++..|.+.|+    +|+++ |.+++..+.+++.++.+     ++.+.+.-+++|+|.-.=||..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e   89 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD   89 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence            34789999999 99889999999999    99999 99999999888866543     3345577789999998888877


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      +..-+.++
T Consensus        90 l~~~~~~l   97 (134)
T PRK04148         90 LQPFILEL   97 (134)
T ss_pred             HHHHHHHH
Confidence            65544444

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.67  E-value=0.00014  Score=54.48  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcC--ce-e---ccCchhh-hcCCCEEEEeeCcc
Q 023866           12 ILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V---LSDNNAV-VEYSDVVVFSVKPQ   82 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~aDvI~lav~~~   82 (276)
                      ||+|||+ |.+|..++..|.+. ++    ++...+++++++.+.+...+  +. .   ..+..+. ..++|+||+|+|+.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~   76 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG   76 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence            6999995 99999999998884 55    66644366554444443321  21 0   1111111 24899999999999


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      ...+++..+
T Consensus        77 ~~~~~~~~~   85 (122)
T smart00859       77 VSKEIAPLL   85 (122)
T ss_pred             HHHHHHHHH
Confidence            877766543

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.67  E-value=0.00037  Score=57.14  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDvI~lav~~~~   83 (276)
                      .+.++|.|||.|.+|...++.|++.|.    +|+++ +++. +.+..+...+ +.....  ..+.+.++|+||.|+....
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence            357899999999999999999999998    99999 8764 2334444433 332111  1234678999999998887


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      +...+.+.
T Consensus        83 lN~~i~~~   90 (202)
T PRK06718         83 VNEQVKED   90 (202)
T ss_pred             HHHHHHHH
Confidence            76665544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.67  E-value=0.00014  Score=59.26  Aligned_cols=70  Identities=23%  Similarity=0.315  Sum_probs=53.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----Cce--ec--cC---chhhhcCCCEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SD---NNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~--~~--~~---~~~~~~~aDvI   75 (276)
                      +.+++.|+|. |.+|..++..|.+.|+    +|+++ +|++++++.+.+ .    +..  ..  .+   ..+.+.++|+|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diV  101 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVV  101 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEE
Confidence            4579999996 9999999999999988    99999 999998877654 1    222  11  11   13567889999


Q ss_pred             EEeeCccc
Q 023866           76 VFSVKPQV   83 (276)
Q Consensus        76 ~lav~~~~   83 (276)
                      |.+++...
T Consensus       102 i~at~~g~  109 (194)
T cd01078         102 FAAGAAGV  109 (194)
T ss_pred             EECCCCCc
Confidence            99987554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.66  E-value=0.00016  Score=63.22  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=48.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH-c---C---ceeccCchhhhcCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-I---G---VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-~---g---~~~~~~~~~~~~~aDvI~la   78 (276)
                      .+||+|||+|++|.+++..|...+.  ..++.++ |+++++++-    +.. .   .   +..+.+.+ .+++||+||++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvit   78 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVT   78 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEEC
Confidence            4699999999999999999988876  4578999 998766532    222 1   1   22234544 48999999997


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        79 a   79 (312)
T cd05293          79 A   79 (312)
T ss_pred             C
Confidence            6

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.66  E-value=6.1e-05  Score=62.34  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=53.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccCchhhhc--CCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDvI~lav~~~   82 (276)
                      ...+|+|||+|.+|..++..+.  ..|+    ++..++|+++++..... .|..+  ..+..+.++  +.|++++|+|+.
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~  157 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE  157 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence            4578999999999999988632  4465    77654488876653211 23322  234455554  499999999998


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      ...++...+
T Consensus       158 ~~~~i~~~l  166 (213)
T PRK05472        158 AAQEVADRL  166 (213)
T ss_pred             hHHHHHHHH
Confidence            877776655

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=97.65  E-value=0.0048  Score=52.05  Aligned_cols=163  Identities=13%  Similarity=0.172  Sum_probs=97.0

Q ss_pred             CceeccCchhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHH---cC--CCcEEEEecCc
Q 023866           58 GVKVLSDNNAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEW---TG--HSRFIRVMPNT  131 (276)
Q Consensus        58 g~~~~~~~~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~---l~--~~~vv~~~p~~  131 (276)
                      |+.+++|..|+++++|++|+-+|-.. -..+++++.. .+ +...++...-.+ +.-.+.+.   ++  +..+..+||..
T Consensus       126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~-~l-pEgAII~~tCTI-pt~~ly~ilE~l~R~DvgVsS~HPaa  202 (340)
T TIGR01723       126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFID-DI-PEGAIVTHACTI-PTTKFAKIFEDLGREDLNVTSYHPGC  202 (340)
T ss_pred             CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHh-hC-CCCCEEeccccC-ChHHHHHHHHhhCcccCCeeccCCCC
Confidence            67778888999999999999997543 2444444410 00 002233333344 44333332   22  35566677653


Q ss_pred             cccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---H-HHcCCCH
Q 023866          132 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---G-VAAGLPR  206 (276)
Q Consensus       132 ~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~-~~~Gl~~  206 (276)
                      -.....+..++  -.-.++|+.+++.++.+..|+. +.+..+....+.-+++   +..+....++.+.   + +-.|-|.
T Consensus       203 VPgt~~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS---~VTAv~~aGiL~Y~~~~t~IlgAP~  277 (340)
T TIGR01723       203 VPEMKGQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCS---AVTAIVYAGLLAYRDAVTKILGAPA  277 (340)
T ss_pred             CCCCCCceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            22112223322  2235899999999999999976 7777665554444332   2222233333332   2 3578899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 023866          207 ELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       207 ~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      +.+.+.+..++...+.+++.+|
T Consensus       278 ~miq~qa~eaL~tmasLme~~G  299 (340)
T TIGR01723       278 DFAQMMADEALTQIHNLMEEKG  299 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9888899999998898887655

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.61  E-value=0.00015  Score=53.98  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             CeEEEEc----ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG----~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++|+|||    -+..|..+.+.|.+.|+    +|+.. +.+.+..     .|...+.+..|.-...|++++++|++.+.+
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~   70 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE   70 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence            4799999    69999999999999998    99988 6654221     588888888874478999999999999999


Q ss_pred             HHHHHhhcc
Q 023866           87 AVITEEAFG   95 (276)
Q Consensus        87 vl~~~~~~~   95 (276)
                      +++++.+.|
T Consensus        71 ~v~~~~~~g   79 (116)
T PF13380_consen   71 IVDEAAALG   79 (116)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999885433

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00011  Score=63.04  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDK   85 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~   85 (276)
                      .+.++|+|||. |.||.+|+..|.++|+    .|++| ....              .+..+.+++||+||.|+. |..+.
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v~  216 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFVT  216 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccCC
Confidence            34689999999 9999999999999998    99999 5321              146677899999999995 44444


Q ss_pred             H
Q 023866           86 A   86 (276)
Q Consensus        86 ~   86 (276)
                      +
T Consensus       217 ~  217 (284)
T PRK14179        217 K  217 (284)
T ss_pred             H
Confidence            3

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.59  E-value=0.00016  Score=57.41  Aligned_cols=56  Identities=14%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|.|||+|.| |..+++.|.+.|.    +|+++ +|+.+              +..+.+.++|+||.|++..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~   98 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKP   98 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCC
Confidence            46789999999998 8889999999887    89999 88742              3345688999999999754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK15076 alpha-galactosidase; Provisional

Probab=97.59  E-value=0.00027  Score=64.58  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             CCeEEEEcccHHHHHHHH--HHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866           10 SFILGFIGAGKMAESIAK--GVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~--~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI   75 (276)
                      ++||+|||+|.||.+.+.  .+....-+...+|.++ |+++++++....        .+    +..++|..+++++||+|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfV   79 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYV   79 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEE
Confidence            379999999999966655  5542111233489999 999988763221        22    23355657889999999


Q ss_pred             EEeeCc
Q 023866           76 VFSVKP   81 (276)
Q Consensus        76 ~lav~~   81 (276)
                      |.++..
T Consensus        80 v~ti~v   85 (431)
T PRK15076         80 INAIQV   85 (431)
T ss_pred             eEeeee
Confidence            999854

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.59  E-value=0.00024  Score=62.05  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH----c---CceeccCchhhhcCCCEEEEee
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----I---GVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~---g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      ||+|||+|++|+++|..|+..+..  .++.++ |+++++++    .|..    .   .+.+.....+.+++||+||++.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLF--SEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA   76 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence            799999999999999999888763  489999 99876543    2222    1   2334334457789999999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.56  E-value=0.0002  Score=65.43  Aligned_cols=69  Identities=23%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      |...+|.|||.|.+|.++|..|.+.|+    +|+++ |++++..+......-...........++|++|.+.+.
T Consensus         1 ~~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi   69 (418)
T PRK00683          1 MGLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGI   69 (418)
T ss_pred             CCCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCC
Confidence            345789999999999999999999998    89999 9876543321111001112333344779999998743

>PLN02602 lactate dehydrogenase

Probab=97.56  E-value=0.00033  Score=62.17  Aligned_cols=66  Identities=18%  Similarity=0.350  Sum_probs=48.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC-ceecc-CchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG-VKVLS-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g-~~~~~-~~~~~~~~aDvI~lav   79 (276)
                      +||+|||+|++|++++..|...+.  ..++.++ |+++++++-    +..    .+ ..+.. ...+.+++||+||++-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECC
Confidence            699999999999999999988776  3479999 998876532    222    11 34432 2334489999999985

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.55  E-value=8.8e-05  Score=53.23  Aligned_cols=81  Identities=14%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHH-HhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcC--CCEEEEeeCcccH
Q 023866            9 ESFILGFIGAGKMAESIAKGV-AKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l-~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDvI~lav~~~~~   84 (276)
                      +..++.++|+|++|.+++..+ ...|+    .+...+|.++++.-  .+ .|+.+..+..++.+.  .|+-+++||+...
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a   75 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVPAEAA   75 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence            456899999999999987544 34566    55433388887543  12 477777677776655  9999999999999


Q ss_pred             HHHHHHHhhcc
Q 023866           85 KAAVITEEAFG   95 (276)
Q Consensus        85 ~~vl~~~~~~~   95 (276)
                      .++..++.+.|
T Consensus        76 ~~~~~~~~~~g   86 (96)
T PF02629_consen   76 QEVADELVEAG   86 (96)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            88888774333

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.54  E-value=0.00092  Score=58.09  Aligned_cols=90  Identities=19%  Similarity=0.310  Sum_probs=64.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh---CCCCCCCeEEEEeCCCHHHHHHHHH-cCc---eeccCchhhhcC--CCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY--SDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~--aDvI~lav   79 (276)
                      ...|+||+|+|.|++-.++.|..   ++|    .|..+++|+.+++..+++ .++   ++..+.++++++  +|+|.+++
T Consensus         5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~----~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~   80 (351)
T KOG2741|consen    5 ATIRWGIVGAGRIARDFVRALHTLPESNH----QIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYIST   80 (351)
T ss_pred             ceeEEEEeehhHHHHHHHHHhccCcccCc----EEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCC
Confidence            34689999999999999988753   244    666555999999998887 555   567888888876  49999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCC
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      |..+..+++..+.+.+    +++|-.+
T Consensus        81 ~~~qH~evv~l~l~~~----K~VL~EK  103 (351)
T KOG2741|consen   81 PNPQHYEVVMLALNKG----KHVLCEK  103 (351)
T ss_pred             CCccHHHHHHHHHHcC----CcEEecc
Confidence            8555555554442222    5566443

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.53  E-value=0.00014  Score=57.49  Aligned_cols=66  Identities=20%  Similarity=0.261  Sum_probs=50.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---Cceecc--CchhhhcCCCEEEEeeCc
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS--DNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~--~~~~~~~~aDvI~lav~~   81 (276)
                      |||+|||+ |..|+.|++-..+.||    +|+.+ -||+++.......   ...+.+  +..+.+..-|+||.+...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            79999998 9999999999999999    99999 8999987554221   111222  223667889999999843

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.53  E-value=0.00074  Score=49.94  Aligned_cols=66  Identities=23%  Similarity=0.421  Sum_probs=51.4

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCch--h-----hhcCCCEEEEeeCccc
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNN--A-----VVEYSDVVVFSVKPQV   83 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~--~-----~~~~aDvI~lav~~~~   83 (276)
                      |-|+|+|.+|..+++.|.+.+.    +|++. ++++++.+.+.+.|..+. .|..  +     -++++|.||++++.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH
Confidence            5689999999999999999776    89999 999999999998876532 2221  1     2568999999997654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.53  E-value=0.00029  Score=63.26  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec------cCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDvI~lav   79 (276)
                      ..+|.|||+|.+|...++.+...|.    +|+++ ||++++++.+.. .+..+.      .+..+.+.++|+||.++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~  238 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV  238 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence            4679999999999999999999997    89999 999999888765 443221      12345678999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.52  E-value=0.00062  Score=68.07  Aligned_cols=81  Identities=20%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCeEEEEeCCCHHHHHHHHH-c-Cc---ee-ccCchhh---hc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-GV---KV-LSDNNAV---VE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~----------~~~V~v~~~r~~~~~~~l~~-~-g~---~~-~~~~~~~---~~   70 (276)
                      ++||+|||+|.||+..+..|.+...+.          ...|++. |+++++++.+.+ . ++   .+ ..+.+++   ++
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            679999999999999999998653211          0137788 999999888776 3 52   33 3444444   36


Q ss_pred             CCCEEEEeeCcccHHHHHHHH
Q 023866           71 YSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        71 ~aDvI~lav~~~~~~~vl~~~   91 (276)
                      ++|+|+.|+|+....++....
T Consensus       648 ~~DaVIsalP~~~H~~VAkaA  668 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKAC  668 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHH
Confidence            799999999998766666554

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.51  E-value=0.00061  Score=54.51  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ||.|||+|.||+.++..|.+.|.   .+++++ |.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence            68999999999999999999997   358888 7664

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.49  E-value=0.00022  Score=60.97  Aligned_cols=66  Identities=21%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c--C--ceeccCchhhhcCCCEEEEee
Q 023866           13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |+|||+ |.||..++..|...|.....+|.++ |+++++++....       .  .  +..++|..+.+++||+||++.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence            689999 9999999999998882223489999 998876543221       1  2  233445568889999999976

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00066  Score=58.35  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c---Cc--eec-cCchhhhcCCCEEEEe
Q 023866            6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVL-SDNNAVVEYSDVVVFS   78 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~--~~~-~~~~~~~~~aDvI~la   78 (276)
                      ......++.|+|+|.++.+++..|.+.|.   .+|+|+ +|+.+++++|.+ .   +.  ... ....+...++|+||=+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINa  197 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINA  197 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEEC
Confidence            33345789999999999999999999995   389999 999999998876 2   21  111 1111222268999999


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      ||.
T Consensus       198 Tp~  200 (283)
T COG0169         198 TPV  200 (283)
T ss_pred             CCC
Confidence            874

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.42  E-value=0.00094  Score=54.77  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...||.|||+|.+|+.++..|...|.   .+++++ |++
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence            35789999999999999999999996   478888 776

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.41  E-value=0.00095  Score=54.63  Aligned_cols=35  Identities=17%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...||+|||+|.||+.++..|.+.|+   .+++++ |++
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence            45789999999999999999999997   368888 877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.41  E-value=0.00031  Score=56.28  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=49.7

Q ss_pred             EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----c---CchhhhcCCCEEEEeeCc
Q 023866           13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDvI~lav~~   81 (276)
                      |.|+|+ |.+|..+++.|++.|+    +|++. .|++++.+.  ..++++.    .   +..++++++|.||.++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            678996 9999999999999998    99999 899998877  4455432    1   234567799999999963

...

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.40  E-value=0.00045  Score=62.30  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             CeEEEEcccHHHHHH-HHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---ecc-----------------Cchh--
Q 023866           11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VLS-----------------DNNA--   67 (276)
Q Consensus        11 ~kIgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~~~-----------------~~~~--   67 (276)
                      |||.++|+|+||++. ...|.++|+    +|++. +++++..+.+.+.|.-   +..                 +..+  
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~   75 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI   75 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence            689999999999865 666677887    99999 9998999998876531   100                 1111  


Q ss_pred             -hhcCCCEEEEeeCcccHHHHHHHH
Q 023866           68 -VVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        68 -~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                       .+.++|+|+++|++...+++...+
T Consensus        76 ~~~~~~dlvt~~v~~~~~~s~~~~l  100 (381)
T PRK02318         76 EAIAEADLVTTAVGPNILPFIAPLI  100 (381)
T ss_pred             HHhcCCCEEEeCCCcccchhHHHHH
Confidence             234789999999988766665554

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.39  E-value=0.00053  Score=61.94  Aligned_cols=76  Identities=20%  Similarity=0.314  Sum_probs=53.5

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----Ccee----ccC---chhhhcCCCEEEEeeCc
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKV----LSD---NNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~----~~~---~~~~~~~aDvI~lav~~   81 (276)
                      |.|+|+|.+|+.+++.|.+.+.  ..+|++. +|+.++++.+.+.    .+..    ..+   ..++++++|+||-|++|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            7899999999999999988753  1278899 9999999888651    2221    112   34568899999999998


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ..-..+++..
T Consensus        78 ~~~~~v~~~~   87 (386)
T PF03435_consen   78 FFGEPVARAC   87 (386)
T ss_dssp             GGHHHHHHHH
T ss_pred             chhHHHHHHH
Confidence            8656665544

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.38  E-value=0.00071  Score=47.40  Aligned_cols=46  Identities=24%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ...++++|+|+|.+|..++..|.+.+.   .+|++| +|                          |++|.+++...
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~   66 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGV   66 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCC
Confidence            356799999999999999999998842   389999 88                          99999996543

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.34  E-value=0.00051  Score=62.82  Aligned_cols=71  Identities=20%  Similarity=0.357  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC--------CCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~   76 (276)
                      |++.|||+||+|.+|+.+++.|.+.        |.  .-+|. ++ +|++++.+.+...+...+++..+++.  +.|+|+
T Consensus         1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVv   77 (426)
T PRK06349          1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVV   77 (426)
T ss_pred             CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEE
Confidence            3468999999999999999877543        21  11443 55 88877654332234456677778775  479999


Q ss_pred             EeeCc
Q 023866           77 FSVKP   81 (276)
Q Consensus        77 lav~~   81 (276)
                      .++++
T Consensus        78 e~tg~   82 (426)
T PRK06349         78 ELMGG   82 (426)
T ss_pred             ECCCC
Confidence            99865

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.33  E-value=0.00077  Score=63.92  Aligned_cols=69  Identities=10%  Similarity=0.309  Sum_probs=55.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCc--hhh-----hcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDvI~lav~~   81 (276)
                      +-+|-|+|+|++|+.+++.|.+.|+    +++++ |+|+++.+++++.|..+ ..|.  .++     ++++|.+++++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence            3679999999999999999999999    99999 99999999998877653 2221  221     4689999999876


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      +.
T Consensus       492 ~~  493 (558)
T PRK10669        492 GY  493 (558)
T ss_pred             hH
Confidence            53

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.32  E-value=0.0009  Score=59.25  Aligned_cols=78  Identities=12%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---------------------HHHH----HHHH--cCcee-
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV-   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~--~g~~~-   61 (276)
                      ..+|.|||+|.+|+.++..|.++|+   .+++++ |++.                     .|++    .+++  .++.+ 
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            5789999999999999999999997   478888 8763                     1222    2322  23322 


Q ss_pred             -c------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           62 -L------SDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        62 -~------~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                       .      .+..++++++|+||.|+.....+-++.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~  136 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDL  136 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence             1      12346678999999999766665555544

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.31  E-value=0.00062  Score=59.39  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=45.0

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----c--Ccee--ccCchhhhcCCCEEEEee
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDvI~lav   79 (276)
                      |+|||+|.||..++..+...|+ .  +|+++ |+++++.+.    +.+    .  ...+  +.+ .+.+++||+||+++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l-~--eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~   74 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKEL-G--DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCC-c--EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEec
Confidence            6899999999999999888775 2  89999 998775431    111    1  1222  234 45589999999987

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.30  E-value=0.00064  Score=59.65  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH--HHHH--cCcee--ccCc---hhhhcCCCE
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDV   74 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDv   74 (276)
                      |.-.++.||+|||+ |++|+.++..|...+.  ..++.++ |++....+  ++.+  ....+  .++.   .+.+++||+
T Consensus         3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDv   79 (321)
T PTZ00325          3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADL   79 (321)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCE
Confidence            44457889999999 9999999999986664  3488999 88432221  2222  12222  2221   567899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++.
T Consensus        80 VVita   84 (321)
T PTZ00325         80 VLICA   84 (321)
T ss_pred             EEECC
Confidence            99987

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.27  E-value=0.00088  Score=59.53  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc-e-eccCch-hhhcCCCEEEEeeC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV-K-VLSDNN-AVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~-~-~~~~~~-~~~~~aDvI~lav~   80 (276)
                      |+||+|||+ |.+|..+++.|.+..   ..++...++|+ +..+.+.+     .+. . ...+.. ....++|+||+|+|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p---~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP   77 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHP---EVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP   77 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCC---CceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence            479999997 999999999988652   12665442643 22222222     111 0 122222 24467999999999


Q ss_pred             cccHHHHHHHHh
Q 023866           81 PQVDKAAVITEE   92 (276)
Q Consensus        81 ~~~~~~vl~~~~   92 (276)
                      +....++...+.
T Consensus        78 ~~~~~~~v~~a~   89 (343)
T PRK00436         78 HGVSMDLAPQLL   89 (343)
T ss_pred             cHHHHHHHHHHH
Confidence            998888877763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.24  E-value=0.002  Score=53.18  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...+|.|||+|.+|+.++..|.+.|.   .+++++ |.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence            35789999999999999999999997   368888 776

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.23  E-value=0.0019  Score=56.63  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccCchhhhc----CCCEEEEeeCccc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE----YSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~----~aDvI~lav~~~~   83 (276)
                      ..+|+|+|+|.+|..-.+-....|.    +|+++ +|++++.+.+++.|...  .....+..+    .+|+|+.++++..
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~  241 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT  241 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence            4689999999999866665555787    99999 99999999999988652  211222222    3999999999667


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      +...+.-+
T Consensus       242 ~~~~l~~l  249 (339)
T COG1064         242 LEPSLKAL  249 (339)
T ss_pred             HHHHHHHH
Confidence            77777665

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.22  E-value=0.00075  Score=58.84  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=47.2

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c-C-ceec-cCchhhhcCCCEEEEee
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-G-VKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-g-~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      |+|||+|.+|++++..|...|..  .+++++ |+++++++....       . . ..+. .+..+.+++||+||++.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita   74 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence            68999999999999999888852  389999 998887654332       1 1 1221 22246789999999998

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.21  E-value=0.00076  Score=53.48  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhc--CCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDvI~lav~~~   82 (276)
                      ++-++.+||+|++|.+++..-.  +.|+    +|...+|.++++.-.-. .++.+.  ++.+..++  +.|+.+||||..
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~FDv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa~  157 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAFDVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPAE  157 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEecCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence            5678999999999999987532  4555    66533399887542111 234432  33444455  689999999998


Q ss_pred             cHHHHHHHHh
Q 023866           83 VDKAAVITEE   92 (276)
Q Consensus        83 ~~~~vl~~~~   92 (276)
                      ...++...+.
T Consensus       158 ~AQ~vad~Lv  167 (211)
T COG2344         158 HAQEVADRLV  167 (211)
T ss_pred             HHHHHHHHHH
Confidence            8888887774

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.20  E-value=0.002  Score=61.68  Aligned_cols=69  Identities=16%  Similarity=0.280  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCc--hhh-----hcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDvI~lav~~   81 (276)
                      ..+|-|+|+|.+|..+++.|.+.|+    ++++. |.|+++.+.+++.|..+ ..|.  .+.     +++||.+++++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d  474 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE  474 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence            4689999999999999999999998    99999 99999999998877653 2221  221     5689999999987


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      +.
T Consensus       475 ~~  476 (601)
T PRK03659        475 PE  476 (601)
T ss_pred             HH
Confidence            54

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.19  E-value=0.0015  Score=60.45  Aligned_cols=65  Identities=15%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      +.+||.|||+|..|.+.|..|.+.|+    +|+++ |+.+.....+.+.|+.......+.+.++|+||.+
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s   72 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS   72 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence            45789999999999999999999999    99999 9776555556667776533222335689999974

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.19  E-value=0.0021  Score=46.63  Aligned_cols=73  Identities=11%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +.++|.|||.|.+|..=++.|++.|-    +|+++ .++.+..+    ..++.. ....+.++++|+||.++.+..+.+-
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~   76 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEA   76 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHH
Confidence            56899999999999999999999998    99999 77651111    222221 2233557889999999987765544


Q ss_pred             HHH
Q 023866           88 VIT   90 (276)
Q Consensus        88 l~~   90 (276)
                      +.+
T Consensus        77 i~~   79 (103)
T PF13241_consen   77 IYA   79 (103)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.14  E-value=0.0015  Score=54.57  Aligned_cols=64  Identities=19%  Similarity=0.327  Sum_probs=50.5

Q ss_pred             EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceec-------cCchhhhcCCCEEEEeeCc
Q 023866           13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav~~   81 (276)
                      |.|+|+ |.+|+.++..|++.++    +|.+. .|++  +..+.+...|+.+.       .+..++++++|.||+++++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            789986 9999999999999998    99988 7775  34667777887642       1233567899999999983

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.14  E-value=0.001  Score=57.78  Aligned_cols=66  Identities=20%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH------cCceecc-CchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDvI~lav   79 (276)
                      +||+|||+|++|++++..|...++  ..++.++ |+++++.+    .|.+      ....+.. ...+.++++|+|+++-
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            699999999999999999977765  2389999 99855432    2222      1233333 2346689999999987

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.12  E-value=0.0023  Score=59.28  Aligned_cols=70  Identities=19%  Similarity=0.313  Sum_probs=52.7

Q ss_pred             CCCCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceec-cCchhhhcCCCEEEEee
Q 023866            5 PIPAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      |+-.+.++|.|||+|..|.+ +|+.|.+.|+    +|+++ |.++. ..+.+.+.|+.+. ....+.+.++|+||.+-
T Consensus         2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp   74 (461)
T PRK00421          2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS   74 (461)
T ss_pred             CCcCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence            33445678999999999999 8999999999    99999 86542 3445666787754 23344567899999864

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.11  E-value=0.0014  Score=58.25  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-c----C---ceec-cCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      +||+|||+ |.+|..+++.|.+.   +..++. ++ +++++.-+.+.+ .    +   ..+. .+..+..+++|+||+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h---P~~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH---PEVEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC---CCceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence            58999998 99999999988754   223666 54 544322222222 1    2   1121 13345556899999999


Q ss_pred             CcccHHHHHHHHh
Q 023866           80 KPQVDKAAVITEE   92 (276)
Q Consensus        80 ~~~~~~~vl~~~~   92 (276)
                      |.....++...+.
T Consensus        77 P~~~s~~~~~~~~   89 (346)
T TIGR01850        77 PHGVSAELAPELL   89 (346)
T ss_pred             CchHHHHHHHHHH
Confidence            9988888887763

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.10  E-value=0.0019  Score=57.98  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCeEEE----EeCCCHHHHHHHH----H------cCceeccCchhhhcCCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~-~~~V~v----~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~aD   73 (276)
                      ..||+|||+ |++|.+++..|...+.+. .++|.+    + |++.++++-..    +      .++.+..+..+.+++||
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD  122 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD  122 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence            489999999 999999999999888754 223554    4 88887764322    1      13444455667789999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||++-
T Consensus       123 IVVitA  128 (387)
T TIGR01757       123 WALLIG  128 (387)
T ss_pred             EEEECC
Confidence            999975

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.10  E-value=0.0022  Score=59.52  Aligned_cols=69  Identities=26%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-HHcCceecc--CchhhhcCCCEEEEe--eCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDvI~la--v~~~   82 (276)
                      ..+||.|+|+|..|.+++..|.+.|+    +|+++ |+++.....+ .+.|+.+..  ...+.+.++|+||.+  +|+.
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~   87 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD   87 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence            35789999999999999999999998    99999 9877655443 346876542  234446789999986  4554

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.07  E-value=0.003  Score=60.60  Aligned_cols=69  Identities=14%  Similarity=0.276  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC--chh-----hhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD--NNA-----VVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~--~~~-----~~~~aDvI~lav~~   81 (276)
                      ..+|-|+|+|++|..+++.|.+.|+    ++++. |.|+++++.+++.|..+. .|  ..+     -++++|.+++++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d  474 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD  474 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence            4689999999999999999999998    99999 999999999988876532 22  122     24589999999976


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      +.
T Consensus       475 ~~  476 (621)
T PRK03562        475 PQ  476 (621)
T ss_pred             HH
Confidence            54

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.07  E-value=0.0029  Score=58.91  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-H----HHHHHHcCceecc-CchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLS-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~----~~~l~~~g~~~~~-~~~~~~~~aDvI~lav   79 (276)
                      +.++|.|||.|..|.++|..|.+.|+    +|+++ |+++. .    .+.+++.|+.+.. +..+...++|+||++.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~   86 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP   86 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence            35789999999999999999999998    99999 86542 2    3446567877542 2222345799999986

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.07  E-value=0.0018  Score=57.11  Aligned_cols=67  Identities=15%  Similarity=0.326  Sum_probs=51.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cC-ceeccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +.++|.|+|+ |.||+.+++.|.+. |   +.+++++ +|++++++.+.. .+ ..+ .+..+.+.++|+||.++-
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~g---v~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTG---VAELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCC---CCEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCc
Confidence            4589999999 89999999999754 3   2489999 999998888765 22 222 245577889999998874

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.06  E-value=0.0038  Score=52.49  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-----HHHH---HcCceeccCchhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFE---SIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      ++||+|.|+ |+||+.+.+.+.+...   -++...++|.++..     ..+.   ..|+.+.++......++|++|=-+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~---~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~   78 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPD---LELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT   78 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCC---ceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC
Confidence            689999999 9999999999887652   15554337765432     1121   2456666666666788999999998


Q ss_pred             cccHHHHHHHHhhccccccCCcccCCCCcccHHHHHH---HcCCCcEEEEecCc
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE---WTGHSRFIRVMPNT  131 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~---~l~~~~vv~~~p~~  131 (276)
                      |....+.++-..+.+    .+.+-...|. +.++++.   +....+++.+ ||.
T Consensus        79 P~~~~~~l~~~~~~~----~~lVIGTTGf-~~e~~~~l~~~a~~v~vv~a-~Nf  126 (266)
T COG0289          79 PEATLENLEFALEHG----KPLVIGTTGF-TEEQLEKLREAAEKVPVVIA-PNF  126 (266)
T ss_pred             chhhHHHHHHHHHcC----CCeEEECCCC-CHHHHHHHHHHHhhCCEEEe-ccc
Confidence            888777766553222    4455555777 6655443   3333444443 554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.06  E-value=0.0011  Score=58.04  Aligned_cols=65  Identities=25%  Similarity=0.313  Sum_probs=46.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHH----HHH----cC--cee--ccCchhhhcCCCEE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDA----FES----IG--VKV--LSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~----l~~----~g--~~~--~~~~~~~~~~aDvI   75 (276)
                      |||+|||+ |.+|..++..|...|+  ..+|+++ ||++  ++++.    +.+    .+  ..+  ..+ .+.+.+||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~--~~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDV--VKEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--CCEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence            69999998 9999999999999887  2268888 8854  33321    111    22  222  234 4558999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      |+++
T Consensus        77 iita   80 (309)
T cd05294          77 IITA   80 (309)
T ss_pred             EEec
Confidence            9998

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.06  E-value=0.0023  Score=58.36  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCC-----CCeEEEEeCCCHHHHHHHH----H------cCceeccCchhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLP-----PDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~-----~~~V~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~a   72 (276)
                      +..||+|||+ |++|.+++..|...+.+.     ..++.++ |+++++++-..    +      ..+.+..+..+.+++|
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kda  177 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDA  177 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcC
Confidence            3579999999 999999999998772211     1368888 99988765322    2      1244445666778999


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||++-
T Consensus       178 DiVVitA  184 (444)
T PLN00112        178 EWALLIG  184 (444)
T ss_pred             CEEEECC
Confidence            9999976

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.05  E-value=0.0018  Score=56.79  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----cC---chhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDvI~lav~   80 (276)
                      |||.|.|+ |.+|+.+++.|++.||    +|++. .|++++...+...++.+.    .+   ..++++++|+||-++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            58999985 9999999999999999    99999 898877665555565432    12   2455788999998763

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.05  E-value=0.0035  Score=52.30  Aligned_cols=78  Identities=12%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~   68 (276)
                      +..++|+|.|.|++|+.+++.|.+.|.    +|+ +. |.          +.+.+..+++ .|       .... ++.++
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i  102 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEEL  102 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccc
Confidence            456899999999999999999999998    877 66 77          6666665554 33       1111 22222


Q ss_pred             -hcCCCEEEEeeCcccH-HHHHHHH
Q 023866           69 -VEYSDVVVFSVKPQVD-KAAVITE   91 (276)
Q Consensus        69 -~~~aDvI~lav~~~~~-~~vl~~~   91 (276)
                       -.+|||++.|.+...+ .+.+..+
T Consensus       103 ~~~~~Dvlip~a~~~~i~~~~~~~l  127 (227)
T cd01076         103 LELDCDILIPAALENQITADNADRI  127 (227)
T ss_pred             eeecccEEEecCccCccCHHHHhhc
Confidence             2379999999866543 4555555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.04  E-value=0.002  Score=53.78  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC----HHHH-------HHHHH-cCc-eeccCchhhhcCCCE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSDV   74 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aDv   74 (276)
                      .+.+||.|+|+|.+|.+++..|.+.|. +.++|+++ ||+    .++.       +.+.+ .+. ....+..+.++++|+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            355799999999999999999999886 22379999 998    4443       22322 221 111244567788999


Q ss_pred             EEEeeCcccH-HHHHHHH
Q 023866           75 VVFSVKPQVD-KAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~-~~vl~~~   91 (276)
                      ||=++++..+ +++++.+
T Consensus       101 lIgaT~~G~~~~~~l~~m  118 (226)
T cd05311         101 FIGVSRPGVVKKEMIKKM  118 (226)
T ss_pred             EEeCCCCCCCCHHHHHhh
Confidence            9999875443 3455544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.03  E-value=0.0024  Score=55.36  Aligned_cols=69  Identities=25%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---HHHHHHHH----cC--cee--c--cC---chhhhcCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES----IG--VKV--L--SD---NNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~----~g--~~~--~--~~---~~~~~~~a   72 (276)
                      +.+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|++   ++++.+.+    .+  +.+  .  .+   ..+.++.+
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~  200 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS  200 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence            45689999999999999999999997   249999 9986   66655543    11  111  1  11   12234567


Q ss_pred             CEEEEeeCc
Q 023866           73 DVVVFSVKP   81 (276)
Q Consensus        73 DvI~lav~~   81 (276)
                      |+||-++|.
T Consensus       201 DilINaTp~  209 (289)
T PRK12548        201 DILVNATLV  209 (289)
T ss_pred             CEEEEeCCC
Confidence            888888764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.02  E-value=0.0028  Score=58.40  Aligned_cols=68  Identities=19%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHH----HHHHHcCceec--cCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDvI~lav~   80 (276)
                      ++.+++.|+|.|.+|.++|..|.+.|+    +|+++ +++. +..    +++.+.|+.+.  ....+....+|+||.++-
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            356899999999999999999999999    99999 8874 333    34444566542  223344567999999873

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.01  E-value=0.0045  Score=47.65  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=28.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ||.|||+|.+|+.+++.|.+.|+   .+++++ |.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence            68999999999999999999997   468888 655

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.00  E-value=0.0016  Score=57.42  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=48.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHH----HHHH------cCceeccCchhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~a   72 (276)
                      +.+||+|||+ |++|++++..|...+.+.   +.++.++ |+++.  +++    .+.+      ....+..+..+.+++|
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da   81 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA   81 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence            4579999998 999999999988776532   2368888 88542  221    2222      1234455556778999


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||++-
T Consensus        82 DiVVita   88 (326)
T PRK05442         82 DVALLVG   88 (326)
T ss_pred             CEEEEeC
Confidence            9999975

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.00  E-value=0.0023  Score=55.91  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH--HHHHHH--cCceec---cC--chhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVL---SD--NNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~---~~--~~~~~~~aDvI~lav   79 (276)
                      |||+|||+ |++|++++..|...+.  ..++.++ |++..+  +-.|.+  ....+.   .+  ..+.+++||+||++.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita   76 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA   76 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence            69999999 9999999999987775  3478898 887111  112333  112222   22  256789999999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.99  E-value=0.0034  Score=58.60  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--CchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDvI~lav   79 (276)
                      .++|.|+|+|..|.+.++.|.+.|.    +|+++ |+++++.+.+++.|+.+..  ...+.+.++|+||.+-
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp   78 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP   78 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence            4689999999999999999999998    99999 9887777666667876532  2334567899999975

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.96  E-value=0.0041  Score=47.40  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHHH----HH--cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAF----ES--IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l----~~--~g~~~~--   62 (276)
                      ..||.|+|+|.+|+.++..|.+.|.   .+++++ |.+.                   .|.+.+    .+  .++.+.  
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~   77 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAI   77 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeee
Confidence            4689999999999999999999997   467777 5432                   122222    22  233221  


Q ss_pred             ------cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                            ....+.++++|+||.|+.+...+..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~  111 (135)
T PF00899_consen   78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNE  111 (135)
T ss_dssp             ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHH
T ss_pred             ecccccccccccccCCCEEEEecCCHHHHHHHHH
Confidence                  1123556789999999876655544444

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.94  E-value=0.0028  Score=55.71  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC------------------ceeccCchhhhcCCC
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD   73 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD   73 (276)
                      |||+|+|.+|...++.+.+..   .-+|..++|.++++...+.. .|                  +.+..+++++..++|
T Consensus         1 VaInG~GrIGr~varav~~~~---d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD   77 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQD---DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD   77 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCC---CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence            699999999999999987532   12666544888876555443 22                  333456778888999


Q ss_pred             EEEEeeCcc
Q 023866           74 VVVFSVKPQ   82 (276)
Q Consensus        74 vI~lav~~~   82 (276)
                      +|+.|+|..
T Consensus        78 iVve~Tp~~   86 (333)
T TIGR01546        78 IVVDATPGG   86 (333)
T ss_pred             EEEECCCCC
Confidence            999999754

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.0038  Score=57.80  Aligned_cols=65  Identities=15%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceec--cCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVL--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav   79 (276)
                      .+||+|+|.|.-|.++++.|.+.|+    +|+++ |+++.     ..+++.+.|+.+.  ....+.+.++|+||.+.
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp   85 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP   85 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence            4789999999999999999999999    99999 87642     2245666787653  22335467899999973

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.94  E-value=0.0029  Score=54.62  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----Cc---eecc--CchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDvI~la   78 (276)
                      +.+++.|+|+|..|++++..|.+.|.   .+|+++ +|++++++.+.+.     +.   ....  +..+...++|+||=+
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa  201 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA  201 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence            34689999999999999999999886   479999 9999999888651     21   1111  112234567888877


Q ss_pred             eC
Q 023866           79 VK   80 (276)
Q Consensus        79 v~   80 (276)
                      +|
T Consensus       202 Tp  203 (283)
T PRK14027        202 TP  203 (283)
T ss_pred             CC
Confidence            76

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.93  E-value=0.0016  Score=57.23  Aligned_cols=68  Identities=15%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHHH--HH----HHHH------cCceeccCchhhhcCCCE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDv   74 (276)
                      +||+|||+ |++|.+++..|...+...   +.++.++ |++++.  ++    .+.+      ..+.+..+..+.+++||+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi   81 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW   81 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence            69999999 999999999998877632   1267888 885322  22    2222      123444555677899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++-
T Consensus        82 vvita   86 (322)
T cd01338          82 ALLVG   86 (322)
T ss_pred             EEEeC
Confidence            99986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.93  E-value=0.0059  Score=56.26  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=54.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--Ccee-ccCc--h-----hhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN--N-----AVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~-~~~~--~-----~~~~~aDvI~la   78 (276)
                      .+++|-|+|+|.+|..+++.|.+.|+    +|+++ ++++++.+.+.+.  +..+ ..|.  .     .-++++|.||++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~  304 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL  304 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence            46889999999999999999999898    99999 9999999888763  4432 2222  1     225689999988


Q ss_pred             eCccc
Q 023866           79 VKPQV   83 (276)
Q Consensus        79 v~~~~   83 (276)
                      ++.+.
T Consensus       305 ~~~~~  309 (453)
T PRK09496        305 TNDDE  309 (453)
T ss_pred             CCCcH
Confidence            87654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.93  E-value=0.0046  Score=53.54  Aligned_cols=68  Identities=21%  Similarity=0.248  Sum_probs=48.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---HHHHHHHH-c----C--ceeccCc------hhhhcCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a   72 (276)
                      +.+++.|||+|..+++++..|.+.|.   .+|+++ +|++   ++++.+.+ .    +  +... +.      .+.+.++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a  197 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVT-DLADQQAFAEALASA  197 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEEe-chhhhhhhhhhcccC
Confidence            44689999999999999999988775   489999 9994   57776654 2    1  1221 11      1234578


Q ss_pred             CEEEEeeCc
Q 023866           73 DVVVFSVKP   81 (276)
Q Consensus        73 DvI~lav~~   81 (276)
                      |+||-|+|.
T Consensus       198 DivINaTp~  206 (288)
T PRK12749        198 DILTNGTKV  206 (288)
T ss_pred             CEEEECCCC
Confidence            999888875

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.93  E-value=0.0025  Score=56.39  Aligned_cols=81  Identities=12%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHHcC--ceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIG--VKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~~g--~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ++++||+|+|+ |..|.-+.+.|.+.+| +..++....++  ++.. .+.-.|  ..+.....+..+++|++|+|+|+..
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~   78 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLASS--ESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAV   78 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEECc--ccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHH
Confidence            34589999998 9999999999987776 43454444122  2211 111112  2222111222478999999999877


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..++...+
T Consensus        79 s~~~v~~~   86 (336)
T PRK05671         79 SRSFAEKA   86 (336)
T ss_pred             HHHHHHHH
Confidence            77776665

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.92  E-value=0.0038  Score=53.60  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=49.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .++.|+|+|..+.+++..|.+.|.   .+|+++ +|++++.+.+.+ .+.....+.  ....+|+||=|+|.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~  188 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI  188 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence            489999999999999999998886   369999 999999988876 333221111  12458999988874

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.91  E-value=0.0032  Score=58.03  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=63.4

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      -++|+|||+    |++|..+.++|.+.||  ..+|+.+ +++.+.     -.|+.++.+..++-...|+++++||++.+.
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~   78 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKYVP   78 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHHHH
Confidence            378999999    8999999999999997  2357766 655331     258888888888877899999999999999


Q ss_pred             HHHHHHhhccc
Q 023866           86 AAVITEEAFGF   96 (276)
Q Consensus        86 ~vl~~~~~~~~   96 (276)
                      ++++++.+.|.
T Consensus        79 ~~l~e~~~~gv   89 (447)
T TIGR02717        79 QVVEECGEKGV   89 (447)
T ss_pred             HHHHHHHhcCC
Confidence            99998854443

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.91  E-value=0.0029  Score=55.65  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCH--HHHH----HHHH------cCceeccCchhhhcCCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~aD   73 (276)
                      -.||+|||+ |++|++++..|...+...   ..++.++ |+++  ++++    .+.+      .+..+..+..+.+++||
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD   81 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD   81 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence            379999998 999999999998877521   1268888 8854  2222    2222      12334345557789999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||++-
T Consensus        82 vVVitA   87 (323)
T TIGR01759        82 AALLVG   87 (323)
T ss_pred             EEEEeC
Confidence            999986

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.91  E-value=0.0053  Score=54.44  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---------------------HHHH----HHHHc--Ccee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFESI--GVKV   61 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~~--g~~~   61 (276)
                      ...||.|||+|.+|+.++..|.++|.   .+|+++ |.+.                     .|++    .+++.  .+.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            35789999999999999999999997   478888 7752                     1222    22221  2221


Q ss_pred             --c------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           62 --L------SDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        62 --~------~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                        .      .+..+.++++|+||.|+.....+..+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~  136 (339)
T PRK07688         99 EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDA  136 (339)
T ss_pred             EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence              1      11235678899999999766555555444

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.88  E-value=0.0088  Score=55.71  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=41.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ..||.|||+|.+|..-+..+...|-    +|+++ |+++++++..++.|.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~  210 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAE  210 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCe
Confidence            5799999999999998888888887    89999 9999999999888876

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.87  E-value=0.0056  Score=50.73  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----------HHHHHHHHc-Cceecc-----Cchhh-h
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVLS-----DNNAV-V   69 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------~~~~~l~~~-g~~~~~-----~~~~~-~   69 (276)
                      .++.++|+|.|+|++|+.+++.|.+.|.   ..|.++ |.+.          +.++..++. ++....     +..++ -
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG   95 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence            3467899999999999999999999986   134566 8887          666655543 222111     11222 2


Q ss_pred             cCCCEEEEeeCcccH-HHHHHHH
Q 023866           70 EYSDVVVFSVKPQVD-KAAVITE   91 (276)
Q Consensus        70 ~~aDvI~lav~~~~~-~~vl~~~   91 (276)
                      .+||++|.|.....+ .+...++
T Consensus        96 ~~~DVlipaA~~~~i~~~~a~~l  118 (217)
T cd05211          96 LDVDIFAPCALGNVIDLENAKKL  118 (217)
T ss_pred             ccccEEeeccccCccChhhHhhc
Confidence            379999999876643 3444444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.86  E-value=0.011  Score=52.54  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=90.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----c-Cc-e-------------------eccC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-GV-K-------------------VLSD   64 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g~-~-------------------~~~~   64 (276)
                      |.+|-|+|.|..+--+|..+.+.+.   .+|-+. +|...|.+++.+    . +. .                   +..+
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~   76 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQD   76 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcC
Confidence            4689999999999999998876553   368888 887777665443    1 10 0                   1234


Q ss_pred             chhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCC--cccCCCCcc-cHHH-HHHHcCCCcEEEEec----------C
Q 023866           65 NNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRS--EIERPSGLQ-RWSR-WVEWTGHSRFIRVMP----------N  130 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~--~l~~~~g~~-~~~~-l~~~l~~~~vv~~~p----------~  130 (276)
                      .+++..+-|.+|+|||.++..+|+.++....+..-+.  ++++.=|.. -++. +.+.-++..++.+-.          .
T Consensus        77 ~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~  156 (429)
T PF10100_consen   77 YEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE  156 (429)
T ss_pred             HHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence            5667778899999999999999999883111111111  224432220 1122 222212344554321          1


Q ss_pred             ccccc-cCcc--eEeecCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866          131 TPSAV-GEAA--TVMSLGGTATEEDGELIGKLFGSVGKI-WRA  169 (276)
Q Consensus       131 ~~~~~-~~g~--~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~  169 (276)
                      .|..+ -.|+  .++.++...+.....++..+|+.+|-. ..+
T Consensus       157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~  199 (429)
T PF10100_consen  157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVM  199 (429)
T ss_pred             CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEe
Confidence            11111 0111  123334455667789999999999965 444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.84  E-value=0.012  Score=48.43  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHc-Cceecc-C-chhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESI-GVKVLS-D-NNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~-g~~~~~-~-~~~~~~~aDvI~lav~~~~   83 (276)
                      .+.++|.|||.|.+|..-++.|++.|.    +|+++ +.+.. ..+.+.+. .+.... + ..+.+..+|+||.|+....
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~   81 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE   81 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence            356799999999999999999999998    99999 77653 34455554 343311 1 1344688999999987764


Q ss_pred             HH-HHHH
Q 023866           84 DK-AAVI   89 (276)
Q Consensus        84 ~~-~vl~   89 (276)
                      +. .+..
T Consensus        82 ln~~i~~   88 (205)
T TIGR01470        82 LNRRVAH   88 (205)
T ss_pred             HHHHHHH
Confidence            43 3433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases

Probab=96.79  E-value=0.015  Score=44.24  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 023866          149 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS  227 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~  227 (276)
                      +++..+.++.+++.+|.. +.+++++-..+.+-......|+..+...-.+...+.|+|.+++.+++.+.+.++.+.+.+.
T Consensus         9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~   88 (132)
T PF10728_consen    9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL   88 (132)
T ss_dssp             SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence            788999999999999975 7888876555444322223444444444445567899999999999999999999998763


Q ss_pred             CCChHHHHHhcCCCC-chHHHHHHHHHh
Q 023866          228 GKHPGQLKDDVASPG-GTTIAGIHELEK  254 (276)
Q Consensus       228 ~~~~~~l~~~v~sp~-g~t~~~l~~l~~  254 (276)
                      | .+..+...+.... ++..+.+..|++
T Consensus        89 g-~~~alTGP~~RgD~~Tv~kHl~~L~~  115 (132)
T PF10728_consen   89 G-PADALTGPAARGDIGTVAKHLAALDD  115 (132)
T ss_dssp             --HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred             C-chhccCCCcccCCHHHHHHHHHHHhc
Confidence            3 2244444443322 234555666654

; PDB: 3D1L_A 2I76_A 3DFU_A.

>PRK06153 hypothetical protein; Provisional

Probab=96.79  E-value=0.0054  Score=54.68  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---------------H-------HHHHHHHH----c--Ccee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---------------L-------KRRDAFES----I--GVKV   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---------------~-------~~~~~l~~----~--g~~~   61 (276)
                      ..+|+|||+|..|+.++..|.+.|.   .+|+++ |.+               .       .|++.+++    .  ++..
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~  251 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP  251 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence            4799999999999999999999996   467776 443               0       23333322    2  2321


Q ss_pred             -----ccCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           62 -----LSDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        62 -----~~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                           ..++.+.+.++|+||.|+.....+.++.+.
T Consensus       252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~  286 (393)
T PRK06153        252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDY  286 (393)
T ss_pred             EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence                 112334578899999999877666666544

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.78  E-value=0.0032  Score=54.81  Aligned_cols=62  Identities=24%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH------cCceeccCchhhhcCCCEEEEee
Q 023866           15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|++|.+++..|...+..  .++.++ |+++++++-    +..      ....+..+..+.+++||+||++.
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita   72 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA   72 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence            699999999999999888763  479999 998765432    222      12344445567789999999986

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.78  E-value=0.012  Score=54.70  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccC------------------------
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------   64 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~------------------------   64 (276)
                      ..|+.|+|+|.+|...+..+...|-    +|+++ ++++++.+.++..|... .-+                        
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~  238 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM  238 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence            4799999999999999998888887    89999 99999988888777553 111                        


Q ss_pred             --chhhhcCCCEEEEee-----Ccc--cHHHHHHHH
Q 023866           65 --NNAVVEYSDVVVFSV-----KPQ--VDKAAVITE   91 (276)
Q Consensus        65 --~~~~~~~aDvI~lav-----~~~--~~~~vl~~~   91 (276)
                        ..+.++++|+||.++     |..  ..++.++.+
T Consensus       239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~M  274 (511)
T TIGR00561       239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSM  274 (511)
T ss_pred             HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhC
Confidence              123457899999998     332  345555544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.77  E-value=0.0035  Score=55.18  Aligned_cols=63  Identities=17%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      .+.++|.|||+|.||...+++|.+.|.   .+|+++ +|+.+.. .+.+...    ...+...++|+||.|+
T Consensus       172 l~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~t  234 (338)
T PRK00676        172 SKKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFGS  234 (338)
T ss_pred             ccCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEcC
Confidence            356899999999999999999999986   379999 9997531 1111100    1112346889999974

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.77  E-value=0.0024  Score=51.21  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             eEEEEcccHHHHH--HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEEE
Q 023866           12 ILGFIGAGKMAES--IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus        12 kIgiIG~G~mG~~--la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~l   77 (276)
                      ||+|||+|..-.+  +..-+.....++..+|.++ |++++|++....        .|    +..++|..+++++||.||.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~   79 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN   79 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence            7999999986655  3333444444455688899 999999874332        23    3457888999999999999


Q ss_pred             eeCcccH
Q 023866           78 SVKPQVD   84 (276)
Q Consensus        78 av~~~~~   84 (276)
                      ++...-.
T Consensus        80 ~irvGg~   86 (183)
T PF02056_consen   80 QIRVGGL   86 (183)
T ss_dssp             ---TTHH
T ss_pred             Eeeecch
Confidence            9976543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PLN00106 malate dehydrogenase

Probab=96.75  E-value=0.0028  Score=55.66  Aligned_cols=67  Identities=10%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH--cCceec-----cCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL-----SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~-----~~~~~~~~~aDvI~lav   79 (276)
                      ..||+|||+ |++|+.++..|...++.  .++.++ |+++...  .++.+  ....+.     ++..+.+++||+||++.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA   94 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA   94 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence            369999999 99999999999876653  378999 9876221  12222  111221     22357789999999986

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.71  E-value=0.0063  Score=56.96  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHc--Cceecc--CchhhhcCCCEEEEe--eC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~aDvI~la--v~   80 (276)
                      +.++|.|||.|..|.++|+.|.+.|+    +|+++ |.+..  ..+.+.+.  |+.+..  ...+.+.++|+||.+  +|
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence            45789999999999999999999999    99999 86542  33456554  544322  234556789999997  45


Q ss_pred             c
Q 023866           81 P   81 (276)
Q Consensus        81 ~   81 (276)
                      +
T Consensus        81 ~   81 (498)
T PRK02006         81 P   81 (498)
T ss_pred             C
Confidence            5

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0077  Score=55.48  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH----HHHHHHHcCceec--cCchhhhcC-CCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDvI~lav   79 (276)
                      +.++|.|+|.|.+|.++++.|.+.|+    +|+++ |++..    ..+.+.+.|+.+.  .+..+...+ +|+||.+.
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence            45789999999999999999999999    99999 87642    2345556677653  234444444 89998864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.70  E-value=0.0083  Score=48.98  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..||.|||+|.+|+.++++|..+|.   .+++++ |.+
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d   54 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR   54 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence            5789999999999999999999997   467787 544

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05086 malate dehydrogenase; Provisional

Probab=96.70  E-value=0.0034  Score=55.06  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHH---HHHHHcC--cee----ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+ |.+|.+++..|.. .+.  ..++.++ +|++...   -.+.+.+  ..+    .++..+.++++|+||+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita   77 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA   77 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence            79999999 9999999987744 222  1378888 8875431   1232212  222    234356788999999997

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.70  E-value=0.0038  Score=55.27  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC--ceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++||+|||+ |..|..+++.|.+.+| +..++... .++.+.-+.+.-.+  +.+.+.......++|+||+|++.....+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~   78 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK   78 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH
Confidence            479999988 9999999999988777 43455655 44433323232122  2222212233478999999999888888


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      +...+
T Consensus        79 ~~~~~   83 (334)
T PRK14874         79 YAPKA   83 (334)
T ss_pred             HHHHH
Confidence            77766

>cd00704 MDH Malate dehydrogenase

Probab=96.68  E-value=0.003  Score=55.58  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCH--HHHHH----HHH------cCceeccCchhhhcCCCE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDA----FES------IGVKVLSDNNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~~----l~~------~g~~~~~~~~~~~~~aDv   74 (276)
                      .||+|||+ |++|+.++..|...+...   ..++.++ |+++  ++++-    +.+      .+..+..+..+.+++||+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi   79 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV   79 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence            48999999 999999999998877532   1258888 9987  54321    111      123344456678899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++-
T Consensus        80 VVitA   84 (323)
T cd00704          80 AILVG   84 (323)
T ss_pred             EEEeC
Confidence            99975

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.66  E-value=0.0036  Score=46.43  Aligned_cols=82  Identities=11%  Similarity=0.126  Sum_probs=49.7

Q ss_pred             cccHHHHHHHHHHHhC----CCCCCCeEEEEeCCC--HHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccHHHHH
Q 023866           17 GAGKMAESIAKGVAKS----GVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        17 G~G~mG~~la~~l~~~----g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~~~vl   88 (276)
                      |+|+||+.+++.|.+.    ++    +|..+++|+  ..........+.....+..+++.  ..|+||=|+.++.+.+.+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDL----EVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEE----EEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCE----EEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence            8999999999999876    34    555333887  11111111134455677888877  899999998888887777


Q ss_pred             HHHhhccccccCCcccCC
Q 023866           89 ITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~  106 (276)
                      ....+.|    ..++..+
T Consensus        77 ~~~L~~G----~~VVt~n   90 (117)
T PF03447_consen   77 EKALERG----KHVVTAN   90 (117)
T ss_dssp             HHHHHTT----CEEEES-
T ss_pred             HHHHHCC----CeEEEEC
Confidence            6663322    4555543

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.63  E-value=0.0035  Score=55.29  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHHH----HHH------cCceeccCchhhhcCCCE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDv   74 (276)
                      .||+|+|+ |.+|+.++..|...+...   ..+|.++ |+++.  +++.    +.+      ..+....+..+.+++||+
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi   81 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV   81 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence            68999999 999999999998866531   2479998 88553  2221    111      112233444577899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++-
T Consensus        82 VI~tA   86 (325)
T cd01336          82 AILVG   86 (325)
T ss_pred             EEEeC
Confidence            99975

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.61  E-value=0.0071  Score=54.44  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=51.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-----cee--ccCch-hhhcCCCEEEEee
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----VKV--LSDNN-AVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-----~~~--~~~~~-~~~~~aDvI~lav   79 (276)
                      +++||+|+|+ |..|..+.+.|.+..   ..+|... .++.+.-+.+....     ...  ..+.+ +.++++|+||+|+
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP---~~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al  112 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHP---DFEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL  112 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCC---CCeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence            5679999998 999999999887762   2388877 55444332222211     111  11111 2247899999999


Q ss_pred             CcccHHHHHHHH
Q 023866           80 KPQVDKAAVITE   91 (276)
Q Consensus        80 ~~~~~~~vl~~~   91 (276)
                      |.....++...+
T Consensus       113 p~~~s~~i~~~~  124 (381)
T PLN02968        113 PHGTTQEIIKAL  124 (381)
T ss_pred             CHHHHHHHHHHH
Confidence            998877887766

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.59  E-value=0.011  Score=53.37  Aligned_cols=78  Identities=21%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-------------------HHHHHHHHH------cCceec-
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-------------------LKRRDAFES------IGVKVL-   62 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-------------------~~~~~~l~~------~g~~~~-   62 (276)
                      ...||.|||+|.+|+.++..|...|.   .+++++ |++                   ..|++.+++      ..+.+. 
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~  209 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEA  209 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            35789999999999999999999997   478888 776                   234443332      223221 


Q ss_pred             -c------CchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 -S------DNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 -~------~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                       .      +..+.++++|+||-|+.....+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~  244 (376)
T PRK08762        210 VQERVTSDNVEALLQDVDVVVDGADNFPTRYLLND  244 (376)
T ss_pred             EeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence             1      123456789999999865544444433

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.58  E-value=0.0081  Score=55.44  Aligned_cols=63  Identities=22%  Similarity=0.387  Sum_probs=48.5

Q ss_pred             eEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceecc-CchhhhcCCCEEEEee
Q 023866           12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav   79 (276)
                      +|.|||.|..|.+ +|+.|.+.|+    +|+++ |++.. ..+.|++.|+.+.. ...+.+.++|+||.+-
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp   66 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA   66 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence            5889999999998 9999999999    99999 86543 34556667877642 2334567899999863

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.57  E-value=0.0098  Score=57.41  Aligned_cols=67  Identities=24%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS----   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~----   63 (276)
                      ..+||.|||.|..|.+.|..|.+.|+    +|+++ ++.+.                     ..+.+.+.|+.+..    
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v  383 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI  383 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence            46899999999999999999999999    99999 87752                     34455567765421    


Q ss_pred             ----CchhhhcCCCEEEEeeC
Q 023866           64 ----DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        64 ----~~~~~~~~aDvI~lav~   80 (276)
                          +..+.....|.||+++-
T Consensus       384 ~~~~~~~~l~~~~DaV~latG  404 (639)
T PRK12809        384 GRDITFSDLTSEYDAVFIGVG  404 (639)
T ss_pred             CCcCCHHHHHhcCCEEEEeCC
Confidence                12244567999999984

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.56  E-value=0.013  Score=52.38  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~--   62 (276)
                      ..||.|||+|.+|+.++..|...|.   .+++++ |.+.                   .|++    .+++  ..+.+.  
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            5799999999999999999999997   467777 6543                   1222    2323  223221  


Q ss_pred             ------cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                            .+..+.++++|+||.|+.....+.++..
T Consensus       104 ~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~  137 (355)
T PRK05597        104 VRRLTWSNALDELRDADVILDGSDNFDTRHLASW  137 (355)
T ss_pred             EeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence                  1124567899999999876555544443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.56  E-value=0.013  Score=51.96  Aligned_cols=70  Identities=21%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCeEE-EEeCCC----------HHHHHHHHH-cCc-e------ec
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHSN----------LKRRDAFES-IGV-K------VL   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r~----------~~~~~~l~~-~g~-~------~~   62 (276)
                      .+||+++|+|+||+.+++.|.+.        |.  .-+|. ++ |++          .+++..+.+ .+. .      ..
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~-d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~   78 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIA-DSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE   78 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence            36899999999999999988754        21  01544 44 753          344433333 231 1      12


Q ss_pred             cCchhhhc--CCCEEEEeeCcc
Q 023866           63 SDNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus        63 ~~~~~~~~--~aDvI~lav~~~   82 (276)
                      .+..+++.  +.|+|+.|+|+.
T Consensus        79 ~d~~ell~~~~~DvVvd~T~s~  100 (341)
T PRK06270         79 ISGLEVIRSVDADVVVEATPTN  100 (341)
T ss_pred             CCHHHHhhccCCCEEEECCcCc
Confidence            35566663  689999999864

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.55  E-value=0.0086  Score=53.39  Aligned_cols=79  Identities=13%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHH--------------cCceeccCchhhhcCC
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFES--------------IGVKVLSDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~--------------~g~~~~~~~~~~~~~a   72 (276)
                      .++||+|+| .|.+|..+++.|.+...   -++..+ .+++++.. .+..              ..+.+.....+...++
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV   77 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence            358999998 79999999998876432   366665 45543321 1111              0112222233445789


Q ss_pred             CEEEEeeCcccHHHHHHHH
Q 023866           73 DVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        73 DvI~lav~~~~~~~vl~~~   91 (276)
                      |+||+|+|.....++.+.+
T Consensus        78 DvVf~a~p~~~s~~~~~~~   96 (349)
T PRK08664         78 DIVFSALPSDVAGEVEEEF   96 (349)
T ss_pred             CEEEEeCChhHHHHHHHHH
Confidence            9999999998777776655

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.55  E-value=0.018  Score=46.98  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..||.|||+|.+|+.++++|...|.   .+++++ |.+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d   52 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR   52 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence            5789999999999999999999997   467777 543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08328 hypothetical protein; Provisional

Probab=96.54  E-value=0.017  Score=48.36  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..||.|||+|.+|+.++..|...|.   .+++++ |.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCc
Confidence            5789999999999999999999997   478888 7654

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=96.54  E-value=0.019  Score=42.98  Aligned_cols=88  Identities=20%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 023866          185 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK  254 (276)
Q Consensus       185 p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l-------~~  254 (276)
                      +.+++..+.++.|+   +.+.|+|+++..+++..+..++..+-.   ..|..+.+....|+++.....+++       ++
T Consensus        11 N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~   87 (122)
T PF14833_consen   11 NLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence            33445556666665   579999999999999988777755533   235557777778998888887765       45


Q ss_pred             CChHHHHHHHHHHHHHHHhhc
Q 023866          255 SGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       255 ~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .+++-.+.+++.+.|+++.+.
T Consensus        88 ~g~~~p~~~~~~~~~~~a~~~  108 (122)
T PF14833_consen   88 AGVPLPLGSAARQLYQAAKAQ  108 (122)
T ss_dssp             TT---HHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHHhc
Confidence            699999999999999988763

...

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.53  E-value=0.011  Score=54.11  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             CeEEEEcccHH-HHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEE
Q 023866           11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus        11 ~kIgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~   76 (276)
                      |||+|||+|.. ...+...|++.. -++..+|+++ |.++++++....        .|    +..++|..+++++||.||
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi   79 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI   79 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence            69999999983 335667776655 2566789999 999988765322        33    345688899999999999


Q ss_pred             EeeCcc
Q 023866           77 FSVKPQ   82 (276)
Q Consensus        77 lav~~~   82 (276)
                      ..+...
T Consensus        80 ~~irvG   85 (425)
T cd05197          80 NQFRVG   85 (425)
T ss_pred             EeeecC
Confidence            999654

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.50  E-value=0.024  Score=46.71  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceec---cCchhhhcCCC
Q 023866            1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVL---SDNNAVVEYSD   73 (276)
Q Consensus         1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~---~~~~~~~~~aD   73 (276)
                      |...|..  .+.++|.|||.|..|..=++.|++.|-    +|+++ ..+. +....+.+ .++...   -+..+ ...++
T Consensus         1 ~~~lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~   74 (210)
T COG1648           1 MNYLPLFLDLEGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAED-LDDAF   74 (210)
T ss_pred             CCccceEEEcCCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhh-hcCce
Confidence            4556655  467899999999999999999999998    99999 6554 44444444 333321   12333 44599


Q ss_pred             EEEEeeCcccHHHHHHHH
Q 023866           74 VVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~   91 (276)
                      +||.|+.+..+.+-+.+.
T Consensus        75 lviaAt~d~~ln~~i~~~   92 (210)
T COG1648          75 LVIAATDDEELNERIAKA   92 (210)
T ss_pred             EEEEeCCCHHHHHHHHHH
Confidence            999999987765554443

>PLN02775 Probable dihydrodipicolinate reductase

Probab=96.49  E-value=0.031  Score=47.98  Aligned_cols=110  Identities=17%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHHcCceec--cCchhhh-----c
Q 023866            2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----E   70 (276)
Q Consensus         2 ~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~   70 (276)
                      ++.|.+...+||.+.|+ |+||+..++.+.+.++    ++...+++.+.-.+   .+...++.+.  ++.++++     +
T Consensus         3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~   78 (286)
T PLN02775          3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE   78 (286)
T ss_pred             CcCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc
Confidence            34555555689999998 9999999999988777    77654466553211   1222255555  6666665     2


Q ss_pred             CCC-EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC
Q 023866           71 YSD-VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG  120 (276)
Q Consensus        71 ~aD-vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~  120 (276)
                      .+| |+|=-+.|+.+.+.+....+.|    .+.+....|. +.++++++..
T Consensus        79 ~~~~VvIDFT~P~a~~~~~~~~~~~g----~~~VvGTTG~-~~e~l~~~~~  124 (286)
T PLN02775         79 YPNLIVVDYTLPDAVNDNAELYCKNG----LPFVMGTTGG-DRDRLLKDVE  124 (286)
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCC----CCEEEECCCC-CHHHHHHHHh
Confidence            488 6666778888777776553333    5666666888 8877776543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.49  E-value=0.0049  Score=52.99  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..+.+++.|||.|. +|..++..|.+.|.    .|+++ +++.              .+..+.+++||+||.++..
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~  211 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGK  211 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCC
Confidence            34678999999988 99999999998887    99998 6642              2345678999999999964

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.48  E-value=0.0048  Score=53.98  Aligned_cols=65  Identities=12%  Similarity=0.161  Sum_probs=45.4

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH--cCceec---cC--chhhhcCCCEEEEee
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL---SD--NNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~---~~--~~~~~~~aDvI~lav   79 (276)
                      ||+|||+ |++|++++..|...++.  .++.++ |+++...  ..+.+  ....+.   .+  ..+.+++||+||++.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvita   75 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPA   75 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeC
Confidence            7999999 99999999998877753  478898 9876221  12222  112222   12  257789999999987

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.44  E-value=0.012  Score=56.88  Aligned_cols=68  Identities=24%  Similarity=0.358  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc---
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---   63 (276)
                      ...++|.|||+|..|.+.|..|.+.|+    +|+++ ++.+.                     ..+.+++.|+.+..   
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~  399 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCE  399 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCE
Confidence            356799999999999999999999999    99999 87642                     23445556765421   


Q ss_pred             -----CchhhhcCCCEEEEeeC
Q 023866           64 -----DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        64 -----~~~~~~~~aDvI~lav~   80 (276)
                           +..+.....|.||+++-
T Consensus       400 v~~~i~~~~~~~~~DavilAtG  421 (654)
T PRK12769        400 VGKDISLESLLEDYDAVFVGVG  421 (654)
T ss_pred             eCCcCCHHHHHhcCCEEEEeCC
Confidence                 12233457999999983

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.43  E-value=0.0068  Score=48.14  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG   58 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g   58 (276)
                      |......||.|+|.|+.|..-+..+...|.    +++++ +.++++.+++...+
T Consensus        15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~   63 (168)
T PF01262_consen   15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLG   63 (168)
T ss_dssp             TTEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTT
T ss_pred             CCCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhccc
Confidence            333456899999999999999999999998    99999 99999888877644

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.41  E-value=0.019  Score=51.54  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHH----HHH--cCcee--c
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~   62 (276)
                      ..+|.|||+|.+|+.++..|...|.   .+++++ |.+.                   .|++.    +.+  ..+.+  .
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            5789999999999999999999996   467777 6541                   12222    222  12221  1


Q ss_pred             ------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                            .+..+.++++|+||-|+.....+-.+.++
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~  151 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADA  151 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence                  12235678999999999776666555544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.40  E-value=0.0089  Score=50.36  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=29.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..||.|+|+|.+|+.++..|...|.   .+++++ |.+
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D   57 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFD   57 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence            5789999999999999999999996   467776 554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.37  E-value=0.0076  Score=53.08  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-eEEEEeCCCHHH--HHH----HHH------cCceeccCchhhhcCCCEE
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~--~~-~V~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDvI   75 (276)
                      ||+|||+ |++|+.++..|...+.+.  .+ ++.++ |+++..  ++-    +.+      ..+....+..+.+++||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence            6999999 999999999999877642  22 68899 985442  211    111      1122222445778999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      |++-
T Consensus        80 VitA   83 (324)
T TIGR01758        80 ILVG   83 (324)
T ss_pred             EEcC
Confidence            9976

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.35  E-value=0.0084  Score=50.11  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      ...||.|||+|.+|+.++..|.+.|.   .+++++ |.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~   53 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD   53 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence            35799999999999999999999997   366666 44

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.34  E-value=0.016  Score=57.57  Aligned_cols=66  Identities=23%  Similarity=0.348  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcccHHHHHH-HHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceec-cCchhhhcCCCEEEEe
Q 023866            8 AESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVL-SDNNAVVEYSDVVVFS   78 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~-~~~~~~~~~aDvI~la   78 (276)
                      |.+++|.|||+|..|.+. |+.|.+.|+    +|+++ |.++ ...+.|.+.|+.+. ....+.+.++|+||.+
T Consensus         2 ~~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S   70 (809)
T PRK14573          2 MKSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS   70 (809)
T ss_pred             CCcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence            456679999999999997 999999999    99999 8654 33455767788753 2334556789999986

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.32  E-value=0.017  Score=52.92  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=52.0

Q ss_pred             CeEEEEcccHH-HHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEE
Q 023866           11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus        11 ~kIgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~   76 (276)
                      |||+|||+|.. +..+...|++.. .++..+|+++ |.++++++....        .|    +..++|..+++++||.||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi   79 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF   79 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence            79999999985 223556666552 2455789999 999988765332        23    345678899999999999


Q ss_pred             EeeCcc
Q 023866           77 FSVKPQ   82 (276)
Q Consensus        77 lav~~~   82 (276)
                      .++...
T Consensus        80 ~~irvG   85 (437)
T cd05298          80 AQIRVG   85 (437)
T ss_pred             EEeeeC
Confidence            998654

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.32  E-value=0.013  Score=55.07  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=39.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+++.|+|+|.+|.+++..|.+.|.    +|+++ +|+.++.+.+.+
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~  420 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD  420 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence            345789999999999999999999998    99999 999999888765

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.27  E-value=0.012  Score=51.51  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=49.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc---eec-cCchhh-hcCCCEEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDvI~l   77 (276)
                      .++||+|||+ |--|.-|.+.|...-.   -++..+ ..+..+-+.+.+     .|.   ... -++.++ .++||+||+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~---ve~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl   76 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPD---VELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL   76 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC---eEEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence            3689999988 9999999888765533   255555 333322223332     121   111 122332 446999999


Q ss_pred             eeCcccHHHHHHHHh
Q 023866           78 SVKPQVDKAAVITEE   92 (276)
Q Consensus        78 av~~~~~~~vl~~~~   92 (276)
                      |+|+..-.++..++.
T Consensus        77 alPhg~s~~~v~~l~   91 (349)
T COG0002          77 ALPHGVSAELVPELL   91 (349)
T ss_pred             ecCchhHHHHHHHHH
Confidence            999998888887773

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.27  E-value=0.012  Score=49.84  Aligned_cols=79  Identities=11%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec-
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL-   62 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~-   62 (276)
                      ...||.|||+|.+|+.++..|...|.   .+++++ |.+.                   .|++    .+.+  ..+.+. 
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            35799999999999999999999996   367776 5432                   1222    2222  122221 


Q ss_pred             ------c-CchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           63 ------S-DNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ------~-~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                            . +..+.++++|+||.|+.....+..+.+.
T Consensus       107 ~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~  142 (245)
T PRK05690        107 INARLDDDELAALIAGHDLVLDCTDNVATRNQLNRA  142 (245)
T ss_pred             EeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHH
Confidence                  1 1234567899999998665555544443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.23  E-value=0.022  Score=51.92  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=50.1

Q ss_pred             CeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEEEEeCCC-HHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866           11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFES--------IG----VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI   75 (276)
                      |||+|||+|..-+ .+...|++. --++..+|+++ |.+ +++++....        .|    +..++|..+++++||+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV   79 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV   79 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            6999999998644 455666653 22455789999 999 888654321        23    34567889999999999


Q ss_pred             EEeeCc
Q 023866           76 VFSVKP   81 (276)
Q Consensus        76 ~lav~~   81 (276)
                      |.+...
T Consensus        80 i~~~~v   85 (419)
T cd05296          80 FTQIRV   85 (419)
T ss_pred             EEEEee
Confidence            999843

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.21  E-value=0.029  Score=52.04  Aligned_cols=66  Identities=24%  Similarity=0.389  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS----   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~----   63 (276)
                      ..++|.|||.|..|.+.|..|.+.|+    +|+++ ++.+.                     ..+.+.+.|+.+..    
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v  214 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV  214 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence            45789999999999999999999999    99999 87641                     24456667765421    


Q ss_pred             ----CchhhhcCCCEEEEee
Q 023866           64 ----DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 ----~~~~~~~~aDvI~lav   79 (276)
                          ...+....+|.||+|+
T Consensus       215 ~~~~~~~~~~~~~D~vilAt  234 (467)
T TIGR01318       215 GRDISLDDLLEDYDAVFLGV  234 (467)
T ss_pred             CCccCHHHHHhcCCEEEEEe
Confidence                1123335799999998

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.17  E-value=0.016  Score=51.28  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeC-CCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      .+||||||+ |..|.-|.+.|.+...++..++.+..+ ++.-+.-.+....+.+.....+...++|++|+|+|.....++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~   84 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF   84 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence            379999998 999999999887544444445655412 222111112112233322222335789999999998887777


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ...+
T Consensus        85 ~~~~   88 (347)
T PRK06728         85 VNQA   88 (347)
T ss_pred             HHHH
Confidence            7765

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.16  E-value=0.015  Score=51.68  Aligned_cols=82  Identities=12%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEe-CCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ..+||+|||+ |..|.-+.+.|.+.+| +..++.... .|+..+.-........+.....+.+.++|+||+|+|.....+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence            3579999988 9999999998888777 444554331 333222211111112222222244578999999999988778


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      +..++
T Consensus        85 ~~~~~   89 (344)
T PLN02383         85 FGPIA   89 (344)
T ss_pred             HHHHH
Confidence            87766

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.14  E-value=0.024  Score=47.87  Aligned_cols=67  Identities=12%  Similarity=0.255  Sum_probs=47.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCceec----cC-c---hhhh-cCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL----SD-N---NAVV-EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~----~~-~---~~~~-~~aDvI~   76 (276)
                      ++++|.|+|+ |.+|+.++..|++.|+    +|++. .|++++...+..  .++.+.    .+ .   .+.+ ..+|+||
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi   90 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI   90 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence            3689999995 9999999999999998    99988 898877654432  133211    11 1   1234 4789999


Q ss_pred             EeeC
Q 023866           77 FSVK   80 (276)
Q Consensus        77 lav~   80 (276)
                      .+..
T Consensus        91 ~~~g   94 (251)
T PLN00141         91 CATG   94 (251)
T ss_pred             ECCC
Confidence            7754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.11  E-value=0.042  Score=49.01  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCch---------hhh--cCCCEEEEee
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNN---------AVV--EYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~aDvI~lav   79 (276)
                      ++.|+|+|.||...+..+...|.   .+|++. |++++|++.+++ .|.....+..         +..  ..+|++|-|+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence            89999999999977666655654   488888 999999999888 5655332221         111  2489999998


Q ss_pred             Ccc-cHHHHHH
Q 023866           80 KPQ-VDKAAVI   89 (276)
Q Consensus        80 ~~~-~~~~vl~   89 (276)
                      -.. .+.+.+.
T Consensus       247 G~~~~~~~ai~  257 (350)
T COG1063         247 GSPPALDQALE  257 (350)
T ss_pred             CCHHHHHHHHH
Confidence            622 3444443

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.09  E-value=0.019  Score=52.89  Aligned_cols=65  Identities=15%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cCceecc--CchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDvI~lav   79 (276)
                      .-.|.|||.|..|.++|+.|.+.|+    +|+++ |..+.  ..+.|++  .|+.+..  ...+.+.++|+||.+-
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp   76 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP   76 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence            4579999999999999999999999    99999 86543  2344655  3776532  2345567899998863

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.09  E-value=0.018  Score=51.23  Aligned_cols=78  Identities=14%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c------C-------ceeccCchhhhcCCCEE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDvI   75 (276)
                      +||+|+|+ |.||.-+++.|.+...+   +|...++++++.-+.+.+ .      +       ..+.....+...++|+|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV   77 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV   77 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence            58999996 99999999988765421   555332444332222211 0      1       11111122345789999


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      |+|+|+....++...+
T Consensus        78 f~a~p~~~s~~~~~~~   93 (341)
T TIGR00978        78 FSALPSEVAEEVEPKL   93 (341)
T ss_pred             EEeCCHHHHHHHHHHH
Confidence            9999998777666655

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.09  E-value=0.022  Score=55.13  Aligned_cols=68  Identities=18%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceeccC-
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD-   64 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~-   64 (276)
                      +...++|.|||+|..|.+.|..|.+.|+    +|+++ ++++.                     ..+.+.+.|+.+..+ 
T Consensus       190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~  264 (652)
T PRK12814        190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNT  264 (652)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            3456899999999999999999999999    99999 77642                     134445567654211 


Q ss_pred             -------chhhhcCCCEEEEee
Q 023866           65 -------NNAVVEYSDVVVFSV   79 (276)
Q Consensus        65 -------~~~~~~~aDvI~lav   79 (276)
                             ..+....+|.||+++
T Consensus       265 ~v~~dv~~~~~~~~~DaVilAt  286 (652)
T PRK12814        265 VFGRDITLEELQKEFDAVLLAV  286 (652)
T ss_pred             cccCccCHHHHHhhcCEEEEEc
Confidence                   223334589999998

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.09  E-value=0.021  Score=53.74  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=35.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +.++|.|.|+ |.+|..+++.|++.|+    +|+++ .|+.++.+.+.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~  121 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV  121 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence            4566888876 9999999999999999    99999 99988876543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.05  E-value=0.024  Score=53.97  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---------------------HHHHHHHHHcCceeccC-
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---------------------LKRRDAFESIGVKVLSD-   64 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---------------------~~~~~~l~~~g~~~~~~-   64 (276)
                      +...++|.|||+|..|.+.+..|.+.|+    +|+++ ++.                     ..+.+.+.+.|+.+..+ 
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~  208 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV  208 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence            3456799999999999999999999998    89998 853                     23345566677653211 


Q ss_pred             -------chhhhcCCCEEEEeeC
Q 023866           65 -------NNAVVEYSDVVVFSVK   80 (276)
Q Consensus        65 -------~~~~~~~aDvI~lav~   80 (276)
                             ..+.-...|+||+++-
T Consensus       209 ~~~~~~~~~~~~~~~D~Vi~AtG  231 (564)
T PRK12771        209 RVGEDITLEQLEGEFDAVFVAIG  231 (564)
T ss_pred             EECCcCCHHHHHhhCCEEEEeeC
Confidence                   1122345899999993

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.04  E-value=0.028  Score=51.84  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cCceecc--CchhhhcCCCEEEEee--C
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV--K   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDvI~lav--~   80 (276)
                      +.++|.|+|.|..|.+.++.|.+.|+    +|+++ |.++.  ..+++.+  .|+.+..  ...+...++|+||.+.  |
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS   78 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence            45789999999999999999999999    99999 86543  2345554  3766432  1233346899999975  5


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      |.
T Consensus        79 ~~   80 (445)
T PRK04308         79 ER   80 (445)
T ss_pred             CC
Confidence            43

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.01  E-value=0.014  Score=51.63  Aligned_cols=82  Identities=16%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHcCceeccCchhh-hcCCCEEEEeeCcccH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVD   84 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~-~~~aDvI~lav~~~~~   84 (276)
                      ++.+||+|||+ |..|.-|.+.|.+..| +..++.....+ +.-+.-.+....+.+. +.++. ..++|++|+|+|....
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s   79 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS   79 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence            46789999998 9999999998877555 55576655122 2111111111123332 33332 2689999999998887


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .++.+++
T Consensus        80 ~~~~~~~   86 (336)
T PRK08040         80 AAYAEEA   86 (336)
T ss_pred             HHHHHHH
Confidence            7777766

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.94  E-value=0.058  Score=46.70  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHHHHHHcCceeccCchhhhcC--CCEEEEeeCccc
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDvI~lav~~~~   83 (276)
                      ++.||.|.|. |.+|..+..+|.+.|+   ..++.+ +++  .+..     .|+..+.+..++-+.  .|+.+++||++.
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~---~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~~   77 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAYGT---NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPPF   77 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHCCC---CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHHH
Confidence            5679999999 8899999999999888   134344 654  2221     588888888888776  899999999999


Q ss_pred             HHHHHHHHhhcc
Q 023866           84 DKAAVITEEAFG   95 (276)
Q Consensus        84 ~~~vl~~~~~~~   95 (276)
                      +.+++++..+.|
T Consensus        78 v~~~l~e~~~~g   89 (291)
T PRK05678         78 AADAILEAIDAG   89 (291)
T ss_pred             HHHHHHHHHHCC
Confidence            999999885434

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.92  E-value=0.028  Score=48.49  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+.+++.|||.|. .|.+++..|.+.|.    .|+++ +|..+              +..+.++++|+||-|+.
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccC
Confidence            3567999999998 99999999999887    99999 77322              23344588999999993

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.88  E-value=0.019  Score=52.75  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=46.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HH----HHH-HcCceecc-CchhhhcCCCEEEEee
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RD----AFE-SIGVKVLS-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~----~l~-~~g~~~~~-~~~~~~~~aDvI~lav   79 (276)
                      ||.|||+|..|.++|+.|.+.|+    +|+++ |.++.. .+    .+. ..|+.+.. ...+.+.++|+||.+-
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp   70 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP   70 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence            58999999999999999999999    99999 865431 11    223 24776532 2245567899999864

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.88  E-value=0.018  Score=52.65  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH----HHHHHHcCceecc--CchhhhcCCCEEEEe--eCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS--VKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDvI~la--v~~   81 (276)
                      .+||.|+|+|.-|.+.++.|.+.|+    +|+++ |.++..    ...+...++.+..  .+.+...++|+|+++  +|+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~   81 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP   81 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence            6899999999999999999999998    99999 866544    1222235654322  222456789999996  455


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus        82 ~   82 (448)
T COG0771          82 T   82 (448)
T ss_pred             C
Confidence            4

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.88  E-value=0.019  Score=51.22  Aligned_cols=81  Identities=7%  Similarity=0.039  Sum_probs=51.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceecc-CchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      |++|||||+ |..|.-|.+.+++...++..++..+ ..+..  +.-.+......+.. ...+...++|++|+|++.....
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~   79 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN   79 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence            479999998 9999999986666555455557666 43211  11111111122222 1123457899999999988878


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      ++...+
T Consensus        80 ~~~~~~   85 (369)
T PRK06598         80 EVYPKL   85 (369)
T ss_pred             HHHHHH
Confidence            887766

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.87  E-value=0.017  Score=49.98  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=24.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      ||.|||+|.+|+.+++.|...|.   .+|+++
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGV---g~Itlv   29 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGV---RHITFV   29 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC---CeEEEE
Confidence            68999999999999999999996   355554

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.86  E-value=0.014  Score=51.50  Aligned_cols=74  Identities=12%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHHcCceec-c---CchhhhcCCCEEEE---eeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIGVKVL-S---DNNAVVEYSDVVVF---SVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~~g~~~~-~---~~~~~~~~aDvI~l---av~~   81 (276)
                      +++|||||.|.+|..|+..-.+-|+    ++.+. |.+++.-. +....-+... +   ...++++.||+|=.   =||.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~   75 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA   75 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence            4789999999999999999999999    99999 87765422 2222112211 2   23466778888844   2344


Q ss_pred             ccHHHHH
Q 023866           82 QVDKAAV   88 (276)
Q Consensus        82 ~~~~~vl   88 (276)
                      +.+..+.
T Consensus        76 ~aL~~l~   82 (375)
T COG0026          76 EALEKLA   82 (375)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK07411 hypothetical protein; Validated

Probab=95.86  E-value=0.039  Score=49.95  Aligned_cols=78  Identities=18%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-------------------HH----HHHHH--cCcee---
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-------------------RR----DAFES--IGVKV---   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-------------------~~----~~l~~--~g~~~---   61 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+++++ |.+.-                   |+    +.+++  ..+++   
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            5789999999999999999999997   366666 54321                   11    22222  22221   


Q ss_pred             ----cc-CchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           62 ----LS-DNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        62 ----~~-~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                          .. +..+.+.++|+||.|+.....+..+.+.
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~  148 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDA  148 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence                11 1235678999999999766666555544

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.83  E-value=0.014  Score=51.71  Aligned_cols=78  Identities=19%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      ||+|||+ |..|..|++.|.+.+| +..++.+. .++.+.-+.+.-.|.  .+.+-..+...++|++|+|++.....++.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence            6899995 9999999999988877 44455554 444333222222232  22211223457899999999988877777


Q ss_pred             HHH
Q 023866           89 ITE   91 (276)
Q Consensus        89 ~~~   91 (276)
                      ..+
T Consensus        79 ~~~   81 (339)
T TIGR01296        79 PKA   81 (339)
T ss_pred             HHH
Confidence            765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06182 short chain dehydrogenase; Validated

Probab=95.81  E-value=0.037  Score=47.21  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=38.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      +.++|.|.|+ |.+|.++++.|.+.|+    +|++. +|++++++.+...++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~~~~   48 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLASLGV   48 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhCCC
Confidence            4578888886 9999999999999999    99999 999988877655443

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.79  E-value=0.077  Score=44.03  Aligned_cols=83  Identities=14%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             CCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHc-Cceecc-C-chhhhcCCCEEEE
Q 023866            4 FPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLS-D-NNAVVEYSDVVVF   77 (276)
Q Consensus         4 ~~~~~--~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~-~-~~~~~~~aDvI~l   77 (276)
                      +|...  +.++|-|||.|.+|..=+..|++.|-    +|+|+ ...- +.++.+.+. .+.... + ..+.++.+++||.
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVia   91 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVI   91 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEE
Confidence            45443  36799999999999998999999997    99998 6543 233444443 343221 1 1233678999999


Q ss_pred             eeCcccHHHHHHHH
Q 023866           78 SVKPQVDKAAVITE   91 (276)
Q Consensus        78 av~~~~~~~vl~~~   91 (276)
                      |+.+..+..-+...
T Consensus        92 ATdD~~vN~~I~~~  105 (223)
T PRK05562         92 ATDDEKLNNKIRKH  105 (223)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99887766555444

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.77  E-value=0.037  Score=51.16  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=46.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HH----HHHHHcCceecc-C-ch-----hhhcCCCEEEEee
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLS-D-NN-----AVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~----~~l~~~g~~~~~-~-~~-----~~~~~aDvI~lav   79 (276)
                      ||.|||+|..|.+.|+.|.+.|+    +|.++ |+++. ..    +.+.+.|+.+.. . ..     ....++|+||.+-
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence            79999999999999999999999    99999 87643 22    345567876532 1 11     2456799999854

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.66  E-value=0.055  Score=50.32  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc--
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS--   63 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~--   63 (276)
                      +...++|.|||.|.-|.+.|..|.+.|+    +|+++ ++.+.                     ..+.+.+.|+.+..  
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~  214 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNV  214 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCC
Confidence            3456799999999999999999999999    89998 76531                     12344556765321  


Q ss_pred             ------CchhhhcCCCEEEEee
Q 023866           64 ------DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 ------~~~~~~~~aDvI~lav   79 (276)
                            +..+....+|.||+++
T Consensus       215 ~v~~~~~~~~~~~~~d~vvlAt  236 (471)
T PRK12810        215 EVGKDITAEELLAEYDAVFLGT  236 (471)
T ss_pred             EECCcCCHHHHHhhCCEEEEec
Confidence                  1223335789999998

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.65  E-value=0.031  Score=48.67  Aligned_cols=64  Identities=17%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+++|+||+|++|+-++..+..-|.    .+..+.+..+.  +.++..|++.. +.+|+...||.|=+=+|
T Consensus       146 GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~dpi~~~--~~~~a~gvq~v-sl~Eil~~ADFitlH~P  209 (406)
T KOG0068|consen  146 GKTLGVLGLGRIGSEVAVRAKAMGM----HVIGYDPITPM--ALAEAFGVQLV-SLEEILPKADFITLHVP  209 (406)
T ss_pred             ccEEEEeecccchHHHHHHHHhcCc----eEEeecCCCch--HHHHhccceee-eHHHHHhhcCEEEEccC
Confidence            4789999999999999999887776    77777233332  45556899875 57889999999988776

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.58  E-value=0.11  Score=43.58  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      ||.+||+|.+|+.+++.|...|+   .+++++ |.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~   31 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DM   31 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eC
Confidence            68999999999999999999997   467776 54

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.57  E-value=0.12  Score=44.31  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...+|.|||+|.+|+..+..|.++|.   .+++++ |.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence            45789999999999999999999995   367776 543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.55  E-value=0.082  Score=46.30  Aligned_cols=82  Identities=15%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEe-CCCHHHH-HHHHHcCceecc--CchhhhcCCCEEEEeeCcccH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDvI~lav~~~~~   84 (276)
                      +++|||+|+ |.+|+.|.+.|.+..+ +-..+.++. .|+.-+. -.+....+.+-.  ......+++|++|.|.+...-
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s   79 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS   79 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence            479999987 9999999999887643 333444441 3433222 222222222222  122335689999999988777


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      +++.+.+.
T Consensus        80 ~~~~p~~~   87 (334)
T COG0136          80 KEVEPKAA   87 (334)
T ss_pred             HHHHHHHH
Confidence            88877774

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.53  E-value=0.021  Score=49.87  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      ++||+|||+ |..|.-+.+.|.+..++   ++... ..+..+       ..   .+..+...++|++|+|+|.....++.
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~-~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s~~~~   67 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSI-PEAKRK-------DA---AARRELLNAADVAILCLPDDAAREAV   67 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEE-ecCCCC-------cc---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence            579999996 99999999977665421   33333 222111       11   22334557899999999998877877


Q ss_pred             HHH
Q 023866           89 ITE   91 (276)
Q Consensus        89 ~~~   91 (276)
                      .++
T Consensus        68 ~~~   70 (313)
T PRK11863         68 ALI   70 (313)
T ss_pred             HHH
Confidence            776

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=95.53  E-value=0.044  Score=49.72  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcccHHHHHH-HHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-------H-cC----ceeccCchhhhcCCC
Q 023866            8 AESFILGFIGAGKMAESI-AKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSD   73 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~l-a~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aD   73 (276)
                      |+++||+|||.|.-..+- ..+++ +.--++..+|.++ |.++++.+...       + .|    +..++|..+++++||
T Consensus         1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd   79 (442)
T COG1486           1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD   79 (442)
T ss_pred             CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence            467899999999887653 22333 2222455688999 99998876322       2 34    345678899999999


Q ss_pred             EEEEeeCcccHH
Q 023866           74 VVVFSVKPQVDK   85 (276)
Q Consensus        74 vI~lav~~~~~~   85 (276)
                      .|+.++.+..++
T Consensus        80 fVi~~~rvG~l~   91 (442)
T COG1486          80 FVITQIRVGGLE   91 (442)
T ss_pred             EEEEEEeeCCcc
Confidence            999999766543

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.52  E-value=0.1  Score=48.28  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhhcCCCE
Q 023866            1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV   74 (276)
Q Consensus         1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDv   74 (276)
                      |+.+|..  .+.++|.|||.|.++..=++.|++.|-    +|+++ .+.- +..+.+.+.| +.....  ..+.++++++
T Consensus         1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l   75 (457)
T PRK10637          1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL   75 (457)
T ss_pred             CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence            7888887  467999999999999998999999998    99998 6542 2344444433 332211  1244688999


Q ss_pred             EEEeeCcccHHHHH
Q 023866           75 VVFSVKPQVDKAAV   88 (276)
Q Consensus        75 I~lav~~~~~~~vl   88 (276)
                      ||.|+.+..+..-+
T Consensus        76 v~~at~d~~~n~~i   89 (457)
T PRK10637         76 AIAATDDDAVNQRV   89 (457)
T ss_pred             EEECCCCHHHhHHH
Confidence            99999887655433

>PLN02427 UDP-apiose/xylose synthase

Probab=95.51  E-value=0.03  Score=50.53  Aligned_cols=67  Identities=7%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHc-------Cceec-c------CchhhhcC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL-S------DNNAVVEY   71 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~-~------~~~~~~~~   71 (276)
                      .+.|||.|.|+ |-+|+.+++.|++. |+    +|++. +|+.++.+.+...       ++... .      +..+++++
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   86 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM   86 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence            34579999985 99999999999988 57    99998 8887766554332       22211 1      12345667


Q ss_pred             CCEEEEee
Q 023866           72 SDVVVFSV   79 (276)
Q Consensus        72 aDvI~lav   79 (276)
                      +|+||=+.
T Consensus        87 ~d~ViHlA   94 (386)
T PLN02427         87 ADLTINLA   94 (386)
T ss_pred             CCEEEEcc
Confidence            99988754

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=95.50  E-value=0.057  Score=47.34  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCeEEEEeCCCHHHHHHHHHcC-ceeccCc-----hhhh--cCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRICTAVHSNLKRRDAFESIG-VKVLSDN-----NAVV--EYSD   73 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~-~-----~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~aD   73 (276)
                      |+.++|+++|+|.+|+.+++-|.+++. +     ..-+|....+|+....+.+.-.+ ....++.     .+++  .+.|
T Consensus         1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (333)
T COG0460           1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID   80 (333)
T ss_pred             CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence            456899999999999999998877532 0     01123322266655443111122 1122222     3333  3568


Q ss_pred             EEEEeeCc
Q 023866           74 VVVFSVKP   81 (276)
Q Consensus        74 vI~lav~~   81 (276)
                      +|+-+++.
T Consensus        81 vvve~~~~   88 (333)
T COG0460          81 VVVELVGG   88 (333)
T ss_pred             EEEecCcc
Confidence            99988865

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.46  E-value=0.088  Score=45.47  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHH----HHHHHc--Ccee--
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVKV--   61 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~~--g~~~--   61 (276)
                      ...+|.|+|+|.+|..++++|..+|.   ..|+++ |.+.                   .|+    +++++.  .+.+  
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~   93 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV   93 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence            45789999999999999999999997   478887 6432                   111    223332  2322  


Q ss_pred             cc--CchhhhcCCCEEEEeeCccc
Q 023866           62 LS--DNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        62 ~~--~~~~~~~~aDvI~lav~~~~   83 (276)
                      .+  ...+.+.+.|+||.+..+..
T Consensus        94 ~~~~~~~~~l~~fdvVV~~~~~~~  117 (286)
T cd01491          94 STGPLTTDELLKFQVVVLTDASLE  117 (286)
T ss_pred             EeccCCHHHHhcCCEEEEecCCHH
Confidence            21  13466789999999875443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.46  E-value=0.036  Score=49.17  Aligned_cols=63  Identities=13%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCceec-cCc-------hhhhcCCCEEEE
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDvI~l   77 (276)
                      ||||.|.|+ |-+|+.++..|++. |+    +|++. +|+.++...+.. .++... .|.       .++++++|+||=
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH   74 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP   74 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence            478999997 99999999999876 68    99999 888766554433 233321 121       234678999994

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.45  E-value=0.019  Score=50.15  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=46.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav   79 (276)
                      |+|.|.|+ |.+|..++..|++.|+    +|++. +|++++...+...++...       .+..++++.+|+||-+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            57999985 9999999999999998    99999 888776544433343321       12334567889998875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.44  E-value=0.067  Score=49.18  Aligned_cols=64  Identities=19%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceecc--CchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS--DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~--~~~~~~~~aDvI~lav   79 (276)
                      .++|.|||.|..|.+.++.|.+.|+    +|+++ |..+.  ..+.+.+ |+.+..  ...+.+++.|+||.+-
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~----~v~~~-D~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~d~vv~sp   73 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGV----TPRVI-DTRITPPGLDKLPE-NVERHTGSLNDEWLLAADLIVASP   73 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCCCchhHHHHhc-CCEEEeCCCCHHHhcCCCEEEECC
Confidence            4689999999999999999999998    99999 86432  2334533 765532  2334467789877753

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.42  E-value=0.067  Score=48.48  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~--   62 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+++++ |.+.                   .|++    .+++  ..+.+.  
T Consensus        42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            5789999999999999999999997   366666 5432                   1222    2222  123321  


Q ss_pred             ------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                            .+..+.++++|+||.|+.....+-.+.+.
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~  152 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDA  152 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence                  11235678899999998665555555443

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=95.41  E-value=0.11  Score=44.80  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=60.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcC--CCEEEEeeCcccH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDvI~lav~~~~~   84 (276)
                      +..||.|.|. |.+|+.+..++...|+    + .++ .-+|.+ .+.  -.|+..+.+..++.+.  .|+.++++|+..+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v   76 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPFA   76 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence            4578999997 9999999999999998    5 333 233331 111  1588888888887765  7999999999999


Q ss_pred             HHHHHHHhhcc
Q 023866           85 KAAVITEEAFG   95 (276)
Q Consensus        85 ~~vl~~~~~~~   95 (276)
                      .+++.+..+.|
T Consensus        77 ~~~l~e~~~~G   87 (286)
T TIGR01019        77 ADAIFEAIDAG   87 (286)
T ss_pred             HHHHHHHHHCC
Confidence            99999885434

ATP citrate lyases appear to form an outgroup.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.39  E-value=0.054  Score=46.11  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .++.++++-|-|+ +.+|..+|+.|.+.|+    +|.++ .|+.++++++.+
T Consensus         2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~   48 (265)
T COG0300           2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAK   48 (265)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHH
Confidence            4566778888888 9999999999999999    99999 999999988875

>PLN02477 glutamate dehydrogenase

Probab=95.38  E-value=0.083  Score=47.97  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCC----------HHHHHHHHH-c-------CceeccCchhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFES-I-------GVKVLSDNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~----------~~~~~~l~~-~-------g~~~~~~~~~~   68 (276)
                      .+.++|+|.|.|++|+..++.|.+.|.    +|+ ++ |.+          .+.+.+.++ .       +.... ++.++
T Consensus       204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~  277 (410)
T PLN02477        204 IAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDI  277 (410)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccc
Confidence            356899999999999999999999998    877 66 776          555533333 1       12211 22232


Q ss_pred             -hcCCCEEEEeeCccc-HHHHHHHH
Q 023866           69 -VEYSDVVVFSVKPQV-DKAAVITE   91 (276)
Q Consensus        69 -~~~aDvI~lav~~~~-~~~vl~~~   91 (276)
                       ..+|||++.|--... -.+....+
T Consensus       278 l~~~~DvliP~Al~~~I~~~na~~i  302 (410)
T PLN02477        278 LVEPCDVLIPAALGGVINKENAADV  302 (410)
T ss_pred             eeccccEEeeccccccCCHhHHHHc
Confidence             348999999854333 34444555

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.38  E-value=0.043  Score=47.21  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...+++.|||.|.. |.+++..|.+.|.    .|+++ ++.              +.+..+.+++||+||.+++.
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~--------------t~~l~~~~~~ADIVV~avG~  211 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSK--------------TRDLAAHTRQADIVVAAVGK  211 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCC--------------CCCHHHHhhhCCEEEEcCCC
Confidence            35689999999988 9999999998887    89988 643              12455678999999999973

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.32  E-value=0.033  Score=49.37  Aligned_cols=92  Identities=14%  Similarity=0.183  Sum_probs=53.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCeEE-EEeCCCH----------HHHHHHHH-cC-ce-ec-----
Q 023866           10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRIC-TAVHSNL----------KRRDAFES-IG-VK-VL-----   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~--------~g~~~~~~V~-v~~~r~~----------~~~~~l~~-~g-~~-~~-----   62 (276)
                      .++|+++|+|++|+.+++.|.+        .|.  .-+|. +. |++.          +++...++ .+ +. ..     
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~-ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~   78 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSIT-DTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV   78 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence            3799999999999999998776        343  01333 34 5432          12212222 12 11 11     


Q ss_pred             --cCchhhh--cCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCC
Q 023866           63 --SDNNAVV--EYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSG  108 (276)
Q Consensus        63 --~~~~~~~--~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g  108 (276)
                        .+..+++  .++|+||-++.++...++.......|    .+++..+.|
T Consensus        79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G----~~VVtanK~  124 (336)
T PRK08374         79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEG----KSVVTSNKP  124 (336)
T ss_pred             cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhC----CcEEECCHH
Confidence              1444555  47999999998877777766653222    566655433

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.041  Score=50.05  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh--cCCCEEEEe--eCcc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ   82 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDvI~la--v~~~   82 (276)
                      |+|.|+|+|.-|.+.++.|. .|+    +|+++ |.++... .+.+.|+...  ..+..  +++|+||.+  +|+.
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~--~~~~~~~~~~d~vv~sp~i~~~   67 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL--PSNDFDPNKSDLEIPSPGIPPS   67 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe--cHHHcCcCCCCEEEECCCCCCC
Confidence            68999999999999999999 998    99999 8654322 1233476553  22222  468988886  4544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.28  E-value=0.11  Score=44.70  Aligned_cols=47  Identities=26%  Similarity=0.352  Sum_probs=38.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ..+|.|+|+|.+|...++.+...|.   ..|++. ++++++.+.+++.|+.
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~---~~Vi~~-~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGA---ARVVAA-DPSPDRRELALSFGAT  167 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCc
Confidence            4589999999999998887777786   138888 9999999888888864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.27  E-value=0.1  Score=40.99  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCeEEEEc-c-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----H---HHHHH----HHcC--ceeccCchhhhcCCCE
Q 023866           10 SFILGFIG-A-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----K---RRDAF----ESIG--VKVLSDNNAVVEYSDV   74 (276)
Q Consensus        10 ~~kIgiIG-~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~---~~~~l----~~~g--~~~~~~~~~~~~~aDv   74 (276)
                      ..||+||| . +++..+++..+.+-|.    +++++ ....    .   -.+..    .+.|  +.++++..++++++|+
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV   76 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence            57999999 3 8999999999999998    88887 5433    1   12111    2234  5677888899999999


Q ss_pred             EEEeeCc
Q 023866           75 VVFSVKP   81 (276)
Q Consensus        75 I~lav~~   81 (276)
                      |..-.-.
T Consensus        77 vy~~~~~   83 (158)
T PF00185_consen   77 VYTDRWQ   83 (158)
T ss_dssp             EEEESSS
T ss_pred             EEEcCcc
Confidence            8887643

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.20  E-value=0.13  Score=45.64  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC---CHHHHHHHHHcCceeccCchh------hhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDvI~lav~   80 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ +|   ++++.+.+++.|+.......+      .....|+||-++-
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g  247 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG  247 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence            4689999999999998888777887    88888 87   678888887788764321111      1234688888885


Q ss_pred             cc-cHHHHHHHH
Q 023866           81 PQ-VDKAAVITE   91 (276)
Q Consensus        81 ~~-~~~~vl~~~   91 (276)
                      .. .+.+.+.-+
T Consensus       248 ~~~~~~~~~~~l  259 (355)
T cd08230         248 VPPLAFEALPAL  259 (355)
T ss_pred             CHHHHHHHHHHc
Confidence            33 344444333

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.20  E-value=0.058  Score=49.64  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHH--HHHHHHHcCceec-c-CchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVL-S-DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~-~-~~~~~~~~aDvI~lav   79 (276)
                      .++|.|||+|..|.+-++.|++.  |+    +|+++ |.++.  ..+.+.+ |+.+. . ...+.+.++|+||.+-
T Consensus         7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp   76 (438)
T PRK04663          7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP   76 (438)
T ss_pred             CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence            36899999999999999999987  56    89999 86542  2234544 77653 2 2344467899998864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.20  E-value=0.022  Score=51.23  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ++++.|||.|.|. |-+|+.++..|.+.|+    +|++. +|..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~----~V~~v-~r~~   55 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGH----YIIAS-DWKK   55 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCC----EEEEE-Eecc
Confidence            4457899999987 9999999999999999    99998 7754

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=95.19  E-value=0.073  Score=49.11  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=46.8

Q ss_pred             eEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceec--cCchhhhcCCCEEEEe--eCcc
Q 023866           12 ILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL--SDNNAVVEYSDVVVFS--VKPQ   82 (276)
Q Consensus        12 kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~aDvI~la--v~~~   82 (276)
                      +|-|||.|.+|. ++|..|.+.|+    +|+++ |.++.  ..+.+++.|+.+.  .+......++|+||.+  +|+.
T Consensus         1 ~~hfigigG~gm~~la~~l~~~G~----~V~~~-D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~   73 (448)
T TIGR01081         1 HIHILGICGTFMGGLAMIAKQLGH----EVTGS-DANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRG   73 (448)
T ss_pred             CEEEEEECHHhHHHHHHHHHhCCC----EEEEE-CCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCC
Confidence            478999999995 57888889999    99999 87542  3345666788764  2333434579999886  4554

Alternate name: murein tripeptide ligase

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.18  E-value=0.034  Score=51.50  Aligned_cols=40  Identities=20%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         3 ~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..++++..++|+|||+|.-|.+.|..|.+.|+    +++++ +++
T Consensus         3 ~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~~   42 (461)
T PLN02172          3 PAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ERE   42 (461)
T ss_pred             CcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ecC
Confidence            33566678999999999999999999999998    77777 553

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.18  E-value=0.078  Score=44.69  Aligned_cols=50  Identities=16%  Similarity=0.093  Sum_probs=40.5

Q ss_pred             CCCCCCC-CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            1 MDAFPIP-AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         1 ~~~~~~~-~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |++++++ ++.++|-|+|+ |.+|..+++.|.+.|+    +|++. +|+.++.+.+.
T Consensus         1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~----~vv~~-~r~~~~~~~~~   52 (255)
T PRK06113          1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGA----SVVVS-DINADAANHVV   52 (255)
T ss_pred             CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence            7788665 45678888865 8999999999999998    89888 88887765543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.17  E-value=0.1  Score=48.79  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=46.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-----------------HH----HHHHHHcCceecc----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-----------------KR----RDAFESIGVKVLS----   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-----------------~~----~~~l~~~g~~~~~----   63 (276)
                      ..++|.|||.|..|...|..|.+.|+    +|+++ ++.+                 +.    .+.+++.|+.+..    
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~----~V~v~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v  216 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGH----TVTVF-EREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEI  216 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEe
Confidence            44799999999999999999999998    89988 7543                 11    2334446765421    


Q ss_pred             ----CchhhhcCCCEEEEee
Q 023866           64 ----DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 ----~~~~~~~~aDvI~lav   79 (276)
                          +..+....+|.||+++
T Consensus       217 ~~~~~~~~~~~~~d~VilAt  236 (485)
T TIGR01317       217 GVDISADELKEQFDAVVLAG  236 (485)
T ss_pred             CCccCHHHHHhhCCEEEEcc
Confidence                1122334689999998

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=95.15  E-value=0.027  Score=47.74  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEE
Q 023866           17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVF   77 (276)
Q Consensus        17 G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~l   77 (276)
                      |.|.+|+++...|.+.||    +|++. .|++.+.+......+...+...+... .+|+||=
T Consensus         6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavIN   62 (297)
T COG1090           6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVIN   62 (297)
T ss_pred             cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEEE
Confidence            679999999999999999    99999 89888766544333332233334344 6999985

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.15  E-value=0.078  Score=47.16  Aligned_cols=69  Identities=13%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCcee-ccC------chhhhcCC
Q 023866            6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKV-LSD------NNAVVEYS   72 (276)
Q Consensus         6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~-~~~------~~~~~~~a   72 (276)
                      .+.+.|||.|.| +|-+|+.+++.|++.|+    +|++. +|++++.+.+..     .++.. ..|      ..+++++.
T Consensus         6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   80 (353)
T PLN02896          6 RESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC   80 (353)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCC
Confidence            345678999998 59999999999999998    99988 888776554432     12221 111      23445678


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||-+.
T Consensus        81 d~Vih~A   87 (353)
T PLN02896         81 DGVFHVA   87 (353)
T ss_pred             CEEEECC
Confidence            8888765

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.14  E-value=0.028  Score=48.29  Aligned_cols=62  Identities=21%  Similarity=0.192  Sum_probs=44.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---e-ccC---chhhh------cC-CCEEE
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---V-LSD---NNAVV------EY-SDVVV   76 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~-~~~---~~~~~------~~-aDvI~   76 (276)
                      +|.|+|+ |.+|+.+++.|++.|+    +|++. .|++++...   .++.   . ..|   ..+++      .. +|.||
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence            5889988 9999999999999999    99999 898875432   2221   1 112   22333      45 89999


Q ss_pred             EeeCc
Q 023866           77 FSVKP   81 (276)
Q Consensus        77 lav~~   81 (276)
                      ++.++
T Consensus        73 ~~~~~   77 (285)
T TIGR03649        73 LVAPP   77 (285)
T ss_pred             EeCCC
Confidence            88763

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.10  E-value=0.13  Score=44.55  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCch
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN   66 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~   66 (276)
                      ..+++|+|+|.+|.+.+.+-..+|-   .+|+.+ |.|+++.+..++.|++-+-++.
T Consensus       193 GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~  245 (375)
T KOG0022|consen  193 GSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK  245 (375)
T ss_pred             CCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence            4689999999999999999988886   589999 9999999999999987544444

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.08  E-value=0.064  Score=46.15  Aligned_cols=55  Identities=15%  Similarity=0.216  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +...+++.|||-|. .|.+++.-|.+.|.    .|+++ ++.              +.+..+.+++||+||.++.
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~--------------T~~l~~~~~~ADIvi~avG  211 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRF--------------TKNLRHHVRNADLLVVAVG  211 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECC--------------CCCHHHHHhhCCEEEEcCC
Confidence            34568999999998 99999999988887    89998 654              2245667899999999993

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.07  E-value=0.088  Score=50.16  Aligned_cols=72  Identities=13%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             CCCC-CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCcee-ccC---chhhhcCCCEEEE
Q 023866            4 FPIP-AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF   77 (276)
Q Consensus         4 ~~~~-~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDvI~l   77 (276)
                      .|.+ ++.+||||||.|..|..|+....+.|+    +|.++ +.+++. ...+.+.-+.. ..|   ..++++++|+|..
T Consensus        15 ~~~~~~~~k~IgIIGgGqlg~mla~aA~~lG~----~Vi~l-d~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~   89 (577)
T PLN02948         15 KPVHGVSETVVGVLGGGQLGRMLCQAASQMGI----KVKVL-DPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTV   89 (577)
T ss_pred             ccccCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEE
Confidence            3444 567899999999999999999999999    99999 877642 22222211111 123   2344667898876


Q ss_pred             eeC
Q 023866           78 SVK   80 (276)
Q Consensus        78 av~   80 (276)
                      ...
T Consensus        90 e~e   92 (577)
T PLN02948         90 EIE   92 (577)
T ss_pred             ecC
Confidence            643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.07  E-value=0.12  Score=47.62  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=32.7

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |.+...++|.|||.|.-|.+.|..|.+.|+    +|+++ ++.
T Consensus       128 ~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~----~V~vi-e~~  165 (449)
T TIGR01316       128 KAPSTHKKVAVIGAGPAGLACASELAKAGH----SVTVF-EAL  165 (449)
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecC
Confidence            344567899999999999999999999998    89888 764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.06  E-value=0.062  Score=46.97  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHHc-C----cee-------ccCchhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESI-G----VKV-------LSDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~-g----~~~-------~~~~~~~~~~a   72 (276)
                      +.++|.|-|+ |-+|+.++..|++.||    .|... -|+++..+   .+++. +    +.+       .++..++++.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc   79 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC   79 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence            5689999987 9999999999999999    99998 67776532   34441 1    221       23456788999


Q ss_pred             CEEEEeeC
Q 023866           73 DVVVFSVK   80 (276)
Q Consensus        73 DvI~lav~   80 (276)
                      |.||=+-.
T Consensus        80 dgVfH~As   87 (327)
T KOG1502|consen   80 DGVFHTAS   87 (327)
T ss_pred             CEEEEeCc
Confidence            99998653

>PLN02686 cinnamoyl-CoA reductase

Probab=95.05  E-value=0.07  Score=47.88  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=36.6

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +..+++++|.|.|+ |-+|+.+++.|++.|+    +|++. .|+.++.+.+
T Consensus        48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~----~V~~~-~r~~~~~~~l   93 (367)
T PLN02686         48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGY----SVRIA-VDTQEDKEKL   93 (367)
T ss_pred             ccCCCCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence            34456789999976 9999999999999999    99887 7777665544

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=95.04  E-value=0.069  Score=46.72  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec----
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL----   62 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~----   62 (276)
                      ||.+||+|.+|+.++++|...|.   .+++++ |.+.                   .|++    .+++  ..+.+.    
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~   76 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA   76 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence            68999999999999999999997   477777 5432                   1122    2222  223221    


Q ss_pred             --cC---chhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           63 --SD---NNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 --~~---~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                        .+   ..+..++.|+||.|+.....+..+.+.
T Consensus        77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~  110 (312)
T cd01489          77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKM  110 (312)
T ss_pred             cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence              11   235678999999999765555444443

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.04  E-value=0.11  Score=48.38  Aligned_cols=69  Identities=16%  Similarity=0.053  Sum_probs=48.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-H---HHHHHHHcCceec-cCchhhhcCCCEEEEee--Cc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-K---RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV--KP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~---~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav--~~   81 (276)
                      +.+||+|+|+|.=|.+.++.|.+.|.    +|+++ |.++ .   ..+++.+.+..+. ....+.+.++|+||.+-  |+
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~   81 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISP   81 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCC
Confidence            45799999999999999999999998    99999 8432 1   2224544333222 22345567899999964  54


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus        82 ~   82 (468)
T PRK04690         82 Y   82 (468)
T ss_pred             C
Confidence            4

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=95.02  E-value=0.038  Score=52.26  Aligned_cols=43  Identities=23%  Similarity=0.219  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |++.+.++...+|.|||+|.-|.++|..|.+.|+    +|.++ +|.+
T Consensus         1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~G~----~v~v~-Er~~   43 (538)
T PRK06183          1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQYGV----RVLVL-ERWP   43 (538)
T ss_pred             CCCCCCccCCCCEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCC
Confidence            7777666777899999999999999999999998    99998 8775

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.01  E-value=0.076  Score=41.27  Aligned_cols=42  Identities=7%  Similarity=0.213  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCC-CHHHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHS-NLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r-~~~~~~~l~~   56 (276)
                      +||+|+|+|+||..+++.+.+. +.    ++...+++ +++....+.+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~----~lvai~d~~~~~~~a~ll~   44 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDI----EVVAINDLTDPETLAHLLK   44 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC----EEEEeecCCCHHHHHHHhc
Confidence            5899999999999999988753 33    66654373 6666555544

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.00  E-value=0.075  Score=45.88  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce--ec-c---CchhhhcCCCEEEEee--C
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VL-S---DNNAVVEYSDVVVFSV--K   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~-~---~~~~~~~~aDvI~lav--~   80 (276)
                      .-||.|||.|..|.-=|+-...-|-    +|++. |+|.+|++++.. ++.+  .. +   ..++.+.++|+||=+|  |
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp  242 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP  242 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence            4589999999999988876666666    99999 999999998887 4543  22 2   2456788999999998  2


Q ss_pred             ----cc-cHHHHHHHH
Q 023866           81 ----PQ-VDKAAVITE   91 (276)
Q Consensus        81 ----~~-~~~~vl~~~   91 (276)
                          |. ..++.++++
T Consensus       243 gakaPkLvt~e~vk~M  258 (371)
T COG0686         243 GAKAPKLVTREMVKQM  258 (371)
T ss_pred             CCCCceehhHHHHHhc
Confidence                22 245666665

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.97  E-value=0.035  Score=50.11  Aligned_cols=36  Identities=14%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ..++|.|||+|..|.++|..|.+.|+    +|+++ +|+++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence            34789999999999999999999999    99999 88754

>PRK08017 oxidoreductase; Provisional

Probab=94.96  E-value=0.08  Score=44.49  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=37.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      ++|-|.|+ |.+|.++++.|.+.|+    +|.++ +|++++.+.+.+.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~~~   47 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSLGF   47 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhCCC
Confidence            47999998 9999999999999998    99998 999988877665443

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=94.94  E-value=1.7  Score=35.81  Aligned_cols=161  Identities=15%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             CceeccCchhhhcCCCEEEEeeC-----cccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-----CCcEEEE
Q 023866           58 GVKVLSDNNAVVEYSDVVVFSVK-----PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-----HSRFIRV  127 (276)
Q Consensus        58 g~~~~~~~~~~~~~aDvI~lav~-----~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-----~~~vv~~  127 (276)
                      |+.++++..++++++|+|+.=.|     |+.++.++..+.      ...++...-.+ +..++.+.+.     +-++...
T Consensus       126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddip------egaivthacti-pttkf~kifed~gredlnvtsy  198 (343)
T COG4074         126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIP------EGAIVTHACTI-PTTKFKKIFEDMGREDLNVTSY  198 (343)
T ss_pred             eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCC------CCceEeeeccc-chHHHHHHHHHhCccccceecc
Confidence            56677888999999999999876     344555555551      02233333444 5555555443     2466777


Q ss_pred             ecCccccccCcceEeecCCCCCHHHHHHHHHHhhh-cCceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH-HcCCC
Q 023866          128 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGS-VGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGV-AAGLP  205 (276)
Q Consensus       128 ~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~-~G~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~-~~Gl~  205 (276)
                      ||..-.. -+|...+.-| -.+++..+.+-++=+. -|..+.+....+..+.-+++...+.+|.-+-+.-++.. -.|-|
T Consensus       199 hpg~vpe-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgap  276 (343)
T COG4074         199 HPGTVPE-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAP  276 (343)
T ss_pred             CCCCCcc-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            7764333 2344434322 2467777666665433 23445555444444333333223333332333334432 46777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 023866          206 RELALGLASQTVLGAASMVTKS  227 (276)
Q Consensus       206 ~~~a~~~~~~~~~g~~~~~~~~  227 (276)
                      .+-+.-+....+.....++.+.
T Consensus       277 adfaqmma~eal~qi~~lmee~  298 (343)
T COG4074         277 ADFAQMMAVEALQQIAKLMEEE  298 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh
Confidence            6666666667777777776543

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=94.89  E-value=0.21  Score=43.72  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CCCCC--CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceeccCchhhhcC--CCEE
Q 023866            3 AFPIP--AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVLSDNNAVVEY--SDVV   75 (276)
Q Consensus         3 ~~~~~--~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~--aDvI   75 (276)
                      |+|..  .+..||-+-|. |.-|+..++.+++.|-    +|..-+++..  +..+   ..|+.++.+..|+.+.  +|+.
T Consensus        20 ~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt----~iv~GV~Pgkgg~~v~---~~Gvpvy~sv~ea~~~~~~D~a   92 (317)
T PTZ00187         20 SAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGT----KMVGGVNPKKAGTTHL---KHGLPVFATVKEAKKATGADAS   92 (317)
T ss_pred             cCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCC----cEEEEECCCCCCceEe---cCCccccCCHHHHhcccCCCEE
Confidence            44444  35678999998 9999999999999986    6664436553  2221   1388888899998887  9999


Q ss_pred             EEeeCcccHHHHHHHHhhcc
Q 023866           76 VFSVKPQVDKAAVITEEAFG   95 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~   95 (276)
                      +++||+..+.+.+.+..+.|
T Consensus        93 vI~VPa~~v~dai~Ea~~aG  112 (317)
T PTZ00187         93 VIYVPPPHAASAIIEAIEAE  112 (317)
T ss_pred             EEecCHHHHHHHHHHHHHcC
Confidence            99999999888888774333

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=94.87  E-value=0.2  Score=42.92  Aligned_cols=100  Identities=11%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHH--HHHHHHHcCcee------ccCchhhhcC-CC-EEEEe
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFS   78 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-vI~la   78 (276)
                      .||.|.|+ |+||+..++...+.++    ++... +++...  ....+...++.+      ..+..++... +| |+|=-
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDF   76 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDY   76 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEEC
Confidence            37899998 9999999999888777    76653 254322  222222235555      5566666665 89 77777


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHc
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWT  119 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l  119 (276)
                      +.|+.+.+.+....+.+    .+++....|. +.++++++.
T Consensus        77 T~P~~~~~n~~~~~~~g----v~~ViGTTG~-~~~~~~~l~  112 (275)
T TIGR02130        77 THPSAVNDNAAFYGKHG----IPFVMGTTGG-DREALAKLV  112 (275)
T ss_pred             CChHHHHHHHHHHHHCC----CCEEEcCCCC-CHHHHHHHH
Confidence            88888777766553323    5666666888 777776653

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.86  E-value=0.055  Score=37.04  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ||.|||.|..|.-+|..|.+.|.    +|+++ .|++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli-~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK----EVTLI-ERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc----EEEEE-eccc
Confidence            68999999999999999999998    99998 6654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.85  E-value=0.082  Score=38.47  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH---HcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      -+..|++.|.+.|.    +|.++ |..-.......   ..++....+..++++.+|+||++++...+..
T Consensus        18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~   81 (106)
T PF03720_consen   18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRE   81 (106)
T ss_dssp             HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGC
T ss_pred             HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhc
Confidence            45678899999998    99999 88765544433   2578888888899999999999998776654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.74  E-value=0.5  Score=41.17  Aligned_cols=155  Identities=12%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---cC------------------ce---eccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG------------------VK---VLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g------------------~~---~~~~   64 (276)
                      ++.++-++|+|...--+|.-+...|-   .++-++ +|-..+.+.+.+   .+                  +.   ...+
T Consensus         3 ~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd   78 (431)
T COG4408           3 NMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKD   78 (431)
T ss_pred             cccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhh
Confidence            57889999999999999999887764   367777 775444444432   11                  00   1235


Q ss_pred             chhhhcCCCEEEEeeCcccHHHHHHHHhh---ccccccCCcccCCCCcc-cHHHHHHHcC-CCcEEEE------------
Q 023866           65 NNAVVEYSDVVVFSVKPQVDKAAVITEEA---FGFCCCRSEIERPSGLQ-RWSRWVEWTG-HSRFIRV------------  127 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~---~~~~~~~~~l~~~~g~~-~~~~l~~~l~-~~~vv~~------------  127 (276)
                      .+++..+-|-+|+|||.++..+|+.++.-   .++ +..-.+++.-|.. -++.+...++ ++.++..            
T Consensus        79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~v-k~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~  157 (431)
T COG4408          79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQV-KSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDA  157 (431)
T ss_pred             HHHhhchhheEEEEeecHHHHHHHhcCCHhHhccc-cEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecc
Confidence            66777889999999999999999988721   011 0011234432220 1233322222 3333332            


Q ss_pred             -ecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866          128 -MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus       128 -~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                       -||+.-..+----++.++...+....+.+..+|+..|-.++
T Consensus       158 ~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~  199 (431)
T COG4408         158 EQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVE  199 (431)
T ss_pred             cCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceE
Confidence             13322211100123334445566777889999999996543

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.74  E-value=0.043  Score=49.85  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .+|.|||.|.+|.+.|..|.+.|+    +|+++ +|+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence            589999999999999999999998    99999 8874

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.72  E-value=0.11  Score=47.97  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=43.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-Cce-eccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVK-VLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~aDvI~la   78 (276)
                      ..+||+|+|+|.-|.+.++.|. .|.    +|+++ |.+++....+.+. ... ......+...++|+||.+
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~-~g~----~v~v~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQ-NKY----DVIVY-DDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHh-CCC----EEEEE-CCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC
Confidence            4579999999999999999888 488    99999 8654433323221 111 112233446689999886

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=94.66  E-value=0.089  Score=43.94  Aligned_cols=52  Identities=21%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             EEEeCCCHHHHHHHHH-cCceeccCchhhh-cCCCEEEEeeCcccHHHHHHHHhh
Q 023866           41 CTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVDKAAVITEEA   93 (276)
Q Consensus        41 ~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~vl~~~~~   93 (276)
                      .+| |+++++++.+.+ .|+..+++.++++ .+.|+|++|+|++...++.....+
T Consensus         6 aV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~   59 (229)
T TIGR03855         6 AVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK   59 (229)
T ss_pred             EEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence            466 999999988877 7888888888875 579999999999988888776643

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.65  E-value=0.13  Score=51.68  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceec
Q 023866            4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVL   62 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~   62 (276)
                      +|.-...++|+|||.|.-|.+-|..|.+.||    .|++| .|+..                     +.+.+.+.|+.+.
T Consensus      1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh----~v~vy-er~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~ 1853 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGH----TVTVY-ERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFV 1853 (2142)
T ss_pred             CcccccCcEEEEEccCchhhhHHHHHhhcCc----EEEEE-EecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEE
Confidence            3444567899999999999999999999999    99999 77521                     2233444677643


Q ss_pred             c--------CchhhhcCCCEEEEee
Q 023866           63 S--------DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        63 ~--------~~~~~~~~aDvI~lav   79 (276)
                      +        +..++-+.-|.|++|+
T Consensus      1854 tn~eigk~vs~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1854 TNTEIGKHVSLDELKKENDAIVLAT 1878 (2142)
T ss_pred             eeccccccccHHHHhhccCeEEEEe
Confidence            2        3456677899999997

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.64  E-value=0.12  Score=44.14  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=37.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      +++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+.++
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~~   49 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEGL   49 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCc
Confidence            56788887 9999999999999998    99999 999988887766543

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.63  E-value=0.23  Score=43.53  Aligned_cols=47  Identities=17%  Similarity=0.283  Sum_probs=41.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV   61 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~   61 (276)
                      .+++|+|+|.+|.+-..+...+|-   .+|... |.+++|.+..+++|.+-
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAv-D~~~~Kl~~A~~fGAT~  233 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAV-DINPEKLELAKKFGATH  233 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCC---ceEEEE-eCCHHHHHHHHhcCCce
Confidence            579999999999999999988875   467777 99999999999999863

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.62  E-value=0.19  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...++|.|||.|.-|.+.|..|.+.|+    +|+++ +++
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~----~V~li-e~~  172 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY----DVTIF-EAR  172 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC----eEEEE-ccC
Confidence            456899999999999999999999998    99998 765

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=94.61  E-value=0.11  Score=43.85  Aligned_cols=70  Identities=14%  Similarity=0.002  Sum_probs=52.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH------cCc----eeccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------IGV----KVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~g~----~~~~~~~~~~~~aDvI~lav   79 (276)
                      ..-..++|.|..+-.......+.-- .-.+|.+| +|+++.++.+.+      ..+    ..+.+.++++..+|+|+.|+
T Consensus       138 S~vL~i~GsG~qA~~hi~ih~~~~p-slreVrIw-nht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at  215 (333)
T KOG3007|consen  138 SCVLTIFGSGLQAFWHIYIHIKLIP-SLREVRIW-NHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT  215 (333)
T ss_pred             ceEEEEEcccchhHHHHHHHHHhcc-cceEEEee-cCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence            3457899999999988877665421 13589999 999998877765      123    23566788899999999998


Q ss_pred             Cc
Q 023866           80 KP   81 (276)
Q Consensus        80 ~~   81 (276)
                      +.
T Consensus       216 ls  217 (333)
T KOG3007|consen  216 LS  217 (333)
T ss_pred             cc
Confidence            64

>PRK05717 oxidoreductase; Validated

Probab=94.60  E-value=0.14  Score=43.10  Aligned_cols=50  Identities=16%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |+.+--+.+.+++-|.|. |.+|..+++.|.+.|+    +|.+. +|++++.+.+.
T Consensus         1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~   51 (255)
T PRK05717          1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKVA   51 (255)
T ss_pred             CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHH
Confidence            444333345677888875 9999999999999998    99998 88887665543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.60  E-value=0.11  Score=45.24  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHH-c----Cce-----ec--cCchhhhcCC
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFES-I----GVK-----VL--SDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~-~----g~~-----~~--~~~~~~~~~a   72 (276)
                      +.++|.|.| +|-+|+.+++.|++.|+    +|++. .|+++...   .+.. .    .+.     +.  .+..++++++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   77 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY----TVKAT-VRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGC   77 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC----EEEEE-EcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCC
Confidence            457899998 59999999999999999    99888 77654322   2211 1    122     11  1233456788


Q ss_pred             CEEEEeeC
Q 023866           73 DVVVFSVK   80 (276)
Q Consensus        73 DvI~lav~   80 (276)
                      |+||-+..
T Consensus        78 d~Vih~A~   85 (322)
T PLN02662         78 EGVFHTAS   85 (322)
T ss_pred             CEEEEeCC
Confidence            99888753

>PRK07236 hypothetical protein; Provisional

Probab=94.55  E-value=0.052  Score=48.92  Aligned_cols=37  Identities=11%  Similarity=-0.084  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |..++|.|||+|.-|.++|..|.+.|+    +|+++ +|.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGW----DVDVF-ERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCCC
Confidence            567899999999999999999999999    99999 87653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.54  E-value=0.057  Score=49.04  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=35.0

Q ss_pred             CCCCCC-CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            3 AFPIPA-ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         3 ~~~~~~-~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |.|..+ ...+|.|||+|.-|.++|..|.++|+    +|+++ ++.+.
T Consensus        10 ~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~   52 (415)
T PRK07364         10 TLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGL----RIALI-EAQPA   52 (415)
T ss_pred             CCCCCCccccCEEEECcCHHHHHHHHHHhcCCC----EEEEE-ecCCc
Confidence            456654 35689999999999999999999999    99999 87653

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.12  Score=43.88  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=51.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav~   80 (276)
                      |+|.+.|+ |.+|+.+...|++.|+    +|.+. .|++++...+. .++.+.       .+....++..|.++++.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~----~v~~~-~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~   72 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH----EVRAA-VRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG   72 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC----EEEEE-EeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence            57889965 9999999999999999    99999 99999988887 555432       123345678899888887

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.52  E-value=0.13  Score=44.91  Aligned_cols=67  Identities=10%  Similarity=0.100  Sum_probs=45.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      .||+|+|+ |-.|.-+.+.|.+..+   -++.....++.          .. ..+..++.+++|++|+|+|.....+...
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~---~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~   67 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDD---IELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDAAREAVS   67 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCC---eEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence            48999987 9999999998876532   23432213321          11 1134455678999999999988777776


Q ss_pred             HH
Q 023866           90 TE   91 (276)
Q Consensus        90 ~~   91 (276)
                      .+
T Consensus        68 ~~   69 (310)
T TIGR01851        68 LV   69 (310)
T ss_pred             HH
Confidence            65

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.51  E-value=0.036  Score=50.19  Aligned_cols=38  Identities=11%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      .+.+||.|+|+ |.+|+.+++.|++.|+    +|++. .|++++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~   96 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG   96 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence            45689999986 9999999999999999    99998 888754

>PRK13984 putative oxidoreductase; Provisional

Probab=94.49  E-value=0.21  Score=47.91  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc--
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS--   63 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~--   63 (276)
                      +...++|.|||+|..|.+.|..|.+.|+    +|+++ ++.+.                     ..+.+++.|+.+..  
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~----~v~vi-e~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~  354 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY----EVTVY-ESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT  354 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence            3456889999999999999999999999    99988 76531                     13345556654321  


Q ss_pred             ------CchhhhcCCCEEEEeeC
Q 023866           64 ------DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        64 ------~~~~~~~~aDvI~lav~   80 (276)
                            +..+....+|.||+++-
T Consensus       355 ~v~~~~~~~~~~~~yD~vilAtG  377 (604)
T PRK13984        355 RVGKDIPLEELREKHDAVFLSTG  377 (604)
T ss_pred             EeCCcCCHHHHHhcCCEEEEEcC
Confidence                  11233347999999984

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=94.46  E-value=0.24  Score=43.17  Aligned_cols=66  Identities=14%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHHHcCc--eeccCchhhhcCCCEEEE
Q 023866            8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESIGV--KVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~l   77 (276)
                      .+..||+|+|-|   ++..+++..+.+-|.    +|.+. ...     ++-.+.+++.|.  .+++|+.++++++|+|..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~----~v~~~-~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt  222 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGV----EVYLI-SPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV  222 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCC----EEEEE-CCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence            356899999995   999999999999998    99887 432     122344444564  457888999999999987


Q ss_pred             e
Q 023866           78 S   78 (276)
Q Consensus        78 a   78 (276)
                      -
T Consensus       223 ~  223 (301)
T TIGR00670       223 T  223 (301)
T ss_pred             C
Confidence            3

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.12  Score=44.29  Aligned_cols=43  Identities=16%  Similarity=0.228  Sum_probs=36.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+++|-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~   46 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA   46 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence            4567888876 9999999999999999    99999 999988776655

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.13  Score=42.82  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         7 ~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      .++.+++-|.|+ |.+|..+++.|.+.|+    +|.+. +|++++.+.+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~   47 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGA----TVILV-ARHQKKLEKVY   47 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCChHHHHHHH
Confidence            355678888876 9999999999999998    99999 99988766543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.33  E-value=0.15  Score=51.55  Aligned_cols=66  Identities=9%  Similarity=0.014  Sum_probs=48.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS----   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~----   63 (276)
                      ..+||+|||+|.-|.+-|..|.+.||    +|+++ ++...                     ..+.+++.|+.+..    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~----~VtVf-E~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v  379 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF----PVTVF-EAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV  379 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-eeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence            46899999999999999999999999    99999 76431                     12345556765321    


Q ss_pred             ----Cchhhhc-CCCEEEEee
Q 023866           64 ----DNNAVVE-YSDVVVFSV   79 (276)
Q Consensus        64 ----~~~~~~~-~aDvI~lav   79 (276)
                          +.+++.+ ..|.||+++
T Consensus       380 G~dit~~~l~~~~yDAV~LAt  400 (944)
T PRK12779        380 GKTATLEDLKAAGFWKIFVGT  400 (944)
T ss_pred             ccEEeHHHhccccCCEEEEeC
Confidence                2334433 589999998

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.32  E-value=0.17  Score=42.60  Aligned_cols=50  Identities=16%  Similarity=0.135  Sum_probs=38.8

Q ss_pred             CCCCCCC-CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            1 MDAFPIP-AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         1 ~~~~~~~-~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |+-.+.. .+.++|-|.|+ |.+|.++++.|.+.|+    +|+++ +|++++.+.+.
T Consensus         1 ~~~~~~~~~~~k~ilItGas~~IG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~   52 (256)
T PRK06124          1 MSILQRFSLAGQVALVTGSARGLGFEIARALAGAGA----HVLVN-GRNAATLEAAV   52 (256)
T ss_pred             CCcccccCCCCCEEEEECCCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHH
Confidence            4444544 35678888876 8999999999999998    99999 99987765543

>PLN00198 anthocyanidin reductase; Provisional

Probab=94.31  E-value=0.11  Score=45.79  Aligned_cols=40  Identities=20%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866            6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus         6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      -|+++++|.|.| +|-+|+.++..|++.|+    +|.+. .|+.+.
T Consensus         5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g~----~V~~~-~r~~~~   45 (338)
T PLN00198          5 TPTGKKTACVIGGTGFLASLLIKLLLQKGY----AVNTT-VRDPEN   45 (338)
T ss_pred             cCCCCCeEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCCCC
Confidence            456788999997 69999999999999998    99877 666543

>PRK05868 hypothetical protein; Validated

Probab=94.30  E-value=0.06  Score=48.40  Aligned_cols=35  Identities=11%  Similarity=0.057  Sum_probs=31.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |++|.|||.|.-|.++|..|.+.|+    +|+++ ++.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~----~v~vi-E~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY----SVTMV-ERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-cCCCC
Confidence            5789999999999999999999999    99999 87654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.30  E-value=0.16  Score=42.74  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      .+.+++.|.|+ |.+|..+++.|++.|+    +|.+. +|++++.+.+.
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~   51 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAA   51 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence            34578999986 9999999999999999    99999 99987765443

>PRK06847 hypothetical protein; Provisional

Probab=94.27  E-value=0.064  Score=47.97  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ++++|.|||+|.-|.++|..|.+.|+    +|+++ +++++
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~----~v~v~-E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI----AVDLV-EIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCCC
Confidence            46789999999999999999999998    99999 87653

>PLN02650 dihydroflavonol-4-reductase

Probab=94.27  E-value=0.12  Score=45.84  Aligned_cols=67  Identities=9%  Similarity=0.085  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC----ce-ecc------CchhhhcC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VK-VLS------DNNAVVEY   71 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g----~~-~~~------~~~~~~~~   71 (276)
                      ++.++|.|.|+ |-+|+.++..|++.|+    +|++. .|++++.+.+..    .+    +. +..      +..+++++
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~   77 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGY----TVRAT-VRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRG   77 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCC----EEEEE-EcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhC
Confidence            46789999986 9999999999999999    99988 777655443322    11    11 111      22355667


Q ss_pred             CCEEEEee
Q 023866           72 SDVVVFSV   79 (276)
Q Consensus        72 aDvI~lav   79 (276)
                      +|.||-+.
T Consensus        78 ~d~ViH~A   85 (351)
T PLN02650         78 CTGVFHVA   85 (351)
T ss_pred             CCEEEEeC
Confidence            88888764

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=94.24  E-value=0.11  Score=46.70  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCcee-ccC---chhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDvI~l   77 (276)
                      +++|||||.|..|..|+....+.|+    +|.++ +.++.. ...+.+.-+.. ..|   ..++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~----~v~~~-d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGY----KVIVL-DPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            4789999999999999999999999    99999 876543 22222211111 122   2345667887644

>PRK06753 hypothetical protein; Provisional

Probab=94.23  E-value=0.061  Score=48.13  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+|.|||+|.-|.+.|..|.+.|+    +|+++ ++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~----~v~v~-E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGH----EVKVF-EKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ecCCc
Confidence            689999999999999999999999    99999 87764

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.22  E-value=0.13  Score=42.21  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866            8 AESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         8 ~~~~kIgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      .+.++|.|.||  |.+|.++++-|.+.|+    .|+.+ .|+.++..+|. +.|+....  .+ +         .+|+.+
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~----~V~At-aR~~e~M~~L~~~~gl~~~k--LD-V---------~~~~~V   67 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGY----LVYAT-ARRLEPMAQLAIQFGLKPYK--LD-V---------SKPEEV   67 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCe----EEEEE-ccccchHhhHHHhhCCeeEE--ec-c---------CChHHH
Confidence            35688999999  9999999999999999    99999 99999998888 47765431  01 1         145666


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      .++..++.
T Consensus        68 ~~v~~evr   75 (289)
T KOG1209|consen   68 VTVSGEVR   75 (289)
T ss_pred             HHHHHHHh
Confidence            67766663

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.15  E-value=0.091  Score=45.24  Aligned_cols=53  Identities=13%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      -+.+++.|||-++ .|.+++.-|.+.|.    .|+++ +...              .+..+.+++||+||.|+
T Consensus       162 l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~Av  215 (287)
T PRK14176        162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVAT  215 (287)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEcc
Confidence            4568999999998 99999999988887    89998 6321              24556788999999987

>PRK05884 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.14  Score=42.44  Aligned_cols=41  Identities=12%  Similarity=0.214  Sum_probs=35.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ||+-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~----~v~~~-~r~~~~~~~~~~   42 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH----KVTLV-GARRDDLEVAAK   42 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            47888977 9999999999999998    99999 999888776644

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.15  Score=42.29  Aligned_cols=43  Identities=12%  Similarity=0.189  Sum_probs=36.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ..++|.|+|+ |.+|..+++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~   48 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAAA   48 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHHH
Confidence            3468999976 9999999999999998    99999 999887765543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.08  E-value=0.16  Score=42.17  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      ..++|.|.|+ |.+|..+++.|.+.|+    +|+++ +|++++.+.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~   45 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEAL   45 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHH
Confidence            4468999986 9999999999999999    89988 9998775543

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=94.07  E-value=0.16  Score=48.00  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHHHHH---HH----HHc--Cce-------eccCchhhhcCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA-VHSNLKRRD---AF----ESI--GVK-------VLSDNNAVVEYS   72 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~~~~---~l----~~~--g~~-------~~~~~~~~~~~a   72 (276)
                      ..||++||.|.+|+.++..|...|. .  +|.+. .|+-+..+.   ++    ++.  ++.       ...+..++++..
T Consensus       129 ~akVlVlG~Gg~~s~lv~sL~~sG~-~--~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~  205 (637)
T TIGR03693       129 NAKILAAGSGDFLTKLVRSLIDSGF-P--RFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA  205 (637)
T ss_pred             cccEEEEecCchHHHHHHHHHhcCC-C--cEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence            4689999999999999999999997 2  45332 155443322   22    221  221       123455778999


Q ss_pred             CEEEEeeCccc
Q 023866           73 DVVVFSVKPQV   83 (276)
Q Consensus        73 DvI~lav~~~~   83 (276)
                      |+|+..+..+.
T Consensus       206 DiVi~vsDdy~  216 (637)
T TIGR03693       206 DWVLYVSDNGD  216 (637)
T ss_pred             cEEEEECCCCC
Confidence            99999996444

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=94.06  E-value=0.17  Score=42.89  Aligned_cols=68  Identities=16%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-HHH----------cCceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES----------IGVKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~----------~g~~~~~~~~~~~~~aDvI~   76 (276)
                      .+..||.|+|.|.+|.+.+..++.+|.  ..++.+. |.++++++- ..+          ..+....| -.+.++++++|
T Consensus        18 ~~~~KItVVG~G~VGmAca~siL~k~L--adel~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~lvI   93 (332)
T KOG1495|consen   18 FKHNKITVVGVGQVGMACAISILLKGL--ADELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSKLVI   93 (332)
T ss_pred             ccCceEEEEccchHHHHHHHHHHHhhh--hhceEEE-ecCcchhhhhhhhhccccccccCCceEecCc-ccccCCCcEEE
Confidence            446899999999999999999998886  3478888 988887642 111          12222223 34567899999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      +..
T Consensus        94 iTA   96 (332)
T KOG1495|consen   94 ITA   96 (332)
T ss_pred             Eec
Confidence            987

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.17  Score=42.09  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.+++.|.|+ |.+|..++..|.+.|+    +|++. +|++++.+.+.+
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~   51 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA----RVVAA-ARNAAALDRLAG   51 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            34578999997 8999999999999998    99999 999888776655

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.04  E-value=0.16  Score=42.28  Aligned_cols=42  Identities=19%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +..++|.|.| .|.+|.++++.|++.|+    +|++. +|++++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~   46 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT   46 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence            3457899998 59999999999999998    99999 8987655433

>PRK07775 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.22  Score=42.52  Aligned_cols=49  Identities=14%  Similarity=0.198  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      |.-+++..+++.+-|.|+ |.+|..+++.|.+.|+    +|++. .|++++.+.+
T Consensus         1 ~~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~   50 (274)
T PRK07775          1 MPRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL   50 (274)
T ss_pred             CCCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence            455566667778888885 9999999999999998    89888 8887765544

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.03  E-value=0.28  Score=45.07  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeC----------CCHHHHHHHHH-c-----------CceeccCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSDN   65 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~~   65 (276)
                      .+.+||+|.|.|++|+..|+.|.+.|.    +|+.+.|          .+.+.+...++ .           +.... ++
T Consensus       230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~  304 (445)
T PRK09414        230 FEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EG  304 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CC
Confidence            356899999999999999999999998    7764426          45555444433 1           22211 23


Q ss_pred             hhhh-cCCCEEEEeeCcccH-HHHHHHH
Q 023866           66 NAVV-EYSDVVVFSVKPQVD-KAAVITE   91 (276)
Q Consensus        66 ~~~~-~~aDvI~lav~~~~~-~~vl~~~   91 (276)
                      .++. .+|||++-|.....+ .+....+
T Consensus       305 ~~i~~~d~DVliPaAl~n~It~~~a~~i  332 (445)
T PRK09414        305 GSPWSVPCDIALPCATQNELDEEDAKTL  332 (445)
T ss_pred             ccccccCCcEEEecCCcCcCCHHHHHHH
Confidence            3333 379999999865543 3444444

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.02  E-value=0.22  Score=38.21  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             CeEEEEeCCCHHHHHHHHH----cCcee--cc----CchhhhcCCCEEEEeeCc
Q 023866           38 DRICTAVHSNLKRRDAFES----IGVKV--LS----DNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        38 ~~V~v~~~r~~~~~~~l~~----~g~~~--~~----~~~~~~~~aDvI~lav~~   81 (276)
                      .+|.+| +|+....+.+..    .|+++  +.    +.++.+++||+|+.++..
T Consensus        29 k~v~Vv-Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~   81 (140)
T cd05212          29 KKVLVV-GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPK   81 (140)
T ss_pred             CEEEEE-CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCC
Confidence            456666 666655444332    34332  22    556788999999999953

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.02  E-value=0.19  Score=40.64  Aligned_cols=77  Identities=12%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCC-CCCCeEEEEeCCCHHHHHHHHHcCceeccCc-hhh-----hcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGV-LPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAV-----VEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~-~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~-----~~~aDvI~lav~~   81 (276)
                      .+.|++|||.|++|.-+.-.++++|- +.+.-...+ |...+-+.+..+.|+..+..- .-+     ..+-|+||-++..
T Consensus         3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgi-dp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa   81 (310)
T COG4569           3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGI-DPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA   81 (310)
T ss_pred             CcceEEEEccCcccHHHHHHHHhcCCcccceeEEcc-CCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence            46799999999999999888888853 332222333 555555666666776543221 111     2456799999976


Q ss_pred             ccHHH
Q 023866           82 QVDKA   86 (276)
Q Consensus        82 ~~~~~   86 (276)
                      .....
T Consensus        82 ~~h~~   86 (310)
T COG4569          82 GAHVK   86 (310)
T ss_pred             chhhc
Confidence            65443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.01  E-value=0.18  Score=46.64  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceec-----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVL-----   62 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~-----   62 (276)
                      ..++|+|||+|.-|.+-+.-|.++||    +|+++ ++.+.                     +++.|.+.|+.+.     
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~----~Vtv~-e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v  196 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH----DVTVF-ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV  196 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC----eEEEe-CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence            45899999999999999999999999    99998 76432                     1334445565431     


Q ss_pred             ---cCchhhhcCCCEEEEee
Q 023866           63 ---SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        63 ---~~~~~~~~~aDvI~lav   79 (276)
                         -+.+++.++.|.||+++
T Consensus       197 G~~it~~~L~~e~Dav~l~~  216 (457)
T COG0493         197 GRDITLEELLKEYDAVFLAT  216 (457)
T ss_pred             CCcCCHHHHHHhhCEEEEec
Confidence               24567778889999998

>PRK08013 oxidoreductase; Provisional

Probab=94.01  E-value=0.075  Score=48.21  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+...|.|||+|..|.++|..|.+.|+    +|.++ ++.++
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~----~v~vi-E~~~~   37 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGL----RVAVL-EQRVP   37 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCC----EEEEE-eCCCC
Confidence            345689999999999999999999999    99999 87654

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.00  E-value=0.19  Score=39.54  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=39.5

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+.+++.+||-+ .+|.+++.-|.+.|.    .|+++ +...              .+.++.+++||+||.++.
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeec
Confidence            456899999987 599999999999887    88888 6542              244566889999999985

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.98  E-value=0.1  Score=43.64  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...+|.|+|+|.+|+.++.+|.+.|.   .+++++ |.+
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D   44 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD   44 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence            45789999999999999999999997   477777 544

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.95  E-value=0.19  Score=41.81  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=35.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +++++.|.|+ |.+|..+++.|++.|+    +|++. +|++++.+.+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~   47 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALA   47 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence            4567888875 9999999999999998    99999 99987765543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.95  E-value=0.15  Score=44.30  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..+|+|||.-.=-..+++.|.+.|+    +|.++ .-+.+   .....|+.+..+..++++++|+|++.+|+
T Consensus         2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~-g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~   65 (296)
T PRK08306          2 GKHIAVIGGDARQLELIRKLVELGA----KVSLV-GFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPG   65 (296)
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-ecccc---ccccCCceeeccHHHHhccCCEEEECCcc
Confidence            4689999999999999999999999    99987 44321   11235888877778889999999999876

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.94  E-value=0.085  Score=47.51  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC---CCCCCCeEEEEeCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS---GVLPPDRICTAVHSN   47 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~---g~~~~~~V~v~~~r~   47 (276)
                      |.+.+|.|||+|..|.++|..|.+.   |+    +|.++ +|.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~----~v~v~-E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGL----PVALI-EAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCC----EEEEE-eCC
Confidence            4667899999999999999999988   99    99999 884

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.91  E-value=0.088  Score=47.46  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |+..+|.|||+|.-|.++|..|.+.|+    +|+++ ++.+
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~----~v~l~-E~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGR----SVAVI-EGGE   36 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCC----cEEEE-cCCC
Confidence            344689999999999999999999999    99999 8653

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=93.88  E-value=0.088  Score=47.85  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+|.|||.|.+|.+.|..|.+.|+    +|.++ ++...
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~----~V~vl-e~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGH----EVTVI-DRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCCc
Confidence            589999999999999999999998    99999 88743

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.87  E-value=0.39  Score=42.47  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC-----chhhh---cCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVV---EYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~---~~aDvI~lav~~   81 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+     ..+..   ...|+||-++-.
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~  245 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH  245 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence            4689999999999988887777775   257788 99999999888888643211     11111   126777777753


Q ss_pred             -ccHHHHHHH
Q 023866           82 -QVDKAAVIT   90 (276)
Q Consensus        82 -~~~~~vl~~   90 (276)
                       ..+...+.-
T Consensus       246 ~~~~~~~~~~  255 (343)
T PRK09880        246 PSSINTCLEV  255 (343)
T ss_pred             HHHHHHHHHH
Confidence             234444433

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.87  E-value=0.22  Score=42.89  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+.+++.|||-| ..|.+++..|.+.|.    .|+++ +....              +..+.+++||+||.|+.
T Consensus       155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG  209 (285)
T PRK14191        155 IKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVG  209 (285)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecC
Confidence            356899999999 999999999998887    89988 54322              12456889999999994

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.84  E-value=0.17  Score=42.51  Aligned_cols=41  Identities=17%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+|-|+|+ |.+|..+++.|.+.|+    +|.+. +|++++.+.+.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~   42 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELKD   42 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            57889985 9999999999999998    99999 999988776654

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.78  E-value=0.12  Score=46.02  Aligned_cols=82  Identities=9%  Similarity=0.024  Sum_probs=49.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHcCceecc-CchhhhcCCCEEEEeeCcccHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ++|||+|+ |.+|+.|.+.|.+...++..++.+..++ +..+.-.+......+.. ++.+...+.|++|+|.+.+..+++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~   80 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI   80 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence            48999999 9999999998884433354556555122 11111111111222221 122346789999999988877777


Q ss_pred             HHHHh
Q 023866           88 VITEE   92 (276)
Q Consensus        88 l~~~~   92 (276)
                      .....
T Consensus        81 ~p~~~   85 (366)
T TIGR01745        81 YPKLR   85 (366)
T ss_pred             HHHHH
Confidence            76663

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.77  E-value=0.19  Score=42.00  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +.+++.|+|+ |.+|..+++.|++.|+    +|++. +|++++.+.+.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~   46 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVA   46 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence            4578999986 9999999999999999    99999 99988766554

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.76  E-value=0.2  Score=42.20  Aligned_cols=44  Identities=11%  Similarity=0.150  Sum_probs=37.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.++|-|+|+ |.+|.++++.|.+.|+    +|++. +|++.+.+.+.+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~   49 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAAD   49 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHH
Confidence            56678999988 9999999999999998    99999 998877665543

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=93.70  E-value=0.2  Score=44.20  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      .+++-|.|.|..|..+|..+...|-    +|.|+ ..+|-++-++.=.|..+. ...+++..+|++|.++-..+
T Consensus       209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd  276 (420)
T COG0499         209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD  276 (420)
T ss_pred             CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence            4678888999999999999999998    99999 888876554444687765 46788899999999996554

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.68  E-value=0.22  Score=41.80  Aligned_cols=43  Identities=23%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ++.++|-|.| .|.+|..+++.|++.|+    +|.+. +|++++.+.+.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~   45 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA   45 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence            3457899998 59999999999999998    99999 99988766543

>PLN02214 cinnamoyl-CoA reductase

Probab=93.64  E-value=0.22  Score=44.15  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-----HHHHc--Ccee-cc------CchhhhcCCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----AFESI--GVKV-LS------DNNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----~l~~~--g~~~-~~------~~~~~~~~aD   73 (276)
                      .+++|.|.|+ |-+|+.++..|+++|+    +|++. .|+.++..     .+...  .+.. ..      +..++++.+|
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   83 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY----TVKGT-VRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCD   83 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCC
Confidence            4578999987 9999999999999999    99988 78765421     11111  1221 11      2234567889


Q ss_pred             EEEEeeC
Q 023866           74 VVVFSVK   80 (276)
Q Consensus        74 vI~lav~   80 (276)
                      +||-+..
T Consensus        84 ~Vih~A~   90 (342)
T PLN02214         84 GVFHTAS   90 (342)
T ss_pred             EEEEecC
Confidence            9988763

>PRK07538 hypothetical protein; Provisional

Probab=93.62  E-value=0.086  Score=48.00  Aligned_cols=34  Identities=12%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+|.|||+|.-|.++|..|.++|+    +|+++ +|.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGI----EVVVF-EAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC----cEEEE-EcCCc
Confidence            689999999999999999999999    99999 88753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.58  E-value=0.12  Score=46.74  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +....|.|||+|..|.++|..|.++|+    +|.++ ++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~----~v~li-E~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGL----SVALV-EGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC----EEEEE-eCCC
Confidence            455689999999999999999999999    89998 8753

>PRK07102 short chain dehydrogenase; Provisional

Probab=93.58  E-value=0.21  Score=41.68  Aligned_cols=41  Identities=24%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |++|-|.|+ |.+|..+++.|++.|+    +|++. +|++++.+.+.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~   42 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA----RLYLA-ARDVERLERLA   42 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC----EEEEE-eCCHHHHHHHH
Confidence            467888874 9999999999999998    99999 99988765543

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=93.56  E-value=0.25  Score=42.13  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ++.+++-|.|+ |.+|.+++..|.+.|+    +|.++ +|++++.+.+.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~   51 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA----KVAIL-DRNQEKAEAVV   51 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence            45567888876 8999999999999998    99999 99887765543

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=93.55  E-value=0.21  Score=42.37  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVH   45 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~   45 (276)
                      .+.+||.|-|.|++|+..++.|.+.|.    +|+ ++ |
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga----kvvaVs-D   69 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGA----KVVTLS-D   69 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-C
Confidence            356899999999999999999999998    777 55 5

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.52  E-value=0.2  Score=42.20  Aligned_cols=41  Identities=20%  Similarity=0.105  Sum_probs=35.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +++-|+|+ |.+|..+++.|.+.|+    +|.+. +|++++.+.+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~   43 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA   43 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence            56888875 9999999999999998    99999 999988777654

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.52  E-value=0.49  Score=43.41  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEE-EeC----------CCHHHHHH---HHH------------cCcee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT-AVH----------SNLKRRDA---FES------------IGVKV   61 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v-~~~----------r~~~~~~~---l~~------------~g~~~   61 (276)
                      .+.+||.|.|.|++|...++.|.+.|.    +|++ + |          .+.+++..   ++.            .++..
T Consensus       226 l~g~rVaVQGfGNVG~~aA~~L~e~GA----kVVaVS-D~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~  300 (444)
T PRK14031        226 LKGKVCLVSGSGNVAQYTAEKVLELGG----KVVTMS-DSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY  300 (444)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence            356899999999999999999999998    8875 5 6          45544431   111            13332


Q ss_pred             ccCchhh-hcCCCEEEEeeCccc-HHHHHHHH
Q 023866           62 LSDNNAV-VEYSDVVVFSVKPQV-DKAAVITE   91 (276)
Q Consensus        62 ~~~~~~~-~~~aDvI~lav~~~~-~~~vl~~~   91 (276)
                      . ++++. -.+||++|-|.-... -.+....+
T Consensus       301 i-~~d~~~~~~cDIliPaAl~n~I~~~na~~l  331 (444)
T PRK14031        301 V-EGARPWGEKGDIALPSATQNELNGDDARQL  331 (444)
T ss_pred             c-CCcccccCCCcEEeecccccccCHHHHHHH
Confidence            2 23333 257999999875443 34555555

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.52  E-value=0.23  Score=41.38  Aligned_cols=43  Identities=12%  Similarity=0.123  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ++.+++-|+|+ |.+|..+++.|.+.|+    +|.+. +|++++.+.+.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~   48 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELA   48 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence            34578999986 9999999999999998    99998 99988766543

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.52  E-value=0.12  Score=34.32  Aligned_cols=29  Identities=34%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |||+|.-|.+.|..|.++|+    +|+++ +++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~----~v~v~-E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY----RVTVF-EKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC----cEEEE-ecCc
Confidence            79999999999999999998    99999 8764

...

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=93.46  E-value=0.36  Score=42.54  Aligned_cols=80  Identities=11%  Similarity=0.065  Sum_probs=45.5

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-----------------------ceec--cCc
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN   65 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~   65 (276)
                      ||||+|+|++|..+.+.|.+.+.-+.-+|...++... +....+.+++                       +.+.  .++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p   80 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP   80 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence            6999999999999999988653000016665534333 2233333211                       1111  123


Q ss_pred             hhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           66 NAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        66 ~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .+.-   .+.|+||.|+.+....+.....
T Consensus        81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~  109 (325)
T TIGR01532        81 EALPWRALGVDLVLDCTGVYGNREQGERH  109 (325)
T ss_pred             hhccccccCCCEEEEccchhccHHHHHHH
Confidence            3322   3789999999877655554433

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.40  E-value=0.25  Score=42.84  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=36.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.++|-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~   82 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVAD   82 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            3467888876 9999999999999998    99999 999887766543

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.40  E-value=0.099  Score=48.09  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +..++++|||+|.-|.+-|+.|++.|+    +++++ .|+
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~----~v~vf-Er~   38 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGH----EVVVF-ERT   38 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCC----CceEE-Eec
Confidence            456899999999999999999999998    66665 443

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.34  E-value=0.59  Score=41.11  Aligned_cols=68  Identities=12%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHHcCceec-cC-c---h---hhhc--CCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVL-SD-N---N---AVVE--YSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~-~~-~---~---~~~~--~aDvI~la   78 (276)
                      ..+|.|+|+|.+|...++.+...|.    + |++. ++++++.+.+++.|+... +. .   .   +...  ..|+||-+
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~----~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~  238 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGA----EDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC  238 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence            4689999999999999888877887    6 8888 999999988887776421 11 1   0   1111  46777777


Q ss_pred             eCcc
Q 023866           79 VKPQ   82 (276)
Q Consensus        79 v~~~   82 (276)
                      +...
T Consensus       239 ~g~~  242 (339)
T cd08239         239 SGNT  242 (339)
T ss_pred             CCCH
Confidence            7544

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07877 hypothetical protein; Provisional

Probab=93.34  E-value=0.4  Score=46.81  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH------------------HHHHHHHH------cCcee--c-
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL------------------KRRDAFES------IGVKV--L-   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------------------~~~~~l~~------~g~~~--~-   62 (276)
                      ..||+|||+| +|+..+..|..+|.+  .+++++ |.+.                  .|++.+++      ..+++  . 
T Consensus       107 ~~~V~IvG~G-lGs~~a~~LaraGvv--G~l~lv-D~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        107 RLRIGVVGLS-VGHAIAHTLAAEGLC--GELRLA-DFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             cCCEEEEEec-HHHHHHHHHHHccCC--CeEEEE-cCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5789999999 899999999999831  255655 4321                  12222222      12222  1 


Q ss_pred             -----cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 -----SDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 -----~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                           .+..++++++|+||-|+..-..+-++.+
T Consensus       183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~  215 (722)
T PRK07877        183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLRE  215 (722)
T ss_pred             ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence                 1344567899999999987666655543

>PRK07588 hypothetical protein; Provisional

Probab=93.34  E-value=0.11  Score=46.98  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ++|.|||.|..|.++|..|.+.|+    +|+++ ++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~----~v~v~-E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH----EPTLI-ERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC----ceEEE-eCCCC
Confidence            589999999999999999999999    89998 87643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.32  E-value=0.36  Score=48.77  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ...+||.|||.|.-|.+.|..|.+.|+    +|+++ ++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~----~VtV~-Ek~  571 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH----PVTVF-ERE  571 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecc
Confidence            456899999999999999999999999    99998 764

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.3  Score=41.33  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.+++-|.|. |.+|.++++.|++.|+    +|.+. +|++++.+.+.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~   52 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAE   52 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            45678888876 6899999999999998    99999 999887665543

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.29  Score=41.07  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.++|-|.|+ |.+|..+++.|.+.|+    +|++. +|++++.+.+..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~   51 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELRA   51 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            35578999986 9999999999999998    99999 999888766543

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=93.27  E-value=0.3  Score=44.64  Aligned_cols=65  Identities=20%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceeccC-chhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSD-NNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~-~~~~~~~aDvI~lav   79 (276)
                      ..+|-|||.|..|. ++|.-|++.||    +|..+ |.... ..++|++.|+.+... ..+-+.+.|+||.+.
T Consensus         7 ~~~iHfIGIgG~GMsglA~iL~~~G~----~VsGS-D~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~   74 (459)
T COG0773           7 LPKIHFIGIGGIGMSGLAEILLNLGY----KVSGS-DLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN   74 (459)
T ss_pred             CceEEEEeeccccHHHHHHHHHhCCC----ceECc-cccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence            34799999988774 58888999999    99999 76543 467788899886532 233367788888765

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=93.25  E-value=0.11  Score=45.68  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      .+|.|||+|.-|.++|..|.++|+    +|.++ +|++.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~----~v~i~-E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI----DVTII-ERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC----EEEEE-ESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc----ccccc-hhccc
Confidence            379999999999999999999999    99999 87654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02527 aspartate carbamoyltransferase

Probab=93.25  E-value=0.56  Score=41.03  Aligned_cols=65  Identities=26%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             CCCeEEEEccc---HHHHHHHHHHHhC-CCCCCCeEEEEeCC-----CHHHHHHHHHcCc--eeccCchhhhcCCCEEEE
Q 023866            9 ESFILGFIGAG---KMAESIAKGVAKS-GVLPPDRICTAVHS-----NLKRRDAFESIGV--KVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G---~mG~~la~~l~~~-g~~~~~~V~v~~~r-----~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~l   77 (276)
                      +..||+|||-+   ++..+++..+.+. |.    +|+++ ..     .++-.+.+++.|.  .+++++.++++++|+|..
T Consensus       150 ~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt  224 (306)
T PLN02527        150 DGIKVGLVGDLANGRTVRSLAYLLAKYEDV----KIYFV-APDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQ  224 (306)
T ss_pred             CCCEEEEECCCCCChhHHHHHHHHHhcCCC----EEEEE-CCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEE
Confidence            56899999976   6899999988765 77    88877 43     2233344444454  457888999999999998


Q ss_pred             e
Q 023866           78 S   78 (276)
Q Consensus        78 a   78 (276)
                      -
T Consensus       225 ~  225 (306)
T PLN02527        225 T  225 (306)
T ss_pred             C
Confidence            3

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.23  E-value=0.25  Score=41.62  Aligned_cols=44  Identities=16%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.+++.|+|+ |.+|..+++.|++.|+    +|++. +|+++..+.+.+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~   53 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAA   53 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            35678999976 9999999999999999    99998 998877766544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.22  E-value=0.13  Score=46.36  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +...|.|||+|..|.++|..|.++|+    +|.++ ++++
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~----~v~li-E~~~   40 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGA----SVALV-APEP   40 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCC----eEEEE-eCCC
Confidence            34579999999999999999999998    99999 8764

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=93.21  E-value=0.26  Score=41.66  Aligned_cols=43  Identities=12%  Similarity=0.238  Sum_probs=36.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|.|+ |.+|.++++.|.+.|+    +|.+. +|+.++++.+.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~   47 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA   47 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence            4567778876 8999999999999999    99999 999888777655

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK09242 tropinone reductase; Provisional

Probab=93.20  E-value=0.31  Score=41.03  Aligned_cols=46  Identities=11%  Similarity=0.037  Sum_probs=37.7

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +..++.+++-|.|+ |.+|..++..|.+.|+    +|++. +|++++.+.+.
T Consensus         4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~   50 (257)
T PRK09242          4 RWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQAR   50 (257)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence            34456678888876 8999999999999998    99999 89988766554

>PLN03075 nicotianamine synthase; Provisional

Probab=93.20  E-value=0.68  Score=40.15  Aligned_cols=80  Identities=14%  Similarity=0.107  Sum_probs=48.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC----ceec-cCchhh---hcCCCEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKVL-SDNNAV---VEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g----~~~~-~~~~~~---~~~aDvI   75 (276)
                      ...+|.+||+|..|..-.-.+  +++.+...++.+ |++++..+..++     .|    ++.. .|..+.   ..+.|+|
T Consensus       123 ~p~~VldIGcGpgpltaiila--a~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV  199 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLA--KHHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV  199 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHH--HhcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence            457899999998876443222  122244478888 999987765543     22    3221 222222   3689999


Q ss_pred             EEeeC----cccHHHHHHHH
Q 023866           76 VFSVK----PQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~----~~~~~~vl~~~   91 (276)
                      |+.+-    ...-..++..+
T Consensus       200 F~~ALi~~dk~~k~~vL~~l  219 (296)
T PLN03075        200 FLAALVGMDKEEKVKVIEHL  219 (296)
T ss_pred             EEecccccccccHHHHHHHH
Confidence            99872    23445666666

>PRK08223 hypothetical protein; Validated

Probab=93.20  E-value=0.15  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..+|.|||+|.+|+.++..|..+|.   .+++++ |.+
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D   60 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD   60 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence            5789999999999999999999997   466666 543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.19  E-value=0.27  Score=43.19  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=44.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHH-c---Ccee-c---cC---chhhhcCCCE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-I---GVKV-L---SD---NNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~-~---g~~~-~---~~---~~~~~~~aDv   74 (276)
                      +.++|.|.|+ |.+|+.+++.|++.|  +    +|++. +|+..+.+.+.+ .   ++.. .   .+   ..++++++|+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~   77 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPK----KIIIY-SRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDY   77 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCc----EEEEE-cCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCE
Confidence            4578999976 999999999999876  5    88888 888765544332 1   2221 1   11   2344567899


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||-+.
T Consensus        78 Vih~A   82 (324)
T TIGR03589        78 VVHAA   82 (324)
T ss_pred             EEECc
Confidence            98754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.19  E-value=0.45  Score=42.14  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~   80 (276)
                      ..++.|+|+|.+|...+..+.+ .|-   .+|+++ ++++++++.+++.+.....  .+..+  ..|+||=++-
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G  231 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPE---SKLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVG  231 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCC---CcEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCC
Confidence            4689999999999977776554 332   278888 9999998887665543211  11112  3688887775

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK08309 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.29  Score=39.18  Aligned_cols=41  Identities=10%  Similarity=0.141  Sum_probs=34.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |++.|+|...||..++..|.+.|+    +|.+. +|++++.+.+..
T Consensus         1 m~vlVtGGtG~gg~la~~L~~~G~----~V~v~-~R~~~~~~~l~~   41 (177)
T PRK08309          1 MHALVIGGTGMLKRVSLWLCEKGF----HVSVI-ARREVKLENVKR   41 (177)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCcC----EEEEE-ECCHHHHHHHHH
Confidence            578899887788899999999999    99998 899887766543

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.29  Score=40.86  Aligned_cols=41  Identities=20%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +.+++-|.|+ |.+|..+++.|.+.|+    +|++. +|+++..+.+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~----~vi~~-~r~~~~~~~~   46 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA----SVVVA-DINAEGAERV   46 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence            4578889987 9999999999999998    99999 9987765444

>PLN00016 RNA-binding protein; Provisional

Probab=93.11  E-value=0.16  Score=45.70  Aligned_cols=78  Identities=19%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             CCCeEEEE----cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcCcee-ccCch---hh
Q 023866            9 ESFILGFI----GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIGVKV-LSDNN---AV   68 (276)
Q Consensus         9 ~~~kIgiI----G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g~~~-~~~~~---~~   68 (276)
                      .++||.|+    |+ |.+|+.+++.|++.||    +|++. +|+++..+.           +...|+.. ..|..   ++
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~----~V~~l-~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~  125 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH----EVTLF-TRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSK  125 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC----EEEEE-ecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhh
Confidence            35789999    65 9999999999999999    99999 887654322           22234442 22332   23


Q ss_pred             h--cCCCEEEEeeCcc--cHHHHHHHH
Q 023866           69 V--EYSDVVVFSVKPQ--VDKAAVITE   91 (276)
Q Consensus        69 ~--~~aDvI~lav~~~--~~~~vl~~~   91 (276)
                      +  ..+|+||-+....  ....+++..
T Consensus       126 ~~~~~~d~Vi~~~~~~~~~~~~ll~aa  152 (378)
T PLN00016        126 VAGAGFDVVYDNNGKDLDEVEPVADWA  152 (378)
T ss_pred             hccCCccEEEeCCCCCHHHHHHHHHHH
Confidence            3  3689998875322  244555444

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=93.09  E-value=0.27  Score=42.38  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             eEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc--cHHHHH
Q 023866           12 ILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--VDKAAV   88 (276)
Q Consensus        12 kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~--~~~~vl   88 (276)
                      |+++| |.|..|..-+++|...|-    +|++. ..+|=.+-+..-.|..++ ..+|++++.|+++.++--.  ...+-+
T Consensus       215 Kv~Vv~GYGdVGKgCaqaLkg~g~----~VivT-EiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~dii~~~H~  288 (434)
T KOG1370|consen  215 KVAVVCGYGDVGKGCAQALKGFGA----RVIVT-EIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKDIITGEHF  288 (434)
T ss_pred             cEEEEeccCccchhHHHHHhhcCc----EEEEe-ccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcchhhHHHH
Confidence            55555 999999999999998887    89998 888765444434687765 5778999999999998433  345556


Q ss_pred             HHH
Q 023866           89 ITE   91 (276)
Q Consensus        89 ~~~   91 (276)
                      .++
T Consensus       289 ~~m  291 (434)
T KOG1370|consen  289 DQM  291 (434)
T ss_pred             HhC
Confidence            655

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.08  E-value=0.28  Score=41.22  Aligned_cols=42  Identities=21%  Similarity=0.257  Sum_probs=35.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +.+++-|.|+ |.+|..++..|++.|+    +|.+. +|++++.+.+.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~   48 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVA   48 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHH
Confidence            4567888887 9999999999999998    99988 99987665443

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.07  E-value=0.27  Score=43.00  Aligned_cols=65  Identities=22%  Similarity=0.265  Sum_probs=43.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH---H-cC----cee-----c--cCchhhhcCCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---S-IG----VKV-----L--SDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~-~g----~~~-----~--~~~~~~~~~aD   73 (276)
                      .++|-|.|+ |-+|+.++..|++.|+    +|++. .|++++.+...   . .+    +..     .  .+..++++.+|
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d   79 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY----TINAT-VRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCE   79 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-EcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCC
Confidence            478889985 9999999999999999    99887 77765433221   1 11    211     1  11234566789


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||-+.
T Consensus        80 ~vih~A   85 (325)
T PLN02989         80 TVFHTA   85 (325)
T ss_pred             EEEEeC
Confidence            888876

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=93.07  E-value=0.55  Score=42.89  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             CCCCeEEEEccc---HHHHHHHHHHHhC-CCCCCCeEEEEeCCC-----HHHHHHHHHcC--ceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIGAG---KMAESIAKGVAKS-GVLPPDRICTAVHSN-----LKRRDAFESIG--VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~G---~mG~~la~~l~~~-g~~~~~~V~v~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~   76 (276)
                      .+..||+|+|-+   ++..+++..+... |.    +|+++ ...     ++-.+.+.+.|  +.+++++.++++++|+|.
T Consensus       239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~----~v~l~-~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVY  313 (429)
T PRK11891        239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGL----KFTLV-SPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVY  313 (429)
T ss_pred             cCCCEEEEECcCCCChHHHHHHHHHHHhcCC----EEEEE-CCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEE
Confidence            356899999994   9999999987765 87    88887 432     22234444445  456788899999999999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      ...
T Consensus       314 t~~  316 (429)
T PRK11891        314 ATR  316 (429)
T ss_pred             EcC
Confidence            843

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.07  E-value=0.3  Score=41.53  Aligned_cols=43  Identities=12%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.++|-|.|+ |.+|..+++.|.+.|+    +|.+. +|++++.+.+.+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~   47 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETAA   47 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            4568888887 9999999999999998    99999 999988776543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.06  E-value=0.62  Score=41.03  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-hhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDvI~lav~   80 (276)
                      ..+|.|.|+|.+|...++.....|.    +|++. ++++++.+.+++.|+...-+. ....+..|+++.++.
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~  232 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAP  232 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCC
Confidence            4589999999999988877777776    78888 999999998888887532221 111234677776653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.00  E-value=0.85  Score=38.15  Aligned_cols=78  Identities=15%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-cc--C--chhh-----hcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS--D--NNAV-----VEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~--~--~~~~-----~~~aDvI~la   78 (276)
                      ...+|.|.|+|.+|.+++..+...|.    +|++. ++++++.+.+++.|... ..  +  ..+.     -...|++|-+
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~----~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  208 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGA----RVIVT-DRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA  208 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-cCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence            34689999999999999988888887    89988 99988888877665431 11  1  1111     1357888877


Q ss_pred             eCc-ccHHHHHHHH
Q 023866           79 VKP-QVDKAAVITE   91 (276)
Q Consensus        79 v~~-~~~~~vl~~~   91 (276)
                      +.. ......+..+
T Consensus       209 ~~~~~~~~~~~~~l  222 (271)
T cd05188         209 VGGPETLAQALRLL  222 (271)
T ss_pred             CCCHHHHHHHHHhc
Confidence            765 3444444433

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07045 putative monooxygenase; Reviewed

Probab=92.98  E-value=0.13  Score=46.37  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      +..+|.|||+|.-|.+.|..|.++|+    +|.++ ++.++
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~----~v~v~-E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGH----SVTVV-ERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCC----cEEEE-eCCCc
Confidence            45789999999999999999999999    99999 87664

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=92.97  E-value=0.13  Score=46.90  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~   49 (276)
                      +||.|||+|.-|.++|..|.++| +    +|+|+ +|+++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~----~v~v~-Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHL----NVQLF-EAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCC----CEEEE-ecCCc
Confidence            68999999999999999999887 5    89999 88754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2izz_A	322	Crystal Structure Of Human Pyrroline-5-Carboxylate		4e-50
2ger_A	321	Crystal Structure And Oxidative Mechanism Of Human		9e-50
2gr9_A	277	Crystal Structure Of P5cr Complexed With Nadh Lengt		1e-49
2rcy_A	262	Crystal Structure Of Plasmodium Falciparum Pyrrolin		2e-29
3tri_A	280	Structure Of A Pyrroline-5-Carboxylate Reductase (P		3e-28
2amf_A	259	Crystal Structure Of 1-Pyrroline-5-Carboxylate Redu		6e-27
3gt0_A	247	Crystal Structure Of Pyrroline 5-Carboxylate Reduct		1e-26
2ahr_A	259	Crystal Structures Of 1-Pyrroline-5-Carboxylate Red		5e-25
1yqg_A	263	Crystal Structure Of A Pyrroline-5-Carboxylate Redu		8e-17

>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate Reductase Length = 322

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/273 (42%), Positives = 156/273 (57%), Gaps = 9/273 (3%)
Query: 9   ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
           +S  +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N  
Sbjct: 21  QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 80
Query: 68  XXXXXXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHS 122
                       KP +     D+     E+      C + +   S  ++ S +       
Sbjct: 81  TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---P 137
Query: 123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 182
           R IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSG
Sbjct: 138 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSG 197
Query: 183 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 242
           SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPG
Sbjct: 198 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPG 257
Query: 243 GTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
           G TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct: 258 GATIHALHVLESGGFRSLLINAVEASCIRTREL 290

>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human Pyrroline-5- Carboxylate Reductase Length = 321

Iteration: 1
 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 154/269 (57%), Gaps = 9/269 (3%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
           +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N      
Sbjct: 5   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72  XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                   KP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct: 65  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 121
Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 122 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 181
Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct: 182 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 241
Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
             +H LE  GFR +L+NAV A+  R+REL
Sbjct: 242 HALHVLESGGFRSLLINAVEASCIRTREL 270

>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh Length = 277

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 154/270 (57%), Gaps = 9/270 (3%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
           +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GVK+   N      
Sbjct: 5   VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72  XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
                   KP +     D+     E+      C + +   S  ++ S +       R IR
Sbjct: 65  SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 121
Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
            M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPA
Sbjct: 122 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 181
Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
           Y F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI
Sbjct: 182 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 241
Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSRELS 276
             +H LE  GFR +L+NAV A+  R+REL 
Sbjct: 242 HALHVLESGGFRSLLINAVEASCIRTRELQ 271

>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13p1.284) With Nadp Bound Length = 262

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 88/152 (57%)
Query: 122 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS 181
           ++ + V PNTP  VGE + +          D + +  +F S G I    EK  D  T +S
Sbjct: 107 NKIVWVXPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDXDIATAIS 166
Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
           G GPAY++L IE+L D GV  GL REL+  L  QT+ G+   V KS +   QLKD++ SP
Sbjct: 167 GCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEXVKKSDQPVQQLKDNIVSP 226
Query: 242 GGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 273
           GG T  G++ LEK+ F+  + NAV AA ++S+
Sbjct: 227 GGITAVGLYSLEKNSFKYTVXNAVEAACEKSK 258

>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc) From Coxiella Burnetii Length = 280

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 125/268 (46%), Gaps = 8/268 (2%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXX 71
           + FIG G  A +I  G+  +G   P+RIC    S L + D F E  GV    DN      
Sbjct: 6   ITFIGGGNXARNIVVGLIANG-YDPNRICVTNRS-LDKLDFFKEKCGVHTTQDNRQGALN 63
Query: 72  XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE-WTGH-SRFIRVMP 129
                   KP   K   + EE          +     +   +  +E W G  SR +R  P
Sbjct: 64  ADVVVLAVKPHQIKX--VCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAXP 121
Query: 130 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGLSGSGPAYI 188
           NTPS+V   AT +    T  ++   L   +  +VG  IW + E   + I  LSGSGPAYI
Sbjct: 122 NTPSSVRAGATGLFANETVDKDQKNLAESIXRAVGLVIWVSSEDQIEKIAALSGSGPAYI 181
Query: 189 FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248
           FL  EAL +     GL +E A  L  QTVLGAA    ++ +   QL+  V SPGGTT   
Sbjct: 182 FLIXEALQEAAEQLGLTKETAELLTEQTVLGAARXALETEQSVVQLRQFVTSPGGTTEQA 241
Query: 249 IHELEKSGFRGILMNAVVAAAKRSRELS 276
           I  LE    R + + A+ AA  R++ELS
Sbjct: 242 IKVLESGNLRELFIKALTAAVNRAKELS 269

>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259

Iteration: 1
 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 13/265 (4%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
           +G IG GKMA +I KG+ ++   P + I +   S+L+R ++  E + +     +      
Sbjct: 6   IGIIGVGKMASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 72  XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSR-FIRVMPN 130
                   KPQ+ +  +   +   F      +     LQR + +V   G     +R+MPN
Sbjct: 61  VDLVILGIKPQLFETVL---KPLHFKQPIISMAAGISLQRLATFV---GQDLPLLRIMPN 114
Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 190
             + + +++T ++     ++E    +  L  S G  +   EK FD  T L+GS PAYI+L
Sbjct: 115 MNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYL 174
Query: 191 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250
            IEALA  GV  G+P+  AL + +QTVL +AS +  S + P    D + SPGGTTIAG+ 
Sbjct: 175 FIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLM 234
Query: 251 ELEKSGFRGILMNAVVAAAKRSREL 275
           ELE+ G    + +A+     +++ L
Sbjct: 235 ELERLGLTATVSSAIDKTIDKAKSL 259

>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Bcr38b Length = 247

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 120/244 (49%), Gaps = 1/244 (0%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
           +GFIG G    +   G     ++  ++I  +  +    ++A E  G+   +DNN      
Sbjct: 5   IGFIGCGNXGXAXIGGXINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73  XXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTP 132
                  KP +  A++I E           +   +G    S    +    + +RV PNTP
Sbjct: 65  DILILSIKPDL-YASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVXPNTP 123
Query: 133 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAI 192
           + VGE  + +      TE+D E +  +F S G+     EKL D +T +SGS PAY++  I
Sbjct: 124 ALVGEGXSALCPNEXVTEKDLEDVLNIFNSFGQTEIVSEKLXDVVTSVSGSSPAYVYXII 183
Query: 193 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 252
           EA AD  V  G PR  A   A+Q VLG+A  V ++G HPG+LKD V SPGGTTI  +  L
Sbjct: 184 EAXADAAVLDGXPRNQAYKFAAQAVLGSAKXVLETGIHPGELKDXVCSPGGTTIEAVATL 243
Query: 253 EKSG 256
           E+ G
Sbjct: 244 EEKG 247

>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
           +G IG GK A +I KG+ ++   P + I +   S+L+R ++  E + +     +      
Sbjct: 6   IGIIGVGKXASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAXSHQDLIDQ 60
Query: 72  XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSR-FIRVMPN 130
                   KPQ      + E        +  I   +      R   + G     +R+ PN
Sbjct: 61  VDLVILGIKPQ------LFETVLKPLHFKQPIISXAAGISLQRLATFVGQDLPLLRIXPN 114
Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 190
             + + +++T ++     ++E    +  L  S G  +   EK FD  T L+GS PAYI+L
Sbjct: 115 XNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYL 174
Query: 191 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250
            IEALA  GV  G+P+  AL + +QTVL +AS +  S + P    D + SPGGTTIAG+ 
Sbjct: 175 FIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLX 234
Query: 251 ELEKSGFRGILMNAVVAAAKRSREL 275
           ELE+ G    + +A+     +++ L
Sbjct: 235 ELERLGLTATVSSAIDKTIDKAKSL 259

>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase From Neisseria Meningitides Mc58 Length = 263

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 120 GHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAIT 178
           G  R +RV PNTP  +G   +        +E D  +  ++  SVG  +W  DE+    IT
Sbjct: 102 GTRRIVRVXPNTPGKIGLGVSGXYAEAEVSETDRRIADRIXKSVGLTVWLDDEEKXHGIT 161
Query: 179 GLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 238
           G+SGSGPAY+F  ++AL +  +  G     A  L+  T  GA ++  ++G+   +L+ +V
Sbjct: 162 GISGSGPAYVFYLLDALQNAAIRQGFDXAEARALSLATFKGAVALAEQTGEDFEKLQKNV 221
Query: 239 ASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRE 274
            S GGTT   +    +      +   V A  +RS+E
Sbjct: 222 TSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQE 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	1e-111
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	1e-109
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	1e-108
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	1e-107
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	1e-101
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	1e-100
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	3e-08
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	4e-07
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	6e-05

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322

 Score =  323 bits (831), Expect = e-111
 Identities = 120/289 (41%), Positives = 167/289 (57%), Gaps = 23/289 (7%)

Query: 1   MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGV 59
           +    +  +S  +GFIGAG++A ++AKG   +GVL   +I  ++   +L    A   +GV
Sbjct: 13  LGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV 72

Query: 60  KVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP------------S 107
           K+   N   V++SDV+  +VKP +    ++ E         ++IE              S
Sbjct: 73  KLTPHNKETVQHSDVLFLAVKPHI-IPFILDE-------IGADIEDRHIVVSCAAGVTIS 124

Query: 108 GLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 167
            +++      +    R IR M NTP  V E ATV + G  A  EDG L+ +L  SVG   
Sbjct: 125 SIEKKLS--AFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCT 182

Query: 168 RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 227
             +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S
Sbjct: 183 EVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHS 242

Query: 228 GKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
            +HPGQLKD+V+SPGG TI  +H LE  GFR +L+NAV A+  R+REL 
Sbjct: 243 EQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 291

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262

 Score =  315 bits (811), Expect = e-109
 Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 31/275 (11%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           LGF+G G+M  ++A G+A + ++  + +     S        ++  +  +S N  +  + 
Sbjct: 7   LGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK-------KNTTLNYMSSNEELARHC 59

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP-----------SGLQRWSRWVEWTGH 121
           D++V +VKP +   +V+          +  +                L+           
Sbjct: 60  DIIVCAVKPDI-AGSVLNN-------IKPYLSSKLLISICGGLNIGKLEEM-----VGSE 106

Query: 122 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS 181
           ++ + VMPNTP  VGE + +          D + +  +F S G I    EK  D  T +S
Sbjct: 107 NKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAIS 166

Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
           G GPAY++L IE+L D GV  GL REL+  L  QT+ G+  MV KS +   QLKD++ SP
Sbjct: 167 GCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSP 226

Query: 242 GGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           GG T  G++ LEK+ F+  +MNAV AA ++S+ + 
Sbjct: 227 GGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAMG 261

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280

 Score =  312 bits (802), Expect = e-108
 Identities = 98/275 (35%), Positives = 130/275 (47%), Gaps = 22/275 (8%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           + FIG G MA +I  G+  +G   P+RIC    S  K     E  GV    DN      +
Sbjct: 6   ITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL----------QRWSRWVEWTGHS 122
           DVVV +VKP      V  E        +  +     L              +W+     S
Sbjct: 65  DVVVLAVKPHQ-IKMVCEE-------LKDILSETKILVISLAVGVTTPLIEKWLG--KAS 114

Query: 123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLS 181
           R +R MPNTPS+V   AT +    T  ++   L   +  +VG  IW + E   + I  LS
Sbjct: 115 RIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALS 174

Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
           GSGPAYIFL +EAL +     GL +E A  L  QTVLGAA M  ++ +   QL+  V SP
Sbjct: 175 GSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSP 234

Query: 242 GGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           GGTT   I  LE    R + + A+ AA  R++ELS
Sbjct: 235 GGTTEQAIKVLESGNLRELFIKALTAAVNRAKELS 269

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score =  310 bits (797), Expect = e-107
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 25/271 (9%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +G IG GKMA +I KG+ ++    P  +  +  S  + ++  E + +     +  +++  
Sbjct: 6   IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL-------QRWSRWVEWTGHS-RF 124
           D+V+  +KPQ+ +  +              +                 R   + G     
Sbjct: 62  DLVILGIKPQLFETVL------------KPL-HFKQPIISMAAGISLQRLATFVGQDLPL 108

Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
           +R+MPN  + + +++T ++     ++E    +  L  S G  +   EK FD  T L+GS 
Sbjct: 109 LRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSS 168

Query: 185 PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT 244
           PAYI+L IEALA  GV  G+P+  AL + +QTVL +AS +  S + P    D + SPGGT
Sbjct: 169 PAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGT 228

Query: 245 TIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
           TIAG+ ELE+ G    + +A+     +++ L
Sbjct: 229 TIAGLMELERLGLTATVSSAIDKTIDKAKSL 259

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247

 Score =  293 bits (753), Expect = e-101
 Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 25/256 (9%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +GFIG G M  ++  G+    ++  ++I  +  +    ++A E  G+   +DNN V + +
Sbjct: 5   IGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP------------SGLQRWSRWVEWTG 120
           D+++ S+KP +  A++I E        +  I+                 +       +  
Sbjct: 65  DILILSIKPDL-YASIINE-------IKEIIKNDAIIVTIAAGKSIESTENA-----FNK 111

Query: 121 HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 180
             + +RVMPNTP+ VGE  + +      TE+D E +  +F S G+     EKL D +T +
Sbjct: 112 KVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMDVVTSV 171

Query: 181 SGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240
           SGS PAY+++ IEA+AD  V  G+PR  A   A+Q VLG+A MV ++G HPG+LKD V S
Sbjct: 172 SGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCS 231

Query: 241 PGGTTIAGIHELEKSG 256
           PGGTTI  +  LE+ G
Sbjct: 232 PGGTTIEAVATLEEKG 247

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263

 Score =  292 bits (749), Expect = e-100
 Identities = 80/275 (29%), Positives = 125/275 (45%), Gaps = 29/275 (10%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           + F+G G MA ++A G+ K G     RI  A     KR    + +GV+  S     +   
Sbjct: 3   VYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVET-SATLPELHSD 58

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL----------QRWSRWVEWTGHS 122
           DV++ +VKPQ  +AA               I     L             SR++   G  
Sbjct: 59  DVLILAVKPQDMEAAC------------KNIRTNGALVLSVAAGLSVGTLSRYLG--GTR 104

Query: 123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLS 181
           R +RVMPNTP  +G   + M      +E D  +  ++  SVG  +W  DE+    ITG+S
Sbjct: 105 RIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGITGIS 164

Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
           GSGPAY+F  ++AL +  +  G     A  L+  T  GA ++  ++G+   +L+ +V S 
Sbjct: 165 GSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSK 224

Query: 242 GGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
           GGTT   +    +      +   V A  +RS+E+ 
Sbjct: 225 GGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEME 259

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 37/246 (15%), Positives = 81/246 (32%), Gaps = 32/246 (13%)

Query: 13  LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
           +  +GA GKM   I + +  S          A+    + RD  + +G+ + +D +  ++ 
Sbjct: 14  VAILGAGGKMGARITRKIHDSAH-----HLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDE 67

Query: 72  SDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNT 131
           +DVVV ++   + +   + E+        + +        ++  +       +    P  
Sbjct: 68  ADVVVLALPDNIIEK--VAEDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCH 125

Query: 132 PSAVGE---------------AATVMSLGGTATEEDGELIGKL----FGSVGKIWRAD-E 171
           P    +                  ++       EE   +   +    +  V +  R   E
Sbjct: 126 PPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTE 185

Query: 172 KLFDAITGLSGS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 230
           +L     GLS      ++   + A+ +     G+ R+ AL      +    +M    G  
Sbjct: 186 QLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWF--GYS 243

Query: 231 PGQLKD 236
           P    D
Sbjct: 244 PKVPSD 249

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 49.0 bits (116), Expect = 4e-07
 Identities = 27/217 (12%), Positives = 68/217 (31%), Gaps = 17/217 (7%)

Query: 14  GFIGAGKMAESIAKGVAKSGVLPPDRICTAVH--SNLKRRDAFESIGVKVLSDNNAVVEY 71
             IGAG +A ++AK + + G          V+  +    R+  + +  +  +D   V  Y
Sbjct: 14  VLIGAGNLATNLAKALYRKGF-----RIVQVYSRTEESARELAQKVEAEYTTDLAEVNPY 68

Query: 72  SDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR-VMPN 130
           + + + S+K       +  +         + +   +G    + W     H      +   
Sbjct: 69  AKLYIVSLKDSAFAELL--QGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTF 126

Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR----ADEKLFDAITGLSGSGPA 186
           +     +   +      ++ ED   +  +  ++            K        + +   
Sbjct: 127 SKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTN 186

Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 223
           +++     L        LP ++ L L  +T      +
Sbjct: 187 HMYALAAELLK---KYNLPFDVMLPLIDETARKVHEL 220

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 10/155 (6%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           L F+G G +     + +     +          S  + R+  E  G K  +      E +
Sbjct: 5   LNFVGTGTLTRFFLECLKDRYEI----GYILSRSIDRARNLAEVYGGKAATLEKH-PELN 59

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTP 132
            VV   V         I   A       + +   SG      + +    S       ++ 
Sbjct: 60  GVVFVIVPD-----RYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSL 114

Query: 133 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 167
               E    +  G    E    ++ K+   +   +
Sbjct: 115 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	100.0
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	100.0
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	100.0
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	100.0
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	100.0
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	100.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	100.0
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.97
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.97
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.96
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.96
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.96
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.96
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.93
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.92
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.92
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.91
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.9
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.9
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.9
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.9
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.89
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.89
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.88
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.88
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.88
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.88
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.87
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.87
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.87
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.87
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.87
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.87
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.86
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.85
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.85
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.85
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.83
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.83
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.83
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.82
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.82
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.81
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.8
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.8
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.78
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.78
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.78
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.77
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.77
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.77
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.76
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.76
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.75
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.75
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.75
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.59
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.74
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.73
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.73
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.72
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.72
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.71
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.69
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.69
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.66
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.65
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.63
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.63
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.61
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.6
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.59
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.55
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.55
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.54
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.5
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.48
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.48
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.44
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.41
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.4
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.26
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.16
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.13
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.09
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.09
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	99.08
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.06
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.01
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.0
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.98
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.96
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.93
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.93
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.92
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.92
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.92
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.9
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.89
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.89
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.87
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.86
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.86
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.86
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.86
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.86
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.84
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.84
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.84
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.83
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.82
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.82
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.82
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.81
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.81
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.81
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.8
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.79
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.79
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.78
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.77
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.77
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.77
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.76
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.76
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.76
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.76
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.74
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.74
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.73
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.73
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.72
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.71
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.71
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.7
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.7
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.69
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.69
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.68
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.68
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.67
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.67
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.67
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.66
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.66
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.65
4had_A	350	Probable oxidoreductase protein; structural genomi	98.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.65
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.64
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.62
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.61
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.61
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.61
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.6
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.6
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.59
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.59
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.58
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.58
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.57
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.56
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.56
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.56
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.55
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.55
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.53
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.52
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.52
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.51
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.51
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.49
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.46
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.45
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.43
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.43
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.43
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.42
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.42
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.41
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.4
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.4
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.4
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.39
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.37
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.36
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.36
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.35
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.34
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.34
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.34
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.33
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.33
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.33
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.33
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.33
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.32
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.31
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.29
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.29
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.28
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.28
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.28
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.27
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.25
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.25
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.24
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.24
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.24
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.22
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.22
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.22
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.21
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.18
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.17
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.16
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.16
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.15
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.13
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.12
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.11
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.11
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.09
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.08
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.08
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.06
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	98.06
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.06
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.06
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.06
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.05
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.04
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.03
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.03
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.03
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.02
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.02
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.02
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.02
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.01
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.01
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.99
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.97
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.96
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.94
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.94
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.92
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.91
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.91
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.88
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.87
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.86
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.86
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.85
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.85
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.83
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.82
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.81
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.79
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.78
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.77
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.76
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.75
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.75
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.73
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.7
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.7
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.69
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.68
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.68
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.64
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.64
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.6
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.59
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.58
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.58
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.54
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.49
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.49
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.49
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.48
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.45
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.4
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.4
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.39
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.37
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.35
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.35
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.33
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.32
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.32
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.31
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.3
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.3
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.26
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.25
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.19
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.18
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.18
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.17
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.12
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.11
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.11
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.1
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.1
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.09
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.06
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.05
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.05
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.03
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.02
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.97
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.95
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.94
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.93
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	96.88
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.87
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.87
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.85
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	96.85
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.81
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.8
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	96.8
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.8
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.79
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.78
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.76
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.76
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.73
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.72
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.71
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.69
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.67
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.64
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.63
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.62
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.59
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	96.58
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	96.57
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.57
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.54
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.5
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.45
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.43
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.42
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.4
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.39
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.39
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.36
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.35
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.33
2csu_A	457	457AA long hypothetical protein; structural genomi	96.33
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.32
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.32
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.31
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.29
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.25
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.25
1lnq_A	336	MTHK channels, potassium channel related protein;	96.25
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.2
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.18
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.16
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.16
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.08
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.06
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.05
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.04
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.03
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.02
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.02
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.99
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	95.96
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.95
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.93
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	95.9
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.86
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.86
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	95.85
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.82
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.82
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.82
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	95.81
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.77
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.76
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.72
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.71
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.69
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.64
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.6
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.59
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.57
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	95.55
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.54
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.53
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.53
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.5
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.45
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.45
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.44
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.44
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.41
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.41
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.38
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.38
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.36
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.35
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.3
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.27
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.24
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.22
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.21
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	95.19
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.19
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.18
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.18
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.15
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.11
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.1
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	95.09
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	95.08
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.07
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.03
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.01
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.98
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.95
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.95
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.95
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.94
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	94.92
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.91
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.89
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.89
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	94.85
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.83
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.82
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.78
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.77
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.77
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	94.76
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	94.76
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	94.76
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.74
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.73
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.72
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.71
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.71
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.7
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.69
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.68
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.66
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	94.64
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.63
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.61
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.59
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.59
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.58
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.56
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.54
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.54
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	94.52
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.5
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.5
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.48
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.48
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.47
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.45
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.45
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.44
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.44
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.43
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.4
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.37
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.37
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	94.36
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.31
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.3
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.28
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	94.28

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=100.00  E-value=6.2e-52  Score=356.16  Aligned_cols=266  Identities=36%  Similarity=0.516  Sum_probs=241.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      |++|||+|||+|+||.+|+.+|.++|+ ++.+|++| ||++++++.+.+ .|+..+.++.++++++|+||+||||+.+.+
T Consensus         1 M~~~~I~iIG~G~mG~aia~~l~~~g~-~~~~V~v~-dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~   78 (280)
T 3tri_A            1 MNTSNITFIGGGNMARNIVVGLIANGY-DPNRICVT-NRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKM   78 (280)
T ss_dssp             -CCSCEEEESCSHHHHHHHHHHHHTTC-CGGGEEEE-CSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-CCCeEEEE-eCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHH
Confidence            456899999999999999999999996 66789999 999999999987 599888888899999999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCc
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK  165 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~  165 (276)
                      ++.++....+.+...+++..+|+ +.+.++++++. .+++|+|||+|..+++|++.+++++..++++++.++++|+.+|+
T Consensus        79 vl~~l~~~~l~~~~iiiS~~agi-~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~  157 (280)
T 3tri_A           79 VCEELKDILSETKILVISLAVGV-TTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGL  157 (280)
T ss_dssp             HHHHHHHHHHTTTCEEEECCTTC-CHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEE
T ss_pred             HHHHHHhhccCCCeEEEEecCCC-CHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCC
Confidence            99888321022212345555899 99999999974 78999999999999999999998888899999999999999998


Q ss_pred             eEEc-CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCch
Q 023866          166 IWRA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT  244 (276)
Q Consensus       166 ~~~~-~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~  244 (276)
                      .+++ +|+++|.+++++||+|+|++.++++|.+++++.|+|++++++++.+++.|+++++.+++.+|.+|++.++||||+
T Consensus       158 ~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~~v~spgGt  237 (280)
T 3tri_A          158 VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGT  237 (280)
T ss_dssp             EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHCCTTSH
T ss_pred             eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhccCCChH
Confidence            8655 788999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          245 TIAGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       245 t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      |+++|+.|++.||+..+.+|++++++|++||+
T Consensus       238 T~~~l~~le~~g~~~~~~~av~aa~~r~~el~  269 (280)
T 3tri_A          238 TEQAIKVLESGNLRELFIKALTAAVNRAKELS  269 (280)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999984

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=100.00  E-value=1.2e-44  Score=305.84  Aligned_cols=244  Identities=34%  Similarity=0.539  Sum_probs=191.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      +|||+|||+|+||.+|+.+|.++|++++.+|++| ||++++++.+.+ .|+..+.++.++++++|+||+||||+++++++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~-~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~   80 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICS-DLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASII   80 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEE-eCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHH
Confidence            3799999999999999999999997677799999 999999999876 69988888889999999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~  167 (276)
                      .++.. .++++..+++..+|+ +.+.+++.++ +.+++++|||+|...++|.+.++++++.+++.++.++++|+.+|..+
T Consensus        81 ~~l~~-~l~~~~~vvs~~~gi-~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~~~  158 (247)
T 3gt0_A           81 NEIKE-IIKNDAIIVTIAAGK-SIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTE  158 (247)
T ss_dssp             ---CC-SSCTTCEEEECSCCS-CHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEEEE
T ss_pred             HHHHh-hcCCCCEEEEecCCC-CHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCCEE
Confidence            88821 111112234444888 8899999886 46899999999999999998888887889999999999999999988


Q ss_pred             EcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHH
Q 023866          168 RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA  247 (276)
Q Consensus       168 ~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~  247 (276)
                      +++|+++|.+++++||+|+|++.++++|.+++++.|+|++++++++.+++.|+++++.+++.+|.+|++.++||||+|++
T Consensus       159 ~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~spgG~t~~  238 (247)
T 3gt0_A          159 IVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIE  238 (247)
T ss_dssp             ECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC------------------
T ss_pred             EeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCCchHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCC
Q 023866          248 GIHELEKSG  256 (276)
Q Consensus       248 ~l~~l~~~~  256 (276)
                      +|+.||++|
T Consensus       239 gl~~le~~~  247 (247)
T 3gt0_A          239 AVATLEEKG  247 (247)
T ss_dssp             ---------
T ss_pred             HHHHHHhCc
Confidence            999998864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=100.00  E-value=3.7e-42  Score=301.22  Aligned_cols=271  Identities=44%  Similarity=0.651  Sum_probs=230.6

Q ss_pred             CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         3 ~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      |....|++|||+|||+|+||.+|+.+|.++|+.++.+|++| +|+++  +++.+.+.|+.++.++.++++++|+||+|||
T Consensus        15 ~~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~-~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~   93 (322)
T 2izz_A           15 TENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMAS-SPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK   93 (322)
T ss_dssp             -------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC
T ss_pred             CchhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEE-CCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC
Confidence            34445678999999999999999999999993222399999 99986  8888888899888888888999999999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC----CCcEEEEecCccccccCcceEeecCCCCCHHHHHHH
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG----HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELI  156 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~----~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v  156 (276)
                      |+++.+++.++.. .+.++..+++..+|+ +.+.++++++    ..++++.+|++|..+++|.++++.++..+++..+.+
T Consensus        94 ~~~~~~vl~~l~~-~l~~~~ivvs~s~gi-~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v  171 (322)
T 2izz_A           94 PHIIPFILDEIGA-DIEDRHIVVSCAAGV-TISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLM  171 (322)
T ss_dssp             GGGHHHHHHHHGG-GCCTTCEEEECCTTC-CHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hcCCCCEEEEeCCCC-CHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHH
Confidence            9999999998821 111122333444788 7777776653    458999999999999888888877776778999999


Q ss_pred             HHHhhhcCceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 023866          157 GKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD  236 (276)
Q Consensus       157 ~~ll~~~G~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~  236 (276)
                      +++|+.+|..+++.++.+|.+++++|++|+|++.+++++.+++.+.|++++.+++++.+++.|+++++.+++.+|..|++
T Consensus       172 ~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l~~  251 (322)
T 2izz_A          172 EQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKD  251 (322)
T ss_dssp             HHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            99999999887788999999999999999999999999999999999999999999999999999998777778999999


Q ss_pred             hcCCCCchHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          237 DVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       237 ~v~sp~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      .+++|+|+|+.+++.+++.+++..+.+++.++++|++|++
T Consensus       252 ~v~sp~g~t~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~  291 (322)
T 2izz_A          252 NVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ  291 (322)
T ss_dssp             HHCCTTSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999863

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=100.00  E-value=3.8e-40  Score=280.02  Aligned_cols=256  Identities=31%  Similarity=0.529  Sum_probs=229.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ++|||+|||+|.||.+++..|.+.|+    +|.+| +|++++.+.+.+ .|+..+.+..++++++|+||+|+|++.+.++
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v   76 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETV   76 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHH
Confidence            56899999999999999999999998    99999 999999988876 5888777888888999999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      +.++.     ++..+++..+|+ +.+.+++.++. .++++.+|++|...++|.+.++.+...+++.++.++++|+.+|..
T Consensus        77 ~~~l~-----~~~~vv~~~~~~-~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G~~  150 (259)
T 2ahr_A           77 LKPLH-----FKQPIISMAAGI-SLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGST  150 (259)
T ss_dssp             HTTSC-----CCSCEEECCTTC-CHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             HHHhc-----cCCEEEEeCCCC-CHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence            87761     223344444788 88889888873 589999999999988888777777667899999999999999977


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      ++++++++|.+++++|++|+|++.+++++.+++.+.|+|++++++++.+++.++++++.+++.+|..|.+.+++|+|+|+
T Consensus       151 ~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~~~~  230 (259)
T 2ahr_A          151 FDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTI  230 (259)
T ss_dssp             EECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHH
T ss_pred             EEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHH
Confidence            88999999999999999999999999999999999999999999999999999999887777789999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          247 AGIHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .++++|++.|++..+.+|++++++|++||
T Consensus       231 ~~~~~l~~~g~~~~~~~a~~~~~~r~~~~  259 (259)
T 2ahr_A          231 AGLMELERLGLTATVSSAIDKTIDKAKSL  259 (259)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCChHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=100.00  E-value=2e-39  Score=275.95  Aligned_cols=259  Identities=34%  Similarity=0.560  Sum_probs=226.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |++|||+|||+|+||++|+.+|.++|+.++.+|++| ||++++      .|+....++.++++++|+||+|||+++++++
T Consensus         2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~-~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v   74 (262)
T 2rcy_A            2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYY-GPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDIAGSV   74 (262)
T ss_dssp             CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEE-CSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTTHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEE-eCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence            456899999999999999999999992122289999 999876      5888777888888999999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                      +.++.. .+ ++..+++..+|+ +.+.++++++. .++++++|++|...+.|.+.+++++..+++.++.++++|+.+|..
T Consensus        75 ~~~l~~-~l-~~~~vv~~~~gi-~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~~  151 (262)
T 2rcy_A           75 LNNIKP-YL-SSKLLISICGGL-NIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGII  151 (262)
T ss_dssp             HHHSGG-GC-TTCEEEECCSSC-CHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHH-hc-CCCEEEEECCCC-CHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence            988821 11 112344444888 88889988875 378899999999998887777777667889999999999999987


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      ++++++.+|.++++++++|+|++.+++++.+++.+.|++++.+++++.+++.++.++..+.+.+|.+|.+.+++|+++++
T Consensus       152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~t~~  231 (262)
T 2rcy_A          152 HEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITA  231 (262)
T ss_dssp             EECCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCCTTSHHH
T ss_pred             EEeCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChHHH
Confidence            88899999999999999999999999999999999999999999999999999998886656789999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          247 AGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      .+++.|++.+++..+.++++++++|+++++
T Consensus       232 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  261 (262)
T 2rcy_A          232 VGLYSLEKNSFKYTVMNAVEAACEKSKAMG  261 (262)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999975

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=100.00  E-value=4.6e-38  Score=267.65  Aligned_cols=255  Identities=30%  Similarity=0.485  Sum_probs=227.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||+|||+|+||.+++.+|.++| +    +|++| +|++++++.+.+ .|+..+.++.+++ ++|+||+|||++++++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAAC   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC----eEEEE-CCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhHHHHH
Confidence            68999999999999999999999 8    99999 999999998887 5988877888888 999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~  167 (276)
                      .++.  . . +..+++..+|+ +.+.+++.++. .++++++|++|...+.|.+.++.+...+++..+.+.++|+.+|..+
T Consensus        75 ~~l~--~-~-~~ivv~~~~g~-~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~  149 (263)
T 1yqg_A           75 KNIR--T-N-GALVLSVAAGL-SVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV  149 (263)
T ss_dssp             TTCC--C-T-TCEEEECCTTC-CHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE
T ss_pred             HHhc--c-C-CCEEEEecCCC-CHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE
Confidence            8772  1 1 13344444888 88889988874 5789999999998888887777776668899999999999999776


Q ss_pred             EcC-CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          168 RAD-EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       168 ~~~-e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      +++ ++.+|.+++++|++|+|++.+++++.+++.+.|++++++.+++.+++.++++++.+++.+|.+|.+.+++|+|+|.
T Consensus       150 ~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (263)
T 1yqg_A          150 WLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTH  229 (263)
T ss_dssp             ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHH
T ss_pred             EeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChhHH
Confidence            888 8899999999999999999999999999999999999999999999999999988777789999999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          247 AGIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      .+++.|++.+++..+.+++.++++|++|++
T Consensus       230 ~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~  259 (263)
T 1yqg_A          230 EAVEAFRRHRVAEAISEGVCACVRRSQEME  259 (263)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=2.3e-32  Score=234.45  Aligned_cols=248  Identities=10%  Similarity=0.066  Sum_probs=197.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||+|||+|+||++++..|.+.|+    +|++| +|++++.+.+.+.|+.  ...++.++ .++|+||+|||++.+.+++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~   74 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL   74 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH
Confidence            689999999999999999999998    99999 9999999988877763  45677777 8999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccH---HHHHHHcCCCcEEEEecCcccc----------ccCc-ceEeecCCCCCHHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTGHSRFIRVMPNTPSA----------VGEA-ATVMSLGGTATEEDGE  154 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~~~~vv~~~p~~~~~----------~~~g-~~~i~~~~~~~~~~~~  154 (276)
                      .++.. .+.++..+++. +++ +.   +.+.+.++  +++..+|.....          ...+ .+.+++..+.+++..+
T Consensus        75 ~~l~~-~~~~~~~vv~~-~~~-~~~~~~~~~~~~~--~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~  149 (279)
T 2f1k_A           75 EKLIP-HLSPTAIVTDV-ASV-KTAIAEPASQLWS--GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLA  149 (279)
T ss_dssp             HHHGG-GSCTTCEEEEC-CSC-CHHHHHHHHHHST--TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHH
T ss_pred             HHHHh-hCCCCCEEEEC-CCC-cHHHHHHHHHHhC--CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHH
Confidence            88721 11111222222 444 44   33444433  444444432111          0122 4556665566889999


Q ss_pred             HHHHHhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866          155 LIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP--RELALGLASQTVLGAASMVTKSGKHP  231 (276)
Q Consensus       155 ~v~~ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~--~~~a~~~~~~~~~g~~~~~~~~~~~~  231 (276)
                      .++++|+.+|. ++++++..++.++++++++|+|++.   ++.+++.+.|++  ++.+.+++.+++.+++++..   .+|
T Consensus       150 ~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~---al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p  223 (279)
T 2f1k_A          150 CLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA---ALIQACAGEKDGDILKLAQNLASSGFRDTSRVGG---GNP  223 (279)
T ss_dssp             HHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGG---SCH
T ss_pred             HHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH---HHHHHHHhcccccchhHHHhhcCCcccchhcccC---CCH
Confidence            99999999996 5788888999999999999998765   888888888987  78899999999999998874   689


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHh--CChHHHHH----HHHHHHHHHHhhc
Q 023866          232 GQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL  275 (276)
Q Consensus       232 ~~l~~~v~sp~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~~  275 (276)
                      ..|++.+++|+|+|.++|+.|++  .+++..+.    +++.++++|++|+
T Consensus       224 ~~~~~~~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~~~~~~~~~  273 (279)
T 2f1k_A          224 ELGTMMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGD  273 (279)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999  89999999    9999999999986

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.97  E-value=8e-30  Score=219.79  Aligned_cols=254  Identities=15%  Similarity=0.175  Sum_probs=189.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      |++|||+|||+|+||.+++.+|.++  |+    +|++| ||++++.+.+.+.|+  ..+.++.++++++|+||+|||++.
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~   78 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHY----KIVGY-NRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK   78 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTS----EEEEE-CSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCc----EEEEE-cCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH
Confidence            5678999999999999999999988  45    89999 999999988888776  355677788899999999999999


Q ss_pred             HHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcCC--CcEEEEecCccc---ccc-------Ccc-eEeecCCC
Q 023866           84 DKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTGH--SRFIRVMPNTPS---AVG-------EAA-TVMSLGGT  147 (276)
Q Consensus        84 ~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~~--~~vv~~~p~~~~---~~~-------~g~-~~i~~~~~  147 (276)
                      +.+++.++...++.+ ..++...+++ ..   +.+++.++.  .+++..+|....   ..+       .|. +.+++..+
T Consensus        79 ~~~v~~~l~~~~l~~-~~ivi~~~~~-~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~  156 (290)
T 3b1f_A           79 TIDFIKILADLDLKE-DVIITDAGST-KYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCL  156 (290)
T ss_dssp             HHHHHHHHHTSCCCT-TCEEECCCSC-HHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTT
T ss_pred             HHHHHHHHHhcCCCC-CCEEEECCCC-chHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCC
Confidence            999998872100111 1122222343 33   667777763  334444443110   111       333 45666656


Q ss_pred             CCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 023866          148 ATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT  225 (276)
Q Consensus       148 ~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~  225 (276)
                      .+++..+.++++|+.+|.. ++++++++|..++..++.|+++ +.+++.+.+    .|++.+.++.++.+++.++.+++.
T Consensus       157 ~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~----~g~~~~~~~~la~~~~~~~~rla~  232 (290)
T 3b1f_A          157 TKPNTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGD----FSESHEMTKHFAAGGFRDMTRIAE  232 (290)
T ss_dssp             CCTTHHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHCTHHHHHCCHHHHHTTGGGG
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cccchhhHHhhccccHHhhhhhhc
Confidence            6888999999999999976 6888899998766656555543 344545444    466667889999999999998873


Q ss_pred             hcCCChHHHHHhcCCCCchHHHHHHHHHh--CChHHHHH----HHHHHHHHHHhhc
Q 023866          226 KSGKHPGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL  275 (276)
Q Consensus       226 ~~~~~~~~l~~~v~sp~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~~  275 (276)
                         .+|..|++.+++|+++|.++++.|++  ..++..|.    +++.+.++|++++
T Consensus       233 ---~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~  285 (290)
T 3b1f_A          233 ---SEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQI  285 (290)
T ss_dssp             ---SCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               68999999999999999999999988  47888888    8899999998864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.97  E-value=8.1e-30  Score=221.77  Aligned_cols=253  Identities=15%  Similarity=0.173  Sum_probs=195.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchh-hhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNA-VVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~aDvI~lav~~~~~~~   86 (276)
                      .+||+|||+|.||.+|+.+|.++|+  ..+|++| ||++++++.+.+.|+  ..+.++.+ ++++||+||+|||++.+.+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~--~~~V~~~-dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~  109 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE  109 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCC--CCEEEEE-ECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHH
Confidence            4799999999999999999999997  3479999 999999998888887  45677788 8999999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcc--cHHHHHHHcCCCcEEEEecCccccc-c---------Cc-ceEeecCCCCCHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQ--RWSRWVEWTGHSRFIRVMPNTPSAV-G---------EA-ATVMSLGGTATEEDG  153 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~--~~~~l~~~l~~~~vv~~~p~~~~~~-~---------~g-~~~i~~~~~~~~~~~  153 (276)
                      ++.++.. .+++ ..++...+++-  ..+.+++.++. +++..||..+... |         .| .+.+++++..+++.+
T Consensus       110 vl~~l~~-~l~~-~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~  186 (314)
T 3ggo_A          110 IAKKLSY-ILSE-DATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL  186 (314)
T ss_dssp             HHHHHHH-HSCT-TCEEEECCSCCTHHHHHHHHHHGG-GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHH
T ss_pred             HHHHHhh-ccCC-CcEEEECCCCcHHHHHHHHHhcCC-CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHH
Confidence            9988721 1111 12222223330  24667776664 7787787754322 1         23 456777767889999


Q ss_pred             HHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 023866          154 ELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPG  232 (276)
Q Consensus       154 ~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~  232 (276)
                      +.++++|+.+|.. +++++++||.++++++++|++++.   +|.+...+.+.+.+++.++..++|+++++++.   .+|.
T Consensus       187 ~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~---~l~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~  260 (314)
T 3ggo_A          187 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPI  260 (314)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCCSSCCGGGCCTTTTTTHHHHTT---SCHH
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCcchHHHHhhccccHHHHHHHhc---CCHH
Confidence            9999999999975 889999999999999999998755   34444445566666778899999999999875   5899


Q ss_pred             HHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          233 QLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       233 ~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +|.+.+.++...+.+.|+.+++.  .+++.|.    +.+.+.++++++
T Consensus       261 ~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~  308 (314)
T 3ggo_A          261 MWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI  308 (314)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999988888999888775  5666665    567777877765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.96  E-value=9.4e-29  Score=212.75  Aligned_cols=239  Identities=14%  Similarity=0.168  Sum_probs=182.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      +|||+|||+ |+||++|+.+|.++|+    +|++| +|++++.+.+.+.|+... ++.++++++|+||+|||++.+.+++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~   84 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH----HLAAI-EIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNIIEKVA   84 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS----EEEEE-CCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchHHHHHH
Confidence            479999999 9999999999999998    99999 999999998888787654 6778889999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCcccc--------ccCc-------ceEeecCCCCCHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSA--------VGEA-------ATVMSLGGTATEEDG  153 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~--------~~~g-------~~~i~~~~~~~~~~~  153 (276)
                      .++.. .+.++..+++..+|. +.+.++++.++.++++.||+.|..        ...|       .+.++...+.+++..
T Consensus        85 ~~l~~-~l~~~~ivv~~s~~~-~~~~l~~~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~  162 (286)
T 3c24_A           85 EDIVP-RVRPGTIVLILDAAA-PYAGVMPERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHY  162 (286)
T ss_dssp             HHHGG-GSCTTCEEEESCSHH-HHHTCSCCCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHH
T ss_pred             HHHHH-hCCCCCEEEECCCCc-hhHHHHhhhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHH
Confidence            88821 111112223322444 555555433456899999998766        5566       333433333578899


Q ss_pred             HHHHHHhhhcCc----eEEcCCCCchhh-hhhc-CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 023866          154 ELIGKLFGSVGK----IWRADEKLFDAI-TGLS-GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS  227 (276)
Q Consensus       154 ~~v~~ll~~~G~----~~~~~e~~~~~~-~a~~-g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~  227 (276)
                      +.++++|+.+|.    ++++++++++.+ ++++ +++++|++.+++++.+++.+.|+|++++.+++.+++.+++.++.+ 
T Consensus       163 ~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-  241 (286)
T 3c24_A          163 AIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG-  241 (286)
T ss_dssp             HHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-
Confidence            999999999998    488899999998 7776 688899999999999999999999999999999999999977754 


Q ss_pred             CCChHHHHHhcCCCCchHHHHHHH-HHhCChHHHHH
Q 023866          228 GKHPGQLKDDVASPGGTTIAGIHE-LEKSGFRGILM  262 (276)
Q Consensus       228 ~~~~~~l~~~v~sp~g~t~~~l~~-l~~~~~~~~~~  262 (276)
                       .+|..|.+....+    ...++. +++.+++..+.
T Consensus       242 -~~p~~~~di~~~~----i~~~~~~l~~~~~~~~~~  272 (286)
T 3c24_A          242 -YSPKVPSDAALRL----MEFAKDIVVKEDWREALN  272 (286)
T ss_dssp             -SSCCC---CCSTT----HHHHHHHHBCTTGGGGGC
T ss_pred             -hCCchhHHHHHHH----HHHHHHHHhccCHHHhcC
Confidence             5788888777665    344444 55555554444

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.96  E-value=2.6e-29  Score=215.60  Aligned_cols=253  Identities=15%  Similarity=0.171  Sum_probs=188.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhc-CCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDvI~lav~~~~~~~   86 (276)
                      |+||+|||+|+||.+++..|.+.|+  ..+|++| +|++++.+.+.+.|+.  .+.++.++++ ++|+||+|||++.+.+
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~--~~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~   77 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE   77 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCC--CcEEEEE-eCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHH
Confidence            4699999999999999999999886  2379999 9999999888887864  3556778888 9999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCc-c-cHHHHHHHcCCCcEEEEecCcccc----------ccCcc-eEeecCCCCCHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGL-Q-RWSRWVEWTGHSRFIRVMPNTPSA----------VGEAA-TVMSLGGTATEEDG  153 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~-~-~~~~l~~~l~~~~vv~~~p~~~~~----------~~~g~-~~i~~~~~~~~~~~  153 (276)
                      ++.++.. .+.+ ..++...+++ . ..+.+++.++. .++..+|.....          ...|. +.+++....+++..
T Consensus        78 v~~~l~~-~l~~-~~iv~~~~~~~~~~~~~l~~~l~~-~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~  154 (281)
T 2g5c_A           78 IAKKLSY-ILSE-DATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL  154 (281)
T ss_dssp             HHHHHHH-HSCT-TCEEEECCSCCTHHHHHHHHHHGG-GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred             HHHHHHh-hCCC-CcEEEECCCCcHHHHHHHHHhccc-cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHH
Confidence            9887721 1111 1222221232 0 23566777663 344444422111          12454 56666656788999


Q ss_pred             HHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 023866          154 ELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPG  232 (276)
Q Consensus       154 ~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~  232 (276)
                      +.++++|+.+|.. ++++++.+|.++++++++|+++..   ++.+...+.|++++.+.+++.+++++++++..   .+|.
T Consensus       155 ~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p~  228 (281)
T 2g5c_A          155 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPI  228 (281)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCBTTBCGGGCCTTTGGGC---CC---SCHH
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcccchHHHHhhccccHHHHhHHhc---CCHH
Confidence            9999999999976 778888899999999999998522   33444444678878888999999999998864   6899


Q ss_pred             HHHHhcCCCCchHHHHHHHHHh--CChHHHHH----HHHHHHHHHHhh
Q 023866          233 QLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       233 ~l~~~v~sp~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~  274 (276)
                      .|.+.+++|+++|.++|+.|++  .+++..+.    +.+.+.++++++
T Consensus       229 ~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~~  276 (281)
T 2g5c_A          229 MWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI  276 (281)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999998  78888886    567788877765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.96  E-value=1.5e-28  Score=212.56  Aligned_cols=234  Identities=12%  Similarity=0.069  Sum_probs=172.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      ++||+||| +|+||++++.+|.++|+    +|++| +|+++.             ++.+++++||+||+|||++.+.+++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~----~V~~~-~~~~~~-------------~~~~~~~~aDvVilavp~~~~~~vl   82 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWA-------------VAESILANADVVIVSVPINLTLETI   82 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC----eEEEE-ECCccc-------------CHHHHhcCCCEEEEeCCHHHHHHHH
Confidence            46899999 99999999999999998    99999 998752             4567788999999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccH---HHHHHHcCCCcEEEEecCcccc--ccCc-ceEeecCCCCCHHHHHHHHHHhhh
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTGHSRFIRVMPNTPSA--VGEA-ATVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~~~~vv~~~p~~~~~--~~~g-~~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      .++.. .+.+ ..++...+++ ..   +.+.+.++ .+++..||.....  ...| .++++++.  +++..+.+.++|+.
T Consensus        83 ~~l~~-~l~~-~~iv~~~~sv-k~~~~~~~~~~~~-~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~~~~~~v~~l~~~  156 (298)
T 2pv7_A           83 ERLKP-YLTE-NMLLADLTSV-KREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQI  156 (298)
T ss_dssp             HHHGG-GCCT-TSEEEECCSC-CHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHH
T ss_pred             HHHHh-hcCC-CcEEEECCCC-CcHHHHHHHHhcC-CCEEeeCCCCCCCchhhcCCeEEEecCC--CHHHHHHHHHHHHH
Confidence            98821 1111 1122222455 44   33444443 3455555532111  1123 34455443  67889999999999


Q ss_pred             cCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHh
Q 023866          163 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDD  237 (276)
Q Consensus       163 ~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~  237 (276)
                      +|.. ++++++++|.++++++++|+|++.   ++++...+.|++.+.+.+++.++|++    ++++.   +.+|..|.+.
T Consensus       157 ~G~~~~~~~~~~~d~~~a~~~~~p~~~a~---~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria---~~~p~~~~di  230 (298)
T 2pv7_A          157 WGAKIYQTNATEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADI  230 (298)
T ss_dssp             TTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHH
T ss_pred             cCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence            9975 788999999999999999998632   23333445899999999999999999    67765   4689999999


Q ss_pred             cCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          238 VASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       238 v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +++|+++++ +|+.|++.  .++..+.    +++.+.++++++
T Consensus       231 ~~sn~~~~~-~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a~~  272 (298)
T 2pv7_A          231 IMDKSENLA-VIETLKQTYDEALTFFENNDRQGFIDAFHKVRD  272 (298)
T ss_dssp             HC----CHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999 99999884  7777877    788888888876

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=6.6e-29  Score=217.47  Aligned_cols=252  Identities=14%  Similarity=0.107  Sum_probs=183.6

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc----CCCEEE
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE----YSDVVV   76 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~----~aDvI~   76 (276)
                      |+..|..   +||+|||+|+||++|+.+|.++|+    +|++| ||++++++.+.+.|+..+.++.++++    +||+||
T Consensus         2 m~~~~~~---~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            2 MTTKDIS---RPVCILGLGLIGGSLLRDLHAANH----SVFGY-NRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             ----CCS---SCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEE
T ss_pred             CCccCCC---CEEEEEeecHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEE
Confidence            5555554   789999999999999999999998    99999 99999999888889877777777665    479999


Q ss_pred             EeeCcccHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcCCCcEEEEecCccccc-c---------Cc-ceEe
Q 023866           77 FSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTGHSRFIRVMPNTPSAV-G---------EA-ATVM  142 (276)
Q Consensus        77 lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~~~~vv~~~p~~~~~~-~---------~g-~~~i  142 (276)
                      +|||++.+.+++.++..  ..+ ..++...+++ ..   +.+++.+++.+++..||...... |         .| .+++
T Consensus        74 lavP~~~~~~vl~~l~~--~~~-~~iv~Dv~Sv-k~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~il  149 (341)
T 3ktd_A           74 LAVPMTAIDSLLDAVHT--HAP-NNGFTDVVSV-KTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVV  149 (341)
T ss_dssp             ECSCHHHHHHHHHHHHH--HCT-TCCEEECCSC-SHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEE
T ss_pred             EeCCHHHHHHHHHHHHc--cCC-CCEEEEcCCC-ChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEE
Confidence            99999999999988731  111 2233332444 43   34555544445666666533210 1         12 3667


Q ss_pred             ecCCCCCHH--------HHHHHHHHhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 023866          143 SLGGTATEE--------DGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       143 ~~~~~~~~~--------~~~~v~~ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~  213 (276)
                      ++++..+++        .++.+.++|+.+|. ++++++++||.++|+++|+|++++..   |......   +.+.+.++.
T Consensus       150 tp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~a---L~~~~~~---~~~~~~~la  223 (341)
T 3ktd_A          150 TFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAET---LAIVGDN---GGALSLSLA  223 (341)
T ss_dssp             CCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH---HHHHHHH---THHHHHHHC
T ss_pred             EeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHH---HHHHhhc---chHHHHHHc
Confidence            766656667        89999999999995 58899999999999999999988663   3333322   246788899


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHHH---HHHHHHHHHh
Q 023866          214 SQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILMN---AVVAAAKRSR  273 (276)
Q Consensus       214 ~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~---a~~~~~~r~~  273 (276)
                      .++|++.+++..   .+|.+|.+.+.+|.+.+.+.|+.+++.  .+++.|.+   .+.+.+++++
T Consensus       224 a~gfrd~tRia~---s~p~lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d~~l~~~~~~~~  285 (341)
T 3ktd_A          224 AGSYRDSTRVAG---TDPGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQPNIEQLADNGY  285 (341)
T ss_dssp             CHHHHHHTGGGG---SCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             cccHHHHHHHhc---CCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            999999998854   699999999999999999998888764  44444432   3444455444

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.93  E-value=3.5e-26  Score=204.30  Aligned_cols=217  Identities=15%  Similarity=0.130  Sum_probs=168.0

Q ss_pred             CCC-CeEEEEcccHHHHHHHHHHHhC------CCCCCCeEEEEeCCC-HHHHHHHHHcCcee----ccCchhhhcCCCEE
Q 023866            8 AES-FILGFIGAGKMAESIAKGVAKS------GVLPPDRICTAVHSN-LKRRDAFESIGVKV----LSDNNAVVEYSDVV   75 (276)
Q Consensus         8 ~~~-~kIgiIG~G~mG~~la~~l~~~------g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~----~~~~~~~~~~aDvI   75 (276)
                      .+. +||||||+|+||.+++.+|+++      |+    +|+++ .|+ +...+...+.|+..    ..++.+++++||+|
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~----~ViVg-~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVV  125 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKIG-LRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLV  125 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCC----EEEEE-ECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEE
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCC----EEEEE-eCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEE
Confidence            345 8999999999999999999999      98    88877 554 44455566678765    25788999999999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHH---HcC-CCcEEEEecCccccc-------c-----Ccc
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE---WTG-HSRFIRVMPNTPSAV-------G-----EAA  139 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~---~l~-~~~vv~~~p~~~~~~-------~-----~g~  139 (276)
                      |++|||+...+++.++.. .+++ ..+++..+|+ ++..+++   .++ +.+++++|||+|...       |     +|+
T Consensus       126 ILaVP~~~~~eVl~eI~p-~LK~-GaILs~AaGf-~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv  202 (525)
T 3fr7_A          126 LLLISDAAQADNYEKIFS-HMKP-NSILGLSHGF-LLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGI  202 (525)
T ss_dssp             EECSCHHHHHHHHHHHHH-HSCT-TCEEEESSSH-HHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSC
T ss_pred             EECCChHHHHHHHHHHHH-hcCC-CCeEEEeCCC-CHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCc
Confidence            999999988888887721 1111 1223333888 8888876   444 578999999999986       4     677


Q ss_pred             e-EeecCCCCCHHHHHHHHHHhhhcCceEE--------cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 023866          140 T-VMSLGGTATEEDGELIGKLFGSVGKIWR--------ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL  210 (276)
Q Consensus       140 ~-~i~~~~~~~~~~~~~v~~ll~~~G~~~~--------~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~  210 (276)
                      + .++.....+.+..+.+..+++.+|...+        ..++.++..++++|++|+|+    +++.+.+++.|++++.|+
T Consensus       203 ~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAli----eA~~d~lVe~G~~pe~Ay  278 (525)
T 3fr7_A          203 NSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV----EALFRRYTEQGMDEEMAY  278 (525)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHH----HHHHHHHHHTTCCHHHHH
T ss_pred             cEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHH----HHHHHHHHHcCCCHHHHH
Confidence            7 5665566778899999999999997522        12346777889999999964    788888999999999999


Q ss_pred             HHHHHHHH-HHHHHHHhcCCChHHHHHhc
Q 023866          211 GLASQTVL-GAASMVTKSGKHPGQLKDDV  238 (276)
Q Consensus       211 ~~~~~~~~-g~~~~~~~~~~~~~~l~~~v  238 (276)
                      .+..+++. +.++++.+.|.  ..+.+.+
T Consensus       279 ~~~~qel~~~i~~li~e~G~--~~m~~~~  305 (525)
T 3fr7_A          279 KNTVEGITGIISKTISKKGM--LEVYNSL  305 (525)
T ss_dssp             HHHHHHHHTHHHHHHHHHCH--HHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhHH--HHHHHHc
Confidence            99999988 99999987653  3455555

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.92  E-value=2.5e-24  Score=185.76  Aligned_cols=251  Identities=15%  Similarity=0.130  Sum_probs=175.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v   87 (276)
                      +|+||||||+|+||.+|+++|+++||    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|.. ++++|
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V   76 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL   76 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHH
Confidence            56799999999999999999999999    99999 99999999999999999999999999999999999865 68888


Q ss_pred             HHHHhhccc----cccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCc-ceEeecCCCCCHHHHHH
Q 023866           88 VITEEAFGF----CCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEA-ATVMSLGGTATEEDGEL  155 (276)
Q Consensus        88 l~~~~~~~~----~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g-~~~i~~~~~~~~~~~~~  155 (276)
                      +...  .++    .++.-++.. +.+ ++   .++.+.+.  +..++.+ |-  .|.....| .++++.+   +++.+++
T Consensus        77 ~~~~--~g~~~~~~~g~iiId~-sT~-~p~~~~~~a~~~~~~G~~~lDa-PVsGg~~~A~~G~L~imvGG---~~~~~~~  148 (300)
T 3obb_A           77 YLDD--DGLLAHIAPGTLVLEC-STI-APTSARKIHAAARERGLAMLDA-PVSGGTAGAAAGTLTFMVGG---DAEALEK  148 (300)
T ss_dssp             HHSS--SSSTTSCCC-CEEEEC-SCC-CHHHHHHHHHHHHTTTCEEEEC-CEESCHHHHHHTCEEEEEES---CHHHHHH
T ss_pred             Hhch--hhhhhcCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCEEEec-CCCCCHHHHHhCCEEEEEeC---CHHHHHH
Confidence            8653  121    111112221 444 44   34444443  3455543 21  12112234 3555655   7899999


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcC---
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSG---  228 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~---  228 (276)
                      ++++|+.+|+. +++++.---..+.+.  .+.+++..+.++.|+   +.+.|+|++...+++..+..++..+.....   
T Consensus       149 ~~p~l~~~g~~i~~~G~~G~g~~~Kl~--~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~  226 (300)
T 3obb_A          149 ARPLFEAMGRNIFHAGPDGAGQVAKVC--NNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPG  226 (300)
T ss_dssp             HHHHHHHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTT
T ss_pred             HHHHHHHhCCCEEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccc
Confidence            99999999975 888875433333332  244556667777776   469999999999999887766555432110   


Q ss_pred             CChHHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          229 KHPGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       229 ~~~~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      .....+....++|++.....++++       ++.+++-.+.++..+.|+++.+
T Consensus       227 ~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~  279 (300)
T 3obb_A          227 VMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLK  279 (300)
T ss_dssp             TSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence            111234455668988888777654       3457777888888888888765

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.92  E-value=4.6e-24  Score=187.45  Aligned_cols=219  Identities=20%  Similarity=0.195  Sum_probs=161.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +.+||+|||+|+||++++.+|.+.|+    +|+++ +|++++ .+.+.+.|+... +..+++++||+||+|||++...++
T Consensus        15 ~~~~I~IIG~G~mG~alA~~L~~~G~----~V~~~-~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~~~v   88 (338)
T 1np3_A           15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL   88 (338)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCcC----EEEEE-ECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHHHHH
Confidence            46899999999999999999999998    89999 998766 555666888766 777888999999999999999999


Q ss_pred             HH-HHhhccccccCCcccCCCCcccHHHHHHHc-C-CCcEEEEecCcccc-------ccCcceEe-ecCCCCCHHHHHHH
Q 023866           88 VI-TEEAFGFCCCRSEIERPSGLQRWSRWVEWT-G-HSRFIRVMPNTPSA-------VGEAATVM-SLGGTATEEDGELI  156 (276)
Q Consensus        88 l~-~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l-~-~~~vv~~~p~~~~~-------~~~g~~~i-~~~~~~~~~~~~~v  156 (276)
                      +. ++.. .++++..++ ..+|+ +. .+.... + +..+++.||+.|..       .|.|...+ ++....+++..+.+
T Consensus        89 ~~~~i~~-~l~~~~ivi-~~~gv-~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~  164 (338)
T 1np3_A           89 YKEEIEP-NLKKGATLA-FAHGF-SI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVA  164 (338)
T ss_dssp             HHHHTGG-GCCTTCEEE-ESCCH-HH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHH
T ss_pred             HHHHHHh-hCCCCCEEE-EcCCc-hh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHH
Confidence            98 7720 111111122 22566 55 444433 3 24689999988864       45566544 55555677889999


Q ss_pred             HHHhhhcCc----eEEcCC---CCchhh---hhhcCchHHHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHHH-HH
Q 023866          157 GKLFGSVGK----IWRADE---KLFDAI---TGLSGSGPAYIFLAIEALADGGVAAGLPRELA-------LGLASQT-VL  218 (276)
Q Consensus       157 ~~ll~~~G~----~~~~~e---~~~~~~---~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a-------~~~~~~~-~~  218 (276)
                      ..+++.+|.    .++++.   +..+.+   ++++|++|++++..++.|+    +.|++++.+       .+++.++ ..
T Consensus       165 ~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~----~~Gl~~~~a~~e~~~~~~~~~~~~~~  240 (338)
T 1np3_A          165 LSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLV----EAGYAPEMAYFECLHELKLIVDLMYE  240 (338)
T ss_dssp             HHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH----HTTCCHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHH----HcCCCHHHHHHHhhhHHHHHHHHHHh
Confidence            999999997    555653   344555   3677779998877666554    689999888       6778888 46


Q ss_pred             HH-HHHHHhcCCChHHHHHhcCCCC
Q 023866          219 GA-ASMVTKSGKHPGQLKDDVASPG  242 (276)
Q Consensus       219 g~-~~~~~~~~~~~~~l~~~v~sp~  242 (276)
                      |. ..+ +..+.+|.+|.+.+++|+
T Consensus       241 gg~~~~-r~a~s~p~~~~d~~~~~~  264 (338)
T 1np3_A          241 GGIANM-NYSISNNAEYGEYVTGPE  264 (338)
T ss_dssp             HHHHHH-HHHSCHHHHHHHHHHHHH
T ss_pred             cCHHHH-HHhcCCHHHHhhhhcCCc
Confidence            66 444 656789999999998887

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.91  E-value=1.6e-23  Score=180.73  Aligned_cols=249  Identities=11%  Similarity=0.132  Sum_probs=162.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~   89 (276)
                      .||||||+|+||.+|+.+|+++||    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|+. ++++++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~   80 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGY----ELVVW-NRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS   80 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC----EEEEC--------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH
Confidence            489999999999999999999999    99999 99999999999999999999999999999999999865 4555542


Q ss_pred             HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEe-cCccccccCcc-eEeecCCCCCHHHHHHHHHHhhh
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~-p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      ......+.++.-++.. +.+ ++   .++.+.+.  +..++.+- ...|.....|. ++++.+   +++.+++++++|+.
T Consensus        81 ~~~~~~~~~~~iiid~-sT~-~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG---~~~~~~~~~~~l~~  155 (297)
T 4gbj_A           81 MELVEKLGKDGVHVSM-STI-SPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG---NAGAKERIKPIVEN  155 (297)
T ss_dssp             HHHHHHHCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE---CHHHHHHHHHHHHT
T ss_pred             HHHHhhcCCCeEEEEC-CCC-ChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc---chhHHHHHHHHHHH
Confidence            2100111111222322 444 44   33444443  34454431 11122222333 444544   78999999999999


Q ss_pred             cCce-EEcCCC-CchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 023866          163 VGKI-WRADEK-LFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD  237 (276)
Q Consensus       163 ~G~~-~~~~e~-~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~  237 (276)
                      +|+. ++++++ ..-..+.+.  .+.+.+..+.++.|+   +.+.|+|++..++++..+..++..+-.    ....+.+.
T Consensus       156 ~g~~i~~~g~~~G~g~~~Kl~--~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~----~~~~~~~~  229 (297)
T 4gbj_A          156 FVKGVFDFGDDPGAANVIKLA--GNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQN----YGKLVASN  229 (297)
T ss_dssp             TCSEEEECCSCTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHH----HHHHHHHT
T ss_pred             hhCCeEEecCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhc----cCccccCC
Confidence            9975 777753 233333332  344566667777776   579999999999999887766554432    23444444


Q ss_pred             cCCC-CchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          238 VASP-GGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       238 v~sp-~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      -+.| +++....++++       ++.+++-.+.+++.+.|+++.+.
T Consensus       230 ~~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~  275 (297)
T 4gbj_A          230 TYEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAK  275 (297)
T ss_dssp             CCCSCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhC
Confidence            4455 66777666654       45688888888888888887653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=182.54  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=175.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHH
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDK   85 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~   85 (276)
                      ++.+|||+|||+|.||.+++..|.+.|+    +|++| +|++++.+.+.+.|+....++.++++++|+||+||| +++++
T Consensus        27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~  101 (316)
T 2uyy_A           27 TPTDKKIGFLGLGLMGSGIVSNLLKMGH----TVTVW-NRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAK  101 (316)
T ss_dssp             CCCSSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHH
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHH
Confidence            3446899999999999999999999998    99999 999999998888888887788888899999999999 78898


Q ss_pred             HHHHHHh--hccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEE-ecCccccccCcceEeecCCCCCHHHHHHHHHH
Q 023866           86 AAVITEE--AFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        86 ~vl~~~~--~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l  159 (276)
                      +++.++.  ...+.++..++...++. .+.+.+.+.++  +..++.. +++.+...+.|.+.++.+.  +++..+.+.++
T Consensus       102 ~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g--~~~~~~~v~~l  179 (316)
T 2uyy_A          102 DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG--DRGLYEDCSSC  179 (316)
T ss_dssp             HHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEE--CHHHHHHTHHH
T ss_pred             HHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCC--CHHHHHHHHHH
Confidence            8887541  00111112223221222 02345555553  3445543 3344444455554443222  67889999999


Q ss_pred             hhhcCce-EEcCCCC-----chhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          160 FGSVGKI-WRADEKL-----FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       160 l~~~G~~-~~~~e~~-----~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      |+.+|.. ++.++..     .....++.   ..++..+.+++.. +.+.|++++++.+++..+..+++.+...   .|..
T Consensus       180 l~~~g~~~~~~~~~~~~~~~K~~~n~~~---~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~~~~s~~~~~~---~~~~  252 (316)
T 2uyy_A          180 FQAMGKTSFFLGEVGNAAKMMLIVNMVQ---GSFMATIAEGLTL-AQVTGQSQQTLLDILNQGQLASIFLDQK---CQNI  252 (316)
T ss_dssp             HHHHEEEEEECSSTTHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHSTTCCHHHHHH---HHHH
T ss_pred             HHHhcCCEEEeCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHcCCCHHHHHHHHHcCCCCCHHHHHh---hHHh
Confidence            9999976 5665522     11222221   1234455555554 7799999999999988877665555432   3556


Q ss_pred             HHHhcCCCCchHHH-------HHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          234 LKDDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       234 l~~~v~sp~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      +.++ ++|+++++.       .++..++.|++..+.+++.+.++++.+.+
T Consensus       253 l~~~-~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g  301 (316)
T 2uyy_A          253 LQGN-FKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALD  301 (316)
T ss_dssp             HHTC-CCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             hcCC-CCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence            6655 478888877       45567888999999999999999998753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.90  E-value=3.2e-22  Score=173.50  Aligned_cols=247  Identities=17%  Similarity=0.170  Sum_probs=168.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ..++||||||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|||+. ++++
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~   81 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGK----RVAIW-NRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHE   81 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHH
Confidence            356899999999999999999999999    99999 99999999998889988889999999999999999966 5888


Q ss_pred             HHH--HHhhccccccCCcccCCCCc--ccHHHHHHHcC--CCcEEEEecC--ccccccC-cceEeecCCCCCHHHHHHHH
Q 023866           87 AVI--TEEAFGFCCCRSEIERPSGL--QRWSRWVEWTG--HSRFIRVMPN--TPSAVGE-AATVMSLGGTATEEDGELIG  157 (276)
Q Consensus        87 vl~--~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~--~~~vv~~~p~--~~~~~~~-g~~~i~~~~~~~~~~~~~v~  157 (276)
                      ++.  .+.  ...++..++.. +++  .....+.+.+.  +.+++.+ |.  .|...+. +.+.++.+   +++.++.++
T Consensus        82 v~~~~~l~--~~~~g~ivid~-st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~~~~~~~~i~~gg---~~~~~~~~~  154 (306)
T 3l6d_A           82 VLGMPGVA--RALAHRTIVDY-TTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRNVGHRESHSIHTG---DREAFEQHR  154 (306)
T ss_dssp             HHTSTTHH--HHTTTCEEEEC-CCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGGTTCTTCEEEEEE---CHHHHHHHH
T ss_pred             Hhcccchh--hccCCCEEEEC-CCCCHHHHHHHHHHHHHcCCeEEec-ccccCcccccCCceEEEEcC---CHHHHHHHH
Confidence            875  441  11121223332 333  02234444442  3456554 22  1222232 34455544   689999999


Q ss_pred             HHhhhcCc-eEEc--CCC-CchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCC
Q 023866          158 KLFGSVGK-IWRA--DEK-LFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVL-GAASMVTKSGK  229 (276)
Q Consensus       158 ~ll~~~G~-~~~~--~e~-~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~-g~~~~~~~~~~  229 (276)
                      ++|+.+|. .+++  +++ .......      .+++..+.++.|+   +.+.|+|++.+.+++..+.. +...++..  .
T Consensus       155 ~ll~~lg~~~~~~~~g~~~g~g~~~k------~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~--~  226 (306)
T 3l6d_A          155 ALLEGLAGHTVFLPWDEALAFATVLH------AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEE--A  226 (306)
T ss_dssp             HHHHTTCSEEEECCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHhcCCEEEecCCCCccHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHH--H
Confidence            99999964 5777  652 1111111      2333445556555   57999999999999998864 55555543  2


Q ss_pred             ChHHHHHhcCCCCchH-HH-------HHHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          230 HPGQLKDDVASPGGTT-IA-------GIHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       230 ~~~~l~~~v~sp~g~t-~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .| .+.+..++|++++ ..       .++..++.|++..+.+++.+.|+++.+.
T Consensus       227 ~~-~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  279 (306)
T 3l6d_A          227 VR-RLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAM  279 (306)
T ss_dssp             HH-HHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Confidence            23 4555555787643 33       3445677799999999999999998764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.90  E-value=1.7e-23  Score=180.45  Aligned_cols=250  Identities=15%  Similarity=0.142  Sum_probs=174.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v   87 (276)
                      ++|||+|||+|.||..++..|.+.|+    +|++| + ++++.+.+.+.|+....++.++++++|+||+|||.. +++.+
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v   75 (295)
T 1yb4_A            2 NAMKLGFIGLGIMGSPMAINLARAGH----QLHVT-T-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDV   75 (295)
T ss_dssp             --CEEEECCCSTTHHHHHHHHHHTTC----EEEEC-C-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-c-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence            56899999999999999999999998    99999 9 998888888888887778888889999999999755 58888


Q ss_pred             HH---HHhhccccccCCcccCCCCc-ccHHHHHHHcCCCcEEEEecCcccccc-----Ccc-eEeecCCCCCHHHHHHHH
Q 023866           88 VI---TEEAFGFCCCRSEIERPSGL-QRWSRWVEWTGHSRFIRVMPNTPSAVG-----EAA-TVMSLGGTATEEDGELIG  157 (276)
Q Consensus        88 l~---~~~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~~~~vv~~~p~~~~~~~-----~g~-~~i~~~~~~~~~~~~~v~  157 (276)
                      +.   ++. ..+.++..+++..++. .+.+.+.+.++. ..++++. .|...+     .|. +.++.+   +++..+.+.
T Consensus        76 ~~~~~~l~-~~l~~~~~vv~~s~~~~~~~~~l~~~~~~-~g~~~~~-~p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~  149 (295)
T 1yb4_A           76 LFGEHGCA-KTSLQGKTIVDMSSISPIETKRFAQRVNE-MGADYLD-APVSGGEIGAREGTLSIMVGG---EQKVFDRVK  149 (295)
T ss_dssp             HHSTTSST-TSCCTTEEEEECSCCCHHHHHHHHHHHHT-TTEEEEE-CCEESHHHHHHHTCEEEEEES---CHHHHHHHH
T ss_pred             HhCchhHh-hcCCCCCEEEECCCCCHHHHHHHHHHHHH-cCCeEEE-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHH
Confidence            86   441 0111112233322442 124566666653 2233332 233222     334 334433   788899999


Q ss_pred             HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      ++|+.+|.. +++++........+.  .+.+.+.+...+.|+   +.+.|++.+++.+++..+..++..+..    .+..
T Consensus       150 ~ll~~~g~~~~~~~~~~~~~~~Kl~--~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~----~~~~  223 (295)
T 1yb4_A          150 PLFDILGKNITLVGGNGDGQTCKVA--NQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEV----HGER  223 (295)
T ss_dssp             HHHHHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHH----HHHH
T ss_pred             HHHHHhcCCEEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHH----hhHH
Confidence            999999975 666664444333332  133555556667776   779999999999988877655433322    3556


Q ss_pred             HHHhcCCCCchHHH-------HHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          234 LKDDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       234 l~~~v~sp~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      +.+..++|++.++.       +++..++.|++..+.+++.+.++|+.+++
T Consensus       224 ~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  273 (295)
T 1yb4_A          224 MINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANG  273 (295)
T ss_dssp             HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcC
Confidence            77777889999988       77788899999999999999999998753

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.90  E-value=1.5e-23  Score=179.27  Aligned_cols=233  Identities=12%  Similarity=0.080  Sum_probs=156.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeE-EEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +|||+|||+|+||.+|+.+|.++ +    +| .+| +|++++++.+.+ .|. .+.++.++++++|+||+|||++.+.++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-~----~v~~v~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~~~v   74 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-Y----EIGYIL-SRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYIKTV   74 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC---------CCCEE-CSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-C----cEEEEE-eCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHHHHH
Confidence            37999999999999999999887 7    88 589 999999988875 577 666777888899999999999999999


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccccc--CcceEeecCCCCCHHHHHHHHHHhhhcC
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGSVG  164 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~--~g~~~i~~~~~~~~~~~~~v~~ll~~~G  164 (276)
                      +.++.    .++..+++..+++ +.+.+++... ..+.+..+|+.|...+  .+......+   +++.++.++++|+.+|
T Consensus        75 ~~~l~----~~~~ivi~~s~~~-~~~~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~lG  146 (276)
T 2i76_A           75 ANHLN----LGDAVLVHCSGFL-SSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEIS  146 (276)
T ss_dssp             HTTTC----CSSCCEEECCSSS-CGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHC
T ss_pred             HHHhc----cCCCEEEECCCCC-cHHHHHHhhccccchhhhcCCCchhHHHhCCCeEEEEe---ChHHHHHHHHHHHHhC
Confidence            88771    1223334332455 5555544311 0011122455454433  333333333   4667999999999999


Q ss_pred             c-eEEcCCCC---chhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCC
Q 023866          165 K-IWRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS  240 (276)
Q Consensus       165 ~-~~~~~e~~---~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~s  240 (276)
                      . ++++++++   ++..++++++.+.+++..+.   +.+.+.|++++++.  +.+++.++.+++.+.+  |   .+.+++
T Consensus       147 ~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~---~~~~~~Gl~~~~a~--~~~l~~~~~~~~~~~g--p---~~~~tg  216 (276)
T 2i76_A          147 GKYFVIPSEKKKAYHLAAVIASNFPVALAYLSK---RIYTLLGLDEPELL--IHTLMKGVADNIKKMR--V---ECSLTG  216 (276)
T ss_dssp             SCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHH---HHHHTTTCSCHHHH--HHHHHHHHHHHHHHSC--G---GGGCCS
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChHHHH--HHHHHHHHHHHHHhcC--h---HhhCCC
Confidence            5 68888764   45667777777766543332   45678999999775  8889999999887765  4   778899


Q ss_pred             CC-----chHHHHHHHHHh--CC--hHHHHHHHHHH
Q 023866          241 PG-----GTTIAGIHELEK--SG--FRGILMNAVVA  267 (276)
Q Consensus       241 p~-----g~t~~~l~~l~~--~~--~~~~~~~a~~~  267 (276)
                      |.     ++++.+++.|++  ..  ++..+.+++.+
T Consensus       217 P~~r~D~~t~~~~l~~l~~~~~~~~~y~~l~~~~~~  252 (276)
T 2i76_A          217 PVKRGDWQVVEEERREYEKIFGNTVLYDEIVKLLRE  252 (276)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence            98     999999999987  34  55555555443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.89  E-value=2.6e-23  Score=178.75  Aligned_cols=248  Identities=13%  Similarity=0.054  Sum_probs=172.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      ||||+|||+|.||..++..|.+ |+    +|++| +|++++.+.+.+.|+..+. +.++++++|+||+|||+. ++++++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~----~V~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~   73 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RF----PTLVW-NRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA   73 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TS----CEEEE-CSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CC----eEEEE-eCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH
Confidence            3789999999999999999999 98    99999 9999999888877776655 778888999999999976 488888


Q ss_pred             HHHhhccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEEecCc--cccccCcceEeecCCCCCHHHHHHHHHHhhhc
Q 023866           89 ITEEAFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRVMPNT--PSAVGEAATVMSLGGTATEEDGELIGKLFGSV  163 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~  163 (276)
                      .++.. .+.++..++...++. .+.+.+.+.++  +..+++. |..  +...+.|...+..+  .+++..+.+.++| .+
T Consensus        74 ~~l~~-~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~ll-~~  148 (289)
T 2cvz_A           74 EALYP-YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG--GPEEAVERVRPFL-AY  148 (289)
T ss_dssp             HHHTT-TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE--SCHHHHHHHGGGC-TT
T ss_pred             HHHHh-hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC--CCHHHHHHHHHHH-hh
Confidence            77721 111112222211221 03456666664  2345554 532  22223344233323  2788899999999 99


Q ss_pred             Cce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHhc
Q 023866          164 GKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDV  238 (276)
Q Consensus       164 G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~-~~l~~~v  238 (276)
                      |.. +++++.......  ..+.+.+.+.+...+.|+   +.+.|++++++.+++..+..++ .++..  ..+ ..+.+++
T Consensus       149 g~~~~~~~~~~~~~~~--k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~--~~~~~~l~~~~  223 (289)
T 2cvz_A          149 AKKVVHVGPVGAGHAV--KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRS-NATEN--LIPQRVLTRAF  223 (289)
T ss_dssp             EEEEEEEESTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCB-HHHHH--THHHHTTTSCC
T ss_pred             cCCeEEcCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCC-HHHHH--hccchhhcCCC
Confidence            974 666664333333  334577777777888887   7799999999999888776554 33332  234 4556666


Q ss_pred             CCCCchHHH-------HHHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          239 ASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       239 ~sp~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                       +|++.++.       .++..++.|++..+.+++.+.++|+.++
T Consensus       224 -~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~  266 (289)
T 2cvz_A          224 -PKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRE  266 (289)
T ss_dssp             -CCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             -CCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence             78888774       4456677899999999999999999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.88  E-value=1.3e-21  Score=170.03  Aligned_cols=249  Identities=15%  Similarity=0.174  Sum_probs=168.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~   86 (276)
                      .++|||+|||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|||. +++++
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF----KVTVW-NRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHH
Confidence            467999999999999999999999999    99999 9999999999999999888999999999999999985 57888


Q ss_pred             HH---HHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCc--cccccCcc-eEeecCCCCCHHHHHH
Q 023866           87 AV---ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNT--PSAVGEAA-TVMSLGGTATEEDGEL  155 (276)
Q Consensus        87 vl---~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~--~~~~~~g~-~~i~~~~~~~~~~~~~  155 (276)
                      ++   .++.. .+.++..++.. +++ +.   +.+.+.+.  +..++. +|..  +.....|. +.++.+   +++.++.
T Consensus        94 v~~~~~~l~~-~l~~g~~vv~~-st~-~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~  166 (310)
T 3doj_A           94 VVFDKGGVLE-QICEGKGYIDM-STV-DAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLIILAAG---DKALFEE  166 (310)
T ss_dssp             HHHSTTCGGG-GCCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHH
T ss_pred             HHhCchhhhh-ccCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeEEEEcC---CHHHHHH
Confidence            88   54410 11111222222 444 33   33444432  334443 2321  11112233 344443   6889999


Q ss_pred             HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866          156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP  231 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~  231 (276)
                      ++++|+.+|.. +++++......+.+.  .+.+++..+..+.|+   +.+.|+++++..+++..+...+..+ ..   ..
T Consensus       167 ~~~ll~~~g~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~~---~~  240 (310)
T 3doj_A          167 SIPAFDVLGKRSFYLGQVGNGAKMKLI--VNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMF-KG---KG  240 (310)
T ss_dssp             HHHHHHHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHH-HH---HH
T ss_pred             HHHHHHHhCCCEEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHH-HH---Hh
Confidence            99999999975 778764433344333  244545555555555   5689999999999887654333222 21   12


Q ss_pred             HHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          232 GQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       232 ~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      ..+.+..+.|++....+.+++       ++.|+...+.+++.+.++++.+
T Consensus       241 ~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  290 (310)
T 3doj_A          241 PSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARS  290 (310)
T ss_dssp             HHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            234445557888777676665       5678888999999999988765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.88  E-value=2.6e-22  Score=173.37  Aligned_cols=250  Identities=18%  Similarity=0.175  Sum_probs=174.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHH-
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAV-   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl-   88 (276)
                      |||+|||+|.||..++..|.+.|+    +|++| +|++++.+.+.+.|+....++.++++++|+||+||| +++++.++ 
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~   80 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL   80 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHh
Confidence            699999999999999999999998    99999 999999999988898888888888899999999999 66788887 


Q ss_pred             --HHHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEE--ecCccccccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866           89 --ITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG  161 (276)
Q Consensus        89 --~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~--~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~  161 (276)
                        .++.. .+.++..+++..++.. +.+.+.+.++  +..++..  +++.+.....+.+.++.+   +++..+.+.++|+
T Consensus        81 ~~~~l~~-~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~  156 (299)
T 1vpd_A           81 GENGIIE-GAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMK  156 (299)
T ss_dssp             STTCHHH-HCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHH
T ss_pred             CcchHhh-cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCC---CHHHHHHHHHHHH
Confidence              44411 1112233333334541 2356776664  2344443  233333333344555543   6888999999999


Q ss_pred             hcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 023866          162 SVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD  237 (276)
Q Consensus       162 ~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~  237 (276)
                      .+|.. ++.++........+.  .+.+.+.++..+.|+   +.+.|++++++.+++..+..++..+..   ..|..+.+.
T Consensus       157 ~~g~~~~~~~~~~~~~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~  231 (299)
T 1vpd_A          157 AMAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAPMVMDRN  231 (299)
T ss_dssp             TTEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH---HHHHHHTTC
T ss_pred             HHcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHH---hhhHhhcCC
Confidence            99975 666665444444432  234556666777776   679999999999998877655544322   235555555


Q ss_pred             cCCCCchHHHHH-------HHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          238 VASPGGTTIAGI-------HELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       238 v~sp~g~t~~~l-------~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      + +|++..+...       +..++.|++..+.+++.+.++++.+.
T Consensus       232 ~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~  275 (299)
T 1vpd_A          232 F-KPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRAD  275 (299)
T ss_dssp             C-CCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             C-CCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            4 7777655433       34466799999999999999988764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.88  E-value=6.8e-22  Score=169.95  Aligned_cols=248  Identities=17%  Similarity=0.165  Sum_probs=168.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      |+||+|||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|||+. ++++++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~   75 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGF----DVTVW-NRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVC   75 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTC----CEEEE-CSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            4799999999999999999999999    99999 99999999998889998889999999999999999975 788888


Q ss_pred             ---HHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcc-eEeecCCCCCHHHHHHHH
Q 023866           89 ---ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIG  157 (276)
Q Consensus        89 ---~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~v~  157 (276)
                         .++.. .+.++..++.. +++ +.   ..+.+.+.  +.+++.. |.  .|.....|. +.++.+   +++.++.++
T Consensus        76 ~~~~~l~~-~l~~g~~vv~~-st~-~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~  148 (287)
T 3pdu_A           76 FGANGVLE-GIGGGRGYIDM-STV-DDETSTAIGAAVTARGGRFLEA-PVSGTKKPAEDGTLIILAAG---DQSLFTDAG  148 (287)
T ss_dssp             HSTTCGGG-TCCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEEC-CEECCHHHHHHTCEEEEEEE---CHHHHHHTH
T ss_pred             cCchhhhh-cccCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCEEEEC-CccCCHHHHhcCCEEEEEeC---CHHHHHHHH
Confidence               55510 11111222222 333 33   33444432  2344443 32  222222343 344433   688999999


Q ss_pred             HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      ++|+.+|.. +++++........+.  .+.+++..+..+.|+   +.+.|+++++..+++..+...+. +....  .+ .
T Consensus       149 ~ll~~~g~~~~~~g~~g~~~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~--~~-~  222 (287)
T 3pdu_A          149 PAFAALGKKCLHLGEVGQGARMKLV--VNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANP-MFKGK--GQ-M  222 (287)
T ss_dssp             HHHHHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH-HHHHH--HH-H
T ss_pred             HHHHHhCCCEEEcCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCh-HHHhh--cc-c
Confidence            999999975 777764333333332  244445555556665   57999999999999887653333 22221  23 3


Q ss_pred             HHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          234 LKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       234 l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +.+..+.|++......+++       ++.|++..+.+++.+.++++.+.
T Consensus       223 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  271 (287)
T 3pdu_A          223 LLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAA  271 (287)
T ss_dssp             HHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            4444457888777665553       56688889999999999988764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.88  E-value=2.6e-21  Score=167.54  Aligned_cols=249  Identities=13%  Similarity=0.127  Sum_probs=164.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      .+|||+|||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+.. +.++.+++++||+||+|||+. .++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~   80 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGL----STWGA-DLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQ   80 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHH
Confidence            35799999999999999999999999    99999 99999999999888876 788999999999999999974 6888


Q ss_pred             HH---HHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcc-eEeecCCCCCHHHHHH
Q 023866           87 AV---ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGEL  155 (276)
Q Consensus        87 vl---~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~  155 (276)
                      ++   .++.. .++++..++.. +++ +.   ..+.+.+.  +..++. +|.  .|.....|. +.++.+   +++.++.
T Consensus        81 v~~~~~~l~~-~l~~g~ivv~~-st~-~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~  153 (303)
T 3g0o_A           81 VLFGEDGVAH-LMKPGSAVMVS-STI-SSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTVMASG---SEAAFTR  153 (303)
T ss_dssp             HHC--CCCGG-GSCTTCEEEEC-SCC-CHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEEEEEC---CHHHHHH
T ss_pred             HHhChhhHHh-hCCCCCEEEec-CCC-CHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEEEeCC---CHHHHHH
Confidence            87   44410 11111112222 334 33   34444443  234444 442  222223444 344443   6889999


Q ss_pred             HHHHhhhcCce-EEcCC-CCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023866          156 IGKLFGSVGKI-WRADE-KLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKH  230 (276)
Q Consensus       156 v~~ll~~~G~~-~~~~e-~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~  230 (276)
                      ++++|+.+|.. +++++ ........+.  .+.+.+..+..+.|+   +.+.|+++++..+++..+..++..+ .+  ..
T Consensus       154 ~~~ll~~~g~~~~~~~~~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~~--~~  228 (303)
T 3g0o_A          154 LKPVLDAVASNVYRISDTPGAGSTVKII--HQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMF-EN--RM  228 (303)
T ss_dssp             HHHHHHHHEEEEEEEESSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHH-HH--HH
T ss_pred             HHHHHHHHCCCEEECCCCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHH-Hh--hh
Confidence            99999999975 67765 2222222222  233333444445554   5789999999999887754333322 21  12


Q ss_pred             hHHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          231 PGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       231 ~~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +. +.+..++|++......+++       ++.|++..+.+++.+.++++.+.
T Consensus       229 ~~-~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  279 (303)
T 3g0o_A          229 QH-VVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNA  279 (303)
T ss_dssp             HH-HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HH-HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            33 3344447887766655543       66799999999999999988763

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.87  E-value=2.8e-22  Score=173.31  Aligned_cols=251  Identities=16%  Similarity=0.157  Sum_probs=170.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~v   87 (276)
                      .+|||+|||+|.||..++..|.+.|+    +|++| +|++++.+.+.+.|+..+.++.++++++|+||+||| +++++.+
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v   77 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKEGV----TVYAF-DLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETV   77 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHH
Confidence            45899999999999999999999998    99999 999999998888888887888888899999999996 5668888


Q ss_pred             HH---HHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEEecCcccc--ccCcc-eEeecCCCCCHHHHHHHHH
Q 023866           88 VI---TEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRVMPNTPSA--VGEAA-TVMSLGGTATEEDGELIGK  158 (276)
Q Consensus        88 l~---~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~~p~~~~~--~~~g~-~~i~~~~~~~~~~~~~v~~  158 (276)
                      +.   ++.. .+.++..+++..+|.. +.+.+.+.++  +.+++. .|..+..  ...|. +.++.+   +++.++.+.+
T Consensus        78 ~~~~~~l~~-~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~  152 (301)
T 3cky_A           78 MNGPGGVLS-ACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKGAEAGTLTIMVGA---SEAVFEKIQP  152 (301)
T ss_dssp             HHSTTCHHH-HSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHHHHHTCEEEEEES---CHHHHHHHHH
T ss_pred             HcCcchHhh-cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHHH
Confidence            74   4410 1112233344335541 2356666554  234443 2321111  11243 444443   7888999999


Q ss_pred             HhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh-HH
Q 023866          159 LFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQ  233 (276)
Q Consensus       159 ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~-~~  233 (276)
                      +|+.+|.. +++++........+.  .+.+.+.+...+.|+   +.+.|++++++.+++..++.++..+...   .+ ..
T Consensus       153 ll~~~g~~~~~~~~~g~~~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  227 (301)
T 3cky_A          153 VLSVIGKDIYHVGDTGAGDAVKIV--NNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK---MEKFI  227 (301)
T ss_dssp             HHHHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHH---CCCCC
T ss_pred             HHHHhcCCEEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh---hhhhh
Confidence            99999975 566653333332221  122444445555555   6789999999999988877666555432   23 34


Q ss_pred             HHHhcCCCCchHHHH-------HHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          234 LKDDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       234 l~~~v~sp~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +.+++ +|++.++..       ++..++.|++..+.+++.+.++++.+.
T Consensus       228 l~~~~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~  275 (301)
T 3cky_A          228 MSGDF-AGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAM  275 (301)
T ss_dssp             CTCCC-SSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             hcCCC-CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence            45555 688777644       345677799999999999999998875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.87  E-value=3e-21  Score=165.92  Aligned_cols=247  Identities=18%  Similarity=0.197  Sum_probs=167.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHH-
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAV-   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl-   88 (276)
                      |||+|||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+||| ++++++++ 
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   76 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC----SVTIW-NRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCF   76 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHc
Confidence            799999999999999999999999    99999 999999999999999988899999999999999999 66888888 


Q ss_pred             --HHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCc--cccccCcc-eEeecCCCCCHHHHHHHHH
Q 023866           89 --ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNT--PSAVGEAA-TVMSLGGTATEEDGELIGK  158 (276)
Q Consensus        89 --~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~--~~~~~~g~-~~i~~~~~~~~~~~~~v~~  158 (276)
                        .++.. .+.++..++.. +++ +.   ..+.+.+.  +..++. +|..  +.....|. ..++.+   +++.++.+++
T Consensus        77 ~~~~l~~-~l~~~~~vi~~-st~-~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~  149 (287)
T 3pef_A           77 GKHGVLE-GIGEGRGYVDM-STV-DPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMP  149 (287)
T ss_dssp             STTCHHH-HCCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHH
T ss_pred             CcchHhh-cCCCCCEEEeC-CCC-CHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHH
Confidence              55421 11111222322 444 33   33444332  234443 3321  11112233 334443   6889999999


Q ss_pred             HhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866          159 LFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL  234 (276)
Q Consensus       159 ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l  234 (276)
                      +|+.+|.. +++++........+.  .+.+.+..+..+.|+   +.+.|+++++..+++..+...+. +...   ....+
T Consensus       150 ll~~~g~~~~~~g~~g~~~~~Kl~--~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~-~~~~---~~~~~  223 (287)
T 3pef_A          150 GFEKMGKKIIHLGDVGKGAEMKLV--VNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANP-MFAL---KGGLI  223 (287)
T ss_dssp             HHHHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH-HHHH---HHHHH
T ss_pred             HHHHhCCCeEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccH-HHHH---Hhhhh
Confidence            99999965 778775555555443  234444444555554   56899999999999887543332 2221   12334


Q ss_pred             HHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          235 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       235 ~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      .+..+.|++......+++       ++.|++..+.+++.+.++++.+.
T Consensus       224 ~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  271 (287)
T 3pef_A          224 RDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAA  271 (287)
T ss_dssp             HTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence            444447888766665543       45588888999999999888653

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.87  E-value=5.8e-21  Score=165.98  Aligned_cols=247  Identities=15%  Similarity=0.116  Sum_probs=163.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++|||||||+|.||.+|+.+|.++|+   .+|++| ||+  +++.+.+.+.|+..+.++.+++++||+||+|||++...+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~---~~V~~~-dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~   98 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGA---IDMAAY-DAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE   98 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSC---CEEEEE-CSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC---CeEEEE-cCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH
Confidence            46899999999999999999999986   479999 997  688888888999888889999999999999999998888


Q ss_pred             HHHHHhhccccccCCcccCCCCcccH---HHHHHHcC----CCcEEEE--ecCccccccCcceEeecCCCCCHHHHHHHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG----HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIG  157 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~----~~~vv~~--~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~  157 (276)
                      ++.++.. .++++..++.. +++ ..   ..+.+.+.    +.+++..  +...+.. ....+.++.++   ++  +.++
T Consensus        99 ~~~~l~~-~l~~~~ivvd~-st~-~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~---~~--~~~~  169 (312)
T 3qsg_A           99 VAQQAGP-HLCEGALYADF-TSC-SPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGD---GA--RRFQ  169 (312)
T ss_dssp             HHHHHGG-GCCTTCEEEEC-CCC-CHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEEST---TH--HHHH
T ss_pred             HHHhhHh-hcCCCCEEEEc-CCC-CHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCC---hH--HHHH
Confidence            8887721 11111112221 344 32   23333222    3444432  2222222 22345556553   33  8899


Q ss_pred             HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      ++|+.+|.. +++++ ......++-.+.+.|++..+..+.|+   +.+.|+++ +..+.+..+. ++..+ ..   ....
T Consensus       170 ~ll~~~g~~~~~~g~-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~-~~---~~~~  242 (312)
T 3qsg_A          170 AAFTLYGCRIEVLDG-EVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHL-RD---LALY  242 (312)
T ss_dssp             HHHHTTTCEEEECCS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTH-HH---HHHH
T ss_pred             HHHHHhCCCeEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhH-HH---hhhH
Confidence            999999976 66665 35555555556788876666666664   67899998 4666666554 22111 11   1233


Q ss_pred             HHHhcCCCCchH----HHHHHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          234 LKDDVASPGGTT----IAGIHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       234 l~~~v~sp~g~t----~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +.+..++|++..    ...++..++.|++..+.+++.+.++++.+.
T Consensus       243 ~~~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~  288 (312)
T 3qsg_A          243 LVERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQV  288 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcccchHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence            444444676663    344555677899999999999999988764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.87  E-value=2.9e-21  Score=163.91  Aligned_cols=238  Identities=14%  Similarity=0.163  Sum_probs=164.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||+|||+|+||.+|+.+|.++|+    +|++| +|  ++++.+.+.+.|+.  .++.++++++|+||+|||++...+.+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~----~V~~~-~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~   73 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA   73 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCC----eEEEe-CCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH
Confidence            589999999999999999999999    99999 99  78888888877877  67788889999999999998655445


Q ss_pred             HHHhhccccccCCcccCCCCccc---HHHHHHHcCCCcEEEE-ecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcC
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTGHSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG  164 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~~~~vv~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G  164 (276)
                      .++.. .+   .+++-..+++ +   .+.+.+.++...++.. +-..|...+.|...++.++   ++  +.+++ |+.+|
T Consensus        74 ~~~~~-~~---~~~vi~~s~~-~~~~~~~l~~~~~~~g~~~~~v~~~~~~~~~g~~~~~~g~---~~--~~~~~-l~~~g  142 (264)
T 1i36_A           74 RRAGR-HV---RGIYVDINNI-SPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR---DA--EEFMK-LNRYG  142 (264)
T ss_dssp             HHHHT-TC---CSEEEECSCC-CHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST---TH--HHHHG-GGGGT
T ss_pred             HHHHH-hc---CcEEEEccCC-CHHHHHHHHHHHhhCCeeeeeeeCCccccccCCeEEecCC---cH--HHhhh-HHHcC
Confidence            55521 11   1133222455 3   3467777764222221 1123333345555455442   22  78888 99999


Q ss_pred             ce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCC
Q 023866          165 KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS  240 (276)
Q Consensus       165 ~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~s  240 (276)
                      .. ++++++ .....++..+.+.+++.++..+.|+   +.+.|++++ +++++.+++ |...+..    .+. +.+..++
T Consensus       143 ~~~~~~~~~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~-g~~~~~~----~~~-~~~~~~~  214 (264)
T 1i36_A          143 LNIEVRGRE-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTE-GNDFRES----AIS-RLKSSCI  214 (264)
T ss_dssp             CEEEECSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTS-CSSTHHH----HHH-HHHHHHH
T ss_pred             CeeEECCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhc-CccHHHH----HHH-HhcCCCC
Confidence            76 677764 4454554455677777777778777   789999987 777777654 3222211    233 4455557


Q ss_pred             CCchHHHHH----HHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          241 PGGTTIAGI----HELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       241 p~g~t~~~l----~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      |++.+.+.+    +..++. ++..+.+++.+.++|+.++
T Consensus       215 ~g~~~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~  252 (264)
T 1i36_A          215 HARRRYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDV  252 (264)
T ss_dssp             THHHHHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-
T ss_pred             cchhhHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHc
Confidence            888777776    567788 9999999999999998765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.87  E-value=1.1e-20  Score=164.07  Aligned_cols=252  Identities=10%  Similarity=0.022  Sum_probs=161.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc------------Cchhhhc---CCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVE---YSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~---~aD   73 (276)
                      .+|||+|||+|.||++++..|.++|+    +|++| +|++++.+.+.+.|+....            +..++.+   ++|
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGN----DVTLI-DQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD   76 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence            35899999999999999999999999    99999 9999999988876654321            3334444   899


Q ss_pred             EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-HHHHHHcCCCcEE---------EEecCccccccCcceEee
Q 023866           74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-SRWVEWTGHSRFI---------RVMPNTPSAVGEAATVMS  143 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~~l~~~~vv---------~~~p~~~~~~~~g~~~i~  143 (276)
                      +||+|||++.+.+++.++.. .+.++..+++..+|+ +. +.+++.++..+++         +..|+.+...+.|.+.+.
T Consensus        77 ~vi~~v~~~~~~~v~~~l~~-~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~  154 (316)
T 2ew2_A           77 LIIALTKAQQLDAMFKAIQP-MITEKTYVLCLLNGL-GHEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELE  154 (316)
T ss_dssp             EEEECSCHHHHHHHHHHHGG-GCCTTCEEEECCSSS-CTHHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEE
T ss_pred             EEEEEeccccHHHHHHHHHH-hcCCCCEEEEecCCC-CcHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEe
Confidence            99999999999999988821 111112233333777 54 6677777644555         345666666666766555


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCceEEcCCCC-------------chhhhhhcCchHHHHH-------HHHHHHHHH---HH
Q 023866          144 LGGTATEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPAYIF-------LAIEALADG---GV  200 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~-------------~~~~~a~~g~~p~~~~-------~~~~~l~~~---~~  200 (276)
                      ...+.+++..+.+.++|+.+|..++..++.             ++.++++.++.|++++       .+...+.|.   +.
T Consensus       155 ~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~  234 (316)
T 2ew2_A          155 NIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAE  234 (316)
T ss_dssp             ESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            444456888999999999999765555553             6778999999888753       233444443   46


Q ss_pred             HcCCCH--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH------HHHHHHHhCChHHHHHHHHHHHHHHH
Q 023866          201 AAGLPR--ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI------AGIHELEKSGFRGILMNAVVAAAKRS  272 (276)
Q Consensus       201 ~~Gl~~--~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~------~~l~~l~~~~~~~~~~~a~~~~~~r~  272 (276)
                      +.|++.  +...+++.......   .. ....+.++.| +..++..|+      ..++.-++.|++..+.+++.+.++..
T Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~---~~-~~~~~sm~~d-~~~~g~~~E~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~  309 (316)
T 2ew2_A          235 KEAIYLDQAEVYTHIVQTYDPN---GI-GLHYPSMYQD-LIKNHRLTEIDYINGAVWRKGQKYNVATPFCAMLTQLVHGK  309 (316)
T ss_dssp             HTTCCCCHHHHHHHHHHTTCTT---TT-TTSCCHHHHH-HTTTCCCCSGGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             HcCCCCChHHHHHHHHHHhccc---cC-CCCCcHHHHH-HHHcCCcchHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            789886  33444443211000   00 0112233332 201222222      33444566688888888877766544

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.87  E-value=2.6e-21  Score=164.45  Aligned_cols=201  Identities=14%  Similarity=0.180  Sum_probs=150.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      .+|||+|||+|.||..++..|.+.|+    + |.+| +|++++.+.+.+ .|+..+.+..++++++|+||+|||++.+.+
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~----~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~   83 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGF----RIVQVY-SRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAE   83 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTC----CEEEEE-CSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC----eEEEEE-eCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHH
Confidence            35799999999999999999999998    7 8899 999999988877 488887888888899999999999998899


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCcccc-----ccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSA-----VGEAATVMSLGGTATEEDGELIGKLFG  161 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~-----~~~g~~~i~~~~~~~~~~~~~v~~ll~  161 (276)
                      ++.++.. .+.++..+++..+|+ +.+.+++.++..  -..+|..|..     ...+...+..  +.+++..+.++++|+
T Consensus        84 v~~~l~~-~~~~~~ivv~~s~~~-~~~~l~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~  157 (266)
T 3d1l_A           84 LLQGIVE-GKREEALMVHTAGSI-PMNVWEGHVPHY--GVFYPMQTFSKQREVDFKEIPFFIE--ASSTEDAAFLKAIAS  157 (266)
T ss_dssp             HHHHHHT-TCCTTCEEEECCTTS-CGGGSTTTCSSE--EEEEECCCC---CCCCCTTCCEEEE--ESSHHHHHHHHHHHH
T ss_pred             HHHHHHh-hcCCCcEEEECCCCC-chHHHHHHHHhc--cCcCCceecCCCchhhcCCCeEEEe--cCCHHHHHHHHHHHH
Confidence            9988731 111222333444677 666666665531  1234433311     1122222331  247888999999999


Q ss_pred             hcCc-eEEcCCCC---chhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 023866          162 SVGK-IWRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM  223 (276)
Q Consensus       162 ~~G~-~~~~~e~~---~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~  223 (276)
                      .+|. +++++++.   +|..++++++++++++.+.+++.   .+.|++++++.+++.+++.++.++
T Consensus       158 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~---~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          158 TLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL---KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             TTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             hcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            9995 57787664   78888888888888777777654   589999999999999999888765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.86  E-value=7.5e-21  Score=165.85  Aligned_cols=247  Identities=13%  Similarity=0.143  Sum_probs=166.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~v   87 (276)
                      ++|||+|||+|.||.+|+..|.++|+    +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|||. +.++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v  104 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY----ALQVW-NRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDV  104 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence            56899999999999999999999999    99999 9999999999888999888999999999999999995 578888


Q ss_pred             HH--HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCcc--ccccCcc-eEeecCCCCCHHHHHHHH
Q 023866           88 VI--TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNTP--SAVGEAA-TVMSLGGTATEEDGELIG  157 (276)
Q Consensus        88 l~--~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~~--~~~~~g~-~~i~~~~~~~~~~~~~v~  157 (276)
                      +.  ++.. .+.++..++.. +++ +.   +.+.+.+.  +..++.. |...  .....|. +.++.+   +++.++.++
T Consensus       105 ~~~~~~~~-~l~~~~~vi~~-st~-~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~  177 (320)
T 4dll_A          105 LFAQGVAA-AMKPGSLFLDM-ASI-TPREARDHAARLGALGIAHLDT-PVSGGTVGAEQGTLVIMAGG---KPADFERSL  177 (320)
T ss_dssp             HTTTCHHH-HCCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEEC-CEECHHHHHHHTCEEEEEES---CHHHHHHHH
T ss_pred             HcchhHHh-hCCCCCEEEec-CCC-CHHHHHHHHHHHHHcCCEEEeC-CCcCCHhHHhcCCeeEEeCC---CHHHHHHHH
Confidence            75  4411 11111222332 333 33   34444432  3344432 3211  1112233 344443   788999999


Q ss_pred             HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866          158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ  233 (276)
Q Consensus       158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~  233 (276)
                      ++|+.+ .. +++++......+.+.  .+.+.+..+..+.|+   +.+.|+++++..+++..+...+. ++..  ..+ .
T Consensus       178 ~ll~~~-~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~-~~~~--~~~-~  250 (320)
T 4dll_A          178 PLLKVF-GRATHVGPHGSGQLTKLA--NQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSR-VLQL--HGQ-R  250 (320)
T ss_dssp             HHHHHH-EEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBH-HHHT--HHH-H
T ss_pred             HHHHhc-CCEEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCH-HHHH--hhh-h
Confidence            999999 64 677764333333332  244555555556665   56899999999998876643332 2221  123 3


Q ss_pred             HHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866          234 LKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       234 l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      +.+..+.|++......+++       ++.|++..+.+++.+.|+++.+
T Consensus       251 ~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  298 (320)
T 4dll_A          251 MVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVE  298 (320)
T ss_dssp             HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             hccCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence            4444447888776666654       5678888999999999988765

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.85  E-value=3.8e-21  Score=165.82  Aligned_cols=244  Identities=17%  Similarity=0.163  Sum_probs=161.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl~   89 (276)
                      |||+|||+|.||.+++.+|.+.|+    +|++| +|++++.+.+.+.|+..+.++.++++++|+||+||| ++++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~   75 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGY----PLIIY-DVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYS   75 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHh
Confidence            589999999999999999999998    99999 999999999988898888888888899999999995 668888887


Q ss_pred             HHhh--ccccccCCcccCCCCcccHHHHH---HHcCCCcEEEEecCcccccc-----CcceEeecCCCCCHHHHHHHHHH
Q 023866           90 TEEA--FGFCCCRSEIERPSGLQRWSRWV---EWTGHSRFIRVMPNTPSAVG-----EAATVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        90 ~~~~--~~~~~~~~~l~~~~g~~~~~~l~---~~l~~~~vv~~~p~~~~~~~-----~g~~~i~~~~~~~~~~~~~v~~l  159 (276)
                      ++..  ..+.++..+++ .+|+ +.+..+   +.++..  .+.+|+.|...+     .+...++.+  .+++..+.++++
T Consensus        76 ~~~~~~~~l~~~~~vv~-~s~~-~~~~~~~~~~~~~~~--g~~~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l  149 (296)
T 2gf2_A           76 GANGILKKVKKGSLLID-SSTI-DPAVSKELAKEVEKM--GAVFMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQEL  149 (296)
T ss_dssp             STTSGGGTCCTTCEEEE-CSCC-CHHHHHHHHHHHHHT--TCEEEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHH
T ss_pred             CchhHHhcCCCCCEEEE-CCCC-CHHHHHHHHHHHHHc--CCEEEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHH
Confidence            6410  01122233344 4777 664443   333311  123455565443     344344433  368899999999


Q ss_pred             hhhcCce-EEcCCCCchhhhhhcCchHHH------H-HHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 023866          160 FGSVGKI-WRADEKLFDAITGLSGSGPAY------I-FLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       160 l~~~G~~-~~~~e~~~~~~~a~~g~~p~~------~-~~~~~~l~~---~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      |+.+|.. ++++.         .|+++++      + +.....+.|   .+.+.|++++++.+++..+ .+...++...+
T Consensus       150 ~~~~g~~~~~~~~---------~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~  219 (296)
T 2gf2_A          150 LGCMGSNVVYCGA---------VGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMS-SGRCWSSDTYN  219 (296)
T ss_dssp             HTTTEEEEEEEES---------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS-TTCBHHHHHSC
T ss_pred             HHHHcCCeEEeCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhC-cccCHHHHhcC
Confidence            9999975 55554         2344433      2 222223333   4679999999998887753 23334443333


Q ss_pred             CChHHHH----HhcCCCCchHHH-------HHHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866          229 KHPGQLK----DDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       229 ~~~~~l~----~~v~sp~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      ..|..+.    ..-..+++..+.       .++..++.|++..+.+++.+.++++.+.
T Consensus       220 ~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~  277 (296)
T 2gf2_A          220 PVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAK  277 (296)
T ss_dssp             SSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             CcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence            3343332    122345544432       3445567799999999999999888653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.85  E-value=7.5e-21  Score=164.13  Aligned_cols=244  Identities=15%  Similarity=0.072  Sum_probs=160.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl   88 (276)
                      ++||+|||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.++++ ||+||+||| ++++++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~   88 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG----GVTVY-DIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV   88 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT----CEEEE-CSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH
Confidence            5799999999999999999999999    99999 99999999999999998889999988 999999999 45788888


Q ss_pred             HHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcc-eEeecCCCCCHHHHHHHHHHh
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKLF  160 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll  160 (276)
                      .++.. .++++..++.. +++ +.   +.+.+.+.  +..++.. |.  .+.....|. +.++.+   +++.++.++++|
T Consensus        89 ~~l~~-~l~~g~ivv~~-st~-~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll  161 (296)
T 3qha_A           89 GELAG-HAKPGTVIAIH-STI-SDTTAVELARDLKARDIHIVDA-PVSGGAAAAARGELATMVGA---DREVYERIKPAF  161 (296)
T ss_dssp             HHHHT-TCCTTCEEEEC-SCC-CHHHHHHHHHHHGGGTCEEEEC-CEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHH
T ss_pred             HHHHH-hcCCCCEEEEe-CCC-CHHHHHHHHHHHHHcCCEEEeC-CCcCCHHHHhcCCccEEecC---CHHHHHHHHHHH
Confidence            87721 11111122222 333 33   34555443  2334432 21  111122333 344443   688999999999


Q ss_pred             hhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHH------HHHHHHHHHHHHHHHHhcCCC
Q 023866          161 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELA------LGLASQTVLGAASMVTKSGKH  230 (276)
Q Consensus       161 ~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a------~~~~~~~~~g~~~~~~~~~~~  230 (276)
                      +.+|.. +++++........+.  .+.+.+..+..+.|.   +.+.|+++++.      .+++..+..++  ...+   .
T Consensus       162 ~~~g~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s--~~~~---~  234 (296)
T 3qha_A          162 KHWAAVVIHAGEPGAGTRMKLA--RNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAI--MVRD---N  234 (296)
T ss_dssp             HHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGG--CCCS---S
T ss_pred             HHHcCCeEEcCChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccC--HHhh---c
Confidence            999965 777663333333332  244555555556565   57999999998      66665443332  1111   2


Q ss_pred             hHHHHHhcCCCCchH-----HHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866          231 PGQLKDDVASPGGTT-----IAGIHEL-------EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       231 ~~~l~~~v~sp~g~t-----~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +..+..  +.|++..     ....+++       ++.+++-.+.+++.+.|+++.+.
T Consensus       235 ~~~~~~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  289 (296)
T 3qha_A          235 MKDLEP--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGV  289 (296)
T ss_dssp             CSCCCT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTC
T ss_pred             hhhhhc--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence            222323  4677766     4454443       45688888888888888877653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.83  E-value=3.6e-20  Score=153.12  Aligned_cols=154  Identities=13%  Similarity=0.157  Sum_probs=120.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEE-EeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT-AVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      |++|||+|||+|+||.+++..|.++|+    +|++ | +|++++++.+.+ .|+....+..+.++++|+||+|||++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~----~V~~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~   95 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQI----PAIIAN-SRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIA   95 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTC----CEEEEC-TTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCC----EEEEEE-CCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHH
Confidence            567899999999999999999999998    9998 8 999999988766 67766667777789999999999999999


Q ss_pred             HHHHHHhhccccccCCcccCCCCcc-------------cHHHHHHHcCCCcEEEEecCccccccC-c-------ceEeec
Q 023866           86 AAVITEEAFGFCCCRSEIERPSGLQ-------------RWSRWVEWTGHSRFIRVMPNTPSAVGE-A-------ATVMSL  144 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~~g~~-------------~~~~l~~~l~~~~vv~~~p~~~~~~~~-g-------~~~i~~  144 (276)
                      +++.++.  .+ +++.+++..+|+.             +.+.+++.+++.++++++|+.|..+.. +       ...++.
T Consensus        96 ~v~~~l~--~~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~  172 (220)
T 4huj_A           96 DIVTQVS--DW-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLS  172 (220)
T ss_dssp             HHHTTCS--CC-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEE
T ss_pred             HHHHHhh--cc-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEe
Confidence            9998872  11 1123333335551             467889999888999999998876544 2       233343


Q ss_pred             CCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          145 GGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       145 ~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      +  .+++..+.++++|+.+|.. +..++
T Consensus       173 g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          173 G--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             E--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             C--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            3  3689999999999999976 66765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.83  E-value=8.9e-20  Score=158.57  Aligned_cols=242  Identities=14%  Similarity=0.072  Sum_probs=154.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhC-----C-CCCCCeEEEEeCCCHHHHHHHHH-cCceecc-------------Cchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKS-----G-VLPPDRICTAVHSNLKRRDAFES-IGVKVLS-------------DNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~-----g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~   70 (276)
                      |||+|||+|.||++|+..|.++     | +    +|++| +| +++.+.+.+ .|+.+..             +..+.+.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~----~V~~~-~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   82 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL----EVSWI-AR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVG   82 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSE----EEEEE-CC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCC----CEEEE-Ec-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccC
Confidence            6999999999999999999998     8 8    99999 99 888999988 7876543             4445678


Q ss_pred             CCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-HHHHHHcCCCcEEEEecCccccc---------cCcce
Q 023866           71 YSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-SRWVEWTGHSRFIRVMPNTPSAV---------GEAAT  140 (276)
Q Consensus        71 ~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~~l~~~~vv~~~p~~~~~~---------~~g~~  140 (276)
                      ++|+||+|||++++.+++.++.. .+.++..++...+|+ .. +.+++.++..++++.+++.++..         +.|..
T Consensus        83 ~~D~vil~vk~~~~~~v~~~i~~-~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~  160 (317)
T 2qyt_A           83 TVDYILFCTKDYDMERGVAEIRP-MIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL  160 (317)
T ss_dssp             CEEEEEECCSSSCHHHHHHHHGG-GEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEecCcccHHHHHHHHHh-hcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence            99999999999999999988821 111112333434788 55 67888887656777776655433         23333


Q ss_pred             E-eecC-CCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHHH-----HHHHHHHHH--
Q 023866          141 V-MSLG-GTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYIF-----LAIEALADG--  198 (276)
Q Consensus       141 ~-i~~~-~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~~-----~~~~~l~~~--  198 (276)
                      . +... ++.+++.. .+.++|+..|..++..++             .++.++++.++.++++.     .+...+.|.  
T Consensus       161 ~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~  239 (317)
T 2qyt_A          161 FYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAE  239 (317)
T ss_dssp             EEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3 3222 33456777 899999999976555566             56778999999998874     233344443  


Q ss_pred             -HHHcCCCHH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCch------HHHHHHHHHhCChHHHHHHHHHHHH
Q 023866          199 -GVAAGLPRE--LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT------TIAGIHELEKSGFRGILMNAVVAAA  269 (276)
Q Consensus       199 -~~~~Gl~~~--~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~------t~~~l~~l~~~~~~~~~~~a~~~~~  269 (276)
                       +.+.|++.+  ...+++.....    ...  ...+.++. ++ .++..      +...++.-++.|+...+.+++.+.+
T Consensus       240 v~~a~G~~~~~~~~~~~~~~~~~----~~~--~~~~sm~~-d~-~~g~~~E~~~~~g~~~~~a~~~gv~~P~~~~~~~~~  311 (317)
T 2qyt_A          240 LFRAKYGQVPDDVVQQLLDKQRK----MPP--ESTSSMHS-DF-LQGGSTEVETLTGYVVREAEALRVDLPMYKRMYREL  311 (317)
T ss_dssp             HHHHHTSCCCSSHHHHHHHHHHH----C------------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred             HHHHcCCCCChHHHHHHHHHHhc----cCC--CCCChHHH-HH-HcCCccCHHHHhhHHHHHHHHcCCCCCHHHHHHHHH
Confidence             468898753  45555543221    111  01122222 22 12222      2244455566788777777766544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.83  E-value=3.3e-19  Score=156.47  Aligned_cols=249  Identities=15%  Similarity=0.140  Sum_probs=156.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-----------ceeccCchhhhcCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----------VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~aDvI~la   78 (276)
                      .|||+|||+|+||++|+.+|.++|+    +|++| +|++++++.+.+.|           +..++++.+ ++++|+||+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~   87 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGE----EVILW-ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIA   87 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEE
Confidence            4899999999999999999999999    99999 99999999988765           466677777 8899999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCCCCcccH---HHHH----HHcCCCcEEEEecCccccccCcc-eEeecCCCCCH
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWV----EWTGHSRFIRVMPNTPSAVGEAA-TVMSLGGTATE  150 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~----~~l~~~~vv~~~p~~~~~~~~g~-~~i~~~~~~~~  150 (276)
                      ||++++++++.++.  .  ++..+++..+|+ +.   +.+.    +.++....++.+|+.+..++.|. +.++.+.  . 
T Consensus        88 vk~~~~~~v~~~l~--~--~~~~vv~~~nGi-~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~--~-  159 (335)
T 1z82_A           88 IPVQYIREHLLRLP--V--KPSMVLNLSKGI-EIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAG--E-  159 (335)
T ss_dssp             SCGGGHHHHHTTCS--S--CCSEEEECCCCC-CTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEE--T-
T ss_pred             CCHHHHHHHHHHhC--c--CCCEEEEEeCCC-CCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEe--h-
Confidence            99999999998772  1  223445444676 33   2232    33331246788999988776664 3333332  1 


Q ss_pred             HHHHHHHHHhhhcCceEEcCCCCc---------hh----hhhhcC--chH-H---HHHHHHHHHHHHHHHcCCCHHHHHH
Q 023866          151 EDGELIGKLFGSVGKIWRADEKLF---------DA----ITGLSG--SGP-A---YIFLAIEALADGGVAAGLPRELALG  211 (276)
Q Consensus       151 ~~~~~v~~ll~~~G~~~~~~e~~~---------~~----~~a~~g--~~p-~---~~~~~~~~l~~~~~~~Gl~~~~a~~  211 (276)
                      + .+.+.++|+..|..++..++..         +.    ..+..+  .++ .   ++...+..+...+.+.|++++.+.+
T Consensus       160 ~-~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~  238 (335)
T 1z82_A          160 N-SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG  238 (335)
T ss_dssp             T-HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             h-HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence            2 7889999999997655555432         11    111111  122 2   2223333444456799999987654


Q ss_pred             HH--HH---HHHH-------HHHHHHhcCCChHHHHHhcCCCC--chHHHH-HHHHHhCChHHHHHHHHHHHHHHHhh
Q 023866          212 LA--SQ---TVLG-------AASMVTKSGKHPGQLKDDVASPG--GTTIAG-IHELEKSGFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       212 ~~--~~---~~~g-------~~~~~~~~~~~~~~l~~~v~sp~--g~t~~~-l~~l~~~~~~~~~~~a~~~~~~r~~~  274 (276)
                      +.  ..   +..+       ..+.+. .+.+++++.+.+.+.-  -.+... ++..++.|++..+.+++.+.+++.++
T Consensus       239 l~~~~~~~~t~~s~~~~n~~~~~~~~-~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~~~~  315 (335)
T 1z82_A          239 LAGIGDLMVTCNSRYSRNRRFGELIA-RGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKP  315 (335)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHH-HTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCC
T ss_pred             cccccceeeeccCccCcHHHHHHHHh-CCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCC
Confidence            31  00   1110       112222 2445555554432111  122222 33347789999999998888876654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.82  E-value=1.6e-18  Score=148.55  Aligned_cols=209  Identities=16%  Similarity=0.045  Sum_probs=144.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----------C--------------ceec
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----------G--------------VKVL   62 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----------g--------------~~~~   62 (276)
                      |+++||+|||+|.||++||..|.++|+    +|++| ||++++++.+.+.           |              +..+
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~   76 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGF----AVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS   76 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence            467899999999999999999999999    99999 9999988766542           2              3556


Q ss_pred             cCchhhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           63 SDNNAVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        63 ~~~~~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      .+..+++++||+||+|||++  ...+++.++.. ...++.-+++..+++ +++.+.+.+. ..++++.||..|...+..+
T Consensus        77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~-~~~~~~il~s~tS~~-~~~~la~~~~~~~~~ig~h~~~p~~~~~lv  154 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGE-LAPAKTIFATNSSTL-LPSDLVGYTGRGDKFLALHFANHVWVNNTA  154 (283)
T ss_dssp             SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEECCSSS-CHHHHHHHHSCGGGEEEEEECSSTTTSCEE
T ss_pred             CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHh-hCCCCcEEEECCCCC-CHHHHHhhcCCCcceEEEccCCCcccCceE
Confidence            67778889999999999987  56777777631 111112223444777 8888888775 3689999999888766655


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL  218 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~  218 (276)
                       .++++..++++.++.+.++++.+|+. ++++.+....+..     ..+...+.+++ ....+.+.++++..+++...+.
T Consensus       155 -evv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~n-----r~~~~~~~ea~-~l~~~g~~~~~~id~~~~~~~g  227 (283)
T 4e12_A          155 -EVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLN-----SLLVPLLDAAA-ELLVDGIADPETIDKTWRIGTG  227 (283)
T ss_dssp             -EEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHH-----HHHHHHHHHHH-HHHHTTSCCHHHHHHHHHHHHC
T ss_pred             -EEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEeh-----HHHHHHHHHHH-HHHHhCCCCHHHHHHHHHhccC
Confidence             45667778899999999999999976 7775443322110     11111222222 2234556799988777654431


Q ss_pred             HHHHHHHhcCCChHHHHHhc
Q 023866          219 GAASMVTKSGKHPGQLKDDV  238 (276)
Q Consensus       219 g~~~~~~~~~~~~~~l~~~v  238 (276)
                       .       -..|-++.|.+
T Consensus       228 -~-------~~Gp~~~~D~~  239 (283)
T 4e12_A          228 -A-------PKGPFEIFDIV  239 (283)
T ss_dssp             -C-------SSCHHHHHHHH
T ss_pred             -C-------CcCHHHHHHhc
Confidence             1       13566666655

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.82  E-value=2.7e-18  Score=151.46  Aligned_cols=252  Identities=14%  Similarity=0.097  Sum_probs=160.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC--------------ceeccCchhhhcCCCE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDv   74 (276)
                      .+|||+|||+|.||++++..|.++|+    +|++| +|++++++.+.+.+              +..++++.++++++|+
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~----~V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv  102 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQ----KVRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD  102 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence            46899999999999999999999999    99999 99999998887643              3455677788999999


Q ss_pred             EEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH------HHHHHHcCCCc-EEEEecCccccccCcc-eEeecCC
Q 023866           75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW------SRWVEWTGHSR-FIRVMPNTPSAVGEAA-TVMSLGG  146 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~------~~l~~~l~~~~-vv~~~p~~~~~~~~g~-~~i~~~~  146 (276)
                      ||+|||++.+++++.++.. .+.++..+++..+|+ ..      +.+++.++..+ .+...|+++..+..+. +.++.+ 
T Consensus       103 VilaVp~~~~~~vl~~i~~-~l~~~~ivvs~~kGi-~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via-  179 (356)
T 3k96_A          103 ILIVVPSFAFHEVITRMKP-LIDAKTRIAWGTKGL-AKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLA-  179 (356)
T ss_dssp             EEECCCHHHHHHHHHHHGG-GCCTTCEEEECCCSC-BTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEE-
T ss_pred             EEECCCHHHHHHHHHHHHH-hcCCCCEEEEEeCCC-CcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEe-
Confidence            9999999999999999821 111112233333677 44      45777777433 4566788887765553 222222 


Q ss_pred             CCCHHHHHHHHHHhhhcCceEEcCCCCch--------hhhhh-cC-------chHHHHHHHHHHHHHH---HHHcCCCHH
Q 023866          147 TATEEDGELIGKLFGSVGKIWRADEKLFD--------AITGL-SG-------SGPAYIFLAIEALADG---GVAAGLPRE  207 (276)
Q Consensus       147 ~~~~~~~~~v~~ll~~~G~~~~~~e~~~~--------~~~a~-~g-------~~p~~~~~~~~~l~~~---~~~~Gl~~~  207 (276)
                      ..+++..+.++++|+..|..++.+++...        .+.++ +|       ..+...+.+..++.|.   +.+.|.+++
T Consensus       180 ~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~  259 (356)
T 3k96_A          180 SNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQE  259 (356)
T ss_dssp             ESCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            13788899999999998877666555321        11111 11       1123344445555554   578999998


Q ss_pred             HHHH------HHHHHHHH------HHHHHHhcCCChHHHHHhc-CCCCc-hHHHHHHH-HHhCChHHHHHHHHHHHH
Q 023866          208 LALG------LASQTVLG------AASMVTKSGKHPGQLKDDV-ASPGG-TTIAGIHE-LEKSGFRGILMNAVVAAA  269 (276)
Q Consensus       208 ~a~~------~~~~~~~g------~~~~~~~~~~~~~~l~~~v-~sp~g-~t~~~l~~-l~~~~~~~~~~~a~~~~~  269 (276)
                      ++..      ++......      ....+ ..|.++++..+.. ....| .|...+.. .++.++.-.|.+++.+.+
T Consensus       260 t~~gl~g~gDl~~tc~s~~sRN~~~G~~l-~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il  335 (356)
T 3k96_A          260 TLTGLAGLGDLVLTCTDNQSRNRRFGLAL-GEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRIL  335 (356)
T ss_dssp             HHTSTTTHHHHHHHHHCTTCHHHHHHHHH-HHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hhcccchhhHHHHhccCCCCccHHHHHHH-HCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            8763      22211110      01111 2345666554443 22223 34444444 456688888888777655

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.81  E-value=6.4e-18  Score=146.11  Aligned_cols=191  Identities=13%  Similarity=0.041  Sum_probs=131.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c------------------Cc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------------GV   59 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------------g~   59 (276)
                      +++||+|||+|.||.+||..|.++|+    +|++| ||++++++.+.+           .                  ++
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i   88 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI   88 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhce
Confidence            46789999999999999999999999    99999 999988765421           2                  24


Q ss_pred             eeccCchhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccccc
Q 023866           60 KVLSDNNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVG  136 (276)
Q Consensus        60 ~~~~~~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~  136 (276)
                      ..+++..+++++||+||+|||++.  ..+++.++.. .+.++.-+++..+|+ ++..+.+.++ ..++++.||+.|...+
T Consensus        89 ~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~-~~~~~~iv~s~ts~i-~~~~l~~~~~~~~~~~g~h~~~P~~~~  166 (302)
T 1f0y_A           89 ATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDK-FAAEHTIFASNTSSL-QITSIANATTRQDRFAGLHFFNPVPVM  166 (302)
T ss_dssp             EEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTT-TSCTTCEEEECCSSS-CHHHHHTTSSCGGGEEEEEECSSTTTC
T ss_pred             EEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEECCCCC-CHHHHHHhcCCcccEEEEecCCCcccC
Confidence            456677768899999999998763  4577777721 111111122334778 8888887765 2579999999888766


Q ss_pred             CcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866          137 EAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       137 ~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                      ..+. ++.++..+++.++.+.++++.+|+. +++.+.  ....     .+.++..++......+.+.|+++++...++.
T Consensus       167 ~~~~-i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~--~g~i-----~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~  237 (302)
T 1f0y_A          167 KLVE-VIKTPMTSQKTFESLVDFSKALGKHPVSCKDT--PGFI-----VNRLLVPYLMEAIRLYERGDASKEDIDTAMK  237 (302)
T ss_dssp             CEEE-EECCTTCCHHHHHHHHHHHHHTTCEEEEECSC--TTTT-----HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ceEE-EeCCCCCCHHHHHHHHHHHHHcCCceEEecCc--cccc-----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            6554 5667778999999999999999975 666542  1110     1122222222222234456688888766554

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.80  E-value=2.4e-18  Score=157.42  Aligned_cols=194  Identities=12%  Similarity=0.073  Sum_probs=134.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----CceeccCchhhhcC---CCEEEEeeC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDvI~lav~   80 (276)
                      |.+++|||||+|.||++|+.+|.++|+    +|++| ||++++++.+.+.    |+..+.++.+++++   +|+||++||
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp   87 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGY----TVSIF-NRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVK   87 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSC
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECC
Confidence            567899999999999999999999999    99999 9999999988874    78888888888877   999999999


Q ss_pred             c-ccHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHH
Q 023866           81 P-QVDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDG  153 (276)
Q Consensus        81 ~-~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~  153 (276)
                      + +.+++++.++.. .+.++..+++..+|. ..  ..+.+.++  +..++. +|.  .|.....|.++++.+   +++.+
T Consensus        88 ~~~~v~~vl~~l~~-~l~~g~iIId~s~g~-~~~t~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~  161 (480)
T 2zyd_A           88 AGAGTDAAIDSLKP-YLDKGDIIIDGGNTF-FQDTIRRNRELSAEGFNFIG-TGVSGGEEGALKGPSIMPGG---QKEAY  161 (480)
T ss_dssp             SSSHHHHHHHHHGG-GCCTTCEEEECSCCC-HHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEES---CHHHH
T ss_pred             CHHHHHHHHHHHHh-hcCCCCEEEECCCCC-HHHHHHHHHHHHHCCCCeeC-CccccCHhHHhcCCeEEecC---CHHHH
Confidence            8 579999988821 111112233333554 32  34555553  344443 343  232234555555543   68899


Q ss_pred             HHHHHHhhhcCce--------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 023866          154 ELIGKLFGSVGKI--------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS  214 (276)
Q Consensus       154 ~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~  214 (276)
                      +.++++|+.+|..        .++++........+.  .+.+.+.+++++.|+   +.+ .|++++++.+++.
T Consensus       162 ~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~--~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~  232 (480)
T 2zyd_A          162 ELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMV--HNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFT  232 (480)
T ss_dssp             HHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCceEEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            9999999999964        445553322232222  233456677888887   567 6999999988874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.80  E-value=3.8e-18  Score=150.46  Aligned_cols=200  Identities=14%  Similarity=0.118  Sum_probs=132.1

Q ss_pred             CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCC---CEEEEee
Q 023866            3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS---DVVVFSV   79 (276)
Q Consensus         3 ~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a---DvI~lav   79 (276)
                      +-|.+|++|||||||+|.||.+|+.+|.++|+    +|++| ||++++.+.+.+.|+..+.++.++++++   |+||+||
T Consensus        15 ~~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~v   89 (358)
T 4e21_A           15 TENLYFQSMQIGMIGLGRMGADMVRRLRKGGH----ECVVY-DLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMV   89 (358)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECS
T ss_pred             cchhhhcCCEEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeC
Confidence            34666788999999999999999999999999    99999 9999999999988998888899998888   9999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHH
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEED  152 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~  152 (276)
                      |+..+++++.++.. .+.++..++.. +++ ..   ..+.+.+.  +..++.+ |.  .+.....|.++++.+   +++.
T Consensus        90 p~~~v~~vl~~l~~-~l~~g~iiId~-st~-~~~~~~~~~~~l~~~g~~~vda-pVsGg~~~a~~G~~im~GG---~~~a  162 (358)
T 4e21_A           90 PAAVVDSMLQRMTP-LLAANDIVIDG-GNS-HYQDDIRRADQMRAQGITYVDV-GTSGGIFGLERGYCLMIGG---EKQA  162 (358)
T ss_dssp             CGGGHHHHHHHHGG-GCCTTCEEEEC-SSC-CHHHHHHHHHHHHTTTCEEEEE-EEECGGGHHHHCCEEEEES---CHHH
T ss_pred             CHHHHHHHHHHHHh-hCCCCCEEEeC-CCC-ChHHHHHHHHHHHHCCCEEEeC-CCCCCHHHHhcCCeeeecC---CHHH
Confidence            99999999988721 11111122222 333 22   33444442  3444443 21  122222345555544   7899


Q ss_pred             HHHHHHHhhhcC--------------------c-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHc------
Q 023866          153 GELIGKLFGSVG--------------------K-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA------  202 (276)
Q Consensus       153 ~~~v~~ll~~~G--------------------~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~------  202 (276)
                      ++.++++|+.+|                    . .+++++..-..++.+.  .+.+++..+.++.|+   +.+.      
T Consensus       163 ~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~i~~~aE~~~la~~a~~~~~~  240 (358)
T 4e21_A          163 VERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMV--HNGIEYGLMAAYAEGLNILHHANAGKEG  240 (358)
T ss_dssp             HHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTTCC---
T ss_pred             HHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999999999                    3 3667764333333332  234455556666665   2355      


Q ss_pred             ------------------CCCHHHHHHHHHHH
Q 023866          203 ------------------GLPRELALGLASQT  216 (276)
Q Consensus       203 ------------------Gl~~~~a~~~~~~~  216 (276)
                                        |++.++..+....+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g  272 (358)
T 4e21_A          241 QGADAETAPLRNPDFYRYDLDLADITEVWRRG  272 (358)
T ss_dssp             -----------CGGGCCCCCCHHHHHHHHTTT
T ss_pred             ccccccccccccchhcccCCCHHHHHHHHhCc
Confidence                              88998888776543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.78  E-value=4.8e-17  Score=139.28  Aligned_cols=185  Identities=17%  Similarity=0.103  Sum_probs=133.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-------CceeccCchhhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      .+||||||+|.||.+||..|+ +|+    +|++| ||++++++.+.+.       +++.+++..+ +++||+||.|+|..
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~----~V~v~-d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~   84 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKH----EVVLQ-DVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFED   84 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCC----EEEEE-ECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCC
Confidence            589999999999999999999 999    99999 9999999988776       7777778876 89999999999866


Q ss_pred             -cHH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHH
Q 023866           83 -VDK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGK  158 (276)
Q Consensus        83 -~~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~  158 (276)
                       +++ .++.++.  .. + ..++ +..+++ ++..+++.+. ..+++..|+..|...+. ..-++.++.++++.++.+.+
T Consensus        85 ~~vk~~l~~~l~--~~-~-~~IlasntSti-~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~-lveiv~g~~t~~~~~~~~~~  158 (293)
T 1zej_A           85 LNTKVEVLREVE--RL-T-NAPLCSNTSVI-SVDDIAERLDSPSRFLGVHWMNPPHVMP-LVEIVISRFTDSKTVAFVEG  158 (293)
T ss_dssp             HHHHHHHHHHHH--TT-C-CSCEEECCSSS-CHHHHHTTSSCGGGEEEEEECSSTTTCC-EEEEEECTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--cC-C-CCEEEEECCCc-CHHHHHHHhhcccceEeEEecCccccCC-EEEEECCCCCCHHHHHHHHH
Confidence             455 4445552  22 2 2334 444677 8888887664 24688888877776544 33456677789999999999


Q ss_pred             HhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 023866          159 LFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV  217 (276)
Q Consensus       159 ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~  217 (276)
                      +++.+|+. +++++.    +..    ...++..+.+++.- +.+ |+++++..+++..++
T Consensus       159 l~~~lGk~~v~v~d~----fi~----Nrll~~~~~EA~~l-~~~-Gv~~e~id~~~~~g~  208 (293)
T 1zej_A          159 FLRELGKEVVVCKGQ----SLV----NRFNAAVLSEASRM-IEE-GVRAEDVDRVWKHHL  208 (293)
T ss_dssp             HHHHTTCEEEEEESS----CHH----HHHHHHHHHHHHHH-HHH-TCCHHHHHHHHHTTH
T ss_pred             HHHHcCCeEEEeccc----ccH----HHHHHHHHHHHHHH-HHh-CCCHHHHHHHHHhcC
Confidence            99999976 777753    111    01122223333322 234 889999988886544

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.78  E-value=8.9e-18  Score=154.10  Aligned_cols=192  Identities=14%  Similarity=0.090  Sum_probs=133.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCceeccCchhhhcC---CCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVVEY---SDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---aDvI~lav~~   81 (276)
                      ..+|||||+|.||++|+.+|.++|+    +|++| ||++++++.+.+     .|+..+.++.+++++   +|+||++||+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   84 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGF----TVCAY-NRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKA   84 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence            3689999999999999999999999    99999 999999999987     578878888888876   9999999998


Q ss_pred             -ccHHHHHHHHhhccccccCCcccCCCCccc--HHHHHHHcC--CCcEEEEec--CccccccCcceEeecCCCCCHHHHH
Q 023866           82 -QVDKAAVITEEAFGFCCCRSEIERPSGLQR--WSRWVEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGE  154 (276)
Q Consensus        82 -~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~--~~~l~~~l~--~~~vv~~~p--~~~~~~~~g~~~i~~~~~~~~~~~~  154 (276)
                       +.+++++.++.. .+.++..+++..++. +  ...+.+.+.  +.+++. +|  +.|...+.|.+++..+   +++.++
T Consensus        85 ~~~v~~vl~~l~~-~l~~g~iIId~s~~~-~~~~~~l~~~l~~~g~~~v~-~pVsgg~~~a~~G~~im~gg---~~e~~~  158 (497)
T 2p4q_A           85 GAPVDALINQIVP-LLEKGDIIIDGGNSH-FPDSNRRYEELKKKGILFVG-SGVSGGEEGARYGPSLMPGG---SEEAWP  158 (497)
T ss_dssp             SHHHHHHHHHHGG-GCCTTCEEEECSCCC-HHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CGGGHH
T ss_pred             hHHHHHHHHHHHH-hCCCCCEEEECCCCC-hhHHHHHHHHHHHcCCceeC-CCcccChhHhhcCCeEEecC---CHHHHH
Confidence             589999988721 111112233332444 2  234555443  344553 34  3344344555555543   688999


Q ss_pred             HHHHHhhhcCce-------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 023866          155 LIGKLFGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS  214 (276)
Q Consensus       155 ~v~~ll~~~G~~-------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~  214 (276)
                      .++++|+.+|..       .++++........+.  .+.+.+.+++.+.|+   +.+ .|++++++.+++.
T Consensus       159 ~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~--~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~  227 (497)
T 2p4q_A          159 HIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMV--HNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFA  227 (497)
T ss_dssp             HHHHHHHHHSCEETTEESCCCCEETTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCCCceEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            999999999964       445553222222221  233556677888887   567 5999999988875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.78  E-value=1.3e-17  Score=144.90  Aligned_cols=245  Identities=14%  Similarity=0.097  Sum_probs=153.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------------cCchhhhcCCCEEEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSDVVVF   77 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aDvI~l   77 (276)
                      |||+|||+|.||++++..|.++|+    +|++| +|++  .+.+++.|+.+.             .+..+.+..+|+||+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vil   75 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE----DVHFL-LRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLV   75 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC----CEEEE-CSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-EcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEE
Confidence            799999999999999999999998    99999 9986  377776665321             122344678999999


Q ss_pred             eeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEe---------cCccccccCcceEeecCCCC
Q 023866           78 SVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVM---------PNTPSAVGEAATVMSLGGTA  148 (276)
Q Consensus        78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~---------p~~~~~~~~g~~~i~~~~~~  148 (276)
                      |||++++++++.++.. -+.++..+++-.+|+...+.+++.++..++++.+         |+.....+.|.+.+...++.
T Consensus        76 avk~~~~~~~l~~l~~-~l~~~~~iv~l~nGi~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~  154 (312)
T 3hn2_A           76 GLKTFANSRYEELIRP-LVEEGTQILTLQNGLGNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR  154 (312)
T ss_dssp             CCCGGGGGGHHHHHGG-GCCTTCEEEECCSSSSHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred             ecCCCCcHHHHHHHHh-hcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence            9999999999999820 0111122333338993357889989866777765         44444444444444333334


Q ss_pred             CHHHHHHHHHHhhhcCceEEcCCCC-------------chhhhhhcCchHH-------HHHHHHHHHHH---HHHHcC--
Q 023866          149 TEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPA-------YIFLAIEALAD---GGVAAG--  203 (276)
Q Consensus       149 ~~~~~~~v~~ll~~~G~~~~~~e~~-------------~~~~~a~~g~~p~-------~~~~~~~~l~~---~~~~~G--  203 (276)
                      +.+..+.+.++|+..|..++..++.             ++.++++.++...       ....+...+.|   .+.+.|  
T Consensus       155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~  234 (312)
T 3hn2_A          155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLA  234 (312)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCc
Confidence            5677889999999999777777764             5677888776443       22222333333   356788  


Q ss_pred             CCHH-HHHHHHHHHHHHHHHHHHh-cCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHHH
Q 023866          204 LPRE-LALGLASQTVLGAASMVTK-SGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAKR  271 (276)
Q Consensus       204 l~~~-~a~~~~~~~~~g~~~~~~~-~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~r  271 (276)
                      ++.+ ...+.+...       ..+ ....+.++.|.. ..+.+-...     ++.-++.|+...+.+.+.+.++.
T Consensus       235 ~~~~~~~~~~~~~~-------~~~~~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~  301 (312)
T 3hn2_A          235 TFIADGYVDDMLEF-------TDAMGEYKPSMEIDRE-EGRPLEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQ  301 (312)
T ss_dssp             SCCCTTHHHHHHHH-------HTTSCSCCCHHHHHHH-TTCCCCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHH-------HhcCCCCCchHHHHHH-hCCCccHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            6532 122222111       111 122445665543 222332333     34446678888888888776654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.77  E-value=3.6e-17  Score=142.28  Aligned_cols=234  Identities=17%  Similarity=0.148  Sum_probs=139.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCH-------HHHHHHHHcCceecc-CchhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNL-------KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~   80 (276)
                      +|||||||+|.||.+|+.+|.++| +    +|++| ||++       +..+.+.+.|+  +. ++.+++++||+||+|||
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~----~V~~~-dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp   96 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAA----RLAAY-DLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVV   96 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCS----EEEEE-CGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCC----eEEEE-eCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecC
Confidence            479999999999999999999999 8    99999 9998       56666666787  56 78899999999999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEE-ecC-ccccccCcceEeecCCCCCHHHH
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRV-MPN-TPSAVGEAATVMSLGGTATEEDG  153 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~-~p~-~~~~~~~g~~~i~~~~~~~~~~~  153 (276)
                      ++...+++.++.. .++++..++.. +++ +.   ..+.+.+.  +..++.+ +.. .+...+ ..+.++.++   ++  
T Consensus        97 ~~~~~~~~~~i~~-~l~~~~ivv~~-st~-~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g-~l~i~vgg~---~~--  167 (317)
T 4ezb_A           97 GAATKAVAASAAP-HLSDEAVFIDL-NSV-GPDTKALAAGAIATGKGSFVEGAVMARVPPYAE-KVPILVAGR---RA--  167 (317)
T ss_dssp             GGGHHHHHHHHGG-GCCTTCEEEEC-CSC-CHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGG-GSEEEEEST---TH--
T ss_pred             CHHHHHHHHHHHh-hcCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCeEEeccCCCCchhhcC-CEEEEEeCC---hH--
Confidence            9988777777721 11111222222 444 33   34444443  2334332 111 122212 344555553   33  


Q ss_pred             HHHHHHhhhcCce-EEcCCC-CchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHH-HHHHHHhc
Q 023866          154 ELIGKLFGSVGKI-WRADEK-LFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLG-AASMVTKS  227 (276)
Q Consensus       154 ~~v~~ll~~~G~~-~~~~e~-~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g-~~~~~~~~  227 (276)
                      +.++++|+.+|.. ++++++ .......+.  .+.+.+..+..+.|.   +.+.|++.+ ..+.+..+..+ ....    
T Consensus       168 ~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~--~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~~----  240 (317)
T 4ezb_A          168 VEVAERLNALGMNLEAVGETPGQASSLKMI--RSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWRD----  240 (317)
T ss_dssp             HHHHHHHHTTTCEEEEEESSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHH----
T ss_pred             HHHHHHHHHhCCCeEEeCCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHHH----
Confidence            8899999999975 777762 323333332  234445555555555   568999985 44444433211 1110    


Q ss_pred             CCChHHHHHhcCCCCch----HHHHHHHHHhCChHHHHHHHHHHH
Q 023866          228 GKHPGQLKDDVASPGGT----TIAGIHELEKSGFRGILMNAVVAA  268 (276)
Q Consensus       228 ~~~~~~l~~~v~sp~g~----t~~~l~~l~~~~~~~~~~~a~~~~  268 (276)
                       ..+..+... +.|++.    ....++..++.|+...+.+++.+.
T Consensus       241 -~~~~~~~~~-~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~  283 (317)
T 4ezb_A          241 -VADYYLSRT-FEHGARRVTEMTEAAETIESFGLNAPMSRAACET  283 (317)
T ss_dssp             -HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             -hhhhhhcCC-CCCCcchHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence             011122222 234332    223344445668877788777777

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.77  E-value=7e-18  Score=141.59  Aligned_cols=155  Identities=12%  Similarity=0.142  Sum_probs=114.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH--------------HHHHHH-cCceeccCchhhhcCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--------------RDAFES-IGVKVLSDNNAVVEYS   72 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--------------~~~l~~-~g~~~~~~~~~~~~~a   72 (276)
                      ...+||||||+|+||++|+.+|.++|+    +|++| +|++++              .+.+.+ .+...+.++.+++++|
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a   91 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH----EVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGA   91 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcC
Confidence            457999999999999999999999999    99999 999987              555554 4555566788889999


Q ss_pred             CEEEEeeCcccHHHHHHHH-hhccccccCCcccCCCCc----------------ccHHHHHHHcCCCcEEEEecCccccc
Q 023866           73 DVVVFSVKPQVDKAAVITE-EAFGFCCCRSEIERPSGL----------------QRWSRWVEWTGHSRFIRVMPNTPSAV  135 (276)
Q Consensus        73 DvI~lav~~~~~~~vl~~~-~~~~~~~~~~~l~~~~g~----------------~~~~~l~~~l~~~~vv~~~p~~~~~~  135 (276)
                      |+||+|||++.+.+++.++ .. .+ +++.+++..+|+                ...+.+++.+|+.++++.+++.+..+
T Consensus        92 DvVilavp~~~~~~~~~~i~~~-~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v  169 (245)
T 3dtt_A           92 ELVVNATEGASSIAALTAAGAE-NL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASL  169 (245)
T ss_dssp             SEEEECSCGGGHHHHHHHHCHH-HH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHH
T ss_pred             CEEEEccCcHHHHHHHHHhhhh-hc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHH
Confidence            9999999999988888766 21 11 113333332221                02467888898889999999877654


Q ss_pred             cCc-------c-eEeecCCCCCHHHHHHHHHHhhhcCc-e-EEcCC
Q 023866          136 GEA-------A-TVMSLGGTATEEDGELIGKLFGSVGK-I-WRADE  171 (276)
Q Consensus       136 ~~g-------~-~~i~~~~~~~~~~~~~v~~ll~~~G~-~-~~~~e  171 (276)
                      ..+       . +.+++++  +++.++.++++|+.+|. . +++++
T Consensus       170 ~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          170 MVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             HHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             hcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            322       2 2344443  68999999999999995 4 67776

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.77  E-value=3.3e-18  Score=140.26  Aligned_cols=168  Identities=13%  Similarity=0.135  Sum_probs=127.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC-------ceeccCchhhhcCCCEEEEeeCc
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-------VKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-------~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      |||+||| +|.||++++..|.+.|+    +|+++ +|++++.+.+.+ .+       +. ..+..++++++|+||+|+|+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh
Confidence            6899999 99999999999999998    99999 999998877765 23       33 34566778899999999999


Q ss_pred             ccHHHHHHHHhhccccccCCcccCCCCccc--------------HHHHHHHcCCCcEEEEecCccccccCc------ceE
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERPSGLQR--------------WSRWVEWTGHSRFIRVMPNTPSAVGEA------ATV  141 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~--------------~~~l~~~l~~~~vv~~~p~~~~~~~~g------~~~  141 (276)
                      +.+++++.++.. .+ ++..+++..+|+ +              .+.+++.+++.+++++||+.+.....+      .+.
T Consensus        75 ~~~~~~~~~l~~-~~-~~~~vi~~~~g~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  151 (212)
T 1jay_A           75 EHAIDTARDLKN-IL-REKIVVSPLVPV-SRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDV  151 (212)
T ss_dssp             HHHHHHHHHTHH-HH-TTSEEEECCCCE-ECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEE
T ss_pred             hhHHHHHHHHHH-Hc-CCCEEEEcCCCc-CcCCceeecCCCCcHHHHHHHhCCCCeEEEEccchHHHHhhCcCCCCCccE
Confidence            998888877621 01 113344444666 4              578888888788999998877654332      455


Q ss_pred             eecCCCCCHHHHHHHHHHhhhc-Cce-EEcCCCCchhhhhhcCchHHHHHHH
Q 023866          142 MSLGGTATEEDGELIGKLFGSV-GKI-WRADEKLFDAITGLSGSGPAYIFLA  191 (276)
Q Consensus       142 i~~~~~~~~~~~~~v~~ll~~~-G~~-~~~~e~~~~~~~a~~g~~p~~~~~~  191 (276)
                      ++.++  +++..+.+.++|+.+ |.. +++++  .+...++-+++|+|++..
T Consensus       152 ~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~--~~~a~~~k~~~~~~~~~~  199 (212)
T 1jay_A          152 PVCGD--DDESKKVVMSLISEIDGLRPLDAGP--LSNSRLVESLTPLILNIM  199 (212)
T ss_dssp             EEEES--CHHHHHHHHHHHHHSTTEEEEEEES--GGGHHHHHTHHHHHHHHH
T ss_pred             EEECC--cHHHHHHHHHHHHHcCCCCceeccc--hhHHHHhcchHHHHHHHH
Confidence            66553  588999999999999 976 67765  567777777888876543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.76  E-value=3.1e-18  Score=146.88  Aligned_cols=247  Identities=10%  Similarity=0.027  Sum_probs=149.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---Cc----eeccCchhhhcCCCEEEEeeCccc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GV----KVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~----~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      |||+|||+|+||++|+..|.++|+    +|++| +|++++.+.+...   |.    .+..+..+.++++|+||+|||+++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~   75 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ   75 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC----CEEEE-EcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh
Confidence            689999999999999999999999    99999 9998766544332   21    112234566789999999999999


Q ss_pred             HHHHHHHHhhccccccCCcccCCCCcccH-HHHHHHcCC-------CcEEEEecCccccccCcceEeecCCCCCHHHHHH
Q 023866           84 DKAAVITEEAFGFCCCRSEIERPSGLQRW-SRWVEWTGH-------SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGEL  155 (276)
Q Consensus        84 ~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~~l~~-------~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~  155 (276)
                      +.+++.++.. .+.++..+++..+|+ .. +.+++.++.       ....+..| .+...+.|.+.+...+ .+++..+.
T Consensus        76 ~~~v~~~l~~-~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~-~~~~~~~~  151 (291)
T 1ks9_A           76 VSDAVKSLAS-TLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPAR-QQDGDYSY  151 (291)
T ss_dssp             HHHHHHHHHT-TSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESS-GGGTTCTH
T ss_pred             HHHHHHHHHh-hCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCC-CCcchHHH
Confidence            9999988821 111112233333676 43 566666653       01123445 4555566665554322 24667889


Q ss_pred             HHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH----HHHHHHHH---HHHHHcCCCH--HHHHHHH
Q 023866          156 IGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI----FLAIEALA---DGGVAAGLPR--ELALGLA  213 (276)
Q Consensus       156 v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~----~~~~~~l~---~~~~~~Gl~~--~~a~~~~  213 (276)
                      +.++|+.+|..++..++             .++.+++++++....+    ..+...+.   ..+.+.|++.  +...+.+
T Consensus       152 ~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~  231 (291)
T 1ks9_A          152 LADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYV  231 (291)
T ss_dssp             HHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999977555555             4677888877753321    12223333   3456889875  4443433


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHhc---CC-CCchHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 023866          214 SQTVLGAASMVTKSGKHPGQLKDDV---AS-PGGTTIAGIHELEKSGFRGILMNAVVAAAKRS  272 (276)
Q Consensus       214 ~~~~~g~~~~~~~~~~~~~~l~~~v---~s-p~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~  272 (276)
                      ...+..+      ....+.++.+..   .+ -....-..++.-++.|++..+.+++.+.++..
T Consensus       232 ~~~~~~~------~~~~ssm~~d~~~g~~~e~~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~  288 (291)
T 1ks9_A          232 MQVIDAT------AENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRK  288 (291)
T ss_dssp             HHHHHHT------TTCCCHHHHHHHTTCCCSGGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             HHHHhcC------CCCCChHHHHHHcCCccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3322211      111233332211   11 11122233445566788888888887777654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.76  E-value=9.5e-17  Score=142.39  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=111.5

Q ss_pred             CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC--------------ceeccCchhhh
Q 023866            4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVV   69 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~   69 (276)
                      +...|.|+||+|||+|+||.+|+.+|.++|+    +|++| +|++++++.+.+.+              +..+.++.+++
T Consensus         9 ~~~~m~M~kI~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (366)
T 1evy_A            9 KDELLYLNKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY   83 (366)
T ss_dssp             CCCCCCEEEEEEECCSHHHHHHHHHHTTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH
T ss_pred             hhHhhccCeEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHH
Confidence            3444454499999999999999999999999    99999 99999998887642              44556777888


Q ss_pred             cCCCEEEEeeCcccHHHHHHH----Hhhccccc-cCCcccCCCCcccHH---HHH----HHcCC-CcEEEEecCcccccc
Q 023866           70 EYSDVVVFSVKPQVDKAAVIT----EEAFGFCC-CRSEIERPSGLQRWS---RWV----EWTGH-SRFIRVMPNTPSAVG  136 (276)
Q Consensus        70 ~~aDvI~lav~~~~~~~vl~~----~~~~~~~~-~~~~l~~~~g~~~~~---~l~----~~l~~-~~vv~~~p~~~~~~~  136 (276)
                      +++|+||+|||++++.+++.+    +.. .+.+ +..+++..+|+ ..+   .+.    +.++. ...++..|+++..++
T Consensus        84 ~~aDvVilav~~~~~~~v~~~~~~gl~~-~l~~~~~ivv~~~~gi-~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~  161 (366)
T 1evy_A           84 NGAEIILFVIPTQFLRGFFEKSGGNLIA-YAKEKQVPVLVCTKGI-ERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVA  161 (366)
T ss_dssp             TTCSSEEECCCHHHHHHHHHHHCHHHHH-HHHHHTCCEEECCCSC-CTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHH
T ss_pred             cCCCEEEECCChHHHHHHHHHhHHHHHH-hcCccCCEEEEECCcC-CCccccCHHHHHHHHCCCCcEEEEeCCChHHHHH
Confidence            899999999999999999887    621 1111 23344444566 432   222    33332 135677888877655


Q ss_pred             Ccce-EeecCCCCCHHHHHHHHHHhhhc--CceEEcCCC
Q 023866          137 EAAT-VMSLGGTATEEDGELIGKLFGSV--GKIWRADEK  172 (276)
Q Consensus       137 ~g~~-~i~~~~~~~~~~~~~v~~ll~~~--G~~~~~~e~  172 (276)
                      .|.. .++.+ +.+++..+.++++|+..  |..++..++
T Consensus       162 ~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~d  199 (366)
T 1evy_A          162 TGVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTD  199 (366)
T ss_dssp             TTCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESC
T ss_pred             hCCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            5542 22222 24678899999999999  755444443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.75  E-value=7.8e-17  Score=147.25  Aligned_cols=154  Identities=18%  Similarity=0.115  Sum_probs=117.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~   63 (276)
                      |+.+||+|||+|.||.+||..|.++|+    +|++| |+++++++.+.+           .|             +..++
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~   77 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGH----QVLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT   77 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence            356799999999999999999999999    99999 999998877543           22             34455


Q ss_pred             CchhhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||+|||++  ...+++.++.. .+.+ ..++ +..+++ ++..+++.+. ..++++.||..|..+.. .
T Consensus        78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~-~~~~-~~IlasntSti-~i~~ia~~~~~p~~~ig~hf~~Pa~v~~-L  152 (483)
T 3mog_A           78 DI-HALAAADLVIEAASERLEVKKALFAQLAE-VCPP-QTLLTTNTSSI-SITAIAAEIKNPERVAGLHFFNPAPVMK-L  152 (483)
T ss_dssp             CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHH-HSCT-TCEEEECCSSS-CHHHHTTTSSSGGGEEEEEECSSTTTCC-E
T ss_pred             CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHH-hhcc-CcEEEecCCCC-CHHHHHHHccCccceEEeeecChhhhCC-e
Confidence            55 4689999999999877  33577777631 1111 2333 455888 8888887765 35799999999887664 4


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      ..++.+..++++.++.+.++++.+|+. +++++
T Consensus       153 vevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d  185 (483)
T 3mog_A          153 VEVVSGLATAAEVVEQLCELTLSWGKQPVRCHS  185 (483)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence            456677778999999999999999976 66664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.75  E-value=5.3e-17  Score=148.57  Aligned_cols=196  Identities=11%  Similarity=0.068  Sum_probs=132.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----CceeccCchhhhcC---CCEEEEeeC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDvI~lav~   80 (276)
                      |.++||||||+|.||++|+.+|.++|+    +|++| ||++++++.+.+.    |+..+.++.+++++   +|+||+|||
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp   77 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVESRGY----TVAIY-NRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQ   77 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCC
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEcc
Confidence            456799999999999999999999999    99999 9999999988774    78777888888776   999999999


Q ss_pred             c-ccHHHHHHHHhhccccccCCcccCCCCcc-cHHHHHHHcCC--CcEEEEecCc--cccccCcceEeecCCCCCHHHHH
Q 023866           81 P-QVDKAAVITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTGH--SRFIRVMPNT--PSAVGEAATVMSLGGTATEEDGE  154 (276)
Q Consensus        81 ~-~~~~~vl~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~~--~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~~  154 (276)
                      + +.+++++.++.. .+.++..+++..++.. ....+.+.++.  ..++. +|..  +...+.|.+.++.+   +++..+
T Consensus        78 ~~~~v~~vl~~l~~-~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~  152 (474)
T 2iz1_A           78 AGAATDATIKSLLP-LLDIGDILIDGGNTHFPDTMRRNAELADSGINFIG-TGVSGGEKGALLGPSMMPGG---QKEAYD  152 (474)
T ss_dssp             TTHHHHHHHHHHGG-GCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE-EEECSHHHHHHHCCCEEEEE---CHHHHH
T ss_pred             CchHHHHHHHHHHh-hCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC-CCCCCChhhhccCCeEEecC---CHHHHH
Confidence            8 578999988721 1111122333334541 12456666652  34443 3432  22234455545433   788999


Q ss_pred             HHHHHhhhcCce---------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 023866          155 LIGKLFGSVGKI---------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ  215 (276)
Q Consensus       155 ~v~~ll~~~G~~---------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~~~  215 (276)
                      .++++|+.+|..         .++++........+.  .+.+.+.+++.+.|+   +.+ .|++.+++.+++..
T Consensus       153 ~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~--~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~  224 (474)
T 2iz1_A          153 LVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMV--HNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE  224 (474)
T ss_dssp             HHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCceEEEECCccHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            999999999964         334442222222221  123445566777777   567 79999998888753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.75  E-value=4.1e-16  Score=140.82  Aligned_cols=190  Identities=14%  Similarity=0.084  Sum_probs=130.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH--------HHHHcC-------------ceeccCch
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--------AFESIG-------------VKVLSDNN   66 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--------~l~~~g-------------~~~~~~~~   66 (276)
                      ++.+||+|||+|.||.+||..|.++|+    +|++| |+++++..        .+.+.|             +..+++. 
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-  125 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAGI----ETFLV-VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-  125 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-
Confidence            456899999999999999999999999    99999 99998432        232333             3455566 


Q ss_pred             hhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEe
Q 023866           67 AVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVM  142 (276)
Q Consensus        67 ~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i  142 (276)
                      +.+++||+||+|||.+  ...+++.++.. .+++ ..++ +..+++ ++..+++.+. ..++++.||..|......+. +
T Consensus       126 ~al~~aDlVIeAVpe~~~vk~~v~~~l~~-~~~~-~aIlasnTSsl-~i~~ia~~~~~p~r~iG~HffnPv~~m~LvE-I  201 (460)
T 3k6j_A          126 HKLSNCDLIVESVIEDMKLKKELFANLEN-ICKS-TCIFGTNTSSL-DLNEISSVLRDPSNLVGIHFFNPANVIRLVE-I  201 (460)
T ss_dssp             GGCTTCSEEEECCCSCHHHHHHHHHHHHT-TSCT-TCEEEECCSSS-CHHHHHTTSSSGGGEEEEECCSSTTTCCEEE-E
T ss_pred             HHHccCCEEEEcCCCCHHHHHHHHHHHHh-hCCC-CCEEEecCCCh-hHHHHHHhccCCcceEEEEecchhhhCCEEE-E
Confidence            4689999999999864  34577777731 1111 2233 444777 8888888775 35799999988887655444 5


Q ss_pred             ecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866          143 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       143 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                      +.+..++++.++.+.++++.+|+. +++++.  .-+.     .+-++..++......+.+.|.++++..+++.
T Consensus       202 v~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~--pGfi-----~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~  267 (460)
T 3k6j_A          202 IYGSHTSSQAIATAFQACESIKKLPVLVGNC--KSFV-----FNRLLHVYFDQSQKLMYEYGYLPHQIDKIIT  267 (460)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHTTCEEEEESSC--CHHH-----HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHHhCCEEEEEecc--cHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            567778999999999999999986 777652  1110     0111111111111223478999998887765

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.59  E-value=1.2e-19  Score=147.70  Aligned_cols=151  Identities=12%  Similarity=0.147  Sum_probs=114.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ...|||+|||+|+||++|+.+|.+.|+    +|++| +|+++ .+.+...|+... ++.++++++|+||++||+++++++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~~~~v   89 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGY----SVVFG-SRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHREHYDFL   89 (201)
Confidence            346899999999999999999999998    99999 99987 555655677655 677888899999999999988887


Q ss_pred             HHHHhhccccccCCcccCCCCccc--------HHHHHHHcCCCcEEEEecCccccccC-cc-----eEeecCCCCCHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQR--------WSRWVEWTGHSRFIRVMPNTPSAVGE-AA-----TVMSLGGTATEEDG  153 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~--------~~~l~~~l~~~~vv~~~p~~~~~~~~-g~-----~~i~~~~~~~~~~~  153 (276)
                      + ++.  ...++..+++..+|+ +        .+.+++.+++.+++|+|||+|+...+ |.     +.++.+.  +++.+
T Consensus        90 ~-~l~--~~~~~~ivI~~~~G~-~~~~~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~--~~~~~  163 (201)
T 2yjz_A           90 A-ELA--DSLKGRVLIDVSNNQ-KMNQYPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGN--DSKAK  163 (201)
Confidence            6 441  111113344444777 4        36777888777999999999988765 44     1344443  67889


Q ss_pred             HHHHHHhhhcCce-EEcCC
Q 023866          154 ELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       154 ~~v~~ll~~~G~~-~~~~e  171 (276)
                      +.++++|+.+|.. +++++
T Consensus       164 ~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          164 DRVMDIARTLGLTPLDQGS  182 (201)
Confidence            9999999999965 66665

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.74  E-value=1.7e-16  Score=144.48  Aligned_cols=194  Identities=11%  Similarity=0.080  Sum_probs=125.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---C--ceeccCchhhhc---CCCEEEEee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---G--VKVLSDNNAVVE---YSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g--~~~~~~~~~~~~---~aDvI~lav   79 (276)
                      +.+|+|||||+|.||.+|+.+|.++|+    +|++| ||++++++.+.+.   +  +..+.++.++++   ++|+||++|
T Consensus         2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~V   76 (484)
T 4gwg_A            2 NAQADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLV   76 (484)
T ss_dssp             -CCBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECS
T ss_pred             CCCCEEEEEChhHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEec
Confidence            467899999999999999999999999    99999 9999999998874   3  334577888876   599999999


Q ss_pred             Ccc-cHHHHHHHHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHH
Q 023866           80 KPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDG  153 (276)
Q Consensus        80 ~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~  153 (276)
                      |+. .+++++.++.. .+.++..++...++.. +...+.+.+.  +.+++.+ |.  .+.....|..+++.+   +++.+
T Consensus        77 p~~~~v~~vl~~l~~-~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~-pVsGg~~gA~~G~~im~GG---~~ea~  151 (484)
T 4gwg_A           77 KAGQAVDDFIEKLVP-LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS-GVSGGEEGARYGPSLMPGG---NKEAW  151 (484)
T ss_dssp             CSSHHHHHHHHHHGG-GCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHHHHCCEEEEEE---CGGGH
T ss_pred             CChHHHHHHHHHHHH-hcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC-CccCCHHHHhcCCeeecCC---CHHHH
Confidence            985 78899988821 1111111222212220 1123333332  3455543 32  122222455555544   68899


Q ss_pred             HHHHHHhhhcCce--------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHH
Q 023866          154 ELIGKLFGSVGKI--------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLA  213 (276)
Q Consensus       154 ~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~-~Gl~~~~a~~~~  213 (276)
                      +.++++|+.+|..        +++++.....++.+.  .+.+.+..++.+.|+   +.+ .|++.++..+++
T Consensus       152 ~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv--~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~  221 (484)
T 4gwg_A          152 PHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMV--HNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAF  221 (484)
T ss_dssp             HHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999953        345553222233222  133455666677666   356 899999888876

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.73  E-value=2.8e-16  Score=138.70  Aligned_cols=157  Identities=17%  Similarity=0.140  Sum_probs=110.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCeEEEEeCCCHH-----HHHHHHHc--------------Ccee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKV   61 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~   61 (276)
                      |.+|||+|||+|+||++|+..|.++|       +    +|++| +|+++     +.+.+.+.              ++..
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP----RVTMW-VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA   80 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEE----EEEEE-CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE
Confidence            45679999999999999999999998       7    99999 99988     88777642              2344


Q ss_pred             ccCchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH---------HHHHHHcCCCcEEEEecCcc
Q 023866           62 LSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW---------SRWVEWTGHSRFIRVMPNTP  132 (276)
Q Consensus        62 ~~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---------~~l~~~l~~~~vv~~~p~~~  132 (276)
                      +.++.++++++|+||+|||++.+.+++.++.. .+.++..+++..+|+ ..         +.+.+.++....++.+|+++
T Consensus        81 ~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~-~l~~~~ivv~~~~Gi-~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a  158 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKG-HLKANATGISLIKGV-DEGPNGLKLISEVIGERLGIPMSVLMGANIA  158 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTT-CSCTTCEEEECCCCB-CSSSSSCCBHHHHHHHHHTCCEEEEECSCCH
T ss_pred             EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHh-hCCCCCEEEEECCcc-CCCCCccccHHHHHHHHcCCCEEEEECCCcH
Confidence            56677788999999999999999999998821 111112233333666 31         23444455224577889988


Q ss_pred             ccccCcc-eEeecCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          133 SAVGEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       133 ~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      ..++.|. +.++.+ ..+++..+.++++|+..|..++..++
T Consensus       159 ~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~d  198 (354)
T 1x0v_A          159 SEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQE  198 (354)
T ss_dssp             HHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESC
T ss_pred             HHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCC
Confidence            7766654 233322 24678899999999999976554444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.73  E-value=2.9e-16  Score=139.73  Aligned_cols=156  Identities=13%  Similarity=0.100  Sum_probs=109.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-------CCCCCeEEEEeCCCHH-----HHHHHHHc--------------Cceecc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVLS   63 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~~~   63 (276)
                      +|||+|||+|+||++|+..|.++|       +    +|++| +|+++     +.+.+.+.              ++..++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~   95 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFEN----EVRMW-IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS   95 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCS----CEEEE-CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCC----eEEEE-ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence            468999999999999999999999       7    99999 99988     88877652              345566


Q ss_pred             CchhhhcCCCEEEEeeCcccHHHHHHHHhhc---cccccCCcccCCCCcccH---------HHHHHHcCCCcEEEEecCc
Q 023866           64 DNNAVVEYSDVVVFSVKPQVDKAAVITEEAF---GFCCCRSEIERPSGLQRW---------SRWVEWTGHSRFIRVMPNT  131 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~---~~~~~~~~l~~~~g~~~~---------~~l~~~l~~~~vv~~~p~~  131 (276)
                      ++.++++++|+||+|||++++++++.++...   .+.++..+++..+|+ +.         +.+.+.++....++..|+.
T Consensus        96 ~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi-~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~  174 (375)
T 1yj8_A           96 DLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF-IVKKNQMKLCSNYISDFLNIPCSALSGANI  174 (375)
T ss_dssp             STHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSC-EEETTEEECHHHHHHHHSSSCEEEEECSCC
T ss_pred             CHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc-ccCCccccCHHHHHHHHcCCCEEEEeCCch
Confidence            7778889999999999999999999988210   111112233333666 33         2234444422356778998


Q ss_pred             cccccCcceE-eecCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          132 PSAVGEAATV-MSLGGTATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       132 ~~~~~~g~~~-i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      +..++.|... ++.+ +.+++..+.++++|+..|..++..++
T Consensus       175 a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~d  215 (375)
T 1yj8_A          175 AMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNE  215 (375)
T ss_dssp             HHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESC
T ss_pred             HHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCC
Confidence            8766555432 2222 24678899999999999966444443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.72  E-value=2.3e-16  Score=144.58  Aligned_cols=191  Identities=11%  Similarity=0.072  Sum_probs=129.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCceeccCchhhhc---CCCEEEEeeCcc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVVE---YSDVVVFSVKPQ   82 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~---~aDvI~lav~~~   82 (276)
                      |||||||+|.||++|+.+|.++|+    +|++| +|++++++.+.+     .|+..+.++.++++   ++|+||+|||+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~   77 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG   77 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCCh
Confidence            689999999999999999999999    99999 999999999887     67877788888764   899999999985


Q ss_pred             -cHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecCc--cccccCcceEeecCCCCCHHHHHH
Q 023866           83 -VDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPNT--PSAVGEAATVMSLGGTATEEDGEL  155 (276)
Q Consensus        83 -~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~~~  155 (276)
                       .+++++.++.. .+.++..+++..+|. ..  ..+.+.++  +..++. +|..  +...+.|.+++..+   +++..+.
T Consensus        78 ~~v~~vl~~l~~-~l~~g~iII~~s~~~-~~~~~~l~~~l~~~g~~~v~-~pv~g~~~~a~~g~~i~~gg---~~e~~~~  151 (482)
T 2pgd_A           78 QAVDNFIEKLVP-LLDIGDIIIDGGNSE-YRDTMRRCRDLKDKGILFVG-SGVSGGEDGARYGPSLMPGG---NKEAWPH  151 (482)
T ss_dssp             HHHHHHHHHHHH-HCCTTCEEEECSCCC-HHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CTTTHHH
T ss_pred             HHHHHHHHHHHh-hcCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEeC-CCCCCChhhhccCCeEEeCC---CHHHHHH
Confidence             78999887721 111112333333555 32  34555443  344553 3532  33334555555443   5778999


Q ss_pred             HHHHhhhcCceE--------EcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHc-CCCHHHHHHHHH
Q 023866          156 IGKLFGSVGKIW--------RADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA-GLPRELALGLAS  214 (276)
Q Consensus       156 v~~ll~~~G~~~--------~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~-Gl~~~~a~~~~~  214 (276)
                      ++++|+.+|..+        ++++........+.  .+.+.+.++..+.|+   +.+. |++.+++.+++.
T Consensus       152 v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~--~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          152 IKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMV--HNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             HHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhhccCCCcceEEECCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence            999999999643        23322221122211  123445566777777   5678 999998888875

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.72  E-value=2.8e-16  Score=137.46  Aligned_cols=154  Identities=11%  Similarity=0.082  Sum_probs=110.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHHcCc-----------eecc--CchhhhcCCCEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGV-----------KVLS--DNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~aDvI   75 (276)
                      |||+|||+|.||++++..|.++|+    +|++| +|  ++++.+.+.+.|.           ..++  ++.++++++|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC----eEEEE-EccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence            689999999999999999999999    99999 99  9999998887653           3444  566778899999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCCCCc-----ccHHHHHHHcCC------CcEEEEecCccccccCcc-eEee
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL-----QRWSRWVEWTGH------SRFIRVMPNTPSAVGEAA-TVMS  143 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~-----~~~~~l~~~l~~------~~vv~~~p~~~~~~~~g~-~~i~  143 (276)
                      |+|||++++.+++.++. . +.++..+++..+|+     .+.+.+.+.++.      ...++..|+.+...+.|. +.++
T Consensus        76 i~~v~~~~~~~v~~~i~-~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~  153 (335)
T 1txg_A           76 LLGVSTDGVLPVMSRIL-P-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVV  153 (335)
T ss_dssp             EECSCGGGHHHHHHHHT-T-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEE
T ss_pred             EEcCChHHHHHHHHHHh-c-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEE
Confidence            99999999999998882 1 22222233333565     234566666552      125577788876665554 3333


Q ss_pred             cCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          144 LGGTATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                      .+. .+++..+.+.++|+..|..++..++
T Consensus       154 ~~~-~~~~~~~~~~~ll~~~g~~~~~~~d  181 (335)
T 1txg_A          154 FSS-PSESSANKMKEIFETEYFGVEVTTD  181 (335)
T ss_dssp             EEC-SCHHHHHHHHHHHCBTTEEEEEESC
T ss_pred             EEe-CCHHHHHHHHHHhCCCcEEEEecCc
Confidence            322 3678899999999999976444443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.71  E-value=5.1e-16  Score=136.10  Aligned_cols=241  Identities=15%  Similarity=0.176  Sum_probs=144.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhhcCCCE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDV   74 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDv   74 (276)
                      |++|||+|||+|.||++++..|.++|+    +|++| +|+ ++.+.+++.|+..             +++..+ +.++|+
T Consensus         1 M~~mkI~IiGaG~~G~~~a~~L~~~g~----~V~~~-~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~   73 (335)
T 3ghy_A            1 MSLTRICIVGAGAVGGYLGARLALAGE----AINVL-ARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDV   73 (335)
T ss_dssp             -CCCCEEEESCCHHHHHHHHHHHHTTC----CEEEE-CCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-ECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCE
Confidence            346899999999999999999999998    99999 996 6778887766543             234444 688999


Q ss_pred             EEEeeCcccHHHHHHHHhhccccccCCcccC-------CCCc-------------------ccHHHHHHHcCCCcEEEEe
Q 023866           75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIER-------PSGL-------------------QRWSRWVEWTGHSRFIRVM  128 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~-------~~g~-------------------~~~~~l~~~l~~~~vv~~~  128 (276)
                      ||+|||++++++++.++        .+++.+       .+|+                   ...+.+.+.+|..+++...
T Consensus        74 Vilavk~~~~~~~~~~l--------~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv  145 (335)
T 3ghy_A           74 VIVAVKAPALESVAAGI--------APLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCV  145 (335)
T ss_dssp             EEECCCHHHHHHHHGGG--------SSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEE
T ss_pred             EEEeCCchhHHHHHHHH--------HhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEE
Confidence            99999999999999888        444433       3774                   1234688888865665433


Q ss_pred             ---------cCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEcCCCC-------------chhhhhhcCchHH
Q 023866          129 ---------PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPA  186 (276)
Q Consensus       129 ---------p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~-------------~~~~~a~~g~~p~  186 (276)
                               |+.....+.+.+.+...++.+.+..+.+.++|+..|..++..++.             ++.+++++++...
T Consensus       146 ~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g  225 (335)
T 3ghy_A          146 VHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCD  225 (335)
T ss_dssp             ECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHH
T ss_pred             EEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChH
Confidence                     333333344433333222334577888999999999776655542             3556666665332


Q ss_pred             HH-------HHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHhcCCCC-chHHHH-----H
Q 023866          187 YI-------FLAIEALA---DGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQLKDDVASPG-GTTIAG-----I  249 (276)
Q Consensus       187 ~~-------~~~~~~l~---~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~~l~~~v~sp~-g~t~~~-----l  249 (276)
                      .+       ..+...+.   ..+.+.|++.+...+-+   +.    ...+ ....+.++ +++...+ -+-+..     +
T Consensus       226 ~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~---~~----~~~~~~~~~sSM~-qD~~~gr~~tEid~i~G~vv  297 (335)
T 3ghy_A          226 RILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEAR---SA----VTRQLGAFKTSML-QDAEAGRGPLEIDALVASVR  297 (335)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHH---HH----HHHTTCSCCCTTT-C-----CCCCCHHHHTHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHH---HH----HHhccCCCCcHHH-HHHHcCCCCchHHHHhhHHH
Confidence            21       12222333   33567787643221111   11    1111 12234444 3343333 222333     3


Q ss_pred             HHHHhCChHHHHHHHHHHHHHH
Q 023866          250 HELEKSGFRGILMNAVVAAAKR  271 (276)
Q Consensus       250 ~~l~~~~~~~~~~~a~~~~~~r  271 (276)
                      +.-++.|+...+.+.+.+.++.
T Consensus       298 ~~a~~~gv~~P~~~~l~~li~~  319 (335)
T 3ghy_A          298 EIGLHVGVPTPQIDTLLGLVRL  319 (335)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHH
Confidence            3345668888888877766543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.69  E-value=1.3e-15  Score=139.41  Aligned_cols=192  Identities=12%  Similarity=0.112  Sum_probs=127.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-C-------ceeccCchhhhc---CCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G-------VKVLSDNNAVVE---YSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~---~aDvI~lav   79 (276)
                      |||||||+|.||++|+.+|.++|+    +|++| +|++++.+.+.+. |       +..+.++.++++   ++|+||+||
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaV   76 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence            689999999999999999999999    99999 9999999988763 6       666777878776   499999999


Q ss_pred             Ccc-cHHHHHHHHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEEecCc--cccccCcceEeecCCCCCHHHH
Q 023866           80 KPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRVMPNT--PSAVGEAATVMSLGGTATEEDG  153 (276)
Q Consensus        80 ~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~  153 (276)
                      |+. .+++++.++.. .+.++..+++..+|.. +...+.+.++  +..++. +|..  +.....|.+.++.+   +++..
T Consensus        77 p~~~~v~~vl~~l~~-~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~  151 (478)
T 1pgj_A           77 QAGAATDSTIEQLKK-VFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEGARKGPAFFPGG---TLSVW  151 (478)
T ss_dssp             CCSHHHHHHHHHHHH-HCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHHHHHCCEEEEEE---CHHHH
T ss_pred             CChHHHHHHHHHHHh-hCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHHHhcCCeEeccC---CHHHH
Confidence            985 78999887721 1111123333335551 1244555554  233443 2332  22223455444433   68889


Q ss_pred             HHHHHHhhhcCce--------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 023866          154 ELIGKLFGSVGKI--------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLAS  214 (276)
Q Consensus       154 ~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~  214 (276)
                      +.++++|+.+|..        .++++........+.  .+.+.+.++..+.|+   +.+.|++.+++.+++.
T Consensus       152 ~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~--~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          152 EEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMY--HNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             HHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            9999999999954        344443222222221  123444555666665   5689999998888775

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.69  E-value=3e-15  Score=130.24  Aligned_cols=233  Identities=14%  Similarity=0.169  Sum_probs=146.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDvI   75 (276)
                      .++||+|||+|.||++++..|.++|+    +|++|  +++++.+.+++.|+..             +++. +.+.++|+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~----~V~l~--~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   90 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH----EVILI--ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV   90 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC----EEEEE--CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC----eEEEE--EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence            36899999999999999999999999    99999  5678888888755432             3344 446899999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccC-------CCCcccH-HHHHHHcCCCcEEE---------EecCccccccCc
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIER-------PSGLQRW-SRWVEWTGHSRFIR---------VMPNTPSAVGEA  138 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~-------~~g~~~~-~~l~~~l~~~~vv~---------~~p~~~~~~~~g  138 (276)
                      |+|||++++++++.++        .+++.+       .+|+ .. +.+.+.++ .+++.         ..|+.....+.|
T Consensus        91 ilavk~~~~~~~l~~l--------~~~l~~~~~iv~~~nGi-~~~~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~~g  160 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAM--------KPALAKSALVLSLQNGV-ENADTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHGRG  160 (318)
T ss_dssp             EECCCGGGHHHHHHHH--------TTTSCTTCEEEEECSSS-SHHHHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcccccHHHHHHHH--------HHhcCCCCEEEEeCCCC-CcHHHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcCCc
Confidence            9999999999999998        454443       3888 55 67888886 44432         236666666666


Q ss_pred             ceEeecCCCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH----------HHHHHHH
Q 023866          139 ATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI----------FLAIEAL  195 (276)
Q Consensus       139 ~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~----------~~~~~~l  195 (276)
                      .+.+  +.   .+..+.+.++|+..|..++.+++             -++.++++.++...-+          ...+.-+
T Consensus       161 ~~~i--g~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~  235 (318)
T 3hwr_A          161 ELVI--EP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEEC  235 (318)
T ss_dssp             EEEE--CC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHH
T ss_pred             eEEE--cC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHH
Confidence            5433  32   34567889999999976666665             2455666666544321          2222233


Q ss_pred             HHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCch-----HHHHHHHHHhCChHHHHHHHHHHHH
Q 023866          196 ADGGVAAGLPREL-ALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT-----TIAGIHELEKSGFRGILMNAVVAAA  269 (276)
Q Consensus       196 ~~~~~~~Gl~~~~-a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~-----t~~~l~~l~~~~~~~~~~~a~~~~~  269 (276)
                      ...+.+.|++.+. ..+.+...+..   +   ....+.++.|... .+-+     +-.-++.-++.|+...+.+.+...+
T Consensus       236 ~~va~a~G~~l~~~~~~~~~~~~~~---~---~~~~sSM~qD~~~-gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~ll  308 (318)
T 3hwr_A          236 FAVARAEGVKLPDDVALAIRRIAET---M---PRQSSSTAQDLAR-GKRSEIDHLNGLIVRRGDALGIPVPANRVLHALV  308 (318)
T ss_dssp             HHHHHHTTCCCCTTHHHHHHHHHHH---S---TTCCCHHHHHHHT-TCCCSGGGTHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHh---c---CCCCcHHHHHHHc-CChhHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            3335678876432 22222111111   1   1234566665442 2222     2233455567788888887776655


Q ss_pred             H
Q 023866          270 K  270 (276)
Q Consensus       270 ~  270 (276)
                      +
T Consensus       309 ~  309 (318)
T 3hwr_A          309 R  309 (318)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.69  E-value=2.6e-15  Score=130.76  Aligned_cols=239  Identities=14%  Similarity=0.122  Sum_probs=145.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---------------eccCchhhhcCCCEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---------------VLSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---------------~~~~~~~~~~~aDvI   75 (276)
                      |||+|||+|.||++++..|.++|+    +|++| +|++  .+.+++.|+.               ++.+.+++.+++|+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlV   75 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH----CVSVV-SRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCT   75 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC----EEEEE-CSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEE
Confidence            799999999999999999999998    99999 9986  3666665542               234455655589999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccC-------CCCcccHHHHHHHcCCCcEEEEecCccc------cc---cCcc
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIER-------PSGLQRWSRWVEWTGHSRFIRVMPNTPS------AV---GEAA  139 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~-------~~g~~~~~~l~~~l~~~~vv~~~p~~~~------~~---~~g~  139 (276)
                      |+|||++++.+++.++        ++++.+       .+|+...+.+++.++..+++.......+      .+   +.+.
T Consensus        76 ilavK~~~~~~~l~~l--------~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~  147 (320)
T 3i83_A           76 LLCIKVVEGADRVGLL--------RDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGR  147 (320)
T ss_dssp             EECCCCCTTCCHHHHH--------TTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCChHHHHHHH--------HhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCE
Confidence            9999999999999998        555543       2888335789999986666665432211      11   2222


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCceEEcCCCC-------------chhhhhhcCchHHH---------HHHHHHHHHH
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPAY---------IFLAIEALAD  197 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~-------------~~~~~a~~g~~p~~---------~~~~~~~l~~  197 (276)
                      +.+...++.+.+..+.+.++|+..|..++..++.             ++.++++.++....         +...+.-+..
T Consensus       148 ~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~  227 (320)
T 3i83_A          148 LMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRA  227 (320)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHH
Confidence            2232222334577888999999999766665551             34567777653221         1122222333


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHH
Q 023866          198 GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAK  270 (276)
Q Consensus       198 ~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~  270 (276)
                      .+.+.|++.+.  +++...+.-+...   ....+.++.|.. ..+.+-...     ++.-++.|+...+.+.+.+.++
T Consensus       228 va~a~G~~l~~--~~~~~~~~~~~~~---~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~~l~  299 (320)
T 3i83_A          228 VAAANGHPLPE--DIVEKNVASTYKM---PPYKTSMLVDFE-AGQPMETEVILGNAVRAGRRTRVAIPHLESVYALMK  299 (320)
T ss_dssp             HHHHTTCCCCT--THHHHHHHHHHHS---CCCCCHHHHHHH-HTCCCCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCCh--HHHHHHHHHHhcC---CCCCCcHHHHHH-hCCCchHHHHccHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            35678876431  1222222111111   122445555443 222222233     4444667888888877766554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.68  E-value=3.1e-15  Score=142.92  Aligned_cols=187  Identities=15%  Similarity=0.035  Sum_probs=129.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~   63 (276)
                      +..+||+|||+|.||.+||..|.++|+    +|++| |+++++++..           .+.|             ++.++
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~  386 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL  386 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred             ccCCEEEEECCChhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence            457899999999999999999999999    99999 9999887653           2233             34555


Q ss_pred             CchhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||+|||.+.  ..+++.++.. .+.+ ..++ +..+++ ++..+.+.+.. .+++..|+..|......+
T Consensus       387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~-~~~~-~~IlasntStl-~i~~la~~~~~~~~~ig~hf~~P~~~~~lv  462 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVEN-HVRE-DAILASNTSTI-SISLLAKALKRPENFVGMHFFNPVHMMPLV  462 (715)
T ss_dssp             SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHT-TSCT-TCEEEECCSSS-CHHHHGGGCSCGGGEEEEECCSSTTTCCEE
T ss_pred             CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHh-hCCC-CeEEEeCCCCC-CHHHHHHHhcCccceEEEEccCCcccCceE
Confidence            66 67899999999998653  4567777631 1111 2223 344777 88888877652 578999998887765544


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~  213 (276)
                      . ++.++.++++.++.+.++++.+|+. +++++.  .-+   .  .+.++ ..+.++ .. ..+.|+++++..+++
T Consensus       463 e-vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gf---i--~Nril~~~~~Ea-~~-l~~~G~~~~~id~~~  528 (715)
T 1wdk_A          463 E-VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC--PGF---L--VNRVLFPYFGGF-AK-LVSAGVDFVRIDKVM  528 (715)
T ss_dssp             E-EEECSSCCHHHHHHHHHHHHHTTCEEEEEESC--TTT---T--HHHHHHHHHHHH-HH-HHHTTCCHHHHHHHH
T ss_pred             E-EEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC--CCh---h--hhHHHHHHHHHH-HH-HHHCCCCHHHHHHHH
Confidence            4 4556778999999999999999976 666643  111   0  12222 222222 22 224599998877766

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.66  E-value=7.3e-16  Score=126.72  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      .+|||+|||+|.||.+++..|.+.|+    +|+++ +|++++.+.+.+.|+... +..++++++|+||+|+|++.+++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~  100 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF----KVVVG-SRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREHYSSLC  100 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGGSGGGG
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHHHHHHH
Confidence            45799999999999999999999998    99999 999999888877787765 6777889999999999998776665


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHH----------HHHcCCCcEEEEecCcccc------ccCcce-EeecCCCCCHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRW----------VEWTGHSRFIRVMPNTPSA------VGEAAT-VMSLGGTATEE  151 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l----------~~~l~~~~vv~~~p~~~~~------~~~g~~-~i~~~~~~~~~  151 (276)
                      . +..  ..++..+++..+|+ +.+.+          ++.+++.++++.+ |+...      ...+.+ .+..+  .+++
T Consensus       101 ~-l~~--~~~~~~vv~~s~g~-~~~~l~~~~~~~~~l~~~l~~~~vv~~~-n~~~~~~~~~~~~~g~~~~~~~g--~~~~  173 (215)
T 2vns_A          101 S-LSD--QLAGKILVDVSNPT-EQEHLQHRESNAEYLASLFPTCTVVKAF-NVISAWTLQAGPRDGNRQVPICG--DQPE  173 (215)
T ss_dssp             G-GHH--HHTTCEEEECCCCC-HHHHHHCSSCHHHHHHHHCTTSEEEEEC-TTBCHHHHHTCSCSSCCEEEEEE--SCHH
T ss_pred             H-HHH--hcCCCEEEEeCCCc-ccccccccccHHHHHHHHCCCCeEEecc-ccccHhHhcccccCCceeEEEec--CCHH
Confidence            4 310  00113344444666 54433          3667767888887 43211      111221 22222  3788


Q ss_pred             HHHHHHHHhhhcCce-EEcCC
Q 023866          152 DGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       152 ~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      ..+.++++|+.+|.. +++++
T Consensus       174 ~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          174 AKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             HHHHHHHHHHHTTCEEEECCS
T ss_pred             HHHHHHHHHHHcCCceEeecc
Confidence            999999999999976 77765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.65  E-value=1.7e-14  Score=131.56  Aligned_cols=190  Identities=17%  Similarity=0.098  Sum_probs=126.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-----------ceeccC
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-----------VKVLSD   64 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-----------~~~~~~   64 (276)
                      ++..+||+|||+|.||.+||..|.++|+    +|++| |+++++++.+.+           .|           ..++++
T Consensus        34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  108 (463)
T 1zcj_A           34 AQPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS  108 (463)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESC
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCC
Confidence            3567899999999999999999999999    99999 999988765432           11           234445


Q ss_pred             chhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceE
Q 023866           65 NNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATV  141 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~  141 (276)
                      . +.+++||+||+|||.+.  ..+++.++.. .+.++.-+++..+++ ++..+.+.+. ..+++..|+..|.....-+ .
T Consensus       109 ~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~-~~~~~~ii~snTs~~-~~~~la~~~~~~~~~ig~hf~~P~~~~~lv-e  184 (463)
T 1zcj_A          109 T-KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSAL-NVDDIASSTDRPQLVIGTHFFSPAHVMRLL-E  184 (463)
T ss_dssp             G-GGGTTCSEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEECCSSS-CHHHHHTTSSCGGGEEEEEECSSTTTCCEE-E
T ss_pred             H-HHHCCCCEEEEcCCCCHHHHHHHHHHHHh-hCCCCeEEEeCCCCc-CHHHHHHHhcCCcceEEeecCCCcccceeE-E
Confidence            5 56889999999998652  3566666621 111112233434667 7778887665 2578888887776654433 3


Q ss_pred             eecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866          142 MSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIF-LAIEALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       142 i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~-~~~~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                      ++.++.++++.++.+.++++.+|+. +++++.  .-+     ..+.++. .+.+++ . ..+.|++.++..+++.
T Consensus       185 vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~--~gf-----i~Nrll~~~~~ea~-~-l~~~G~~~~~id~~~~  250 (463)
T 1zcj_A          185 VIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC--YGF-----VGNRMLAPYYNQGF-F-LLEEGSKPEDVDGVLE  250 (463)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEEBCCS--TTT-----THHHHHHHHHHHHH-H-HHHTTCCHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhCCEEEEECCC--ccH-----HHHHHHHHHHHHHH-H-HHHcCCCHHHHHHHHH
Confidence            5567778999999999999999976 777652  111     0122211 112222 1 2345888888776664

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.64  E-value=1e-15  Score=126.10  Aligned_cols=147  Identities=12%  Similarity=0.035  Sum_probs=104.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      ..|||+|||+|+||++|+..|.++|+    +|++| +|.                  .+ +.+||  |+|||++.+.+++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~----~V~~~-~~~------------------~~-~~~aD--ilavP~~ai~~vl   58 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGH----YVTVL-HAP------------------ED-IRDFE--LVVIDAHGVEGYV   58 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTC----EEEEC-SSG------------------GG-GGGCS--EEEECSSCHHHHH
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCC----EEEEe-cCH------------------HH-hccCC--EEEEcHHHHHHHH
Confidence            45799999999999999999999999    99999 872                  12 56799  9999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-  166 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-  166 (276)
                      .++.. .+++ ..++...+|..+.+.++...+ +..++..||...     ....+...   +++..+.++++++.+|.. 
T Consensus        59 ~~l~~-~l~~-g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g-----~~~~i~a~---d~~a~~~l~~L~~~lG~~v  128 (232)
T 3dfu_A           59 EKLSA-FARR-GQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQ-----DRWVASAL---DELGETIVGLLVGELGGSI  128 (232)
T ss_dssp             HHHHT-TCCT-TCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEET-----TEEEEEES---SHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHH-hcCC-CCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCC-----CceeeeCC---CHHHHHHHHHHHHHhCCEE
Confidence            88831 1111 112222234324444444332 457777777632     12334433   677899999999999965 


Q ss_pred             EEcCCCCchhhhhhcCchHHHHHHH
Q 023866          167 WRADEKLFDAITGLSGSGPAYIFLA  191 (276)
Q Consensus       167 ~~~~e~~~~~~~a~~g~~p~~~~~~  191 (276)
                      +++++++++.+.|...+.|+.+...
T Consensus       129 v~~~~~~hd~~~AAvsh~nhLv~L~  153 (232)
T 3dfu_A          129 VEIADDKRAQLAAALTYAGFLSTLQ  153 (232)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHHhHHHHHHHHHHHHHHHH
Confidence            8899999999887777777665443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.63  E-value=3e-14  Score=136.19  Aligned_cols=187  Identities=14%  Similarity=0.015  Sum_probs=125.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~   63 (276)
                      +.++||+|||+|.||.+||..|.++|+    +|++| |+++++++...+           .|             ++.++
T Consensus       310 ~~~~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~  384 (725)
T 2wtb_A          310 RKIKKVAIIGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL  384 (725)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred             ccCcEEEEEcCCHhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence            456899999999999999999999999    99999 999988765421           22             34455


Q ss_pred             CchhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866           64 DNNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~  139 (276)
                      +. +.+++||+||+|||.+.  .++++.++.. .+.+ ..++ +..+++ ++..+.+.+. ..+++..|+..|.....- 
T Consensus       385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~-~~~~-~~IlasntStl-~i~~la~~~~~p~~~iG~hf~~P~~~~~l-  459 (725)
T 2wtb_A          385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEK-YCPQ-HCILASNTSTI-DLNKIGERTKSQDRIVGAHFFSPAHIMPL-  459 (725)
T ss_dssp             SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHH-HSCT-TCEEEECCSSS-CHHHHTTTCSCTTTEEEEEECSSTTTCCE-
T ss_pred             CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHh-hCCC-CcEEEeCCCCC-CHHHHHHHhcCCCCEEEecCCCCcccCce-
Confidence            56 56899999999998764  3566666621 1111 2233 444777 8888877664 247888887666654432 


Q ss_pred             eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Q 023866          140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~-~~~~~~l~~~~~~~Gl~~~~a~~~~  213 (276)
                      ..++.++.++++.++.+.++++.+|+. +++++.  .-+   .  .+.++ ..+.++ ... .+.|+++++..+++
T Consensus       460 vevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gf---i--~Nril~~~~~Ea-~~l-~~~G~~~e~id~~~  526 (725)
T 2wtb_A          460 LEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC--TGF---A--VNRMFFPYTQAA-MFL-VECGADPYLIDRAI  526 (725)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESS--TTT---T--HHHHHHHHHHHH-HHH-HHTTCCHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCC--ccH---H--HHHHHHHHHHHH-HHH-HHCCCCHHHHHHHH
Confidence            335567778999999999999999976 666653  111   0  12222 222222 222 24599998887776

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.63  E-value=1.2e-14  Score=125.91  Aligned_cols=244  Identities=14%  Similarity=0.102  Sum_probs=144.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC----------chhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD----------NNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~aDvI~lav   79 (276)
                      +|||+|||+|.||++++..|. +|+    +|++| +|++++.+.+++.|+.+..+          ..+....+|+||+||
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~----~V~~~-~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH----DVTVV-TRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC----ceEEE-ECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe
Confidence            379999999999999999999 998    99999 99999998888877654321          124567899999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCCCCcccH-HHHHHHcCCCcEEEEecCcccc---------ccCcceEeecCCCCC
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-SRWVEWTGHSRFIRVMPNTPSA---------VGEAATVMSLGGTAT  149 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~~l~~~~vv~~~p~~~~~---------~~~g~~~i~~~~~~~  149 (276)
                      |++++.++++++.  .+.+ ..+++-.+|+ .. +.+++++|..+++..+....+.         .+.|.+.+...++ .
T Consensus        76 K~~~~~~~l~~l~--~~~~-~~ivs~~nGi-~~~e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~-~  150 (307)
T 3ego_A           76 KQHQLQSVFSSLE--RIGK-TNILFLQNGM-GHIHDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDD-A  150 (307)
T ss_dssp             CGGGHHHHHHHTT--SSCC-CEEEECCSSS-HHHHHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTT-C
T ss_pred             CHHHHHHHHHHhh--cCCC-CeEEEecCCc-cHHHHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCC-C
Confidence            9999999999883  1211 1255556999 65 5788888866777665443332         1233333322111 1


Q ss_pred             HHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHH-------HHHHHHHHHHHHHHHcC-CCHHH
Q 023866          150 EEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA-------YIFLAIEALADGGVAAG-LPREL  208 (276)
Q Consensus       150 ~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~-------~~~~~~~~l~~~~~~~G-l~~~~  208 (276)
                      .+..+.+.+.|+..|..+...++             -++.++++.++...       +-..+...+.|...-.. .+++.
T Consensus       151 ~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~~~~  230 (307)
T 3ego_A          151 EPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLENEEK  230 (307)
T ss_dssp             CGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred             cHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccChHH
Confidence            34445555666666655666655             24566777665322       11122223333321111 12343


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHHH
Q 023866          209 ALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAKR  271 (276)
Q Consensus       209 a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~r  271 (276)
                      ..+.+.....      ......++++.|.. ..+-+-++.     ++.-++.|+...+.+.+...++.
T Consensus       231 ~~~~~~~~~~------~~~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~li~~  291 (307)
T 3ego_A          231 AWERVQAVCG------QTKENRSSMLVDVI-GGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSIKA  291 (307)
T ss_dssp             HHHHHHHHHH------HTTTCCCHHHHHHH-HTCCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH------hcCCCCchHHHHHH-cCCcccHHHhhhHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            3333322211      11223456666544 222333333     33346678888888877766543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.61  E-value=6.5e-14  Score=125.64  Aligned_cols=189  Identities=12%  Similarity=0.084  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc------------------CceeccCchhhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------------------GVKVLSDNNAVV   69 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~   69 (276)
                      +++|||+|||+|.||.++|..|.+ |+    +|++| ||++++++.+.+.                  ++..+++..+++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~----~V~~~-D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NH----EVVAL-DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CC----eEEEE-ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            457899999999999999999887 99    99999 9999999887651                  456677778889


Q ss_pred             cCCCEEEEeeCcc-----------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCCCcEEEEecCcccccc
Q 023866           70 EYSDVVVFSVKPQ-----------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGHSRFIRVMPNTPSAVG  136 (276)
Q Consensus        70 ~~aDvI~lav~~~-----------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~~~vv~~~p~~~~~~~  136 (276)
                      ++||+||+|||..           .+++++.++..  ++++..++. .+++  .+.+.+.+.+....+ ..-|   ...+
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~--l~~g~iVV~-~STv~pgtt~~l~~~l~~~~v-~~sP---e~~~  180 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE--INPNAVMII-KSTIPVGFTRDIKERLGIDNV-IFSP---EFLR  180 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH--HCTTSEEEE-CSCCCTTHHHHHHHHHTCCCE-EECC---CCCC
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh--cCCCcEEEE-eCCCChHHHHHHHHHHhhccE-eecC---ccCC
Confidence            9999999999865           46777777631  222222222 2444  123566666653333 3333   3333


Q ss_pred             Ccc---------eEeecCCCCCHHHHHHHHHHhhh--cCc--eEEcCCCCchhhhhhcCchHHHHHHHHHHHHH---HHH
Q 023866          137 EAA---------TVMSLGGTATEEDGELIGKLFGS--VGK--IWRADEKLFDAITGLSGSGPAYIFLAIEALAD---GGV  200 (276)
Q Consensus       137 ~g~---------~~i~~~~~~~~~~~~~v~~ll~~--~G~--~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~---~~~  200 (276)
                      .|.         .++.++   +++..+.+.++|..  ++.  .++.+.-.-...+.+.  .+.|.+..+..+.|   .+.
T Consensus       181 ~G~A~~~~l~p~rIvvG~---~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~--~N~~~a~~Ia~~nEl~~lae  255 (432)
T 3pid_A          181 EGRALYDNLHPSRIVIGE---RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLF--ANTYLALRVAYFNELDSYAE  255 (432)
T ss_dssp             TTSHHHHHHSCSCEEESS---CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCceEEecC---CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            331         234433   56778889999986  542  3444432222233332  24455544444444   467


Q ss_pred             HcCCCHHHHHHHHH
Q 023866          201 AAGLPRELALGLAS  214 (276)
Q Consensus       201 ~~Gl~~~~a~~~~~  214 (276)
                      +.|+|.++..+.+.
T Consensus       256 ~~GiD~~~v~~~~~  269 (432)
T 3pid_A          256 SQGLNSKQIIEGVC  269 (432)
T ss_dssp             HTTCCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHc
Confidence            99999998877664

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.60  E-value=3.1e-15  Score=122.39  Aligned_cols=135  Identities=11%  Similarity=0.138  Sum_probs=98.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      +.+||+|||+|+||++++..|.++|+    +|++| +|+++                  .+++||+||+|||++.+++++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~----~V~~~-~~~~~------------------~~~~aD~vi~av~~~~~~~v~   74 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH----EVTYY-GSKDQ------------------ATTLGEIVIMAVPYPALAALA   74 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCC------------------CSSCCSEEEECSCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHH------------------HhccCCEEEEcCCcHHHHHHH
Confidence            46899999999999999999999998    99999 99865                  467899999999999999998


Q ss_pred             HHHhhccccccCCcccCCCCccc---------------HHHHHHHcCCCcEEEE-----ecCccccccCc--ceE-eecC
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQR---------------WSRWVEWTGHSRFIRV-----MPNTPSAVGEA--ATV-MSLG  145 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~---------------~~~l~~~l~~~~vv~~-----~p~~~~~~~~g--~~~-i~~~  145 (276)
                      .++.. .+. +..+++..+|+ +               .+.+++.+++.++++.     +|+.+.....+  .+. ++.+
T Consensus        75 ~~l~~-~~~-~~~vi~~~~g~-~~~~~~~l~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g  151 (209)
T 2raf_A           75 KQYAT-QLK-GKIVVDITNPL-NFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG  151 (209)
T ss_dssp             HHTHH-HHT-TSEEEECCCCB-CTTTSSSBSSCTTCCHHHHHHHHCTTSEEEECSTTSCHHHHHHSEETTTEECEEEEEE
T ss_pred             HHHHH-hcC-CCEEEEECCCC-CccccccccCCCCCcHHHHHHHHCCCCcEEEeeecccHhhccccccCCCCCceeEEcC
Confidence            87731 111 13344444655 3               4678888887788885     55555443333  222 3333


Q ss_pred             CCCCHHHHHHHHHHhhhcCc-eEEcCC
Q 023866          146 GTATEEDGELIGKLFGSVGK-IWRADE  171 (276)
Q Consensus       146 ~~~~~~~~~~v~~ll~~~G~-~~~~~e  171 (276)
                        .+++..+.++++|+.+|. .+++++
T Consensus       152 --~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          152 --NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             --SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             --CCHHHHHHHHHHHHHcCCceEeCCC
Confidence              257889999999999995 466665

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.59  E-value=3.3e-14  Score=129.00  Aligned_cols=189  Identities=13%  Similarity=0.042  Sum_probs=120.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------c-CceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------I-GVKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~-g~~~~~~~~~~~~   70 (276)
                      |||+|||+|.||.++|..|.++|+    +|++| ||++++++.+.+                   . ++..+++..++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~   77 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA----NVRCI-DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP   77 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC----EEEEE-ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence            799999999999999999999999    99999 999999888765                   1 2456677788899


Q ss_pred             CCCEEEEeeCcc----------cHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHc----CC----C-cEEEEe
Q 023866           71 YSDVVVFSVKPQ----------VDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWT----GH----S-RFIRVM  128 (276)
Q Consensus        71 ~aDvI~lav~~~----------~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l----~~----~-~vv~~~  128 (276)
                      +||+||+|||..          .+++++.++.. .++++..++.. +++ ++   +.+.+.+    +.    . -.+..-
T Consensus        78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~-~l~~g~iVV~~-STv-~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~  154 (450)
T 3gg2_A           78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGR-AMSRYILIVTK-STV-PVGSYRLIRKAIQEELDKREVLIDFDIASN  154 (450)
T ss_dssp             GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHH-HCCSCEEEEEC-SCC-CTTHHHHHHHHHHHHHHHTTCCCCEEEEEC
T ss_pred             cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHh-hCCCCCEEEEe-eeC-CCcchHHHHHHHHHhccccCcCcceeEEec
Confidence            999999999866          78888888731 11111112221 444 22   3333222    11    1 122233


Q ss_pred             cCccccccCcc---------eEeecCCCCCHHHHHHHHHHhhhcCc---eEEcCCCCchhhhhhcCchHHHHHHHHHHHH
Q 023866          129 PNTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK---IWRADEKLFDAITGLSGSGPAYIFLAIEALA  196 (276)
Q Consensus       129 p~~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~G~---~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~  196 (276)
                      |...   .+|.         .++.++  .+++..+.++++|+.+++   .++.++-.-..++.+.  .+.+.+..+..+.
T Consensus       155 Pe~a---~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~--~N~~~a~~ia~~n  227 (450)
T 3gg2_A          155 PEFL---KEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYA--ANAMLATRISFMN  227 (450)
T ss_dssp             CCCC---CTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             hhhh---cccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            4322   2222         233333  257889999999999986   3544432222233332  2444444444444


Q ss_pred             H---HHHHcCCCHHHHHHHHH
Q 023866          197 D---GGVAAGLPRELALGLAS  214 (276)
Q Consensus       197 ~---~~~~~Gl~~~~a~~~~~  214 (276)
                      |   .+.+.|+|.++..+++.
T Consensus       228 E~~~l~~~~Gid~~~v~~~~~  248 (450)
T 3gg2_A          228 DVANLCERVGADVSMVRLGIG  248 (450)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHc
Confidence            4   46799999998887764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.58  E-value=9.5e-14  Score=125.51  Aligned_cols=191  Identities=12%  Similarity=0.054  Sum_probs=121.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------------CceeccCchhhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------------GVKVLSDNNAVV   69 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~   69 (276)
                      .-+|+|||+|.||.+||..|.++||    +|++| ||++++++.+.+.                    ++..+++..+++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~----~V~~~-D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH----EVVCV-DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            4689999999999999999999999    99999 9999999888751                    245677888889


Q ss_pred             cCCCEEEEeeCcc-----------cHHHHHHHHhhccccccCCcccCCCCcccH---HHHHH----HcCCC-cEEEEecC
Q 023866           70 EYSDVVVFSVKPQ-----------VDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVE----WTGHS-RFIRVMPN  130 (276)
Q Consensus        70 ~~aDvI~lav~~~-----------~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~----~l~~~-~vv~~~p~  130 (276)
                      ++||+||+|||..           .+++++.++.. .++++..++. .+++ ++   +.+.+    ..++. -.+..-|.
T Consensus        83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~-~l~~g~iVV~-~STv-~pgtt~~l~~~l~e~~~~~d~~v~~~Pe  159 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAE-NLTKPSVIVT-KSTV-PVGTGDEVERIIAEVAPNSGAKVVSNPE  159 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHH-SCCSCCEEEE-CSCC-CTTHHHHHHHHHHHHSTTSCCEEEECCC
T ss_pred             hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHH-hcCCCCEEEE-eCCC-CchHHHHHHHHHHHhCCCCCceEEeCcc
Confidence            9999999998633           38888888731 1222122222 2455 32   33332    22211 12223343


Q ss_pred             ccccccCcc---------eEeecCCCCCHHHHHHHHHHhhhcCc----eEEcCCCCchhhhhhcCchHHHHHHHHHHHHH
Q 023866          131 TPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK----IWRADEKLFDAITGLSGSGPAYIFLAIEALAD  197 (276)
Q Consensus       131 ~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~G~----~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~  197 (276)
                      ..   .+|.         .++.++  .+++..+.++++|+.+++    .++.++-.-..++.+.  .+.|.+..+..+.|
T Consensus       160 ~a---~eG~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~--~N~~~a~~ia~~nE  232 (446)
T 4a7p_A          160 FL---REGAAIEDFKRPDRVVVGT--EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYA--ANAFLAVKITFINE  232 (446)
T ss_dssp             CC---CTTSHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             cc---cccchhhhccCCCEEEEeC--CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            32   2232         234433  257889999999999985    2454432222233332  24455554444444


Q ss_pred             H---HHHcCCCHHHHHHHHHH
Q 023866          198 G---GVAAGLPRELALGLASQ  215 (276)
Q Consensus       198 ~---~~~~Gl~~~~a~~~~~~  215 (276)
                      .   +.+.|+|.++..+++..
T Consensus       233 ~~~l~~~~GiD~~~v~~~~~~  253 (446)
T 4a7p_A          233 IADLCEQVGADVQEVSRGIGM  253 (446)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHhc
Confidence            4   67999999988877653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.55  E-value=6.8e-14  Score=126.78  Aligned_cols=191  Identities=11%  Similarity=0.107  Sum_probs=117.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~   70 (276)
                      |||+|||+|.||.+++..|.++|+    +|++| ||++++++.+.+                   .| +..+++..++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            689999999999999999999999    99999 999999988875                   23 555667777889


Q ss_pred             CCCEEEEeeCcc-c---------HHHHHHHHhhccccc---cCCcccCCCCc--c-cHHHHHHHcCC---C-----cEEE
Q 023866           71 YSDVVVFSVKPQ-V---------DKAAVITEEAFGFCC---CRSEIERPSGL--Q-RWSRWVEWTGH---S-----RFIR  126 (276)
Q Consensus        71 ~aDvI~lav~~~-~---------~~~vl~~~~~~~~~~---~~~~l~~~~g~--~-~~~~l~~~l~~---~-----~vv~  126 (276)
                      +||+||+|||.. .         +++++.++.. .+.+   +..++.. +++  . +.+.+.+.++.   .     -.+.
T Consensus        76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~-~l~~~~~~~iVV~~-Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~  153 (436)
T 1mv8_A           76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGF-AIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAGVDFGVG  153 (436)
T ss_dssp             TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHH-HHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred             cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHH-HhcccCCCcEEEEe-CCcCCCchHHHHHHHHHHhcCcccCCcEEEE
Confidence            999999999754 3         8888877731 1111   1222321 222  1 23445444321   1     1122


Q ss_pred             EecCccccccCcce--------EeecCCCCCHHHHHHHHHHhhhcCceEEcCCCCchhhhhhcCchHHHHHH---HHHHH
Q 023866          127 VMPNTPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL---AIEAL  195 (276)
Q Consensus       127 ~~p~~~~~~~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~~p~~~~~---~~~~l  195 (276)
                      ..|.   ....|..        .++.+. .+++..+.+.++|+.+|..++.++-.......+.  .+.|...   ++..+
T Consensus       154 ~~Pe---~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~--~N~~~a~~ia~~nE~  227 (436)
T 1mv8_A          154 TNPE---FLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYT--CNVWHAAKVTFANEI  227 (436)
T ss_dssp             ECCC---CCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSCEEEEEHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             ECcc---cccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            2332   2233321        222222 2578889999999999975444332222222322  2344332   34444


Q ss_pred             HHHHHHcCCCHHHHHHHHH
Q 023866          196 ADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       196 ~~~~~~~Gl~~~~a~~~~~  214 (276)
                      ...+.+.|++.++..+++.
T Consensus       228 ~~l~~~~Gid~~~v~~~~~  246 (436)
T 1mv8_A          228 GNIAKAVGVDGREVMDVIC  246 (436)
T ss_dssp             HHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHhc
Confidence            5556789999887766654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.55  E-value=9.9e-14  Score=126.72  Aligned_cols=196  Identities=15%  Similarity=0.140  Sum_probs=116.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHH-------------------cCceeccCchh
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNA   67 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~   67 (276)
                      ++|||+|||+|.||.+++..|.++  |+    +|++| ||++++++.+++                   .++..+++..+
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~----~V~~~-d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e   78 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHMCPEI----RVTVV-DVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDD   78 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHH
Confidence            468999999999999999999998  78    99999 999999887542                   24566667778


Q ss_pred             hhcCCCEEEEeeCc-cc--------------HHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCC--C-c-EEE
Q 023866           68 VVEYSDVVVFSVKP-QV--------------DKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGH--S-R-FIR  126 (276)
Q Consensus        68 ~~~~aDvI~lav~~-~~--------------~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~--~-~-vv~  126 (276)
                      ++++||+||+|||. ..              +.+++.++.. .+.++..++.. +++  .+.+.+.+.+..  . . -..
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~~-STv~~g~~~~l~~~l~~~~~~~~d~~  156 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQ-NSNGYKIVTEK-STVPVRAAESIRRIFDANTKPNLNLQ  156 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHH-TCCSEEEEEEC-SCCCTTHHHHHHHHHHHTCCTTCEEE
T ss_pred             HHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHh-hCCCCCEEEEC-CcCCchHHHHHHHHHHHhCCCCCCeE
Confidence            88999999999963 32              4566666621 11111222221 222  123445554431  1 1 111


Q ss_pred             EecCccccccCcce---------EeecCCC--CCHHHHHHHHHHhhhc-Cc-eEEcCCCCchhhhhhcCchHHHHHHHHH
Q 023866          127 VMPNTPSAVGEAAT---------VMSLGGT--ATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGSGPAYIFLAIE  193 (276)
Q Consensus       127 ~~p~~~~~~~~g~~---------~i~~~~~--~~~~~~~~v~~ll~~~-G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~  193 (276)
                      +. ..|.....|..         ++..++.  .+++..+.++++|+.+ |. .++.++-.......+.  .+.+.+..+.
T Consensus       157 V~-~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~--~N~~~a~~ia  233 (467)
T 2q3e_A          157 VL-SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLA--ANAFLAQRIS  233 (467)
T ss_dssp             EE-ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHH--HHHHHHHHHH
T ss_pred             EE-eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHH--HHHHHHHHHH
Confidence            11 22333344432         3333321  2577889999999999 74 4555442222222222  1334333333


Q ss_pred             HH---HHHHHHcCCCHHHHHHHHH
Q 023866          194 AL---ADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       194 ~l---~~~~~~~Gl~~~~a~~~~~  214 (276)
                      .+   ...+.+.|++.++..+++.
T Consensus       234 ~~nE~~~l~~~~Gid~~~v~~~~~  257 (467)
T 2q3e_A          234 SINSISALCEATGADVEEVATAIG  257 (467)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHc
Confidence            33   3346789999998877654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.54  E-value=9.4e-13  Score=113.68  Aligned_cols=151  Identities=15%  Similarity=0.060  Sum_probs=113.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-----------HcC--------------ceeccC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG--------------VKVLSD   64 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g--------------~~~~~~   64 (276)
                      ..||+|||+|.||+.||..+..+|+    +|+++ |++++.++...           +.|              +..+++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~   80 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF----RVKLY-DIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN   80 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence            4689999999999999999999999    99999 99998654322           111              233456


Q ss_pred             chhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~  140 (276)
                      ..+++++||+|+-||+-. .+ ++++.++.  ...+...++ +..+++ ++..+.+.+.+ .+++.+||-.|...-.-+.
T Consensus        81 l~~a~~~ad~ViEav~E~l~iK~~lf~~l~--~~~~~~aIlaSNTSsl-~is~ia~~~~~p~r~ig~HffNP~~~m~LVE  157 (319)
T 3ado_A           81 LAEAVEGVVHIQECVPENLDLKRKIFAQLD--SIVDDRVVLSSSSSCL-LPSKLFTGLAHVKQCIVAHPVNPPYYIPLVE  157 (319)
T ss_dssp             HHHHTTTEEEEEECCCSCHHHHHHHHHHHH--TTCCSSSEEEECCSSC-CHHHHHTTCTTGGGEEEEEECSSTTTCCEEE
T ss_pred             hHhHhccCcEEeeccccHHHHHHHHHHHHH--HHhhhcceeehhhhhc-cchhhhhhccCCCcEEEecCCCCccccchHH
Confidence            678899999999999854 34 58888883  222222333 344888 89999887763 6899999887776654444


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRA  169 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~  169 (276)
                       ++.++.++++.++.+..+++.+|+. +++
T Consensus       158 -iv~g~~Ts~~~~~~~~~~~~~~gk~pv~v  186 (319)
T 3ado_A          158 -LVPHPETSPATVDRTHALMRKIGQSPVRV  186 (319)
T ss_dssp             -EEECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             -hcCCCCCcHHHHHHHHHHHHHhCCccCCc
Confidence             4567889999999999999999975 545

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.50  E-value=3.2e-13  Score=123.70  Aligned_cols=196  Identities=12%  Similarity=0.056  Sum_probs=116.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHc-------------------CceeccCc
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDN   65 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~   65 (276)
                      ++.+|||+|||+|.||.++|..|.++  |+    +|++| ||++++++.+.+.                   ++..+++.
T Consensus         6 ~~~~mkI~VIG~G~vG~~~A~~La~~g~g~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~   80 (481)
T 2o3j_A            6 FGKVSKVVCVGAGYVGGPTCAMIAHKCPHI----TVTVV-DMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDI   80 (481)
T ss_dssp             SCCCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence            45578999999999999999999998  68    99999 9999999888651                   23445566


Q ss_pred             hhhhcCCCEEEEeeCcc---------------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCC-Cc----
Q 023866           66 NAVVEYSDVVVFSVKPQ---------------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGH-SR----  123 (276)
Q Consensus        66 ~~~~~~aDvI~lav~~~---------------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~-~~----  123 (276)
                      .+++++||+||+|||..               .+.+++.++.. .++++..++. .+++  .+.+.+.+.+.. ..    
T Consensus        81 ~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~~~~~  158 (481)
T 2o3j_A           81 PKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQ-YAGGPKIVVE-KSTVPVKAAESIGCILREAQKNNEN  158 (481)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHH-HCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC----
T ss_pred             HHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHH-hCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhCcCcC
Confidence            67788999999998642               27777777621 1111122222 1333  112444443321 11    


Q ss_pred             ---EEEEecCccccccCcc---------eEeecCCCC--CHHHHHHHHHHhhhcCc--eEEcCCCCchhhhhhcCchHHH
Q 023866          124 ---FIRVMPNTPSAVGEAA---------TVMSLGGTA--TEEDGELIGKLFGSVGK--IWRADEKLFDAITGLSGSGPAY  187 (276)
Q Consensus       124 ---vv~~~p~~~~~~~~g~---------~~i~~~~~~--~~~~~~~v~~ll~~~G~--~~~~~e~~~~~~~a~~g~~p~~  187 (276)
                         .+...|..   .+.|.         .++..+...  .++..+.++++|+.++.  .++.++-.-..+..+.  .+.+
T Consensus       159 ~d~~v~~~Pe~---~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~--~N~~  233 (481)
T 2o3j_A          159 LKFQVLSNPEF---LAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLV--ANAF  233 (481)
T ss_dssp             CCEEEEECCCC---CCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHH--HHHH
T ss_pred             CceEEEeCccc---ccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHH--HHHH
Confidence               13334432   22221         233333211  12577899999999985  3554432222233332  1333


Q ss_pred             HHHHH---HHHHHHHHHcCCCHHHHHHHHH
Q 023866          188 IFLAI---EALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       188 ~~~~~---~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                      .+..+   ..+...+.+.|++.++..+.+.
T Consensus       234 ~a~~ia~~nE~~~la~~~Gid~~~v~~~~~  263 (481)
T 2o3j_A          234 LAQRISSINSISAVCEATGAEISEVAHAVG  263 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            33333   3334446789999998877665

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.50  E-value=3.9e-13  Score=122.84  Aligned_cols=189  Identities=17%  Similarity=0.115  Sum_probs=115.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-------C-------------ceeccCchhhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------G-------------VKVLSDNNAVV   69 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g-------------~~~~~~~~~~~   69 (276)
                      .|||+|||+|.||.++|..|.++|+    +|++| ||++++++.+.+.       |             +..+++..+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~----~V~~~-d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~   82 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH----DVFCL-DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV   82 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh
Confidence            5899999999999999999999999    99999 9999999988763       2             34556666778


Q ss_pred             cCCCEEEEeeCc----------ccHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC-----C---Cc-EEEE
Q 023866           70 EYSDVVVFSVKP----------QVDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG-----H---SR-FIRV  127 (276)
Q Consensus        70 ~~aDvI~lav~~----------~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~-----~---~~-vv~~  127 (276)
                      ++||+||+|||.          +.+++++.++.. .++++..++. .+++ ++   +.+.+.+.     +   .. .+-.
T Consensus        83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~-~l~~~~iVV~-~STv-~~gt~~~l~~~l~~~~~~g~~~~~~~v~~  159 (478)
T 2y0c_A           83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGR-YMTGFKVIVD-KSTV-PVGTAERVRAAVAEELAKRGGDQMFSVVS  159 (478)
T ss_dssp             HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHH-HCCSCEEEEE-CSCC-CTTHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHH-hcCCCCEEEE-eCCc-CCCchHHHHHHHHHHhcCCCCCccEEEEE
Confidence            899999999986          788888887731 1111112222 2554 32   33333221     1   11 1222


Q ss_pred             ecCccccccCcc---------eEeecCCCCCH----HHHHHHHHHhhhcCc---eEEcCCCCchhhhhhcCchHHHHHH-
Q 023866          128 MPNTPSAVGEAA---------TVMSLGGTATE----EDGELIGKLFGSVGK---IWRADEKLFDAITGLSGSGPAYIFL-  190 (276)
Q Consensus       128 ~p~~~~~~~~g~---------~~i~~~~~~~~----~~~~~v~~ll~~~G~---~~~~~e~~~~~~~a~~g~~p~~~~~-  190 (276)
                      -|..   ...|.         .++..+.  ++    +..+.+.++|+.+++   .+..+.-.-..+..+.  .+.+.+. 
T Consensus       160 ~Pe~---~~eG~~~~~~~~p~~iviG~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~--~N~~~a~~  232 (478)
T 2y0c_A          160 NPEF---LKEGAAVDDFTRPDRIVIGCD--DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYA--ANAMLATR  232 (478)
T ss_dssp             CCCC---CCTTCHHHHHHSCSCEEEECC--SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHH--HHHHHHHH
T ss_pred             Chhh---hcccceeeccCCCCEEEEEEC--CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHH--HHHHHHHH
Confidence            3332   22222         2333332  34    678899999998874   3444432111222222  1334333 


Q ss_pred             --HHHHHHHHHHHcCCCHHHHHHHH
Q 023866          191 --AIEALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       191 --~~~~l~~~~~~~Gl~~~~a~~~~  213 (276)
                        ++..+...+.+.|++.++..+.+
T Consensus       233 ia~~nE~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          233 ISFMNELANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence              33344445679999998766544

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.48  E-value=1.3e-12  Score=117.17  Aligned_cols=190  Identities=13%  Similarity=0.061  Sum_probs=116.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc------------------eeccCchhhhcCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV------------------KVLSDNNAVVEYS   72 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~a   72 (276)
                      |||+|||+|.||.+++..|.+ |+    +|++| ||++++++.+.+.+.                  ..+++..+++++|
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CC----EEEEE-ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCC
Confidence            689999999999999999998 98    99999 999999998876543                  3445566778899


Q ss_pred             CEEEEeeCcc-----------cHHHHHHHHhhccccccCCccc-CCCCcccHHHHHHHcCCCcEEEEecCccccccCcc-
Q 023866           73 DVVVFSVKPQ-----------VDKAAVITEEAFGFCCCRSEIE-RPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAA-  139 (276)
Q Consensus        73 DvI~lav~~~-----------~~~~vl~~~~~~~~~~~~~~l~-~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~-  139 (276)
                      |+||+|||++           .+.+++.++..  +.++..++. ..++..+.+.+.+.++...++ ..|.   ....|. 
T Consensus        75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~--l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~-~~Pe---~~~~G~a  148 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLS--VNSHATLIIKSTIPIGFITEMRQKFQTDRII-FSPE---FLRESKA  148 (402)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHHHHHHH--HCSSCEEEECSCCCTTHHHHHHHHTTCSCEE-ECCC---CCCTTST
T ss_pred             CEEEEecCCCcccCCCCccHHHHHHHHHHHHh--hCCCCEEEEeCCCCccHHHHHHHHhCCCeEE-ECCc---cccCcch
Confidence            9999999876           48888887732  222222332 234443456777777643333 3343   122221 


Q ss_pred             --------eEeecCCCCC----HHHHHHHHHHhhh-cCc---eEEcCCCCchhhhhhcCchHHHHHH---HHHHHHHHHH
Q 023866          140 --------TVMSLGGTAT----EEDGELIGKLFGS-VGK---IWRADEKLFDAITGLSGSGPAYIFL---AIEALADGGV  200 (276)
Q Consensus       140 --------~~i~~~~~~~----~~~~~~v~~ll~~-~G~---~~~~~e~~~~~~~a~~g~~p~~~~~---~~~~l~~~~~  200 (276)
                              .++..+....    .+..+.+.++|.. ...   .++.+.-.-.....+.  .+.+.+.   ++..+...+.
T Consensus       149 ~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~--~N~~~a~~ia~~nE~~~l~~  226 (402)
T 1dlj_A          149 LYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLF--ANTYLALRVAYFNELDTYAE  226 (402)
T ss_dssp             THHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence                    1333332111    1556778888865 332   3444332112222221  1333332   2333444567


Q ss_pred             HcCCCHHHHHHHHH
Q 023866          201 AAGLPRELALGLAS  214 (276)
Q Consensus       201 ~~Gl~~~~a~~~~~  214 (276)
                      +.|+|.++..+.+.
T Consensus       227 ~~Gid~~~v~~~~~  240 (402)
T 1dlj_A          227 SRKLNSHMIIQGIS  240 (402)
T ss_dssp             HTTCCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHhc
Confidence            99999998877664

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.48  E-value=1.6e-13  Score=120.98  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-Cc--------------eeccCchhhhcCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GV--------------KVLSDNNAVVEYS   72 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~a   72 (276)
                      |++|||+|||+|.||..++..|.++|+    +|++| +|++++.+.+.+. ++              ..+.+..++++++
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA   76 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcC
Confidence            556899999999999999999999998    99999 9999999888774 33              2345666778899


Q ss_pred             CEEEEeeCcccHHHHHHHH
Q 023866           73 DVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        73 DvI~lav~~~~~~~vl~~~   91 (276)
                      |+||+|||++...+++.++
T Consensus        77 D~vi~~v~~~~~~~~~~~l   95 (359)
T 1bg6_A           77 DVILIVVPAIHHASIAANI   95 (359)
T ss_dssp             SEEEECSCGGGHHHHHHHH
T ss_pred             CEEEEeCCchHHHHHHHHH
Confidence            9999999999999999887

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.44  E-value=6.7e-12  Score=114.17  Aligned_cols=191  Identities=14%  Similarity=0.065  Sum_probs=115.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHH----HHHHHHH---------------------cC-ce
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK----RRDAFES---------------------IG-VK   60 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~----~~~~l~~---------------------~g-~~   60 (276)
                      +.+|||+|||+|.||.+||..|.++ |+   .+|++| ||+++    +++.+.+                     .| +.
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~---~~V~~~-D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~   91 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCF---EKVLGF-QRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE   91 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTC---CEEEEE-CCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCC---CeEEEE-ECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE
Confidence            4578999999999999999999999 86   189999 99999    8887764                     12 33


Q ss_pred             eccCchhhhcCCCEEEEeeCcc---------c---HHHHHHHHhhccccccCCcccCCCCcccH---HHHH-----HHcC
Q 023866           61 VLSDNNAVVEYSDVVVFSVKPQ---------V---DKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWV-----EWTG  120 (276)
Q Consensus        61 ~~~~~~~~~~~aDvI~lav~~~---------~---~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~-----~~l~  120 (276)
                      .+++ .+++++||+||+|||..         +   +..+..++.. .++++.-++. .+++ ++   +.+.     +..+
T Consensus        92 ~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~-~STv-~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           92 CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK-YLKPGMLVVL-ESTI-TPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH-HCCTTCEEEE-CSCC-CTTTTTTHHHHHHHHHHC
T ss_pred             EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh-hcCCCcEEEE-eCCC-ChHHHHHHHHHHHHHhcC
Confidence            4444 67889999999999743         2   4555555521 1111122221 1444 22   2222     2222


Q ss_pred             C---Cc-EEEEecCccccccCcc---------eEeecCCCCCHHHHHHHHHHhhhc-Cc-eEEcCCCCchhhhhhcCchH
Q 023866          121 H---SR-FIRVMPNTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGSGP  185 (276)
Q Consensus       121 ~---~~-vv~~~p~~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~-G~-~~~~~e~~~~~~~a~~g~~p  185 (276)
                      .   .. .+-.-|..   ...|.         .++. |  .+++..+.++++|+.+ +. .+++++-.-..++.+.  .+
T Consensus       168 ~~~~~d~~v~~~Pe~---~~~G~a~~~~~~~~~Iv~-G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~--~N  239 (478)
T 3g79_A          168 LKAGEDFALAHAPER---VMVGRLLKNIREHDRIVG-G--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTA--EN  239 (478)
T ss_dssp             CCBTTTBEEEECCCC---CCTTSHHHHHHHSCEEEE-E--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHH--HH
T ss_pred             CCcCCceeEEeCCcc---CCccchhhhhcCCcEEEE-e--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHH--HH
Confidence            1   11 12223432   22221         2333 3  3788889999999999 65 4666543222333332  24


Q ss_pred             HHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 023866          186 AYIFLAIEALADG---GVAAGLPRELALGLAS  214 (276)
Q Consensus       186 ~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~  214 (276)
                      .|.+..+..+.|.   +.+.|+|.++..+.+.
T Consensus       240 ~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~  271 (478)
T 3g79_A          240 TFRDLQIAAINQLALYCEAMGINVYDVRTGVD  271 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence            4555444444444   6799999998887754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.41  E-value=3.5e-12  Score=114.54  Aligned_cols=186  Identities=16%  Similarity=0.078  Sum_probs=112.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC--------------------ceeccCchhhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------------VKVLSDNNAVV   69 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~   69 (276)
                      ..|+.|||+|.||.+||..|.++||    +|++| ||++++++.+.+..                    +..+++    +
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~----~V~~~-D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~   81 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGV----DVLGV-DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----P   81 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----C
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----h
Confidence            4689999999999999999999999    99999 99999999887621                    222222    4


Q ss_pred             cCCCEEEEeeCccc------------HHHHHHHHhhccccccCCcccCCCCcccH---HHHHHH----cCC---Cc-EEE
Q 023866           70 EYSDVVVFSVKPQV------------DKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEW----TGH---SR-FIR  126 (276)
Q Consensus        70 ~~aDvI~lav~~~~------------~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~----l~~---~~-vv~  126 (276)
                      ++||+||+|||...            +..+..++.. .++++. ++-..+++ ++   +++.+.    .+.   .. .+-
T Consensus        82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~-~l~~g~-iVV~~STV-~pgtt~~v~~~i~e~~g~~~~~d~~v~  158 (431)
T 3ojo_A           82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILP-FLKKGN-TIIVESTI-APKTMDDFVKPVIENLGFTIGEDIYLV  158 (431)
T ss_dssp             CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGG-GCCTTE-EEEECSCC-CTTHHHHTHHHHHHTTTCCBTTTEEEE
T ss_pred             hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHH-hCCCCC-EEEEecCC-ChhHHHHHHHHHHHHcCCCcCCCeEEE
Confidence            58999999997442            5666666621 111111 11112555 33   233221    121   11 122


Q ss_pred             EecCccccccCcc--------eEeecCCCCCHHHHHHHHHHhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHH
Q 023866          127 VMPNTPSAVGEAA--------TVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALAD  197 (276)
Q Consensus       127 ~~p~~~~~~~~g~--------~~i~~~~~~~~~~~~~v~~ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~  197 (276)
                      .-|.   ....|.        +.+..+  .+++..+.++++|+.++. .+++++-.-..++.+.  .+.|.+..+..+.|
T Consensus       159 ~~Pe---~~~~G~A~~~~~~p~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~--~N~~~a~~Ia~~nE  231 (431)
T 3ojo_A          159 HCPE---RVLPGKILEELVHNNRIIGG--VTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLM--ENTYRDVNIALANE  231 (431)
T ss_dssp             ECCC---CCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             ECCC---cCCCcchhhcccCCCEEEEe--CCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            2232   222221        123333  268899999999999996 4665543223333332  24455544444434


Q ss_pred             ---HHHHcCCCHHHHHHHHH
Q 023866          198 ---GGVAAGLPRELALGLAS  214 (276)
Q Consensus       198 ---~~~~~Gl~~~~a~~~~~  214 (276)
                         .+.+.|+|.++..+.+.
T Consensus       232 ~~~l~e~~GiD~~~v~~~~~  251 (431)
T 3ojo_A          232 LTKICNNLNINVLDVIEMAN  251 (431)
T ss_dssp             HHHHHHHTTCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHc
Confidence               46799999998877654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.40  E-value=3.2e-13  Score=116.09  Aligned_cols=242  Identities=10%  Similarity=0.000  Sum_probs=134.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc---eeccCchhhh-cCCCEEEEeeCcccHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---KVLSDNNAVV-EYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~---~~~~~~~~~~-~~aDvI~lav~~~~~~~   86 (276)
                      |||+|||+|.||++++..|.++|+    +|++| +|+++.++.....|.   .+..++.+.+ .++|+||+|||++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~   77 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP----HTTLI-GRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDA   77 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT----TCEEE-ESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHH
Confidence            799999999999999999999998    99999 998765432212332   2333445544 78999999999999999


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCc------cccccCcceEeecCCCCCHHHHHHHHHHh
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNT------PSAVGEAATVMSLGGTATEEDGELIGKLF  160 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~------~~~~~~g~~~i~~~~~~~~~~~~~v~~ll  160 (276)
                      ++.++.. -+.++..+++-.+|+ ...+.   ++..+++......      |..+..+...+..+   +.+..+.+.++|
T Consensus        78 ~l~~l~~-~l~~~~~iv~~~nGi-~~~~~---~~~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~---~~~~~~~l~~~l  149 (294)
T 3g17_A           78 VIPHLTY-LAHEDTLIILAQNGY-GQLEH---IPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQ---DNALTRQFRDLV  149 (294)
T ss_dssp             HGGGHHH-HEEEEEEEEECCSSC-CCGGG---CCCSCEEECEEEEEEEEETTEEEEEEEEEEEEE---CSHHHHHHHHHT
T ss_pred             HHHHHHH-hhCCCCEEEEeccCc-ccHhh---CCCCcEEEEEEEEEEEEcCCCEEEECCCEEecC---ccHHHHHHHHHH
Confidence            9988821 011112334444888 54433   6654554433221      11111111122222   346678889999


Q ss_pred             hhcCceEEcCCCC---------chh---hhhhcCch-------HHHHHHHHHHH---HHHHHHcCCCH--HHHHHHHHHH
Q 023866          161 GSVGKIWRADEKL---------FDA---ITGLSGSG-------PAYIFLAIEAL---ADGGVAAGLPR--ELALGLASQT  216 (276)
Q Consensus       161 ~~~G~~~~~~e~~---------~~~---~~a~~g~~-------p~~~~~~~~~l---~~~~~~~Gl~~--~~a~~~~~~~  216 (276)
                      +.-|..++.+++.         ++.   ++++.++.       |.+...+...+   ...+.+.|++.  +...+++.  
T Consensus       150 ~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~--  227 (294)
T 3g17_A          150 QDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMT--  227 (294)
T ss_dssp             TTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH--
T ss_pred             HhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence            9888766655541         222   33443331       22222222233   33355777653  22222221  


Q ss_pred             HHHHHHHHHhcCCChHHHHHhcCCCCch-----HHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 023866          217 VLGAASMVTKSGKHPGQLKDDVASPGGT-----TIAGIHELEKSGFRGILMNAVVAAAKRS  272 (276)
Q Consensus       217 ~~g~~~~~~~~~~~~~~l~~~v~sp~g~-----t~~~l~~l~~~~~~~~~~~a~~~~~~r~  272 (276)
                        ...+.  .....+.++.|.. ..+-+     +-.-++.-++.|+...+.+.+.+.++..
T Consensus       228 --~~~~~--~~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~~  283 (294)
T 3g17_A          228 --IYQGY--PDEMGTSMYYDIV-HQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAY  283 (294)
T ss_dssp             --HHHTS--CTTCCCHHHHHHH-TTCCCSGGGTHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             --HHhhc--CCCCCCcHHHHHH-cCCCccHHHhhhHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence              11110  1122355555543 22222     2233444567788888888877766544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.26  E-value=1.2e-09  Score=104.36  Aligned_cols=154  Identities=19%  Similarity=0.162  Sum_probs=113.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---------------c-------CceeccCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------------I-------GVKVLSDN   65 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---------------~-------g~~~~~~~   65 (276)
                      +...||||||+|.||..||..+..+|+    +|+++ |++++.++...+               .       .+..+++ 
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-  387 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS-  387 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC-
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhCCC----chhcc-cchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc-
Confidence            457899999999999999999999999    99999 999987554321               0       1223333 


Q ss_pred             hhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceE
Q 023866           66 NAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATV  141 (276)
Q Consensus        66 ~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~  141 (276)
                      .+.+.+||+||-||+-. .+ .+++.++.+  ..+...++ +..+++ ++..|.+.+. ..+++.+|+-.|...-.-+. 
T Consensus       388 ~~~l~~aDlVIEAV~E~l~iK~~vf~~le~--~~~~~aIlASNTSsl-~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVE-  463 (742)
T 3zwc_A          388 TKELSTVDLVVEAVFEDMNLKKKVFAELSA--LCKPGAFLCTNTSAL-NVDDIASSTDRPQLVIGTHFFSPAHVMRLLE-  463 (742)
T ss_dssp             GGGGGSCSEEEECCCSCHHHHHHHHHHHHH--HSCTTCEEEECCSSS-CHHHHHTTSSCGGGEEEEECCSSTTTCCEEE-
T ss_pred             HHHHhhCCEEEEeccccHHHHHHHHHHHhh--cCCCCceEEecCCcC-ChHHHHhhcCCccccccccccCCCCCCceEE-
Confidence            34578999999999744 33 477777731  12222334 344888 9999988765 36899999887776655444 


Q ss_pred             eecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          142 MSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       142 i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      +..++.++++.++.+.++.+.+|+. +++.+
T Consensus       464 vi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd  494 (742)
T 3zwc_A          464 VIPSRYSSPTTIATVMSLSKKIGKIGVVVGN  494 (742)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             EecCCCCCHHHHHHHHHHHHHhCCCCcccCC
Confidence            4457789999999999999999987 66654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.16  E-value=6.4e-10  Score=98.36  Aligned_cols=160  Identities=16%  Similarity=0.044  Sum_probs=98.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCC----CCCeEEEEeCCCHHH-----HHHHHH--------------cCceeccCchh
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVL----PPDRICTAVHSNLKR-----RDAFES--------------IGVKVLSDNNA   67 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~----~~~~V~v~~~r~~~~-----~~~l~~--------------~g~~~~~~~~~   67 (276)
                      .||+|||+|.+|++||..|.+.|+-    ...+|++| .|+++.     .+.+..              .++..++|..+
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw-~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~  113 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMW-VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID  113 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEE-CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEE-EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence            5999999999999999999987640    01259999 887652     333332              13456678889


Q ss_pred             hhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcc--------cHHHHHHHcCCCcEEEEecCccccccCcc
Q 023866           68 VVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQ--------RWSRWVEWTGHSRFIRVMPNTPSAVGEAA  139 (276)
Q Consensus        68 ~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~--------~~~~l~~~l~~~~vv~~~p~~~~~~~~g~  139 (276)
                      +++++|+||++||.+.+++++.++.. -+.++.++++...|+.        -.+.+.+.++..-.+-.-|+++.++..+.
T Consensus       114 al~~ad~ii~avPs~~~r~~l~~l~~-~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A~EVa~~~  192 (391)
T 4fgw_A          114 SVKDVDIIVFNIPHQFLPRICSQLKG-HVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIATEVAQEH  192 (391)
T ss_dssp             HHTTCSEEEECSCGGGHHHHHHHHTT-TSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCHHHHHTTC
T ss_pred             HHhcCCEEEEECChhhhHHHHHHhcc-ccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchHHHhhcCC
Confidence            99999999999999999999999821 0111122333225551        12445555552222334588888876653


Q ss_pred             -eEee-cCCC-------CCHHHHHHHHHHhhhcCceEEcCCC
Q 023866          140 -TVMS-LGGT-------ATEEDGELIGKLFGSVGKIWRADEK  172 (276)
Q Consensus       140 -~~i~-~~~~-------~~~~~~~~v~~ll~~~G~~~~~~e~  172 (276)
                       +.++ ....       .++...+.++.+|..=-..++.++|
T Consensus       193 pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~D  234 (391)
T 4fgw_A          193 WSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIED  234 (391)
T ss_dssp             CEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESC
T ss_pred             CceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCC
Confidence             2222 1110       1122346678888654444555555

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.13  E-value=1.2e-10  Score=104.44  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeC---CCHHHHHHH-HHcC------------c-------eeccCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVH---SNLKRRDAF-ESIG------------V-------KVLSDN   65 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~---r~~~~~~~l-~~~g------------~-------~~~~~~   65 (276)
                      +|||+|||+|.||++++..|.+ +|+    +|++| +   |++++.+.+ ++.|            .       ..++++
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~----~V~~~-~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGV----EVRVL-TLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTE----EEEEE-CCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCC----EEEEE-eCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            3799999999999999999987 598    99999 9   888888874 4333            1       134456


Q ss_pred             hhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           66 NAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        66 ~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .++++++|+||+|||++.+++++.++
T Consensus        77 ~~a~~~aD~Vilav~~~~~~~v~~~l  102 (404)
T 3c7a_A           77 EIAISGADVVILTVPAFAHEGYFQAM  102 (404)
T ss_dssp             HHHHTTCSEEEECSCGGGHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCchHHHHHHHHHH
Confidence            67788999999999999999999988

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.09  E-value=5.6e-10  Score=96.36  Aligned_cols=81  Identities=14%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCc
Q 023866            6 IPAESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ++|+++||||||+|.||.. ++..|.+. ++    ++. ++ ||++++++.+.+ .|+..+++.+++++++|+|++|+|+
T Consensus         2 ~~M~~~~igiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~   76 (308)
T 3uuw_A            2 NAMKNIKMGMIGLGSIAQKAYLPILTKSERF----EFVGAF-TPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSST   76 (308)
T ss_dssp             ---CCCEEEEECCSHHHHHHTHHHHTSCSSS----EEEEEE-CSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCG
T ss_pred             CccccCcEEEEecCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCc
Confidence            3577899999999999996 88888763 44    676 66 999999988876 6877778888998899999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....+++...
T Consensus        77 ~~h~~~~~~a   86 (308)
T 3uuw_A           77 ETHYEIIKIL   86 (308)
T ss_dssp             GGHHHHHHHH
T ss_pred             HhHHHHHHHH
Confidence            8777766555

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.09  E-value=8e-10  Score=102.22  Aligned_cols=163  Identities=10%  Similarity=0.107  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+++|++|...|+    +|++| ||+++. +...+.|+... +..+++++||+|++++|+. ....
T Consensus       140 l~g~~vgIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~  212 (529)
T 1ygy_A          140 IFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAG  212 (529)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHH
Confidence            456899999999999999999999998    99999 998743 44555787765 7788899999999999987 5665


Q ss_pred             HHHH-HhhccccccCCcccCC-CCcccHHHHHHHcCCCcEE----EEecCcccc----ccCcceEeecCCC-CCHHHHHH
Q 023866           87 AVIT-EEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRFI----RVMPNTPSA----VGEAATVMSLGGT-ATEEDGEL  155 (276)
Q Consensus        87 vl~~-~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~vv----~~~p~~~~~----~~~g~~~i~~~~~-~~~~~~~~  155 (276)
                      ++.+ +. ...+++.-+++.. .++.....+.+.+...++.    .+.+..|..    ......++++... .+++..+.
T Consensus       213 ~i~~~~~-~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~  291 (529)
T 1ygy_A          213 LIDKEAL-AKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDR  291 (529)
T ss_dssp             CBCHHHH-TTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHH
T ss_pred             HhCHHHH-hCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHH
Confidence            5543 21 0111111222222 3332455666666432222    223333321    1122345565544 46666554


Q ss_pred             -----HHHHhhhcCc-e----EEcC-CCCchhhh
Q 023866          156 -----IGKLFGSVGK-I----WRAD-EKLFDAIT  178 (276)
Q Consensus       156 -----v~~ll~~~G~-~----~~~~-e~~~~~~~  178 (276)
                           ++.+.+.++. .    +.++ ++.||.+.
T Consensus       292 ~~~~~~~~l~~~l~~~~~~~~v~~~~~~~hd~i~  325 (529)
T 1ygy_A          292 AGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVA  325 (529)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCSCCSTTSCTTTT
T ss_pred             HHHHHHHHHHHHHcCCCCCcccCCcccccchhhh
Confidence                 5666666653 2    4456 67788765

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=99.08  E-value=2e-08  Score=88.77  Aligned_cols=199  Identities=16%  Similarity=0.096  Sum_probs=131.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH------HHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+.+||+|||+|.-|.+-|.+|+++|.    +|.+- -|..      .+.+.+.+.|..+. +..|+++.+|+|++-+|+
T Consensus        35 lkgK~IaVIGyGsQG~AqAlNLRDSGv----~V~Vg-lr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD  108 (491)
T 3ulk_A           35 LQGKKVVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPD  108 (491)
T ss_dssp             GTTSEEEEESCSHHHHHHHHHHHHTTC----EEEEE-ECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCG
T ss_pred             HcCCEEEEeCCChHhHHHHhHHHhcCC----cEEEE-eCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCCh
Confidence            467899999999999999999999999    99887 6632      33456666888875 588999999999999999


Q ss_pred             ccHHHHHHHHhhccccccCCcccCCC------CcccHHHHHHHcC-CCcEEEEecCccccc-------cCcceEe-ecC-
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERPS------GLQRWSRWVEWTG-HSRFIRVMPNTPSAV-------GEAATVM-SLG-  145 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~~------g~~~~~~l~~~l~-~~~vv~~~p~~~~~~-------~~g~~~i-~~~-  145 (276)
                      ..-.++.+++        .|.+.+++      |. ++..-.-..| +..|+-+-|-.|...       |.|+..+ ... 
T Consensus       109 ~~q~~vy~~I--------~p~lk~G~~L~faHGF-nI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhq  179 (491)
T 3ulk_A          109 KQHSDVVRTV--------QPLMKDGAALGYSHGF-NIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHP  179 (491)
T ss_dssp             GGHHHHHHHH--------GGGSCTTCEEEESSCH-HHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECG
T ss_pred             hhHHHHHHHH--------HhhCCCCCEEEecCcc-cccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEe
Confidence            9888999888        77777652      33 2211000112 456776677766532       5565433 222 


Q ss_pred             -CCCCHHHHHHHHHHhhhcCc--e-EE-cC---CCCch---hhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866          146 -GTATEEDGELIGKLFGSVGK--I-WR-AD---EKLFD---AITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS  214 (276)
Q Consensus       146 -~~~~~~~~~~v~~ll~~~G~--~-~~-~~---e~~~~---~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~  214 (276)
                       ...+....+........+|.  . +. .+   |-+-|   .-+.++|    .+..++.+..+..++.|.+++.++.+..
T Consensus       180 eqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcG----gl~~li~agFetLveaGy~P~~a~~~~~  255 (491)
T 3ulk_A          180 ENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG----MLQAGSLLCFDKLVEEGTDPAYAEKLIQ  255 (491)
T ss_dssp             GGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTH----HHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence             23445677888888889883  2 22 21   22222   2333443    3334455556777889999988876665


Q ss_pred             HHHHHHHHHHH
Q 023866          215 QTVLGAASMVT  225 (276)
Q Consensus       215 ~~~~g~~~~~~  225 (276)
                      ..+.-...++.
T Consensus       256 ~e~klIvdli~  266 (491)
T 3ulk_A          256 FGWETITEALK  266 (491)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHhHHHHHHH
Confidence            54444455554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.06  E-value=1.9e-09  Score=96.77  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=116.5

Q ss_pred             CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------------cCceecc
Q 023866            4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLS   63 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~   63 (276)
                      +|..+.|.+|+|||+|-+|..+|..|.+.||    +|+++ |.++++.+.+.+                    ..+..++
T Consensus        15 ~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~----~V~g~-Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt   89 (444)
T 3vtf_A           15 VPRGSHMASLSVLGLGYVGVVHAVGFALLGH----RVVGY-DVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAE   89 (444)
T ss_dssp             CCTTCCCCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECS
T ss_pred             CCCCCCCCEEEEEccCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEc
Confidence            5666788899999999999999999999999    99999 999999887753                    1244567


Q ss_pred             CchhhhcCCCEEEEeeCc----------ccHHHHHHHHhhcccc---ccCCcc-cCC--CCcccHHHHHHHc----CCCc
Q 023866           64 DNNAVVEYSDVVVFSVKP----------QVDKAAVITEEAFGFC---CCRSEI-ERP--SGLQRWSRWVEWT----GHSR  123 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav~~----------~~~~~vl~~~~~~~~~---~~~~~l-~~~--~g~~~~~~l~~~l----~~~~  123 (276)
                      +..++++.||++|+|||.          ..+.++.+.+.. .++   ++.-++ .+.  .|. +.+.....+    ++..
T Consensus        90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~-~l~~~~~g~lVV~eSTVppGt-te~~~~~~l~~~~~~~~  167 (444)
T 3vtf_A           90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGR-GIRAKGRWHLVVVKSTVPPGT-TEGLVARAVAEEAGGVK  167 (444)
T ss_dssp             SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHH-HHHHHCSCCEEEECSCCCTTT-TTTHHHHHHHTTTTTCC
T ss_pred             CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHH-HHhhcCCCeEEEEeCCCCCch-HHHHHHHHHHHhCCCCC
Confidence            778889999999999962          135555555521 000   001111 211  333 222222222    2222


Q ss_pred             -EEEEecCccccccCcc---------eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHH---
Q 023866          124 -FIRVMPNTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIF---  189 (276)
Q Consensus       124 -vv~~~p~~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~---  189 (276)
                       .+..-|.   -+..|.         -++.++  .++...+.+.++++.+... ++.+.. -..++.+.  .+.|.+   
T Consensus       168 f~v~~~PE---rl~eG~a~~d~~~~~riViG~--~~~~a~~~~~~ly~~~~~~~~~~~~~-~AE~~Kl~--eN~~ravnI  239 (444)
T 3vtf_A          168 FSVASNPE---FLREGSALEDFFKPDRIVIGA--GDERAASFLLDVYKAVDAPKLVMKPR-EAELVKYA--SNVFLALKI  239 (444)
T ss_dssp             CEEEECCC---CCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHTTTSCSCEEEECHH-HHHHHHHH--HHHHHHHHH
T ss_pred             ceeecCcc---cccCCccccccccCCcEEEcC--CCHHHHHHHHHHHhccCCCEEEechh-HHHHHHHH--HHHHHHHHH
Confidence             1222232   122221         122222  3567788899999998865 443332 12222222  134433   


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH
Q 023866          190 LAIEALADGGVAAGLPRELALGLA  213 (276)
Q Consensus       190 ~~~~~l~~~~~~~Gl~~~~a~~~~  213 (276)
                      .+++.|...+.+.|+|..+..+.+
T Consensus       240 a~~NEla~ice~~GiDv~eV~~a~  263 (444)
T 3vtf_A          240 SFANEVGLLAKRLGVDTYRVFEAV  263 (444)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHh
Confidence            345666667789999988776654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.01  E-value=1.4e-09  Score=95.69  Aligned_cols=82  Identities=17%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             CCCCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEe
Q 023866            5 PIPAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFS   78 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~la   78 (276)
                      |.+|+++||||||+|.||. .++..|.+. ++    +|. ++ ||++++++.+.+ .|+..+.+.+++++  +.|+|++|
T Consensus        22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~   96 (350)
T 3rc1_A           22 PANANPIRVGVIGCADIAWRRALPALEAEPLT----EVTAIA-SRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVP   96 (350)
T ss_dssp             ----CCEEEEEESCCHHHHHTHHHHHHHCTTE----EEEEEE-ESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEEC
T ss_pred             CCCCCceEEEEEcCcHHHHHHHHHHHHhCCCe----EEEEEE-cCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEC
Confidence            4456778999999999998 789988876 44    665 66 999999988776 68887788888886  58999999


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      +|+....+++...
T Consensus        97 tp~~~h~~~~~~a  109 (350)
T 3rc1_A           97 LPAVLHAEWIDRA  109 (350)
T ss_dssp             CCGGGHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9998766666554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.00  E-value=2.6e-09  Score=94.01  Aligned_cols=79  Identities=11%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      ++++||||||+|.||..++..|.+.  ++    ++. ++ |+++++++.+.+ .|+..+++.+++++  ++|+|++|+|+
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   85 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRA----ELIDVC-DIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS   85 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCe----EEEEEE-cCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence            4578999999999999999999886  55    665 66 999999988776 78888888988886  79999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      +...+++...
T Consensus        86 ~~h~~~~~~a   95 (354)
T 3q2i_A           86 GLHPTQSIEC   95 (354)
T ss_dssp             GGHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8766665554

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.98  E-value=3.6e-09  Score=92.63  Aligned_cols=78  Identities=13%  Similarity=0.247  Sum_probs=65.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCccc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      +++||||||+|.||..++..|.+. ++    +|. ++ ||++++++.+.+ .|+..+.+..++++  ++|+|++|+|+..
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAANPDL----ELVVIA-DPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTST   77 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred             CceEEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence            457999999999999999999875 44    666 66 999999988776 68888889999888  8999999999987


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..+++...
T Consensus        78 h~~~~~~a   85 (344)
T 3euw_A           78 HVDLITRA   85 (344)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            76666555

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.96  E-value=7.4e-10  Score=95.91  Aligned_cols=84  Identities=20%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEE
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV   76 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~   76 (276)
                      |+++ .+++++||||||+|.||..++..|.+. ++    ++. ++ ++++++++.+.+. +..+.+..++++  ++|+|+
T Consensus         2 m~~p-~~~~~~~igiIG~G~~g~~~~~~l~~~~~~----~~v~v~-d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~   74 (315)
T 3c1a_A            2 MSIP-ANNSPVRLALIGAGRWGKNYIRTIAGLPGA----ALVRLA-SSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVI   74 (315)
T ss_dssp             --------CCEEEEEEECTTTTTTHHHHHHHCTTE----EEEEEE-ESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEE
T ss_pred             CCCC-CCCCcceEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEE
Confidence            6644 445678999999999999999999875 44    654 67 9999988766555 666778888875  799999


Q ss_pred             EeeCcccHHHHHHHH
Q 023866           77 FSVKPQVDKAAVITE   91 (276)
Q Consensus        77 lav~~~~~~~vl~~~   91 (276)
                      +|+|++...+++...
T Consensus        75 i~tp~~~h~~~~~~a   89 (315)
T 3c1a_A           75 IATPPATHAEITLAA   89 (315)
T ss_dssp             EESCGGGHHHHHHHH
T ss_pred             EeCChHHHHHHHHHH
Confidence            999998877776654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.93  E-value=3.9e-09  Score=92.80  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhh--cCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVV--EYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~--~~aDvI~lav~~~   82 (276)
                      |+++||||||+|.||..++..|.+. ++    +|. ++ ||++++++.+.+ .|+..+++..+++  .+.|+|++|+|+.
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   77 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSEKL----KLVTCY-SRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND   77 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSE----EEEEEE-CSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence            4567999999999999999999876 55    765 66 999999988766 6888788888988  5699999999998


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      ...+++...
T Consensus        78 ~h~~~~~~a   86 (354)
T 3db2_A           78 KHAEVIEQC   86 (354)
T ss_dssp             SHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.93  E-value=3.8e-09  Score=92.04  Aligned_cols=79  Identities=10%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      |+++||||||+|.||..++..|.+. ++    +|. ++ ||++++++.+.+ .|+ ..+.+..++++  ++|+|++|+|+
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQA----EVRGIA-SRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYN   77 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSE----EEEEEB-CSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCG
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence            4668999999999999999999874 44    666 56 999999888776 677 57788888887  79999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....+++...
T Consensus        78 ~~h~~~~~~a   87 (330)
T 3e9m_A           78 QGHYSAAKLA   87 (330)
T ss_dssp             GGHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8766666554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.92  E-value=2.8e-09  Score=92.17  Aligned_cols=69  Identities=20%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cC--ceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG--VKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.++|+|||+|.||.+++.+|.+. |+   .+|++| ||++++.+.+.+ .+  +..+.+..++++++|+||+|+|.
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~---~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~  206 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSF---KEVRIW-NRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA  206 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCC---SEEEEE-CSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCC---cEEEEE-cCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC
Confidence            567999999999999999999876 53   389999 999999998877 46  77778888999999999999984

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.92  E-value=3.6e-09  Score=91.34  Aligned_cols=70  Identities=23%  Similarity=0.330  Sum_probs=55.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c---------Ccee-ccCchhhhcCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---------GVKV-LSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---------g~~~-~~~~~~~~~~aDvI~la   78 (276)
                      ||||+|||+|.||.+++..|.++|.  ..+|++| ||++++++.+.. .         .+.+ ..+. +.+++||+||++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~--~~~V~l~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEe
Confidence            3799999999999999999999982  2299999 999988876653 1         2344 3455 778999999999


Q ss_pred             eCccc
Q 023866           79 VKPQV   83 (276)
Q Consensus        79 v~~~~   83 (276)
                      +++..
T Consensus        77 v~~~~   81 (309)
T 1hyh_A           77 LGNIK   81 (309)
T ss_dssp             CSCGG
T ss_pred             cCCcc
Confidence            98654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.92  E-value=2.4e-09  Score=90.99  Aligned_cols=70  Identities=13%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCccc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ..++|+|||+|.||.+++..|.+.|+    +|++| +|++++++.+.+ .|+....+..++++++|+||.|+|+..
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~----~V~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~  198 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA----KVFLW-NRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGL  198 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCC
Confidence            35799999999999999999999997    99999 999999888876 577766677788899999999999765

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.90  E-value=7.1e-09  Score=91.39  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      |+++||||||+|.||..++..|.+. ++    +|. ++ |+++++++.+.+.|+..+++.+++++  +.|+|++|+|+..
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNL----EVHGVF-DILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS   77 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTE----EEEEEE-CSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            5678999999999999999988775 44    665 56 99999987666688888888888887  7899999999987


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..++....
T Consensus        78 h~~~~~~a   85 (359)
T 3e18_A           78 HKELAISA   85 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.89  E-value=1.6e-09  Score=82.87  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=57.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce--eccCchhhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      .++|+|||+|.||..++..|.+.|+    +|++| +|++++.+.+.+ .++.  ...+..++++++|+||.|+|..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~----~v~v~-~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY----KVTVA-GRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC----EEEEE-ESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC
Confidence            5799999999999999999998887    79999 999999988765 5654  3456677889999999999865

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.89  E-value=1e-08  Score=89.35  Aligned_cols=76  Identities=20%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCcccH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      ++||||||+|.||..++..|.+. ++    +|. ++ ||++++++.+.+ .|+. +.+..++++  ++|+|++|+|+...
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h   76 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADA----RLVAVA-DAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH   76 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence            47999999999999999999875 55    766 66 999999988876 6888 788888887  79999999999876


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .+++...
T Consensus        77 ~~~~~~a   83 (331)
T 4hkt_A           77 ADLIERF   83 (331)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666555

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.87  E-value=1.3e-08  Score=89.09  Aligned_cols=79  Identities=15%  Similarity=0.318  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-h-CCCCCCCeE-EEEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeC
Q 023866            8 AESFILGFIGAGKMAESIAKGVA-K-SGVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~-~-~g~~~~~~V-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~   80 (276)
                      ++++||||||+|.||..++..|. + .++    ++ .++ ++++++++.+.+ .|+ ..+.+..++++  ++|+|++|+|
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~----~~vav~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp   80 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGV----KLVAAC-ALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAP   80 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSE----EEEEEE-CSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSC
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCc----EEEEEe-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            45689999999999999999987 4 344    65 466 999999988766 677 56778888876  6999999999


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      +....+++...
T Consensus        81 ~~~h~~~~~~a   91 (346)
T 3cea_A           81 TPFHPEMTIYA   91 (346)
T ss_dssp             GGGHHHHHHHH
T ss_pred             hHhHHHHHHHH
Confidence            98766665554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.86  E-value=3.9e-09  Score=92.59  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||.++++.+. ..|+    +|++| ||++++.+...+.|+....+..+++++||+|++++|+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~  231 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM----KLVYY-DVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYM  231 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC----EEEEE-CCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCC
Confidence            45689999999999999999999 8898    99999 99887766665668776667788899999999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.86  E-value=2.6e-09  Score=93.13  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|.||.++++.|...|+    +|++| +|++++.+.+.+.|+... +..+++++||+|++++|+.
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGV----QRFLY-TGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC----CEEEE-ESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCC
Confidence            456899999999999999999999998    99999 998776666666777765 7778889999999999864

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.86  E-value=3.5e-09  Score=80.38  Aligned_cols=74  Identities=23%  Similarity=0.318  Sum_probs=62.8

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866            9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      +..+|+|||+    |.||..++++|.+.|+    +|+.+ |++.+..     .|+.++.+..++.+..|++++++|++.+
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~----~V~~v-np~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~~~v   82 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVG   82 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC----EEEEe-CCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCHHHH
Confidence            3578999999    9999999999999999    87777 6654221     6888888899988899999999999999


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      .+++.++.
T Consensus        83 ~~v~~~~~   90 (138)
T 1y81_A           83 LQVAKEAV   90 (138)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998774

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.86  E-value=4.5e-09  Score=92.03  Aligned_cols=69  Identities=19%  Similarity=0.291  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+.+++.|...|+    +|.+| ||++...+.+.+.|+....+..+++++||+|++++|.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl  230 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC----NLLYH-DRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL  230 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC----EEEEE-CSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC----EEEEe-CCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence            457899999999999999999999998    99999 9987666666667887777889999999999999984

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.86  E-value=1.1e-08  Score=90.22  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHH-h-CCCCCCCeEE-EEeCCCHHHHHHHHH-cC--ceeccCchhhhc--CCCEEEEe
Q 023866            7 PAESFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVE--YSDVVVFS   78 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~-~-~g~~~~~~V~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~--~aDvI~la   78 (276)
                      .|+++||||||+|.||..++..|. + .++    ++. ++ |+++++++.+.+ .|  +..+.+..++++  +.|+|++|
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~   94 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGV----EVVAVC-DIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIIT   94 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTE----EEEEEE-CSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEEC
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-eCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEc
Confidence            356789999999999999999998 4 344    665 66 999999988776 57  677888888877  58999999


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      +|+....++....
T Consensus        95 tp~~~h~~~~~~a  107 (357)
T 3ec7_A           95 ASNEAHADVAVAA  107 (357)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9998766666555

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.84  E-value=1.2e-08  Score=74.56  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav~~   81 (276)
                      +++|.|+|+|.||..++..|.+.| +    +|+++ +|++++.+.+...++...       .+..++++++|+||.++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~   79 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY----SVTVA-DHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF   79 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE----EEEEE-ESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence            578999999999999999999999 7    89999 999999988876565421       1223456789999999987


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      .....++...
T Consensus        80 ~~~~~~~~~~   89 (118)
T 3ic5_A           80 FLTPIIAKAA   89 (118)
T ss_dssp             GGHHHHHHHH
T ss_pred             hhhHHHHHHH
Confidence            7766666554

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.84  E-value=1.9e-08  Score=88.04  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-h-CCCCCCCeEE-EEeCCCHHHHHHHHH-cC--ceeccCchhhhcC--CCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVEY--SDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~-~-~g~~~~~~V~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~--aDvI~lav~~   81 (276)
                      ++||||||+|.||..++..|. + .++    ++. ++ ||++++++.+.+ .|  ...+++..+++++  .|+|++|+|+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~----~l~av~-d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGA----EIVAVT-DVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSE----EEEEEE-CSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            369999999999999999998 4 344    665 66 999999988876 67  5678888888875  8999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....+++...
T Consensus        77 ~~h~~~~~~a   86 (344)
T 3mz0_A           77 PAHESSVLKA   86 (344)
T ss_dssp             GGHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            8776666555

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.83  E-value=5.8e-09  Score=90.92  Aligned_cols=74  Identities=18%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHH
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDK   85 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~   85 (276)
                      ....++|||||+|.||+++++.|...|+    +|++| ||++++ +...+.|+... +..+++++||+|++++|.. ..+
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~  215 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV----KLYYW-SRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTY  215 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHH
Confidence            3467899999999999999999999998    99999 999876 44445677654 6778889999999999976 444


Q ss_pred             HH
Q 023866           86 AA   87 (276)
Q Consensus        86 ~v   87 (276)
                      .+
T Consensus       216 ~~  217 (333)
T 2d0i_A          216 HI  217 (333)
T ss_dssp             TS
T ss_pred             HH
Confidence            33

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.82  E-value=1.9e-08  Score=87.29  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCcee-ccCchhhh-cCCCEEEEeeCcccH
Q 023866           10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDNNAVV-EYSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~~~~~~-~~aDvI~lav~~~~~   84 (276)
                      ++||||||+|.||. .++..|.+. ++    +|.++ |+++++++.+.+ .|+.. +.+..+++ .++|+|++|+|++..
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~----~l~v~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h   76 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDI----ELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH   76 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTE----EEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH
Confidence            36999999999998 599988764 44    77777 999999988776 67653 44555555 679999999999877


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .+++...
T Consensus        77 ~~~~~~a   83 (323)
T 1xea_A           77 STLAAFF   83 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.82  E-value=1.5e-08  Score=88.80  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=62.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeCccc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      ++||||||+|.||..++..|.+. ++    ++. ++ |+++++++.+.+ .|+ ..+.+..++++  ++|+|++|+|+..
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   76 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDA----ILYAIS-DVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT   76 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTE----EEEEEE-CSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence            36999999999999999998774 34    665 66 999999888776 676 47788888887  7999999999987


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..+++...
T Consensus        77 h~~~~~~a   84 (344)
T 3ezy_A           77 HSELVIAC   84 (344)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            66665554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.82  E-value=6.2e-09  Score=90.82  Aligned_cols=69  Identities=22%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ...++|||||+|.||.++++.|...|+    +|++| +|++++ +...+.|+.. .+..+++++||+|++++|+..
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~  216 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM----RILYY-SRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTR  216 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCT
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-CCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCCh
Confidence            456899999999999999999999998    99999 999877 5555567765 467788899999999998754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.81  E-value=7.3e-09  Score=89.79  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||+++++.+...|+    +|++| || ++++ +...+.|+....+..+++++||+|++++|..
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~  213 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPST  213 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCc
Confidence            456899999999999999999999998    99999 99 8766 3444568776557888899999999999854

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.81  E-value=8.6e-09  Score=90.83  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||.++++.|...|.    + |++| ||++++.+...+.|+....+..+++++||+|++++|..
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~----~~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t  232 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP----KELLYY-DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLH  232 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC----SEEEEE-CSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEEE-CCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCC
Confidence            457899999999999999999999898    8 9999 99886666666678876667889999999999999875

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.81  E-value=2.6e-08  Score=89.91  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCce-----eccCchhhhc--CCCEE
Q 023866            7 PAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVK-----VLSDNNAVVE--YSDVV   75 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~aDvI   75 (276)
                      +|+++||||||+|.||. .++..|.+. ++    +|. ++ |+++++++.+.+ .|+.     .+.+..++++  +.|+|
T Consensus        80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V  154 (433)
T 1h6d_A           80 EDRRFGYAIVGLGKYALNQILPGFAGCQHS----RIEALV-SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAV  154 (433)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHTTTCSSE----EEEEEE-CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             CCCceEEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEE
Confidence            36778999999999997 899988764 33    654 66 999999888776 5664     5678888876  78999


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      ++|+|++...+++...
T Consensus       155 ~iatp~~~h~~~~~~a  170 (433)
T 1h6d_A          155 YIILPNSLHAEFAIRA  170 (433)
T ss_dssp             EECSCGGGHHHHHHHH
T ss_pred             EEcCCchhHHHHHHHH
Confidence            9999998776666554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.80  E-value=1.3e-08  Score=88.14  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      |+++||||||+|.||.. ++..|.+. ++    ++. ++ ||++++++.+.+ .|+..+++.+++..++|+|++|+|+..
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~   77 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS   77 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchh
Confidence            56789999999999996 88888753 44    666 77 999999888766 577766666666568999999999887


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..+++...
T Consensus        78 h~~~~~~a   85 (319)
T 1tlt_A           78 HFDVVSTL   85 (319)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.79  E-value=1.1e-08  Score=89.72  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|.||+++|+.+...|+    +|++| ||++. .+...+.|+....+..+++++||+|++++|..
T Consensus       158 l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt  226 (352)
T 3gg9_A          158 LKGQTLGIFGYGKIGQLVAGYGRAFGM----NVLVW-GRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLN  226 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCS
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-CCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCc
Confidence            357899999999999999999999998    99999 99863 34555678887778899999999999999843

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.79  E-value=4e-08  Score=85.49  Aligned_cols=76  Identities=17%  Similarity=0.301  Sum_probs=61.4

Q ss_pred             CeEEEEcccHHHHHH-HHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCce-eccCchhhhc--CCCEEEEeeCcccH
Q 023866           11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus        11 ~kIgiIG~G~mG~~l-a~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      +||||||+|.||..+ +..|.+.++    ++. ++ ++++++++.+.+ .|+. .+.+..++++  ++|+|++|+|++..
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~----~~vav~-d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGG----EVVSMM-STSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH   75 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTC----EEEEEE-CSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCC----eEEEEE-CCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh
Confidence            589999999999998 788877665    765 66 999999888766 6764 6677888876  59999999999877


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .+++...
T Consensus        76 ~~~~~~a   82 (332)
T 2glx_A           76 REQTLAA   82 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.78  E-value=1.1e-08  Score=90.75  Aligned_cols=69  Identities=13%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+++++.+...|+    +|++| ||++++.+...+.|+....+..+++++||+|++++|.
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Pl  257 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPL  257 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCC
Confidence            456899999999999999999999998    99999 9987665555567887656788999999999999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.78  E-value=3.5e-08  Score=74.36  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee-ccC---ch----hhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSD---NN----AVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~---~~----~~~~~aDvI~lav   79 (276)
                      ..|+|.|+|+|.+|..++..|.+.|+    +|+++ +|++++.+.+.+ .++.. ..+   ..    ..+.++|+||+++
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence            35799999999999999999999998    99999 999999888875 47642 222   11    1256899999999


Q ss_pred             CcccHH
Q 023866           80 KPQVDK   85 (276)
Q Consensus        80 ~~~~~~   85 (276)
                      +++...
T Consensus        78 ~~~~~~   83 (140)
T 1lss_A           78 GKEEVN   83 (140)
T ss_dssp             SCHHHH
T ss_pred             CCchHH
Confidence            876443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.77  E-value=1.2e-08  Score=78.16  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ..+|+|||+    |+||..++++|.+.|+    +|+.+ |++.  +..     .|+.++.+..++.+..|++++++|+..
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~----~v~~v-np~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~~   82 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGY----HVIPV-SPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSEA   82 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTC----CEEEE-CSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCSTH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCC----EEEEe-CCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHHH
Confidence            468999999    8999999999999999    77777 7664  222     588888888888889999999999999


Q ss_pred             HHHHHHHHh
Q 023866           84 DKAAVITEE   92 (276)
Q Consensus        84 ~~~vl~~~~   92 (276)
                      +.+++.++.
T Consensus        83 v~~v~~~~~   91 (145)
T 2duw_A           83 AWGVAQEAI   91 (145)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998774

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.77  E-value=3.3e-08  Score=87.10  Aligned_cols=100  Identities=13%  Similarity=0.266  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cC----ceeccCchhhhc--CCCEEEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVF   77 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDvI~l   77 (276)
                      +++++||||||+|.||..++..|.+. ++    ++. ++ ++++++++.+.+ .|    ...+.+..++++  ++|+|++
T Consensus         3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~----~lv~v~-d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            3 TETQIRIGVMGCADIARKVSRAIHLAPNA----TISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             ---CEEEEEESCCTTHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEE
T ss_pred             CCCceEEEEECchHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEE
Confidence            45678999999999999999998874 34    554 66 999999887766 56    356778888876  5999999


Q ss_pred             eeCcccHHHHHHHHhhccccccCCcccCC-CCcccHHHHH
Q 023866           78 SVKPQVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWV  116 (276)
Q Consensus        78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~  116 (276)
                      |+|++...+++....+.|    ++++..+ -+. +.++.+
T Consensus        78 ~tp~~~h~~~~~~al~aG----k~V~~EKP~a~-~~~e~~  112 (362)
T 1ydw_A           78 PLPTSLHVEWAIKAAEKG----KHILLEKPVAM-NVTEFD  112 (362)
T ss_dssp             CCCGGGHHHHHHHHHTTT----CEEEECSSCSS-SHHHHH
T ss_pred             cCChHHHHHHHHHHHHCC----CeEEEecCCcC-CHHHHH
Confidence            999987777666553222    5555443 334 444433

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.77  E-value=1.5e-08  Score=87.48  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||+++++.|...|+    +|++| ||++++. ...+.|+.. .+..+++++||+|++++|..
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~  207 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM----KVLAY-DILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVS  207 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCC
Confidence            456899999999999999999999998    99999 9988764 345578765 37788899999999999853

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.76  E-value=8.2e-09  Score=89.85  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||+++++.|...|+    +|++| +|++++.     .|.....+..+++++||+|++++|+.
T Consensus       162 l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~  226 (333)
T 3ba1_A          162 FSGKRVGIIGLGRIGLAVAERAEAFDC----PISYF-SRSKKPN-----TNYTYYGSVVELASNSDILVVACPLT  226 (333)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCchhc-----cCceecCCHHHHHhcCCEEEEecCCC
Confidence            456899999999999999999999998    99999 9987653     26655667888899999999999974

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.76  E-value=1.4e-08  Score=87.42  Aligned_cols=68  Identities=24%  Similarity=0.296  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||.++++.+...|+    +|++| ||++++ +...+.|+... +..+++++||+|++++|..
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~  207 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM----NILLY-DPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLV  207 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCS
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCC
Confidence            456899999999999999999999998    99999 999876 45556787654 6778899999999999853

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.76  E-value=1.9e-08  Score=84.77  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=57.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCccc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      .. +|+|||+|.||.+++..|.+.|+    +|+++ +|++++++.+.+ .+.. ..+..++ +++|+||+|+|+..
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~----~v~v~-~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~  183 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL----EVWVW-NRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGL  183 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTT
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCC
Confidence            44 89999999999999999999997    89999 999999888765 4655 4566777 89999999999764

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.76  E-value=8.6e-09  Score=89.73  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCce-eccCchhhhc--CCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDvI~lav~~~   82 (276)
                      |+++||||||+|.||..++..|.+.+.   .++. ++ +|++++++.+.+ .|+. .+.+.+++++  +.|+|++|+|+.
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~---~~~~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGN---GEVVAVS-SRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ   78 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCS---EEEEEEE-CSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCC---cEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            467899999999999999999887532   1555 66 999998877766 6774 6788888887  799999999998


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      ...+++...
T Consensus        79 ~h~~~~~~a   87 (329)
T 3evn_A           79 DHYKVAKAA   87 (329)
T ss_dssp             GHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766666554

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.74  E-value=9.8e-09  Score=89.29  Aligned_cols=68  Identities=13%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+++++.+...|+    +|++| ||++++.+.....|+... +..+++++||+|++++|.
T Consensus       143 l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~  210 (330)
T 4e5n_A          143 LDNATVGFLGMGAIGLAMADRLQGWGA----TLQYH-EAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPL  210 (330)
T ss_dssp             STTCEEEEECCSHHHHHHHHHTTTSCC----EEEEE-CSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCC
Confidence            356899999999999999999999998    99999 998755555556677654 788899999999999984

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.74  E-value=1.2e-08  Score=84.61  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeE-EEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~vl   88 (276)
                      |||||||+|.||..+++.|.+.|+    ++ .+| ||++ +.+.       .+.+..+++ .++|+||+|+|++...+++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~----~lv~v~-d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGF----EIAAIL-DVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYA   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCC----EEEEEE-ecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHH
Confidence            589999999999999999998888    87 577 9885 3221       566788888 6899999999998777776


Q ss_pred             HHHhhccccccCCcccCC
Q 023866           89 ITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~  106 (276)
                      ....+.|    +.++..+
T Consensus        68 ~~~l~~G----~~vv~~~   81 (236)
T 2dc1_A           68 EKILKAG----IDLIVLS   81 (236)
T ss_dssp             HHHHHTT----CEEEESC
T ss_pred             HHHHHCC----CcEEEEC
Confidence            5543222    4555543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=3.2e-08  Score=78.62  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=57.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCc------hhh--hcCCCEEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN------NAV--VEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~------~~~--~~~aDvI~l   77 (276)
                      ...++|.|+|+|.||..+++.|.+. |+    +|+++ ++++++.+.+.+.|+.+. .+.      .++  +.++|+||+
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~----~V~vi-d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK----ISLGI-EIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS----CEEEE-ESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC----eEEEE-ECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence            4467999999999999999999998 98    99999 999999998888776532 221      233  568999999


Q ss_pred             eeCccc
Q 023866           78 SVKPQV   83 (276)
Q Consensus        78 av~~~~   83 (276)
                      ++++..
T Consensus       112 ~~~~~~  117 (183)
T 3c85_A          112 AMPHHQ  117 (183)
T ss_dssp             CCSSHH
T ss_pred             eCCChH
Confidence            998653

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.73  E-value=1.4e-08  Score=88.78  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|+||+.+++.|...|+    +|++| ||++++. .....|+....+..+++++||+|++++|..
T Consensus       166 l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t  234 (347)
T 1mx3_A          166 IRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLN  234 (347)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCC
Confidence            456899999999999999999999998    99999 9876542 223467766667889999999999999864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.72  E-value=1.6e-08  Score=88.28  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|||||+|+||+++|+.+...|.    +|.+| ||++...+..  .|+....+..+++++||+|++++|.
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Pl  237 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL----AIHYH-NRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPG  237 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC----EEEEE-CCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCC
Confidence            46899999999999999999999998    99999 9986544332  2776666889999999999999984

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.71  E-value=1.5e-08  Score=88.21  Aligned_cols=71  Identities=14%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~   86 (276)
                      ...++|||||+|+||+++|+.+...|+    +|++| ||++++     ..+.....+..+++++||+|++++|. ...+.
T Consensus       169 l~gktiGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~  238 (340)
T 4dgs_A          169 PKGKRIGVLGLGQIGRALASRAEAFGM----SVRYW-NRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQN  238 (340)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCT-----TSCCEECSSHHHHHHTCSEEEECC--------
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHH
Confidence            356899999999999999999999998    99999 998764     23555566888999999999999984 33444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       239 li  240 (340)
T 4dgs_A          239 IV  240 (340)
T ss_dssp             --
T ss_pred             Hh
Confidence            43

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.71  E-value=3.5e-08  Score=85.91  Aligned_cols=68  Identities=15%  Similarity=0.246  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ...++|||||+|.||.++|+.+...|+    +|++| ||++++ +...+.|+.. .+..+++++||+|++++|..
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t  230 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM----KTIGY-DPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLL  230 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCC
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCC
Confidence            456899999999999999999999998    99999 998765 3445578764 46788899999999999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.70  E-value=4.1e-08  Score=84.36  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccCchhhhcCCCEEEEeeCcccH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      ...++|+|||+|.||..+++.+...|.    +|++| ||++++.+.+.+.|+..  ..+..++++++|+|++++|+..+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i  228 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA----NVKVG-ARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMIL  228 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCB
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhh
Confidence            356899999999999999999999998    99999 99998887776777653  24567788999999999998544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.70  E-value=6.1e-08  Score=84.50  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-c-CceeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I-GVKVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      |+++||||||+|.||. .++..|...++    +|. ++ |+++++++.+.+ . ++..+.+..++++  +.|+|++|+|+
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGA----ELAGVF-ESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP   76 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTC----EEEEEE-CSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCc----EEEEEe-CCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh
Confidence            5678999999999996 67777766676    865 66 999999888776 4 6677788888876  68999999998


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....++....
T Consensus        77 ~~h~~~~~~a   86 (336)
T 2p2s_A           77 CDRAELALRT   86 (336)
T ss_dssp             GGHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            8665555544

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.69  E-value=3.9e-08  Score=86.64  Aligned_cols=79  Identities=22%  Similarity=0.354  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-c-CceeccCchhhhcC--CCEEEEeeC
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-I-GVKVLSDNNAVVEY--SDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~--aDvI~lav~   80 (276)
                      |+++||||||+|.||.. ++..|.+. +.    ++. ++ ||++++++.+.+ . +...+++.++++++  .|+|++|+|
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   77 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDI----RIVAAC-DSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP   77 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTE----EEEEEE-CSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence            56689999999999985 88888765 44    666 66 999999988877 3 56677888888874  599999999


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      +....+++...
T Consensus        78 ~~~H~~~~~~a   88 (359)
T 3m2t_A           78 PQLHFEMGLLA   88 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            98766665554

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.69  E-value=5.5e-08  Score=86.88  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CCCCCCCeEEEEcccH---HHHHHHHHHHhCC-CCCCCeEE--EEeCCCHHHHHHHHH-cCc---eeccCchhhhcC---
Q 023866            5 PIPAESFILGFIGAGK---MAESIAKGVAKSG-VLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY---   71 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~---mG~~la~~l~~~g-~~~~~~V~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~---   71 (276)
                      +.+|+++||||||+|.   ||...+..+...+ +    ++.  ++ |+++++++.+.+ .|+   ..++|.++++++   
T Consensus         7 ~~~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~----~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A            7 RRIPQPIRWAMVGGGSQSQIGYIHRCAALRDNTF----VLVAGAF-DIDPIRGSAFGEQLGVDSERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CCSCSCEEEEEEECCTTCSSHHHHHHHHHGGGSE----EEEEEEC-CSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTT
T ss_pred             ccccCcceEEEEcCCccchhHHHHHHHHhhCCCe----EEEEEEe-CCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccc
Confidence            3447788999999999   9999998887654 3    665  46 999999988776 787   577888888764   


Q ss_pred             ----CCEEEEeeCcccHHHHHHHH
Q 023866           72 ----SDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        72 ----aDvI~lav~~~~~~~vl~~~   91 (276)
                          .|+|++|+|+....++....
T Consensus        82 ~~~~vD~V~i~tp~~~H~~~~~~a  105 (398)
T 3dty_A           82 RADGIQAVSIATPNGTHYSITKAA  105 (398)
T ss_dssp             CTTCCSEEEEESCGGGHHHHHHHH
T ss_pred             cCCCCCEEEECCCcHHHHHHHHHH
Confidence                89999999998766665554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.68  E-value=5.5e-08  Score=83.25  Aligned_cols=79  Identities=14%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhcCCCEEEEeeCcccH-
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVD-   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav~~~~~-   84 (276)
                      ...++|+|||+|.||..+++.+...|.    +|++| +|++++.+.+.+.|+...  .+..++++++|+|++++|...+ 
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~  227 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA----KVKVG-ARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVT  227 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhC
Confidence            356899999999999999999999998    99999 999988777777777643  4566778999999999987644 


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .+.+..+
T Consensus       228 ~~~l~~m  234 (293)
T 3d4o_A          228 ANVLAEM  234 (293)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            3444433

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.68  E-value=8e-08  Score=83.73  Aligned_cols=80  Identities=15%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeCcccH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      ++||||||+|.||..++..|.+... ..-+|. ++ +|++++++.+.+ .|+ ..+++.+++++  +.|+|++|+|+...
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~-~~~~l~av~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   79 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPR-SEHQVVAVA-ARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH   79 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCT-TTEEEEEEE-CSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCC-CCeEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            4699999999999999998876432 001444 56 999999988876 677 47788888886  69999999999876


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .++....
T Consensus        80 ~~~~~~a   86 (334)
T 3ohs_X           80 KAAVMLC   86 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.67  E-value=9.8e-08  Score=82.71  Aligned_cols=69  Identities=19%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---c------CceeccCchhhhcCCCEEEEeeCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      |||+|||+|.||.+++..|.+.|+  ..+|+++ |+++++++.+..   .      ...+..+..+.+++||+||++++.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~--~~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~   77 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV   77 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--CCeEEEE-eCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCC
Confidence            689999999999999999999886  3489999 999988776542   1      222221235668899999999975


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus        78 ~   78 (319)
T 1a5z_A           78 P   78 (319)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.67  E-value=5.4e-08  Score=85.30  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----Cc--eeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV--KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.++|+|||+|.||.+++.+|....  +..+|++| ||++++++.+.+.     |+  ..+.+..++++++|+||+|+|.
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~--~~~~V~V~-~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHL--GIEEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHS--CCCEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhC--CCcEEEEE-cCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccC
Confidence            4579999999999999999886531  12489999 9999999988762     64  4567788889999999999997


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus       205 ~  205 (350)
T 1x7d_A          205 K  205 (350)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.67  E-value=1.2e-08  Score=87.05  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+++++.|...|+    +|++| ||++++.+     ......+..+++++||+|++++|.
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~  183 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM----RVIAY-TRSSVDQN-----VDVISESPADLFRQSDFVLIAIPL  183 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCC
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc----EEEEE-eccccccc-----cccccCChHHHhhccCeEEEEeec
Confidence            456899999999999999999999999    99999 99876532     244556788999999999999984

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.67  E-value=3.5e-08  Score=85.57  Aligned_cols=95  Identities=12%  Similarity=0.050  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeE-EEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-HH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-DK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~~   85 (276)
                      |+++||+|||+|+||+.++..|.+.+.   -++ .++ ++++++  .+. .|+..+++.++++.++|+||+|+|++. .+
T Consensus         1 M~~irV~IiG~G~mG~~~~~~l~~~~~---~elvav~-d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~   73 (320)
T 1f06_A            1 MTNIRVAIVGYGNLGRSVEKLIAKQPD---MDLVGIF-SRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIP   73 (320)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSS---EEEEEEE-ESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhcCCC---CEEEEEE-cCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHH
Confidence            456899999999999999999987631   154 466 888655  222 577667777777788999999999985 44


Q ss_pred             HHHHHHhhccccccCCcccCC-CCcccHHHH
Q 023866           86 AAVITEEAFGFCCCRSEIERP-SGLQRWSRW  115 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l  115 (276)
                      .+...+. .|    .+++..+ .+. +.+++
T Consensus        74 ~~~~al~-aG----~~Vv~ekp~~~-~~~~~   98 (320)
T 1f06_A           74 EQAPKFA-QF----ACTVDTYDNHR-DIPRH   98 (320)
T ss_dssp             HHHHHHT-TT----SEEECCCCCGG-GHHHH
T ss_pred             HHHHHHH-CC----CEEEECCCCcC-CHHHH
Confidence            4444442 12    4455443 445 55544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.66  E-value=1.3e-07  Score=71.67  Aligned_cols=70  Identities=11%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCc--hhh-----hcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDvI~lav~   80 (276)
                      .+++|.|+|+|.+|..+++.|.+.|+    +|+++ ++++++.+.+.+.|.... .+.  .+.     +.++|+||++++
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~----~V~~i-d~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGK----KVLAV-DKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence            45789999999999999999999999    99999 999999999888776431 121  121     458999999998


Q ss_pred             ccc
Q 023866           81 PQV   83 (276)
Q Consensus        81 ~~~   83 (276)
                      +..
T Consensus        80 ~~~   82 (141)
T 3llv_A           80 DDE   82 (141)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.66  E-value=7.3e-08  Score=79.99  Aligned_cols=92  Identities=16%  Similarity=0.114  Sum_probs=66.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |+|+||+|+|+|+||+.+++.+.+.+.    ++...++|+++.     ..|+.++++.+++. ++|+||-++.|..+.+.
T Consensus         1 M~MmkI~ViGaGrMG~~i~~~l~~~~~----eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~   70 (243)
T 3qy9_A            1 MASMKILLIGYGAMNQRVARLAEEKGH----EIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPNLLFPL   70 (243)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHH
T ss_pred             CCceEEEEECcCHHHHHHHHHHHhCCC----EEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChHHHHHH
Confidence            457999999999999999999988765    666433887662     46888888888877 99999988888777666


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWV  116 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~  116 (276)
                      +. +     ..+.+++....|. +.++++
T Consensus        71 ~~-l-----~~g~~vVigTTG~-s~e~~~   92 (243)
T 3qy9_A           71 LD-E-----DFHLPLVVATTGE-KEKLLN   92 (243)
T ss_dssp             HT-S-----CCCCCEEECCCSS-HHHHHH
T ss_pred             HH-H-----hcCCceEeCCCCC-CHHHHH
Confidence            65 4     1225666666787 664443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.65  E-value=1.1e-07  Score=83.24  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      ..|+||||||+|.||.. ++..+.+. +.    +|..++|+++++++.+.+ .|+ ..++|.+++++  +.|+|++|+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~----~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~   96 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENC----VVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT   96 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSE----EEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCe----EEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence            35689999999999975 56666654 33    666333999999988876 787 46788888875  48999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....++....
T Consensus        97 ~~H~~~~~~a  106 (350)
T 4had_A           97 SQHIEWSIKA  106 (350)
T ss_dssp             GGHHHHHHHH
T ss_pred             chhHHHHHHH
Confidence            8766555444

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.65  E-value=5.1e-08  Score=75.35  Aligned_cols=77  Identities=16%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceec-cC---c---hhh-hcCCCEE
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVL-SD---N---NAV-VEYSDVV   75 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~-~~---~---~~~-~~~aDvI   75 (276)
                      |.....++|.|+|+|.+|..++..|.+.|+    +|+++ +|++++++.+. ..|.... .+   .   .++ +.++|+|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH----SVVVV-DKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence            334456899999999999999999999998    99999 99999988777 5665432 22   1   112 5679999


Q ss_pred             EEeeCcccHHH
Q 023866           76 VFSVKPQVDKA   86 (276)
Q Consensus        76 ~lav~~~~~~~   86 (276)
                      |++++++....
T Consensus        89 i~~~~~~~~~~   99 (155)
T 2g1u_A           89 FAFTNDDSTNF   99 (155)
T ss_dssp             EECSSCHHHHH
T ss_pred             EEEeCCcHHHH
Confidence            99998765433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.65  E-value=1.7e-07  Score=71.17  Aligned_cols=69  Identities=13%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC--chhh-----hcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD--NNAV-----VEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~--~~~~-----~~~aDvI~lav~~   81 (276)
                      ..+|.|+|+|.+|..+++.|.+.|+    +|+++ ++++++.+.+.+.|+.+. .+  ..+.     +.++|+||+++++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI----PLVVI-ETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence            4689999999999999999999999    99999 999999999988887532 22  1121     4689999999987


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      +.
T Consensus        82 ~~   83 (140)
T 3fwz_A           82 GY   83 (140)
T ss_dssp             HH
T ss_pred             hH
Confidence            64

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.64  E-value=1.5e-07  Score=81.39  Aligned_cols=70  Identities=24%  Similarity=0.390  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH--HHH-Hc------Cceec-cCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFE-SI------GVKVL-SDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~-~~------g~~~~-~~~~~~~~~aDvI~la   78 (276)
                      .+|||+|||+|.||.+++..|.++|+.  .+|+++ ||++++++  .+. ..      ...+. .+..+.++++|+||++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~--~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~   82 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIA--REIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVIT   82 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEEC
Confidence            358999999999999999999998863  489999 99987765  221 12      22222 2234567899999999


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      ++.
T Consensus        83 v~~   85 (319)
T 1lld_A           83 AGP   85 (319)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            953

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.62  E-value=1.5e-07  Score=83.00  Aligned_cols=92  Identities=9%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC-ceeccCchhhhcC--CCEEEEeeCc
Q 023866            7 PAESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEY--SDVVVFSVKP   81 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~--aDvI~lav~~   81 (276)
                      +|+++||||||+|.+|. .++..+...+.    +|..++|+++++++.+.+ .| ...+++.++++++  .|+|++|+|+
T Consensus        23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~~----~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   98 (361)
T 3u3x_A           23 MMDELRFAAVGLNHNHIYGQVNCLLRAGA----RLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS   98 (361)
T ss_dssp             ---CCEEEEECCCSTTHHHHHHHHHHTTC----EEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH
T ss_pred             hccCcEEEEECcCHHHHHHHHHHhhcCCc----EEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            45678999999999994 56777766676    866434999999988876 55 5677888888875  8999999998


Q ss_pred             ccHHHHHHHHhhccccccCCcccCC
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      ....++.....+.|    ++++..+
T Consensus        99 ~~H~~~~~~al~aG----khVl~EK  119 (361)
T 3u3x_A           99 SERAELAIRAMQHG----KDVLVDK  119 (361)
T ss_dssp             HHHHHHHHHHHHTT----CEEEEES
T ss_pred             HHHHHHHHHHHHCC----CeEEEeC
Confidence            86655555443223    5555443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.61  E-value=7.8e-08  Score=84.43  Aligned_cols=67  Identities=19%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++|||||+|.||+++|+.+...|.    +|++| ||++ +.+...+.|+.. .+..+++++||+|++++|..
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~----~V~~~-d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt  241 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA----RIRVF-DPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVT  241 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC----EEEEE-CSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSS
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC----EEEEE-CCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCC
Confidence            46899999999999999999998898    99999 9985 334455578764 47889999999999999854

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.61  E-value=1.9e-07  Score=81.57  Aligned_cols=79  Identities=15%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEee
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav   79 (276)
                      ++++||||||+| .||...+..|.+.  +.    +|. ++ |+++++++.+.+ .|+ ..++|..++++  +.|+|++|+
T Consensus        16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~t   90 (340)
T 1zh8_A           16 LRKIRLGIVGCGIAARELHLPALKNLSHLF----EITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTL   90 (340)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTE----EEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECC
T ss_pred             CCceeEEEEecCHHHHHHHHHHHHhCCCce----EEEEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            456899999999 8999999998775  33    664 66 999999988776 676 67788888876  589999999


Q ss_pred             CcccHHHHHHHH
Q 023866           80 KPQVDKAAVITE   91 (276)
Q Consensus        80 ~~~~~~~vl~~~   91 (276)
                      |+....++....
T Consensus        91 p~~~H~~~~~~a  102 (340)
T 1zh8_A           91 PVELNLPFIEKA  102 (340)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CchHHHHHHHHH
Confidence            988766665554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.61  E-value=1.3e-07  Score=84.15  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             CCeEEEEccc-HHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCccc
Q 023866           10 SFILGFIGAG-KMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G-~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      ++||||||+| .||..++..|.+. ++    ++. ++ |+++++++.+.+ .|+..+.|.+++++  +.|+|++|+|++.
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~   76 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDA----QIVAAC-DPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF   76 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTE----EEEEEE-CSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCe----EEEEEE-eCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence            4799999999 9999999998775 33    665 56 999999888766 78888888888886  4999999999987


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..++....
T Consensus        77 H~~~~~~a   84 (387)
T 3moi_A           77 HCEHVVQA   84 (387)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.60  E-value=4.3e-08  Score=84.26  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+++|+.|...|+    +|++| +|+++  +.    +.....+..+++++||+|++++|.. ..+.
T Consensus       122 l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~  190 (303)
T 1qp8_A          122 IQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRG  190 (303)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTT
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHH
Confidence            456899999999999999999999998    99999 99876  21    4434457888999999999999865 3444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       191 ~i  192 (303)
T 1qp8_A          191 LV  192 (303)
T ss_dssp             CB
T ss_pred             Hh
Confidence            43

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.60  E-value=1.4e-07  Score=84.58  Aligned_cols=84  Identities=17%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCC-----CCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVL-----PPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVV   76 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~-----~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~   76 (276)
                      +++++||||||+|.||...+..+.+.+..     ..-+|. ++ |+++++++.+.+ .|+ ..++|.+++++  +.|+|+
T Consensus        23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~-d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~  101 (412)
T 4gqa_A           23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALA-DQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD  101 (412)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEE-CSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE
T ss_pred             ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEE-cCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE
Confidence            34568999999999999998888764210     011555 55 999999988876 676 47788888875  589999


Q ss_pred             EeeCcccHHHHHHHH
Q 023866           77 FSVKPQVDKAAVITE   91 (276)
Q Consensus        77 lav~~~~~~~vl~~~   91 (276)
                      +|+|+....++....
T Consensus       102 I~tp~~~H~~~~~~a  116 (412)
T 4gqa_A          102 ITSPNHLHYTMAMAA  116 (412)
T ss_dssp             ECSCGGGHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHH
Confidence            999998766555444

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.59  E-value=2.9e-08  Score=85.92  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+++|+.|...|+    +|++| ||+++..+.+  .+.....+..+++++||+|++++|.. ..+.
T Consensus       138 l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          138 LKGRTLLILGTGSIGQHIAHTGKHFGM----KVLGV-SRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             cccceEEEEEECHHHHHHHHHHHhCCC----EEEEE-cCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            456899999999999999999999999    99999 9987433211  11222457788999999999999843 3433


Q ss_pred             H
Q 023866           87 A   87 (276)
Q Consensus        87 v   87 (276)
                      +
T Consensus       211 l  211 (324)
T 3hg7_A          211 L  211 (324)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.59  E-value=2.2e-08  Score=86.76  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=53.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|+||+++|+.+...|+    +|++| ||+++..+.+..  .....+..+++++||+|++++|.
T Consensus       135 l~gktvGIiGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPl  201 (324)
T 3evt_A          135 LTGQQLLIYGTGQIGQSLAAKASALGM----HVIGV-NTTGHPADHFHE--TVAFTATADALATANFIVNALPL  201 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCC
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhCCC----EEEEE-CCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCC
Confidence            456899999999999999999999999    99999 998765432211  12345778899999999999984

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.58  E-value=3.6e-07  Score=82.74  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH----cC---ceecc----Cchhhhc--C
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES----IG---VKVLS----DNNAVVE--Y   71 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~   71 (276)
                      +|+++||||||+|.||...+..|.+. ++    +|. ++ |+++++++.+.+    .|   ...++    +.+++++  +
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~   91 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDV----EIVAFA-DPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKN   91 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTE----EEEEEE-CSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTT
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCC
Confidence            46678999999999999999988764 44    665 66 999999887654    35   45666    8888876  5


Q ss_pred             CCEEEEeeCcccHHHHHHHH
Q 023866           72 SDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        72 aDvI~lav~~~~~~~vl~~~   91 (276)
                      .|+|++|+|+....++....
T Consensus        92 vD~V~i~tp~~~h~~~~~~a  111 (444)
T 2ixa_A           92 IDAVFVSSPWEWHHEHGVAA  111 (444)
T ss_dssp             CCEEEECCCGGGHHHHHHHH
T ss_pred             CCEEEEcCCcHHHHHHHHHH
Confidence            89999999988766555544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.58  E-value=1.5e-07  Score=84.63  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcccH---HHHHHHHHHHhCC-CCCCCeEE--EEeCCCHHHHHHHHH-cCc---eeccCchhhhcC------
Q 023866            8 AESFILGFIGAGK---MAESIAKGVAKSG-VLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY------   71 (276)
Q Consensus         8 ~~~~kIgiIG~G~---mG~~la~~l~~~g-~~~~~~V~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~------   71 (276)
                      |+++||||||+|.   ||...+..+...+ +    ++.  ++ ++++++++.+.+ .|+   ..+++.++++++      
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~----~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHY----ELVAGAL-SSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCE----EEEEEEC-CSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCc----EEEEEEe-CCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCC
Confidence            5678999999999   9999988887654 3    664  56 999999988776 687   577888888765      


Q ss_pred             -CCEEEEeeCcccHHHHHHHH
Q 023866           72 -SDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        72 -aDvI~lav~~~~~~~vl~~~   91 (276)
                       .|+|++|+|+....++....
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~a  130 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEF  130 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHH
T ss_pred             CCcEEEECCCcHHHHHHHHHH
Confidence             89999999998766666554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.57  E-value=6.7e-08  Score=84.16  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++|||||+|+||.++++.+...|+    +|++| ||++++.  +.+ .+....+..+++++||+|++++|..
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~  210 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDV  210 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCc
Confidence            45799999999999999999999998    99999 9987654  222 3444446788899999999999853

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.56  E-value=3.8e-07  Score=80.81  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCC----CCCCCeEEEEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEe
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSG----VLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFS   78 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g----~~~~~~V~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~la   78 (276)
                      .|+..||||||+|.||...+.++.+..    ..+..+|..++|+++++++.+.+ .|+ ..++|.+++++  +.|+|++|
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia  101 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT  101 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence            366779999999999998777664321    01222666434999999988876 676 47788888875  57999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCC
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      +|+....++.....+.|    +.++..+
T Consensus       102 tP~~~H~~~a~~al~aG----khVl~EK  125 (393)
T 4fb5_A          102 TPNQFHAEMAIAALEAG----KHVWCEK  125 (393)
T ss_dssp             SCGGGHHHHHHHHHHTT----CEEEECS
T ss_pred             CChHHHHHHHHHHHhcC----CeEEEcc
Confidence            99987655554442222    5555443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.56  E-value=4.6e-08  Score=84.40  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||.++++.|...|+    +|++| ||++++.+      +. ..+..+++++||+|++++|.. ....
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~~------~~-~~~l~ell~~aDvV~l~~p~~~~t~~  209 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGM----RVVYH-ARTPKPLP------YP-FLSLEELLKEADVVSLHTPLTPETHR  209 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSS------SC-BCCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCC----EEEEE-CCCCcccc------cc-cCCHHHHHhhCCEEEEeCCCChHHHh
Confidence            456899999999999999999999998    99999 99876543      22 346778899999999999875 3444


Q ss_pred             HH
Q 023866           87 AV   88 (276)
Q Consensus        87 vl   88 (276)
                      ++
T Consensus       210 li  211 (311)
T 2cuk_A          210 LL  211 (311)
T ss_dssp             CB
T ss_pred             hc
Confidence            43

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.56  E-value=5.2e-08  Score=81.54  Aligned_cols=130  Identities=13%  Similarity=0.049  Sum_probs=80.4

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccH---HHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVD---KAA   87 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~---~~v   87 (276)
                      +++|||+|.||.+++.+|.+.|.   .+|+++ +|++++++.+.+ .+.....+..+.++++|+||.|+|....   ..+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~---~~I~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGV---KDIWVV-NRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            89999999999999999999885   479999 999999887765 3333345566778899999999963210   001


Q ss_pred             -HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHH
Q 023866           88 -VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGE  154 (276)
Q Consensus        88 -l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~  154 (276)
                       ...+     .+..-+++-..+.  ...+++... +.+  |++|+.++.++++...+....+.+++.++
T Consensus       186 ~~~~l-----~~~~~V~Divy~~--T~ll~~A~~~G~~--~~~~Gl~MLv~Qa~~af~~wtg~~~~~~~  245 (253)
T 3u62_A          186 SDDSL-----KNLSLVYDVIYFD--TPLVVKARKLGVK--HIIKGNLMFYYQAMENLKIWGIYDEEVFK  245 (253)
T ss_dssp             CHHHH-----TTCSEEEECSSSC--CHHHHHHHHHTCS--EEECTHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CHHHh-----CcCCEEEEeeCCC--cHHHHHHHHCCCc--EEECCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence             0111     0001122221222  223333221 222  48899998888877554333334565543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.55  E-value=2.3e-07  Score=82.16  Aligned_cols=96  Identities=11%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCC----CCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEE
Q 023866            6 IPAESFILGFIGAGKMAESIAKGVAKSGVL----PPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVV   76 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~----~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~   76 (276)
                      +.|++.||||||+|.||...+..+.+...+    ...+|. ++ |+++++++.+.+ .|+ ..++|.+++++  +.|+|+
T Consensus         2 ~~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~-d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~   80 (390)
T 4h3v_A            2 NAMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLC-GRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVD   80 (390)
T ss_dssp             --CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEE-CSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEE
T ss_pred             CCCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEE
Confidence            346667999999999999888877653210    001455 55 999999988876 676 46778888875  479999


Q ss_pred             EeeCcccHHHHHHHHhhccccccCCcccCC
Q 023866           77 FSVKPQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        77 lav~~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      +|+|+....++.....+.|    ++++..+
T Consensus        81 I~tP~~~H~~~~~~al~aG----khVl~EK  106 (390)
T 4h3v_A           81 VCTPGDSHAEIAIAALEAG----KHVLCEK  106 (390)
T ss_dssp             ECSCGGGHHHHHHHHHHTT----CEEEEES
T ss_pred             EeCChHHHHHHHHHHHHcC----CCceeec
Confidence            9999987665554442223    5555443

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.55  E-value=1.4e-07  Score=86.16  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCce---eccCchhhhc--CCC
Q 023866            7 PAESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVK---VLSDNNAVVE--YSD   73 (276)
Q Consensus         7 ~~~~~kIgiIG~----G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~aD   73 (276)
                      +|+++||||||+    |.||..++..|.+.  ++    +|. ++ |+++++++.+.+ .|+.   .+.+..++++  +.|
T Consensus        36 ~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~----~lvav~-d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD  110 (479)
T 2nvw_A           36 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDID  110 (479)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCS
T ss_pred             CCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCC
Confidence            356789999999    99999999999875  55    665 66 999999988776 5764   7788888875  689


Q ss_pred             EEEEeeCcccHHHHHHHH
Q 023866           74 VVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~   91 (276)
                      +|++|+|+....+++...
T Consensus       111 ~V~I~tp~~~H~~~~~~a  128 (479)
T 2nvw_A          111 MIVVSVKVPEHYEVVKNI  128 (479)
T ss_dssp             EEEECSCHHHHHHHHHHH
T ss_pred             EEEEcCCcHHHHHHHHHH
Confidence            999999988655555443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.53  E-value=2.2e-07  Score=80.36  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H--------cCceeccCchhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S--------IGVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~--------~g~~~~~~~~~~~~~aDvI~l   77 (276)
                      .+||+|||+|.||.+++..|.++|+.   +|++| |+++++++...    .        ..+..+++. +++++||+||+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~---~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLA---DVVLF-DIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc---eEEEE-eCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEE
Confidence            47999999999999999999998862   69999 99988766531    1        123333555 77899999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      ++
T Consensus        79 av   80 (317)
T 2ewd_A           79 TA   80 (317)
T ss_dssp             CC
T ss_pred             eC
Confidence            99

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.52  E-value=1.6e-07  Score=80.80  Aligned_cols=75  Identities=12%  Similarity=0.128  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHHcCcee--ccCchhhhcCCCEEEEeeCccc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKV--LSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      |+++||||||+|+||..++..|.+. ++    +|. ++ ++++++++.   .|+..  ..+..+. .++|+||+|+|+..
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~----elvav~-d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~   77 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDF----EIAGIV-RRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSRE   77 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CC----------CCTTSCEESSGGGS-SSCCEEEECSCHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCC----EEEEEE-cCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchh
Confidence            3467999999999999999998873 44    776 66 999987764   56542  3344443 68999999999887


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      ..++....
T Consensus        78 h~~~~~~a   85 (304)
T 3bio_A           78 VERTALEI   85 (304)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            66666555

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.52  E-value=5e-07  Score=79.24  Aligned_cols=89  Identities=16%  Similarity=0.253  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcC--CCEEEEeeC
Q 023866            7 PAESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDvI~lav~   80 (276)
                      +++++||||||+|.||.. .+..+.+. ++    +|. ++ ++++++++  +. .++..+.+.++++++  .|+|++|+|
T Consensus         4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   76 (352)
T 3kux_A            4 MADKIKVGLLGYGYASKTFHAPLIMGTPGL----ELAGVS-SSDASKVH--ADWPAIPVVSDPQMLFNDPSIDLIVIPTP   76 (352)
T ss_dssp             TTCCEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--TTCSSCCEESCHHHHHHCSSCCEEEECSC
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence            345689999999999997 67777654 44    665 56 99998876  33 467778888888865  899999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCC
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      +....++.....+.|    ++++..+
T Consensus        77 ~~~H~~~~~~al~aG----khV~~EK   98 (352)
T 3kux_A           77 NDTHFPLAQSALAAG----KHVVVDK   98 (352)
T ss_dssp             TTTHHHHHHHHHHTT----CEEEECS
T ss_pred             hHHHHHHHHHHHHCC----CcEEEEC
Confidence            887665555442223    4555443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.52  E-value=2.2e-08  Score=86.47  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...++|||||+|+||+++|+.+...|+    +|++| +|+++..+.+...  ....+..+++++||+|++++|.. ..+.
T Consensus       137 l~g~tvGIiG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~  209 (315)
T 3pp8_A          137 REEFSVGIMGAGVLGAKVAESLQAWGF----PLRCW-SRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVG  209 (315)
T ss_dssp             STTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-ESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhh
Confidence            457899999999999999999999998    99999 9987643211110  11246778899999999999843 3433


Q ss_pred             H
Q 023866           87 A   87 (276)
Q Consensus        87 v   87 (276)
                      +
T Consensus       210 l  210 (315)
T 3pp8_A          210 I  210 (315)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.51  E-value=9.4e-08  Score=83.34  Aligned_cols=64  Identities=16%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|||||+|+||+++|+.+...|.    +|++| ||+++..   .+.++.. .+.++++++||+|++++|.
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Pl  210 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGA----KVIAY-DVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPL  210 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCC
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCC----EEEEE-CCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCC
Confidence            46899999999999999999999998    99999 9987641   1233443 3788999999999999984

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.51  E-value=2.5e-07  Score=80.19  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-----CceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-----GVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-----g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +.++|+|||+|.||..++..|.+..  +..+|.+| ||++++++.+.+ .     .+. +.+.++++ ++|+|++|+|..
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~-~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVF--DIGEVKAY-DVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEE-CSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhC--CccEEEEE-CCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC
Confidence            4579999999999999999998732  12489999 999999988876 2     244 66778888 999999999864

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.49  E-value=7.9e-07  Score=78.38  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      ++++||||||+|.||.. .+..+.+. ++    +|. ++ ++++++++  .+ .++..+.+.+++++  +.|+|++|+|+
T Consensus         5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (364)
T 3e82_A            5 NNTINIALIGYGFVGKTFHAPLIRSVPGL----NLAFVA-SRDEEKVK--RDLPDVTVIASPEAAVQHPDVDLVVIASPN   77 (364)
T ss_dssp             --CEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--HHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence            45689999999999997 66666554 44    765 56 99998765  23 46778888889887  78999999998


Q ss_pred             ccHHHHHHHHhhccccccCCcccCC
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      ....++.....+.|    ++++..+
T Consensus        78 ~~H~~~~~~al~aG----k~Vl~EK   98 (364)
T 3e82_A           78 ATHAPLARLALNAG----KHVVVDK   98 (364)
T ss_dssp             GGHHHHHHHHHHTT----CEEEECS
T ss_pred             HHHHHHHHHHHHCC----CcEEEeC
Confidence            87666555442223    5555443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.47  E-value=7.7e-07  Score=78.26  Aligned_cols=77  Identities=9%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHHc-CceeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      |+++||||||+|.||.. .+..+.+. ++    +|. ++ ++++++..  ++. ++..+.+.+++++  +.|+|++|+|+
T Consensus         3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (358)
T 3gdo_A            3 LDTIKVGILGYGLSGSVFHGPLLDVLDEY----QISKIM-TSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPS   75 (358)
T ss_dssp             TTCEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCT
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCc
Confidence            35689999999999997 66666544 44    665 55 99987632  233 6778889999887  68999999998


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....++....
T Consensus        76 ~~H~~~~~~a   85 (358)
T 3gdo_A           76 GLHYEHTMAC   85 (358)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8766665544

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.46  E-value=1e-07  Score=84.02  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|||||+|+||+.+|+.|...|+    +|.+| ||+.+..    ..+. ...+.++++++||+|++++|.
T Consensus       118 ~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~----~~~~-~~~sl~ell~~aDiV~l~~Pl  180 (381)
T 3oet_A          118 RDRTIGIVGVGNVGSRLQTRLEALGI----RTLLC-DPPRAAR----GDEG-DFRTLDELVQEADVLTFHTPL  180 (381)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHT----TCCS-CBCCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCChHHh----ccCc-ccCCHHHHHhhCCEEEEcCcC
Confidence            46899999999999999999999999    99999 8754322    1222 345788999999999999983

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.45  E-value=7.7e-07  Score=72.60  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee-ccCc------hh-hhcCCCEEEEeeCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDN------NA-VVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~~------~~-~~~~aDvI~lav~~   81 (276)
                      |||.|+|+|.+|..+++.|.+.|+    +|+++ ++++++.+.+.+ .|..+ ..+.      .+ -++++|+||+++++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY----GVVII-NKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence            689999999999999999999999    99999 999999988765 56543 2221      12 25789999999988


Q ss_pred             ccHHHHHHH
Q 023866           82 QVDKAAVIT   90 (276)
Q Consensus        82 ~~~~~vl~~   90 (276)
                      +.....+..
T Consensus        76 d~~n~~~~~   84 (218)
T 3l4b_C           76 DEVNLFIAQ   84 (218)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            765544433

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.43  E-value=1.1e-06  Score=75.42  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=50.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---c------CceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      |||+|||+|.||.+++..|...|+.  .+|+++ |+++++++....   .      ...+..+..+.+++||+||++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~--~eV~L~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSC--SELVLV-DRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence            6999999999999999999998863  479999 999987654222   1      12232233467899999999994

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.43  E-value=4e-07  Score=80.37  Aligned_cols=74  Identities=14%  Similarity=0.293  Sum_probs=56.2

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCc
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      |....+.||+|||+| +|...+..+.+.  ++    ++..+++|++++++.+.+ .|+..++|.++++++.|++++++|+
T Consensus         2 ~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~----elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~   76 (372)
T 4gmf_A            2 PSASPKQRVLIVGAK-FGEMYLNAFMQPPEGL----ELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRS   76 (372)
T ss_dssp             -----CEEEEEECST-TTHHHHHTTSSCCTTE----EEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-
T ss_pred             CCCCCCCEEEEEehH-HHHHHHHHHHhCCCCe----EEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCC
Confidence            334457899999999 899888877653  34    666434999999988876 8999889999999999999999987


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      ..
T Consensus        77 ~~   78 (372)
T 4gmf_A           77 TV   78 (372)
T ss_dssp             -C
T ss_pred             cc
Confidence            64

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.42  E-value=1.7e-07  Score=83.51  Aligned_cols=99  Identities=14%  Similarity=0.074  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cH--
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VD--   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~--   84 (276)
                      ...++|||||+|+||+.+|+.+...|+    +|++| ||+++..    ..++....+.++++++||+|++++|.. ..  
T Consensus       143 l~gktlGiIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  213 (404)
T 1sc6_A          143 ARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKN  213 (404)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTT
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-cCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHH
Confidence            456899999999999999999999998    99999 9876431    123555567889999999999999864 23  


Q ss_pred             ---HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866           85 ---KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG  120 (276)
Q Consensus        85 ---~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~  120 (276)
                         .+.+..+     +++.-+++.. .++...+.+.+.+.
T Consensus       214 li~~~~l~~m-----k~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          214 MMGAKEISLM-----KPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CBCHHHHHHS-----CTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             HhhHHHHhhc-----CCCeEEEECCCChHHhHHHHHHHHH
Confidence               3344444     1112233322 33335566777665

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.42  E-value=3.4e-07  Score=80.09  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             CCeEEEEcccHHHHHHHHH-HHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcC--CCEEEEeeCcc
Q 023866           10 SFILGFIGAGKMAESIAKG-VAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~-l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDvI~lav~~~   82 (276)
                      ++||||||+|.||..+... ++..  ++    +|. ++ ||++++.+...+ .++..+++.++++++  .|+|++|+|+.
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIF-RRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   76 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTE----EEEEEE-CSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCe----EEEEEE-cCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH
Confidence            4799999999999964333 4332  44    676 66 999887754444 477888899998875  89999999988


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      ...++....
T Consensus        77 ~h~~~~~~a   85 (345)
T 3f4l_A           77 SHFEYAKRA   85 (345)
T ss_dssp             GHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.42  E-value=6.6e-07  Score=77.15  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=50.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHH---c-------C--ceeccCchhhhcCCCEEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDvI~   76 (276)
                      |||+|||+|.||.+++..|.+.  |+    +|+++ |+++++++.+..   .       .  +..+++..+ +++||+||
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~----~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVi   74 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLAR----ELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVI   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCS----EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCC----EEEEE-eCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEE
Confidence            6999999999999999999885  56    99999 999887765431   1       1  233455555 89999999


Q ss_pred             EeeC
Q 023866           77 FSVK   80 (276)
Q Consensus        77 lav~   80 (276)
                      ++++
T Consensus        75 iav~   78 (310)
T 1guz_A           75 ITAG   78 (310)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            9995

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.41  E-value=1.4e-07  Score=71.70  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      ..+|+|||+    |++|..++++|.+.||    +  +| ++++.+ .+.+  .|+.++.+..++.+..|++++++|++.+
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~----~--v~-~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~~~   83 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----R--VL-PVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPSAL   83 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC----E--EE-EECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCC----E--EE-EeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHHHH
Confidence            468999999    8999999999999998    6  55 566653 1111  5888888888888889999999999888


Q ss_pred             HHHHHHHhhcc
Q 023866           85 KAAVITEEAFG   95 (276)
Q Consensus        85 ~~vl~~~~~~~   95 (276)
                      .++++++.+.|
T Consensus        84 ~~v~~~~~~~g   94 (140)
T 1iuk_A           84 MDHLPEVLALR   94 (140)
T ss_dssp             TTTHHHHHHHC
T ss_pred             HHHHHHHHHcC
Confidence            88887774334

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.40  E-value=5.7e-07  Score=79.19  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHHc-CceeccCchhhhcC--CCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVEY--SDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--aDvI~lav~~   81 (276)
                      |+++||||||+|.||.. .+..|.+. ++    +|. ++ |+++++..  ++. ++..+.+.++++++  .|+|++|+|+
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHF----ELYKIV-ERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTE----EEEEEE-CSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            46789999999999997 67766654 44    765 55 99987632  234 67788899998876  8999999999


Q ss_pred             ccHHHHHHHH
Q 023866           82 QVDKAAVITE   91 (276)
Q Consensus        82 ~~~~~vl~~~   91 (276)
                      ....++....
T Consensus        76 ~~H~~~~~~a   85 (362)
T 3fhl_A           76 NTHYEYAGMA   85 (362)
T ss_dssp             GGHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8766655544

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.40  E-value=3.5e-07  Score=82.68  Aligned_cols=78  Identities=12%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCce---eccCchhhhc--CCCEE
Q 023866            9 ESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVK---VLSDNNAVVE--YSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~----G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~aDvI   75 (276)
                      +++||||||+    |.||..++..|.+.  ++    +|. ++ |+++++++.+.+ .|+.   .+.+..++++  +.|+|
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V   93 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQF----QITALY-SPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMI   93 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEE
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEE
Confidence            4579999999    99999999999875  45    664 66 999999888776 5664   6788888876  68999


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      ++|+|+....+++...
T Consensus        94 ~i~tp~~~H~~~~~~a  109 (438)
T 3btv_A           94 VIAIQVASHYEVVMPL  109 (438)
T ss_dssp             EECSCHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHH
Confidence            9999988655555443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.40  E-value=2.2e-07  Score=82.81  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cH--
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VD--   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~--   84 (276)
                      ...++|||||+|+||+.+|+.+...|+    +|++| ||+++..    ..+.....+.++++++||+|++++|.. ..  
T Consensus       154 l~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~y-d~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~  224 (416)
T 3k5p_A          154 VRGKTLGIVGYGNIGSQVGNLAESLGM----TVRYY-DTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSK  224 (416)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----C
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhh
Confidence            346899999999999999999999999    99999 9874321    124455568889999999999999853 22  


Q ss_pred             ---HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcCCCcE
Q 023866           85 ---KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRF  124 (276)
Q Consensus        85 ---~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~v  124 (276)
                         .+.+..+     +++.-+++.. .++...+.+.+.+...++
T Consensus       225 li~~~~l~~m-----k~gailIN~aRG~vvd~~aL~~aL~~g~i  263 (416)
T 3k5p_A          225 LITEAKLRKM-----KKGAFLINNARGSDVDLEALAKVLQEGHL  263 (416)
T ss_dssp             CBCHHHHHHS-----CTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             hcCHHHHhhC-----CCCcEEEECCCChhhhHHHHHHHHHcCCc
Confidence               3444444     1112233322 333366777776653333

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.39  E-value=2.6e-07  Score=81.54  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++|||||+|+||+++++.|...|+    +|++| ||+++..    ..+.. ..+..+++++||+|++++|..
T Consensus       115 ~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt  178 (380)
T 2o4c_A          115 AERTYGVVGAGQVGGRLVEVLRGLGW----KVLVC-DPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLN  178 (380)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCc
Confidence            46899999999999999999999998    99999 8866432    23433 356788899999999999854

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.37  E-value=7e-07  Score=67.35  Aligned_cols=69  Identities=17%  Similarity=0.368  Sum_probs=53.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC---ch---hh-hcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---NN---AV-VEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~~---~~-~~~aDvI~lav~   80 (276)
                      .+++|.|+|+|.+|..++..|.+.|+    +|+++ ++++++.+.+.+.+.... .+   ..   ++ +.++|+||.+++
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~   79 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG   79 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence            35689999999999999999999998    89999 999988877766554321 11   11   22 567999999998


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      ..
T Consensus        80 ~~   81 (144)
T 2hmt_A           80 AN   81 (144)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.36  E-value=2.1e-06  Score=74.61  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c----CceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I----GVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~----g~~~~~~~~~~~~~aDvI~la   78 (276)
                      +||+|||+|.||.+++..|...|+.   +|.+| |+++++++...    +    .    .+..+++. +++++||+||++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~---~V~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~a   89 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLG---DVYMF-DIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIIT   89 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEc
Confidence            6999999999999999999998873   59999 99988776422    1    1    23444555 778999999999


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      +
T Consensus        90 v   90 (328)
T 2hjr_A           90 A   90 (328)
T ss_dssp             C
T ss_pred             C
Confidence            8

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.36  E-value=8.2e-07  Score=77.21  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcC---CCEEEEeeCc
Q 023866            7 PAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKP   81 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDvI~lav~~   81 (276)
                      +|+++||||||+|.||. ..+..|.+. +.    +|..+++|++++      .|+..+.+.++++++   .|+|++|+|+
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~----~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANF----KLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTE----EEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCe----EEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            35678999999999998 788888764 34    665333998653      588888888888754   8999999998


Q ss_pred             ccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHH
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVE  117 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~  117 (276)
                      ....++.....+.|    ++++..+ -+. +.++.++
T Consensus        92 ~~H~~~~~~al~aG----khVl~EKP~a~-~~~e~~~  123 (330)
T 4ew6_A           92 QYRYEAAYKALVAG----KHVFLEKPPGA-TLSEVAD  123 (330)
T ss_dssp             HHHHHHHHHHHHTT----CEEEECSSSCS-SHHHHHH
T ss_pred             HHHHHHHHHHHHcC----CcEEEeCCCCC-CHHHHHH
Confidence            87666655543223    5566544 334 4444333

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.35  E-value=6.7e-07  Score=80.57  Aligned_cols=78  Identities=15%  Similarity=0.269  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcccHH--HHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---------CceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIGAGKM--AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------GVKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~G~m--G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~aDvI~   76 (276)
                      |+.+||+|||+|.|  |..++..|++...+. .+|++| |+++++++.+...         .+..++|..+++++||+||
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~-geV~L~-Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI   80 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMS-GTVALY-DLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVI   80 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCC-EEEEEE-CSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccC-CeEEEE-eCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEE
Confidence            56689999999997  688999888643222 289999 9999887665431         2455677888999999999


Q ss_pred             EeeCcccHHHH
Q 023866           77 FSVKPQVDKAA   87 (276)
Q Consensus        77 lav~~~~~~~v   87 (276)
                      +++++..++.-
T Consensus        81 ~airvG~~~~~   91 (450)
T 3fef_A           81 ISILPGSLDDM   91 (450)
T ss_dssp             ECCCSSCHHHH
T ss_pred             eccccCCcccc
Confidence            99998765543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.34  E-value=1e-06  Score=79.94  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             CCCCeEEEEcccHH--HHHHHHHHHhC----CCCCCCeEEEEeCCCHHHHHHHHH--------c----CceeccCchhhh
Q 023866            8 AESFILGFIGAGKM--AESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFES--------I----GVKVLSDNNAVV   69 (276)
Q Consensus         8 ~~~~kIgiIG~G~m--G~~la~~l~~~----g~~~~~~V~v~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~   69 (276)
                      |.++||+|||+|.|  |.+++..|.+.    ++    +|.+| |+++++++....        .    .+..++|..+++
T Consensus         1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~----eV~L~-Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal   75 (480)
T 1obb_A            1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGS----TVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI   75 (480)
T ss_dssp             -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCC----EEEEE-eCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh
Confidence            34689999999997  56677788753    55    99999 999988665332        1    133445666788


Q ss_pred             cCCCEEEEeeCcccHH
Q 023866           70 EYSDVVVFSVKPQVDK   85 (276)
Q Consensus        70 ~~aDvI~lav~~~~~~   85 (276)
                      ++||+||++++.+..+
T Consensus        76 ~dAD~VIiaagv~~~~   91 (480)
T 1obb_A           76 IDADFVINTAMVGGHT   91 (480)
T ss_dssp             TTCSEEEECCCTTHHH
T ss_pred             CCCCEEEECCCccccc
Confidence            9999999999876654

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.34  E-value=6.8e-07  Score=77.06  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.++|+|||+|.||..++.+|.+..  +..+|++| ||+  +.+.+.+     .|+  ..+ +.++++++||+||+|++.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~-~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARF--ALEAILVH-DPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRS  193 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEE-CTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhC--CCcEEEEE-CCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCC
Confidence            4579999999999999999998642  23589999 998  5444433     365  345 888999999999999986


Q ss_pred             c
Q 023866           82 Q   82 (276)
Q Consensus        82 ~   82 (276)
                      .
T Consensus       194 ~  194 (313)
T 3hdj_A          194 T  194 (313)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.34  E-value=4.7e-07  Score=76.37  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CCCCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHH-----HHHHH--cCceeccCchhhhcCCCEEE
Q 023866            6 IPAESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRR-----DAFES--IGVKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~-----~~l~~--~g~~~~~~~~~~~~~aDvI~   76 (276)
                      -.|+++||+|+| +|.||+.+++.+.+. ++    ++...++|+++..     ..+..  .|+.++++.++++.++|+||
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~----eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAPDA----TLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLI   78 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCTTE----EEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEE
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEE
Confidence            347789999999 899999999988764 33    6654338875321     11111  26667788888888999999


Q ss_pred             EeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHH
Q 023866           77 FSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWV  116 (276)
Q Consensus        77 lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~  116 (276)
                      -+++|....+.+....+.|    .+++....|. +.++++
T Consensus        79 DfT~p~a~~~~~~~al~~G----~~vVigTTG~-s~~~~~  113 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRHD----VKLVIGTTGF-SEPQKA  113 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHHT----CEEEECCCCC-CHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHcC----CCEEEECCCC-CHHHHH
Confidence            9999988777766553333    5666666787 665443

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.33  E-value=9.1e-07  Score=78.43  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             CCCCeEEEEc-ccHHHHH-HH----HHHHhCCCCC---CCeE----EEEeCCCHHHHHHHHH-cCce-eccCchhhhcC-
Q 023866            8 AESFILGFIG-AGKMAES-IA----KGVAKSGVLP---PDRI----CTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY-   71 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~-la----~~l~~~g~~~---~~~V----~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~-   71 (276)
                      ++.+|||||| +|.||.. .+    ..+.+.+.+.   ...+    .++ +|++++++.+.+ .|+. .++|.++++++ 
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~-~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~   82 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILV-GRSAEKVEALAKRFNIARWTTDLDAALADK   82 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEE-CSSSHHHHHHHHHTTCCCEESCHHHHHHCS
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCC
Confidence            4568999999 9999998 67    7776655211   1111    377 999999988876 7874 67888888764 


Q ss_pred             -CCEEEEeeCcccHHHHHHHH
Q 023866           72 -SDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        72 -aDvI~lav~~~~~~~vl~~~   91 (276)
                       .|+|++|+|+....++....
T Consensus        83 ~iD~V~i~tp~~~h~~~~~~a  103 (383)
T 3oqb_A           83 NDTMFFDAATTQARPGLLTQA  103 (383)
T ss_dssp             SCCEEEECSCSSSSHHHHHHH
T ss_pred             CCCEEEECCCchHHHHHHHHH
Confidence             89999999987666665544

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.33  E-value=3.3e-07  Score=79.78  Aligned_cols=103  Identities=13%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H--
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D--   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~--   84 (276)
                      ...++|||||+|+||+.+++.+...|+    +|++| ||++++.  + +..+.. .+..+++++||+|++++|... .  
T Consensus       143 l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~~-~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          143 LGQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKG--D-HPDFDY-VSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSS--C-CTTCEE-CCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--h-Hhcccc-CCHHHHHhcCCEEEEcCCCchhHHH
Confidence            346899999999999999999999998    99999 9987543  1 222333 367888999999999998542 2  


Q ss_pred             ---HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcCCCcE
Q 023866           85 ---KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRF  124 (276)
Q Consensus        85 ---~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~v  124 (276)
                         .+.+..+     +++.-+++.. .++...+.|.+.+...++
T Consensus       214 li~~~~l~~m-----k~ga~lIn~srg~~vd~~aL~~aL~~g~i  252 (333)
T 1dxy_A          214 IINEAAFNLM-----KPGAIVINTARPNLIDTQAMLSNLKSGKL  252 (333)
T ss_dssp             SBCHHHHHHS-----CTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             HhCHHHHhhC-----CCCcEEEECCCCcccCHHHHHHHHHhCCc
Confidence               3344444     1112223322 333356677776653333

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.33  E-value=3.5e-07  Score=79.59  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=52.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++|||||+|+||..+++.+...|+    +|++| ||++++.  + +..+. ..+..+++++||+|++++|..
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t  209 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA----TVIGE-DVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYI  209 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCc
Confidence            46899999999999999999999998    99999 9987643  2 22233 346778899999999999853

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.33  E-value=1.4e-06  Score=75.38  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH------cCcee--ccCchhhhcCC
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKV--LSDNNAVVEYS   72 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~--~~~~~~~~~~a   72 (276)
                      |-.|+++||+|||+|.||.+++..|...|+ .  +|.++ |+++++++    .+.+      ....+  +++. +++++|
T Consensus         2 ~~~m~~~kI~viGaG~vG~~~a~~l~~~~~-~--~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~a   76 (324)
T 3gvi_A            2 PGSMARNKIALIGSGMIGGTLAHLAGLKEL-G--DVVLF-DIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGA   76 (324)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTC
T ss_pred             CCCCcCCEEEEECCCHHHHHHHHHHHhCCC-C--eEEEE-eCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCC
Confidence            556788999999999999999999999886 2  89999 99988764    2222      13333  3444 788999


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||++.
T Consensus        77 DiVIiaa   83 (324)
T 3gvi_A           77 DVVIVTA   83 (324)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcc
Confidence            9999997

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.33  E-value=1.8e-06  Score=76.98  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=58.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..++|+|||+|.+|.++++.|...|.    +|+++ ++++.+.......|.... +..++++.+|+|+++....
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga----~Viv~-D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~gt~  277 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGA----RVVVT-EVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTTGND  277 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCS
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECCCCc
Confidence            46899999999999999999999998    99999 999988776667787654 7889999999999876543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.32  E-value=1.3e-06  Score=74.73  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=55.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCc---eec--cCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV---KVL--SDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~--~~~~~~~~~aDvI~lav~~~   82 (276)
                      ..+++.|||+|.||.+++..|.+.|.   .+|+++ +|++++++.+.+ .+.   .+.  .+..+.+.++|+||.|+|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~---~~V~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAA---ERIDMA-NRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence            45799999999999999999999885   389999 999999988876 333   221  23446678899999999854

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.32  E-value=2e-06  Score=74.42  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH------cCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      ..+||+|||+|.||.+++..|...|+.  .+|.++ |+++++++.    |.+      .++.+..+..+++++||+||++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~--~~l~l~-D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~   80 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGIT--DELVVI-DVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCIC   80 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--ceEEEE-ecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEe
Confidence            458999999999999999999988863  489999 999988765    443      1334444556778999999999


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        81 a   81 (326)
T 3pqe_A           81 A   81 (326)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.31  E-value=9.5e-07  Score=67.38  Aligned_cols=76  Identities=21%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      ..+|+|||+    |.+|..++++|.+.||    +|+   +.+++. +.  -.|+.++.+..++.+..|+++++||+..+.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~----~v~---~Vnp~~-~~--i~G~~~y~sl~~l~~~vDlvvi~vp~~~~~   91 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY----DVY---PVNPKY-EE--VLGRKCYPSVLDIPDKIEVVDLFVKPKLTM   91 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEE---EECTTC-SE--ETTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC----EEE---EECCCC-Ce--ECCeeccCCHHHcCCCCCEEEEEeCHHHHH
Confidence            468999999    7999999999999998    754   444443 11  158888888888888899999999999999


Q ss_pred             HHHHHHhhcc
Q 023866           86 AAVITEEAFG   95 (276)
Q Consensus        86 ~vl~~~~~~~   95 (276)
                      +++.++.+.|
T Consensus        92 ~vv~~~~~~g  101 (144)
T 2d59_A           92 EYVEQAIKKG  101 (144)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9988774333

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.30  E-value=2.7e-06  Score=73.50  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-c-----CceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-I-----GVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-~-----g~~~~~~~~~~~~~aDvI~la   78 (276)
                      ..+||+|||+|.||.+++..|...|..  .+|.++ |+++++++...    + .     .+.+..+..+++++||+||++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~--~ev~l~-Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia   81 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIA--DEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC   81 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-eCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEc
Confidence            457999999999999999999887752  489999 99987655321    1 1     233434556778999999999


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      ++.
T Consensus        82 ~~~   84 (316)
T 1ldn_A           82 AGA   84 (316)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            854

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.29  E-value=1.5e-06  Score=73.05  Aligned_cols=65  Identities=17%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+++.|||+|.||.+++..|.+.|.    +|+++ +|++++++.+.+.++... +..++ .++|+||-|+|.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~----~v~V~-nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL----QVSVL-NRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccC
Confidence            5799999999999999999999997    99999 999999988876665543 23333 389999999974

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.29  E-value=1.9e-06  Score=78.08  Aligned_cols=78  Identities=13%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~   85 (276)
                      ...++|+|||+|.||..+|+.+...|.    +|++| +|++.+..+....|+.. .+..+++++||+|++++.... + .
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~----~Viv~-d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~lI~~  328 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKL  328 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC----EEEEE-eCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhhhcCH
Confidence            456899999999999999999999998    99999 99998765555667765 468889999999999974433 2 3


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.+..+
T Consensus       329 ~~l~~M  334 (479)
T 1v8b_A          329 EHLLKM  334 (479)
T ss_dssp             HHHTTC
T ss_pred             HHHhhc
Confidence            444443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.28  E-value=2.2e-06  Score=77.87  Aligned_cols=78  Identities=12%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~   85 (276)
                      ...++|+|||+|.||..+|+.+...|.    +|++| +|++.+.......|.... +..+++++||+|++++.... + .
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~----~V~v~-d~~~~~~~~a~~~G~~~~-~l~ell~~aDiVi~~~~t~~lI~~  348 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA----TVWVT-EIDPICALQAAMEGYRVV-TMEYAADKADIFVTATGNYHVINH  348 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSCHHHHHHHHTTTCEEC-CHHHHTTTCSEEEECSSSSCSBCH
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCChHhHHHHHHcCCEeC-CHHHHHhcCCEEEECCCcccccCH
Confidence            356899999999999999999999898    99999 999987544445677653 68889999999999985332 2 4


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.+..+
T Consensus       349 ~~l~~M  354 (494)
T 3d64_A          349 DHMKAM  354 (494)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            555555

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.28  E-value=2.3e-06  Score=74.44  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=52.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c----CceeccCchhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I----GVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~----g~~~~~~~~~~~~~aDvI~l   77 (276)
                      .|||+|||+|.||.+++..|...|+.   +|.+| |+++++++...    +    .    .+..+++..+++++||+||+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~---~V~L~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~   84 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELA---DVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV   84 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence            57999999999999999999988863   69999 99988766521    1    1    13345667668899999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      ++
T Consensus        85 a~   86 (331)
T 1pzg_A           85 TA   86 (331)
T ss_dssp             CC
T ss_pred             cc
Confidence            98

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.28  E-value=2e-06  Score=74.15  Aligned_cols=99  Identities=11%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCceeccCchhhh----------cCCCEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVV----------EYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~----------~~aDvI   75 (276)
                      .|+||||||+ |.||...+..+.+.+.    ++...+|+++++. .+.+  .+...+++.++++          .+.|+|
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V   76 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEVGG----VLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYL   76 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHTTC----EEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred             CceEEEEECCChHHHHHHHHHHHhCCC----EEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence            4689999999 7899999999988765    6654449998874 2333  3567777877776          578999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHH
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVE  117 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~  117 (276)
                      ++|+|+....++.....+.|    ++++..+ -.. +.++.++
T Consensus        77 ~I~tP~~~H~~~~~~al~aG----khVl~EKPla~-~~~ea~~  114 (312)
T 3o9z_A           77 SIASPNHLHYPQIRMALRLG----ANALSEKPLVL-WPEEIAR  114 (312)
T ss_dssp             EECSCGGGHHHHHHHHHHTT----CEEEECSSSCS-CHHHHHH
T ss_pred             EECCCchhhHHHHHHHHHCC----CeEEEECCCCC-CHHHHHH
Confidence            99999987666655543223    5566444 333 4444433

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.27  E-value=2e-06  Score=74.32  Aligned_cols=99  Identities=13%  Similarity=0.067  Sum_probs=67.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCceeccCchhhh-----------cCCCE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVV-----------EYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~-----------~~aDv   74 (276)
                      .|+||||||+ |.||...+..|.+.+.    ++...+|+++++. .+.+  .+...+++.++++           .+.|+
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~   76 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDTGN----CLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDY   76 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHTTC----EEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhCCC----EEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence            3689999999 7899999999988766    6664449998764 2333  3567777877765           46899


Q ss_pred             EEEeeCcccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVE  117 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~  117 (276)
                      |++|+|+....++.....+.|    ++++..+ -+. +.++.++
T Consensus        77 V~I~tP~~~H~~~~~~al~aG----khVl~EKPla~-~~~ea~~  115 (318)
T 3oa2_A           77 VSICSPNYLHYPHIAAGLRLG----CDVICEKPLVP-TPEMLDQ  115 (318)
T ss_dssp             EEECSCGGGHHHHHHHHHHTT----CEEEECSSCCS-CHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHHCC----CeEEEECCCcC-CHHHHHH
Confidence            999999987666655543223    5566544 233 4444433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.25  E-value=2.3e-06  Score=77.90  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-HH-H
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-DK-A   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~~-~   86 (276)
                      ..++|+|||+|.||..+++.+...|.    +|+++ ++++++++.+.+.|+.. .+..++++.+|+||++++... +. +
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga----~Viv~-d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~~~  346 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGA----RVSVT-EIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIMLE  346 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBCHH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHHHH
Confidence            46799999999999999999999998    99999 99999988887788874 356778889999999997554 33 5


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      .+..+
T Consensus       347 ~l~~m  351 (494)
T 3ce6_A          347 HIKAM  351 (494)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            55554

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.25  E-value=3.1e-06  Score=73.21  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH------cCceec-cCchhhhcCCCEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVV   75 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDvI   75 (276)
                      .|+++||+|||+|.||.+++..|...|+ .  +|.++ |+++++++    .+.+      ....+. ++..+++++||+|
T Consensus         2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~-~--~v~l~-Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvV   77 (321)
T 3p7m_A            2 AMARKKITLVGAGNIGGTLAHLALIKQL-G--DVVLF-DIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVV   77 (321)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-c--eEEEE-eCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEE
Confidence            3677899999999999999999998886 2  89999 99988764    2332      123332 2345788999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      |++.
T Consensus        78 Ii~a   81 (321)
T 3p7m_A           78 IVTA   81 (321)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9997

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.24  E-value=2.9e-06  Score=74.28  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH----cCceeccCchhhhcC--CCEEEEeeC
Q 023866           10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES----IGVKVLSDNNAVVEY--SDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--aDvI~lav~   80 (276)
                      ++||||||+|.||. ..+..+.+. ++    +|. ++ +++  +.+.+.+    .++..+.+.++++++  .|+|++|+|
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   74 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETL----EVKTIF-DLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP   74 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-CCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence            46999999999998 456655543 34    665 55 887  3334432    577888899998875  899999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCC
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      +....++.....+.|    ++++..+
T Consensus        75 ~~~h~~~~~~al~aG----k~Vl~EK   96 (349)
T 3i23_A           75 AHTHYDLAKQAILAG----KSVIVEK   96 (349)
T ss_dssp             GGGHHHHHHHHHHTT----CEEEECS
T ss_pred             cHHHHHHHHHHHHcC----CEEEEEC
Confidence            987666655443223    5555443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.24  E-value=2.2e-06  Score=75.30  Aligned_cols=66  Identities=12%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc-------------------------
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-------------------------   63 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~-------------------------   63 (276)
                      ...||+|||+|.||..+++.+...|.    +|+++ ||++++++.+.+.|.....                         
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~  257 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA----KTTGY-DVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ  257 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence            35799999999999999999999998    99999 9999999998887765422                         


Q ss_pred             CchhhhcCCCEEEEee
Q 023866           64 DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 ~~~~~~~~aDvI~lav   79 (276)
                      +..+.++++|+||.++
T Consensus       258 ~l~e~l~~aDIVI~tv  273 (381)
T 3p2y_A          258 ALEDAITKFDIVITTA  273 (381)
T ss_dssp             HHHHHHTTCSEEEECC
T ss_pred             HHHHHHhcCCEEEECC
Confidence            2356788999999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.24  E-value=2.7e-06  Score=72.57  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH----c--C--ceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----I--G--VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~--g--~~~~~~~~~~~~~aDvI~la   78 (276)
                      |||+|||+|.||.+++..|...|+.  .+|.+| |+++++++    .+.+    .  .  +..+++ .+++++||+||++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~--~~v~L~-D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence            6999999999999999999988863  489999 99998865    1222    1  2  223345 7789999999999


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        77 a   77 (294)
T 1oju_A           77 A   77 (294)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.22  E-value=2.4e-06  Score=75.33  Aligned_cols=77  Identities=12%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--e--ec--cCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--K--VL--SDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~--~~--~~~~~~~~~aDvI~lav~~~   82 (276)
                      .+|||.|||+|.+|+.++..|.+ .+    +|.++ +|+.++++.+.+..-  .  +.  .+..++++++|+||.|+||.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~----~v~~~-~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EF----DVYIG-DVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TS----EEEEE-ESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CC----CeEEE-EcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            47899999999999999998865 45    99999 999999988766321  1  11  12345678999999999998


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      .-..+++..
T Consensus        89 ~~~~v~~~~   97 (365)
T 3abi_A           89 LGFKSIKAA   97 (365)
T ss_dssp             GHHHHHHHH
T ss_pred             ccchHHHHH
Confidence            666666544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.22  E-value=5.7e-06  Score=63.45  Aligned_cols=73  Identities=10%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH---cCceec-cC---c---hhh-hcCCCEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES---IGVKVL-SD---N---NAV-VEYSDVV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~---~g~~~~-~~---~---~~~-~~~aDvI   75 (276)
                      |..++|.|+|+|.+|..+++.|.+.|+    +|+++ +++ +++.+.+.+   .|+.+. .|   .   .++ ++++|+|
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            345789999999999999999999998    99999 997 566665553   354432 12   1   222 6789999


Q ss_pred             EEeeCcccHH
Q 023866           76 VFSVKPQVDK   85 (276)
Q Consensus        76 ~lav~~~~~~   85 (276)
                      |++++++...
T Consensus        76 i~~~~~d~~n   85 (153)
T 1id1_A           76 LALSDNDADN   85 (153)
T ss_dssp             EECSSCHHHH
T ss_pred             EEecCChHHH
Confidence            9999876543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.22  E-value=6e-07  Score=73.05  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=53.1

Q ss_pred             CCCeEEEEcccHHHHHHHHH--HHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhcCCCEEEEeeCcccH
Q 023866            9 ESFILGFIGAGKMAESIAKG--VAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~--l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      +.++|+|||+|++|..+++.  +...|+    ++..++|+++++..... .|+.  ..++..+++++.|++++|+|+...
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~~~~g~----~iVg~~D~dp~k~g~~i-~gv~V~~~~dl~eli~~~D~ViIAvPs~~~  158 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFTKNNNT----KISMAFDINESKIGTEV-GGVPVYNLDDLEQHVKDESVAILTVPAVAA  158 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC------C----CEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHCSSCCEEEECSCHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHhcccCCc----EEEEEEeCCHHHHHhHh-cCCeeechhhHHHHHHhCCEEEEecCchhH
Confidence            34789999999999999994  334466    66655599988764321 2333  345667777666999999998877


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      .++...+.
T Consensus       159 ~ei~~~l~  166 (215)
T 2vt3_A          159 QSITDRLV  166 (215)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777664

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.21  E-value=5.2e-06  Score=71.81  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH-----cCceeccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      ..+||+|||+|.||.+++..|...|+.  .+|.++ |+++++++-    +.+     ..+.+..+..+.+++||+||++.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA   84 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-eCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence            458999999999999999999988864  489999 999987763    332     13445555667799999999986


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      .
T Consensus        85 g   85 (326)
T 3vku_A           85 G   85 (326)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.19  E-value=5.6e-06  Score=72.64  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhc-CCCEEEEeeCcccH-
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQVD-   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDvI~lav~~~~~-   84 (276)
                      .+.++|+|+|+|+||..+++.|.+.|.    +|+++ |+++++++.+.+ .|.... +..++.. +||+++.|.....+ 
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga----kVvv~-D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~~I~  244 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLN  244 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCBS
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHHHhC
Confidence            456899999999999999999999998    99999 999999887766 576554 3344444 89999998654433 


Q ss_pred             HHHHHHH
Q 023866           85 KAAVITE   91 (276)
Q Consensus        85 ~~vl~~~   91 (276)
                      .+.+..+
T Consensus       245 ~~~~~~l  251 (364)
T 1leh_A          245 DFTIPQL  251 (364)
T ss_dssp             TTHHHHC
T ss_pred             HHHHHhC
Confidence            2334444

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.18  E-value=4.9e-06  Score=72.00  Aligned_cols=66  Identities=11%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c--C--ceeccCchhhhcCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--G--VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g--~~~~~~~~~~~~~aDvI~   76 (276)
                      .++||+|||+|.||.+++..|...|++   +|.++ |+++++++...    +    .  .  +..+++. +++++||+||
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~---~v~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLG---DVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVI   77 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-eCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence            357999999999999999999998873   58888 99988765322    1    1  2  3333555 7789999999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      +++
T Consensus        78 ~a~   80 (322)
T 1t2d_A           78 VTA   80 (322)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            998

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.17  E-value=5.2e-06  Score=71.49  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=51.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH------cCceec-cCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|.||.+++..|...|+.  .+|.++ |+++++++    .+.+      ....+. ++..+.+++||+||++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVA--KEVVMV-DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--SEEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECC
Confidence            7999999999999999999988863  489999 99988764    2332      133443 35567789999999987

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.16  E-value=7.4e-07  Score=75.40  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-ceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +.+++.|||+|.||.+++..|.+.|.   .+|+++ +|++++++.+.+.. .....+..+.+.++|+||-++|..
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~G  186 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVR---PTLTVA-NRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAG  186 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCC---SCCEEE-CSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCC
Confidence            45789999999999999999999886   379999 99999887665421 112334556678899999999753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.16  E-value=4.4e-06  Score=74.63  Aligned_cols=69  Identities=23%  Similarity=0.350  Sum_probs=55.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec--cCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|+|||+|.||..+++.|...|.   .+|+++ +|++++++.+.+ .|....  .+..+.+..+|+||.|++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            46799999999999999999998885   379999 999999865554 676532  3455667899999999964

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.15  E-value=9e-06  Score=70.19  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH----HH------cCceeccCchhhhcCCCEEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDvI~l   77 (276)
                      |..+||+|||+|.+|.+++..|...+++  .+|.++ |+++++++..    .+      ..+.+..+..+++++||+||+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~--~ei~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIV--DELVII-DLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI   80 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSC--SEEEEE-CSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence            4568999999999999999999888752  489999 9998776532    22      123344456777999999999


Q ss_pred             eeC
Q 023866           78 SVK   80 (276)
Q Consensus        78 av~   80 (276)
                      +++
T Consensus        81 ~ag   83 (317)
T 3d0o_A           81 CAG   83 (317)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.13  E-value=5.2e-06  Score=73.55  Aligned_cols=65  Identities=14%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--------------------------
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--------------------------   63 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--------------------------   63 (276)
                      ..||+|||+|.||..+++.+...|.    +|+++ |+++++++.+.+.|.....                          
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~  264 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGA----VVSAT-DVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVK  264 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSTTHHHHHHHTTCEECCCCC-----------------CHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhh
Confidence            4799999999999999999999998    99999 9999999888887764321                          


Q ss_pred             ---CchhhhcCCCEEEEee
Q 023866           64 ---DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 ---~~~~~~~~aDvI~lav   79 (276)
                         +..+.++++|+||.++
T Consensus       265 ~~~~l~e~l~~aDVVI~tv  283 (405)
T 4dio_A          265 QAALVAEHIAKQDIVITTA  283 (405)
T ss_dssp             HHHHHHHHHHTCSEEEECC
T ss_pred             hHhHHHHHhcCCCEEEECC
Confidence               3356678999999986

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.12  E-value=4.5e-06  Score=71.06  Aligned_cols=94  Identities=13%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      +..||+|+|+ |+||..+++.+.+.|+    ++. .+ ++.... +  ...|+.++.+..++.+  +.|++++++|+...
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~----~~V~~V-~p~~~g-~--~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~   77 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGV-TPGKGG-T--THLGLPVFNTVREAVAATGATASVIYVPAPFC   77 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTT-C--EETTEEEESSHHHHHHHHCCCEEEECCCGGGH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEEe-CCCccc-c--eeCCeeccCCHHHHhhcCCCCEEEEecCHHHH
Confidence            4689999999 9999999999998887    643 34 553210 1  1368888888888887  89999999999999


Q ss_pred             HHHHHHHhhccccccCCcccCCCCcccHHH
Q 023866           85 KAAVITEEAFGFCCCRSEIERPSGLQRWSR  114 (276)
Q Consensus        85 ~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~  114 (276)
                      .+++.+..+.|.   +.++-...|+ +.++
T Consensus        78 ~~~~~ea~~~Gi---~~iVi~t~G~-~~~~  103 (288)
T 2nu8_A           78 KDSILEAIDAGI---KLIITITEGI-PTLD  103 (288)
T ss_dssp             HHHHHHHHHTTC---SEEEECCCCC-CHHH
T ss_pred             HHHHHHHHHCCC---CEEEEECCCC-CHHH
Confidence            888887754332   2223223566 5543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.11  E-value=1.2e-05  Score=69.63  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-----cCceeccCchhhhcCCC
Q 023866            3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSD   73 (276)
Q Consensus         3 ~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aD   73 (276)
                      .++.. +.+||+|||+|.+|.+++..|...+++  .+|.++ |+++++++...    +     ..+.+..+..+++++||
T Consensus         3 ~~~~~-~~~KI~IiGaG~vG~~la~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aD   78 (326)
T 2zqz_A            3 SITDK-DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDAD   78 (326)
T ss_dssp             ---CC-CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCS
T ss_pred             ccccC-CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCC
Confidence            34444 458999999999999999999887763  489999 99988775422    2     12334445677799999


Q ss_pred             EEEEeeC
Q 023866           74 VVVFSVK   80 (276)
Q Consensus        74 vI~lav~   80 (276)
                      +||++..
T Consensus        79 vVii~ag   85 (326)
T 2zqz_A           79 LVVITAG   85 (326)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999984

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.11  E-value=4.7e-06  Score=70.38  Aligned_cols=69  Identities=10%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----CceeccCchhhhc-CCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVE-YSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~-~aDvI~lav~~~   82 (276)
                      +.+++.|+|+|.||.+++..|.+.|.    +|+++ +|++++++.+.+ .    .+.. .+..++.+ ++|+||.+++..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~----~v~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCC
Confidence            45799999999999999999999997    99999 999999888765 2    2222 23334333 899999999864


Q ss_pred             c
Q 023866           83 V   83 (276)
Q Consensus        83 ~   83 (276)
                      .
T Consensus       192 ~  192 (272)
T 1p77_A          192 L  192 (272)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.09  E-value=8.3e-06  Score=68.79  Aligned_cols=67  Identities=16%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      .+++.|||+|.||.+++..|.+.|.   .+|+++ +|++++++.+.+ .+.....+..  +.++|+||-++|..
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~---~~i~v~-nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g  186 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG  186 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence            4689999999999999999999885   379999 999999988876 4554332222  46899999999854

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.08  E-value=4.5e-06  Score=71.30  Aligned_cols=86  Identities=8%  Similarity=0.032  Sum_probs=58.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHh----CCCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEee
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAK----SGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSV   79 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~----~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav   79 (276)
                      +++++||||||+|.||...+..+.+    .+.    ++. ++ +|++..    ...|+. ..+.+++++  +.|+|++|+
T Consensus         4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~----~lvav~-d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~t   73 (294)
T 1lc0_A            4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFL----NLIGFV-SRRELG----SLDEVR-QISLEDALRSQEIDVAYICS   73 (294)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTE----EEEEEE-CSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECS
T ss_pred             CCCcceEEEEEEcHHHHHHHHHHhccccCCCE----EEEEEE-CchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeC
Confidence            4567899999999999999998865    233    555 55 876321    124665 467788776  689999999


Q ss_pred             CcccHHHHHHHHhhccccccCCcccCC
Q 023866           80 KPQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      |+....++.....+.|    ++++..+
T Consensus        74 p~~~H~~~~~~al~aG----khVl~EK   96 (294)
T 1lc0_A           74 ESSSHEDYIRQFLQAG----KHVLVEY   96 (294)
T ss_dssp             CGGGHHHHHHHHHHTT----CEEEEES
T ss_pred             CcHhHHHHHHHHHHCC----CcEEEeC
Confidence            9886655555442222    5555443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.08  E-value=9.9e-06  Score=69.44  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH---HHHHHH---cCceeccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---RDAFES---IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~---~~~l~~---~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      .++||+|||+|.||..++..|+..|++  .+|.++ |++++.   ...+..   ..+..+.+. +.+++||+||++.
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~--~ev~L~-Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aa   85 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIA--DRLVLL-DLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTV   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-cCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence            468999999999999999999988863  489999 998752   122222   235555666 6789999999997

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.06  E-value=1.9e-05  Score=66.54  Aligned_cols=68  Identities=9%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceeccCchhhh-cCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVV-EYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~-~~aDvI~lav~~~   82 (276)
                      ..+++.|+|+|.||.+++..|.+.|.    +|+++ +|++++++.+.+ .+    +.. .+..++. ..+|+||.+++..
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~----~V~v~-~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~~~~DivVn~t~~~  191 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQA-LSMDELEGHEFDLIINATSSG  191 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEE-CCSGGGTTCCCSEEEECCSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHhhccCCeeE-ecHHHhccCCCCEEEECCCCC
Confidence            45799999999999999999999997    99999 999999887765 22    222 2333333 4899999998754

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=98.06  E-value=7.3e-06  Score=70.57  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh--CCCCCCCeEEEEeCCCHHH-HHHHH-HcCcee-ccCchhhh-----cCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAK--SGVLPPDRICTAVHSNLKR-RDAFE-SIGVKV-LSDNNAVV-----EYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~~-~~~l~-~~g~~~-~~~~~~~~-----~~aDvI~la   78 (276)
                      +++||||||+|.||..++..|.+  .+.    ++...+++++++ .+.+. +.|+.. ..+.++++     .+.|+||+|
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~----elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~a   78 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYL----EMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDA   78 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSE----EEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCe----EEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEEC
Confidence            46899999999999999998855  233    555333999887 44544 477753 34445554     358999999


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      +|+....+.....
T Consensus        79 tp~~~h~~~a~~a   91 (312)
T 1nvm_B           79 TSASAHVQNEALL   91 (312)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            9977655555444

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.06  E-value=2.8e-06  Score=73.99  Aligned_cols=88  Identities=11%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH----cCc--eeccCchhhhc--CCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES----IGV--KVLSDNNAVVE--YSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~----~g~--~~~~~~~~~~~--~aDvI~lav~   80 (276)
                      ++||||||+|.+|...+..| ..+.    +|..++|+++ ++.+.+.+    .|+  ..++|.+++++  +.|+|++|+|
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~~----~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp   76 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEEC----SITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV   76 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTTE----EEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred             ceEEEEEccchhHHHHHHhc-CCCc----EEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            47999999999998777776 4455    7764339887 34444332    454  67788888876  4899999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCC
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      +....++.....+.|    ++++..+
T Consensus        77 ~~~H~~~~~~al~aG----khVl~EK   98 (337)
T 3ip3_A           77 FSLNGKILLEALERK----IHAFVEK   98 (337)
T ss_dssp             HHHHHHHHHHHHHTT----CEEEECS
T ss_pred             cchHHHHHHHHHHCC----CcEEEeC
Confidence            886555554442223    5556444

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.06  E-value=5.2e-06  Score=75.37  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=54.1

Q ss_pred             CCCeEEEEcccHH-HHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHH--------c--C--ceeccCchhhhcCCC
Q 023866            9 ESFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~~aD   73 (276)
                      ..+||+|||+|.. |.+++..|.+.  ++ +..+|.+| |+++++++...+        .  .  +..++|..+++++||
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l-~~~eV~L~-Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD  104 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVD  104 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCC-CCCEEEEE-eCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCC
Confidence            3469999999998 66678778776  32 22389999 999988655322        1  2  333456668889999


Q ss_pred             EEEEeeCcccHH
Q 023866           74 VVVFSVKPQVDK   85 (276)
Q Consensus        74 vI~lav~~~~~~   85 (276)
                      +||++++....+
T Consensus       105 ~VViaag~~~~~  116 (472)
T 1u8x_X          105 FVMAHIRVGKYA  116 (472)
T ss_dssp             EEEECCCTTHHH
T ss_pred             EEEEcCCCcccc
Confidence            999999876543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.06  E-value=1e-05  Score=68.64  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceeccCchhhhcCCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      .+.+++.|+|+|.||.+++..|.+.|.   .+|+++ +|++++++.+.+ .+    +... +..++..++|+||-|+|..
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~-~~~~l~~~aDiIInaTp~g  198 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQP---ASITVT-NRTFAKAEQLAELVAAYGEVKAQ-AFEQLKQSYDVIINSTSAS  198 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCC---SEEEEE-ESSHHHHHHHHHHHGGGSCEEEE-EGGGCCSCEEEEEECSCCC
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCC---CeEEEE-ECCHHHHHHHHHHhhccCCeeEe-eHHHhcCCCCEEEEcCcCC
Confidence            356799999999999999999999884   389999 999999888766 22    3322 3444447899999999864


Q ss_pred             c
Q 023866           83 V   83 (276)
Q Consensus        83 ~   83 (276)
                      .
T Consensus       199 m  199 (281)
T 3o8q_A          199 L  199 (281)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.05  E-value=1.6e-05  Score=70.89  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~   85 (276)
                      ...++++|||+|.+|..+|+.+...|.    +|+++ ++++.+.......|..+. +..++++.+|+|++++.... + .
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa----~Viv~-d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~~lI~~  318 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGA----RVKVT-EVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNKDVITI  318 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSSSSBCH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCccccCH
Confidence            356899999999999999999999998    99999 999987665555787654 67889999999999875433 2 4


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +.+..+
T Consensus       319 e~l~~M  324 (464)
T 3n58_A          319 DHMRKM  324 (464)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            566555

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.04  E-value=1.8e-05  Score=70.81  Aligned_cols=70  Identities=14%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCc--h----hh-hcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--N----AV-VEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~----~~-~~~aDvI~lav~   80 (276)
                      ..++|.|+|+|.+|..+++.|.+.|+    +|+++ ++++++++.+++.|+.+ ..|.  .    ++ ++++|+||++++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~----~vvvI-d~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~   77 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV----KMVVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID   77 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence            45789999999999999999999999    99999 99999999998877653 2222  1    22 578999999998


Q ss_pred             ccc
Q 023866           81 PQV   83 (276)
Q Consensus        81 ~~~   83 (276)
                      +..
T Consensus        78 ~~~   80 (413)
T 3l9w_A           78 DPQ   80 (413)
T ss_dssp             SHH
T ss_pred             ChH
Confidence            754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.03  E-value=2e-05  Score=68.09  Aligned_cols=67  Identities=13%  Similarity=0.060  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH----HHc-------CceeccCchhhhcCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ESI-------GVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l----~~~-------g~~~~~~~~~~~~~aDvI~l   77 (276)
                      ..+||+|||+|.||.+++..|...|++  .+|.++ |+++++++..    .+.       .+..+++.++ +++||+||+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~--~ev~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIi   95 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLA--DEVALV-DVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVI   95 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCC--SEEEEE-CSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-ECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEE
Confidence            468999999999999999999988863  389999 9998876542    221       1233455654 899999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      +.
T Consensus        96 ta   97 (330)
T 3ldh_A           96 TA   97 (330)
T ss_dssp             CC
T ss_pred             eC
Confidence            86

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.03  E-value=6.8e-06  Score=69.63  Aligned_cols=98  Identities=14%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHH-----HHHHH---HcCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKR-----RDAFE---SIGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      .++||+|+| +|+||+.+++.+.+. ++    ++...++|+++.     +..+.   ..|+.++++.++++.++|+||-+
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~----eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDV----ELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSE----EEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            457999999 899999999988754 44    655444886432     11111   24677788888988999999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCCCCcccHHHH
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRW  115 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l  115 (276)
                      ++|..+.+.+....+.|    .+++....|. +.+++
T Consensus        96 T~p~a~~~~~~~~l~~G----v~vViGTTG~-~~e~~  127 (288)
T 3ijp_A           96 SQPQASVLYANYAAQKS----LIHIIGTTGF-SKTEE  127 (288)
T ss_dssp             SCHHHHHHHHHHHHHHT----CEEEECCCCC-CHHHH
T ss_pred             CCHHHHHHHHHHHHHcC----CCEEEECCCC-CHHHH
Confidence            99887766665543333    5666666777 65443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.03  E-value=2.9e-06  Score=71.69  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHh-CCCCCCCeEE-EEeCCCHHHH--HHHH------HcCceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAK-SGVLPPDRIC-TAVHSNLKRR--DAFE------SIGVKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~-~g~~~~~~V~-v~~~r~~~~~--~~l~------~~g~~~~~~~~~~~~~aDvI~   76 (276)
                      |.+|||+|+|+ |.||+.+++.+.+ .++    ++. ++ ++++++.  +.+.      ..++.++++..+++.++|+||
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~----elva~~-d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV----QLGAAL-EREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFI   77 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCCEE-CCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEE
Confidence            34589999999 9999999998774 455    766 55 8876431  1111      124555667778788999999


Q ss_pred             EeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHH
Q 023866           77 FSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE  117 (276)
Q Consensus        77 lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~  117 (276)
                      -+++|....+.+....+.|    .+++..+.|. +.++.++
T Consensus        78 Dft~p~~~~~~~~~a~~~G----~~vVigTtG~-~~e~~~~  113 (273)
T 1dih_A           78 DFTRPEGTLNHLAFCRQHG----KGMVIGTTGF-DEAGKQA  113 (273)
T ss_dssp             ECSCHHHHHHHHHHHHHTT----CEEEECCCCC-CHHHHHH
T ss_pred             EcCChHHHHHHHHHHHhCC----CCEEEECCCC-CHHHHHH
Confidence            7778877776666553333    5566655677 6654433

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.02  E-value=2e-05  Score=70.15  Aligned_cols=77  Identities=12%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccH-HH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVD-KA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~-~~   86 (276)
                      ..++++|+|+|.+|..+++.+...|.    +|+++ ++++.+.......|... .+..+++..+|+||+|.- +..+ .+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga----~Viv~-D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~lI~~e  292 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGS----IVYVT-EIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNVVTRE  292 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCHH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-eCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcccCCHH
Confidence            46899999999999999999999998    99999 99998776666677654 367889999999999853 2223 35


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      .+..+
T Consensus       293 ~l~~M  297 (435)
T 3gvp_A          293 HLDRM  297 (435)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            66555

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.02  E-value=1.3e-05  Score=69.72  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH-----cCceeccCchhhhcCCCEEEE
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDvI~l   77 (276)
                      |.++||+|||+ |.+|++++..+...|..  .+|.++ |+++++++.    +..     ..+..+++..+++++||+||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~--~evvLi-Di~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvi   82 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLT--PNLCLY-DPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVS   82 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCC--SCEEEE-CSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCC--CEEEEE-eCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEE
Confidence            56789999998 99999999999988852  279999 999887654    333     134445566678899999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      +.
T Consensus        83 ta   84 (343)
T 3fi9_A           83 SG   84 (343)
T ss_dssp             CC
T ss_pred             cc
Confidence            86

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.02  E-value=6.3e-06  Score=72.92  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=55.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee------ccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDvI~lav~   80 (276)
                      ...+|+|||+|.||..+++.+...|.    +|+++ ||++++++.+.+ .|...      ..+..+.+..+|+||.|+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga----~V~~~-d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA----TVTVL-DINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCC
Confidence            46899999999999999999999998    99999 999999888876 56532      1234566778999999885

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.02  E-value=2.7e-05  Score=67.27  Aligned_cols=69  Identities=16%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHHc-----CceeccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      +.+||+|||+|.+|.+++..|...+++  .+|.++ |+++++++.    +.+.     .+.+..+..+++++||+||+++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~ev~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~   82 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTA--NELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   82 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCS--SEEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcC
Confidence            357999999999999999999988763  489999 999876442    2221     2233334467789999999998


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      +
T Consensus        83 g   83 (318)
T 1y6j_A           83 G   83 (318)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.01  E-value=2.5e-05  Score=67.42  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-----cCceeccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      +.+||+|||+|.+|.+++..|...+++  .+|.++ |+++++++...    +     ..+.+..+..+++++||+||++.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIA--EEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITA   80 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECC
Confidence            348999999999999999999888763  489999 99988876422    2     12334445667799999999998


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      .
T Consensus        81 g   81 (318)
T 1ez4_A           81 G   81 (318)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.01  E-value=2.4e-05  Score=70.34  Aligned_cols=93  Identities=19%  Similarity=0.289  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhC--------CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKS--------GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV   76 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~--------g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~   76 (276)
                      +|+..||||||+|.||+.+++.|.+.        |.  .-+|...++|++++.+.+. .+...+++..++++  +.|+|+
T Consensus         7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVv   83 (444)
T 3mtj_A            7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGR--EIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVV   83 (444)
T ss_dssp             SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSS--CEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEE
T ss_pred             hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEE
Confidence            35678999999999999998877531        21  1155433399998877663 35566778888876  579999


Q ss_pred             EeeCc-ccHHHHHHHHhhccccccCCcccCC
Q 023866           77 FSVKP-QVDKAAVITEEAFGFCCCRSEIERP  106 (276)
Q Consensus        77 lav~~-~~~~~vl~~~~~~~~~~~~~~l~~~  106 (276)
                      .++|+ +...+......+.|    +.++..+
T Consensus        84 e~tp~~~~h~~~~~~AL~aG----KhVvten  110 (444)
T 3mtj_A           84 ELIGGLEPARELVMQAIANG----KHVVTAN  110 (444)
T ss_dssp             ECCCSSTTHHHHHHHHHHTT----CEEEECC
T ss_pred             EcCCCchHHHHHHHHHHHcC----CEEEECC
Confidence            99986 55445443332222    5666554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.99  E-value=1.9e-05  Score=67.91  Aligned_cols=64  Identities=20%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---c-------C--ceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDvI~la   78 (276)
                      +||+|||+|.||.+++..|...|++   +|.++ |+++++++....   .       .  +..+++. +.+++||+||++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~---~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a   77 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG---DIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVT   77 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS---EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC---eEEEE-eCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEc
Confidence            7999999999999999999988853   58888 999877653221   1       2  2233455 778999999999


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      +
T Consensus        78 ~   78 (309)
T 1ur5_A           78 S   78 (309)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.97  E-value=3.2e-05  Score=66.63  Aligned_cols=68  Identities=18%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHHH----HHH------cCceec-cCchhhhcCCCE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDA----FES------IGVKVL-SDNNAVVEYSDV   74 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~----l~~------~g~~~~-~~~~~~~~~aDv   74 (276)
                      |+.+||+|||+|.||.+++..|...|+   .+|.++ |++  +++.+-    +.+      ....+. ++..+.+++||+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~---~~v~l~-D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDv   81 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKEL---ADVVLV-DIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDV   81 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCE
Confidence            346799999999999999999998886   489999 999  444432    111      122222 233567899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++.
T Consensus        82 VIiaa   86 (315)
T 3tl2_A           82 VVITA   86 (315)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99997

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.96  E-value=3.1e-05  Score=65.29  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC---ceeccCchhhh-cCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG---VKVLSDNNAVV-EYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g---~~~~~~~~~~~-~~aDvI~lav~~~   82 (276)
                      +.+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|++++++.+.+ .+   +... +..++. .++|+||-++|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~-~~~~l~~~~~DivInaTp~g  192 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGP---SELVIA-NRDMAKALALRNELDHSRLRIS-RYEALEGQSFDIVVNATSAS  192 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCC---SEEEEE-CSCHHHHHHHHHHHCCTTEEEE-CSGGGTTCCCSEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhccCCeeEe-eHHHhcccCCCEEEECCCCC
Confidence            56799999999999999999999984   389999 999999988876 22   3322 233332 6899999999854

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.94  E-value=2e-05  Score=68.49  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCc------------------eeccCchhhhc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV------------------KVLSDNNAVVE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~------------------~~~~~~~~~~~   70 (276)
                      ++||||||+|.||..+++.|.+...   -+|...++++++++..+.+ .|+                  .+..+..++..
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~   78 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCCC---CEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence            3699999999999999999876532   2665444888777665544 442                  33456677778


Q ss_pred             CCCEEEEeeCcccHHHHHH
Q 023866           71 YSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        71 ~aDvI~lav~~~~~~~vl~   89 (276)
                      ++|+||+|+|+....+...
T Consensus        79 ~vDvV~~aTp~~~h~~~a~   97 (334)
T 2czc_A           79 KVDIIVDATPGGIGAKNKP   97 (334)
T ss_dssp             TCSEEEECCSTTHHHHHHH
T ss_pred             CCCEEEECCCccccHHHHH
Confidence            9999999999876444333

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.94  E-value=3.4e-05  Score=66.78  Aligned_cols=69  Identities=12%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHHc-----C--ceeccCchhhhcCCCEE
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----G--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g--~~~~~~~~~~~~~aDvI   75 (276)
                      +...+||+|||+|.||.+++..|+..|+  ..+|.++ |+++++++.    +.+.     .  +..+.+. +.+++||+|
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~--~~el~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiV   91 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDL--ADELALV-DVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLV   91 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCC--CceEEEE-eCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEE
Confidence            4567899999999999999999998886  3489999 999887654    3321     1  1223444 468999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      |++.
T Consensus        92 vi~a   95 (331)
T 4aj2_A           92 IITA   95 (331)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            9986

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.92  E-value=1.8e-05  Score=70.51  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--------------------------
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--------------------------   63 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--------------------------   63 (276)
                      ..+|+|||+|.+|...++.+...|.    +|+++ ||++++.+.+.+.|.....                          
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~v~-D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  246 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEM  246 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHH
Confidence            5799999999999999999999998    89999 9999998888777765431                          


Q ss_pred             -CchhhhcCCCEEEEee
Q 023866           64 -DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        64 -~~~~~~~~aDvI~lav   79 (276)
                       +..+.+..+|+||.++
T Consensus       247 ~~l~e~~~~aDvVI~~~  263 (401)
T 1x13_A          247 ELFAAQAKEVDIIVTTA  263 (401)
T ss_dssp             HHHHHHHHHCSEEEECC
T ss_pred             HHHHHHhCCCCEEEECC
Confidence             1345667899999994

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.91  E-value=3.1e-05  Score=65.86  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      +.+||+|+|+ |+||..+++.+.+.|+    ++. .+ ++.....   ...|+.++.+..++.+  ++|++++++||+.+
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~----~~v~~V-nP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~   77 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGT----KIVAGV-TPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAA   77 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCC----eEEEEE-CCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecCHHHH
Confidence            4579999998 9999999999999898    643 34 5543100   1268888888888887  89999999999999


Q ss_pred             HHHHHHHhhccccccCCcccCCCCcccHH
Q 023866           85 KAAVITEEAFGFCCCRSEIERPSGLQRWS  113 (276)
Q Consensus        85 ~~vl~~~~~~~~~~~~~~l~~~~g~~~~~  113 (276)
                      .+++.+..+.|.   +.++-...|+ +.+
T Consensus        78 ~~~~~ea~~~Gi---~~vVi~t~G~-~~~  102 (288)
T 1oi7_A           78 ADAALEAAHAGI---PLIVLITEGI-PTL  102 (288)
T ss_dssp             HHHHHHHHHTTC---SEEEECCSCC-CHH
T ss_pred             HHHHHHHHHCCC---CEEEEECCCC-CHH
Confidence            999888754443   2233333677 553

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.91  E-value=2.3e-05  Score=70.35  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-C----------------------ceecc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-G----------------------VKVLS   63 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g----------------------~~~~~   63 (276)
                      ++..||||||+|.||+.++..+.+.   +.-+|..++||++++++.+.+ . |                      ..+++
T Consensus        21 ~k~IRVGIIGaG~iG~~~~~~l~~~---~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           21 GKPIRIGLIGAGEMGTDIVTQVARM---QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             TCCEEEEEECCSHHHHHHHHHHTTS---SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             CCceEEEEECChHHHHHHHHHHhhC---CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEEC
Confidence            3568999999999999999887653   112565444999999877654 2 4                      34667


Q ss_pred             Cchhhhc--CCCEEEEeeCcc
Q 023866           64 DNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus        64 ~~~~~~~--~aDvI~lav~~~   82 (276)
                      |..++++  +.|+|++|+++.
T Consensus        98 D~eeLL~d~dIDaVviaTp~p  118 (446)
T 3upl_A           98 DNDLILSNPLIDVIIDATGIP  118 (446)
T ss_dssp             CHHHHHTCTTCCEEEECSCCH
T ss_pred             CHHHHhcCCCCCEEEEcCCCh
Confidence            8888876  589999999753

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.90  E-value=1.9e-05  Score=68.64  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cH---
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VD---   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~---   84 (276)
                      ..+++||||+|++|+.+++.+..-|.    +|.+| |+.+..  ...+.++.. .+.++++++||+|++.+|-. ..   
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGM----KVLCY-DVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCc----eeeec-CCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccC
Confidence            35799999999999999999998898    99999 886542  333456654 46889999999999999732 12   


Q ss_pred             --HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcCCCcEE
Q 023866           85 --KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRFI  125 (276)
Q Consensus        85 --~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~vv  125 (276)
                        .+.+..+.     ++.-+++.. .+++..+.|-+.+...++.
T Consensus       212 i~~~~l~~mk-----~~a~lIN~aRG~iVde~aL~~aL~~g~i~  250 (334)
T 3kb6_A          212 INEERISLMK-----DGVYLINTARGKVVDTDALYRAYQRGKFS  250 (334)
T ss_dssp             BCHHHHHHSC-----TTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred             cCHHHHhhcC-----CCeEEEecCccccccHHHHHHHHHhCCce
Confidence              34444441     111123322 4444566676666533443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.88  E-value=2.4e-05  Score=68.98  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee------ccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|+|+|+|.+|..+++.+...|.    +|+++ ||++++.+.+.+ .|..+      ..+..+.+..+|+||.+++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga----~V~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA----QVTIL-DVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            45899999999999999999999998    99999 999999887766 55432      12334567789999999863

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.87  E-value=4.6e-05  Score=65.54  Aligned_cols=67  Identities=21%  Similarity=0.258  Sum_probs=51.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-H--c------CceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-S--I------GVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~--~------g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      |||+|||+|.+|.+++..|...+.  -.+|.++ |+++++++... +  .      .+.+..+..+++++||+||++..
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~--~~el~L~-Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGV--AREVVLV-DLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEE-CSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCC
Confidence            699999999999999999988874  2489999 99988776422 1  1      23333345677899999999874

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.86  E-value=5.4e-05  Score=65.00  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H------cCce--eccCchhhhcCCCEEEEee
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVK--VLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~------~g~~--~~~~~~~~~~~aDvI~lav   79 (276)
                      ||+|||+|.||.+++..|...++   .+|.++ |+++++++...    +      ....  .+.+. +++++||+||++.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~a   75 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY---DDLLLI-ARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTA   75 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC---SCEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC---CEEEEE-cCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeC
Confidence            79999999999999999988776   379999 99987765321    1      1322  33454 6789999999997


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      .
T Consensus        76 g   76 (308)
T 2d4a_B           76 G   76 (308)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.86  E-value=2.2e-05  Score=71.07  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC-cee----cc---CchhhhcCCCEEEEe
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV----LS---DNNAVVEYSDVVVFS   78 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~----~~---~~~~~~~~aDvI~la   78 (276)
                      |.+++|.|+|+|.||.+++..|.+.|+    +|+++ +|++++++.+.+ .+ +..    ..   +..++++++|+||.+
T Consensus         1 M~~k~VlViGaG~iG~~ia~~L~~~G~----~V~v~-~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            1 MATKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-ECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            456799999999999999999999998    89999 999998887765 22 321    11   223556789999999


Q ss_pred             eCcccH
Q 023866           79 VKPQVD   84 (276)
Q Consensus        79 v~~~~~   84 (276)
                      +++...
T Consensus        76 a~~~~~   81 (450)
T 1ff9_A           76 IPYTFH   81 (450)
T ss_dssp             CC--CH
T ss_pred             Cccccc
Confidence            987543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.85  E-value=2.6e-05  Score=70.81  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCcee--c--c---CchhhhcCCCEEEEe
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV--L--S---DNNAVVEYSDVVVFS   78 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~--~---~~~~~~~~aDvI~la   78 (276)
                      .++++|.|||+|.+|.+++..|.+. |+    +|+++ +|++++++.+.+ .++..  .  .   +..++++++|+||.|
T Consensus        21 l~~k~VlIiGAGgiG~aia~~L~~~~g~----~V~v~-~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           21 HMGKNVLLLGSGFVAQPVIDTLAANDDI----NVTVA-CRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             --CEEEEEECCSTTHHHHHHHHHTSTTE----EEEEE-ESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             CCCCEEEEECChHHHHHHHHHHHhCCCC----eEEEE-ECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            4567899999999999999999988 66    89999 999999888865 34431  1  1   223556789999999


Q ss_pred             eCcccHHHH
Q 023866           79 VKPQVDKAA   87 (276)
Q Consensus        79 v~~~~~~~v   87 (276)
                      +++.....+
T Consensus        96 tp~~~~~~v  104 (467)
T 2axq_A           96 IPYTFHPNV  104 (467)
T ss_dssp             SCGGGHHHH
T ss_pred             CchhhhHHH
Confidence            987643333

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.85  E-value=4.6e-05  Score=65.96  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceec--cCchhhh-cCCCEEEEe--e
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVV-EYSDVVVFS--V   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~-~~aDvI~la--v   79 (276)
                      .+++||.|||.|.+|.+ +|+.|.+.|+    +|+++ |+++  ...+.|++.|+.+.  .+..++. .++|+||.+  +
T Consensus         2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~----~V~~~-D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            2 NAMKHIHIIGIGGTFMGGLAAIAKEAGF----EVSGC-DAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             -CCCEEEEESCCSHHHHHHHHHHHHTTC----EEEEE-ESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred             CCCcEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-cCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence            35789999999999996 9999999999    99999 8764  35677888888764  3444444 479999996  5


Q ss_pred             Ccc
Q 023866           80 KPQ   82 (276)
Q Consensus        80 ~~~   82 (276)
                      |++
T Consensus        77 ~~~   79 (326)
T 3eag_A           77 KRG   79 (326)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.83  E-value=3.9e-05  Score=69.62  Aligned_cols=70  Identities=13%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee-ccCc--h----hh-hcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDN--N----AV-VEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~~--~----~~-~~~aDvI~lav   79 (276)
                      +.|||-|+|+|.+|..+|+.|.+.||    +|++. |+++++++.+.+ .++.+ ..+.  .    ++ +++||+++.++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t   76 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENN----DITIV-DKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT   76 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTE----EEEEE-ESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence            56899999999999999999999999    99999 999999998876 56542 2221  1    22 57899988777


Q ss_pred             Cccc
Q 023866           80 KPQV   83 (276)
Q Consensus        80 ~~~~   83 (276)
                      ..+.
T Consensus        77 ~~De   80 (461)
T 4g65_A           77 NTDE   80 (461)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            7654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.82  E-value=3.5e-05  Score=65.32  Aligned_cols=69  Identities=22%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-----C--ceecc--CchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-----G--VKVLS--DNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-----g--~~~~~--~~~~~~~~aDvI~la   78 (276)
                      +.+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|++++++.+.+ .     +  +....  +..+.+.++|+||-|
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEEC
Confidence            46789999999999999999999886   369999 999999887754 1     2  22222  445667789999998


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      +|.
T Consensus       202 Tp~  204 (283)
T 3jyo_A          202 TPM  204 (283)
T ss_dssp             SST
T ss_pred             CCC
Confidence            874

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.81  E-value=7.4e-05  Score=63.58  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH----cC--cee-ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----IG--VKV-LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~g--~~~-~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|++|++++..|...+.+  .++.++ |.++++++    .|.+    .+  ..+ ..+..+.+++||+||++-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-eCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence            7999999999999999999888764  489999 99986643    2332    11  122 223345689999999986

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.81  E-value=2.2e-05  Score=66.49  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|++++++.+.+ .+.....+..+ + ++|+||-++|.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~---~~v~v~-nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~  188 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFA---KDIYVV-TRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPK  188 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCcc
Confidence            46799999999999999999999885   479999 999999988866 22222223333 4 89999999974

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.79  E-value=4.7e-05  Score=67.46  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cC----------------------
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD----------------------   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~----------------------   64 (276)
                      ...+|+|||+|.+|...++.+...|.    +|+++ ||++++.+.+.+.|....  +.                      
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~~~-d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~  245 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  245 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTCEECCC-----------------------C
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence            45799999999999999999999997    89999 999998888877776543  11                      


Q ss_pred             -----chhhhcCCCEEEEee
Q 023866           65 -----NNAVVEYSDVVVFSV   79 (276)
Q Consensus        65 -----~~~~~~~aDvI~lav   79 (276)
                           ..+.+..+|+||.++
T Consensus       246 ~~~~~l~~~~~~aDvVi~~~  265 (384)
T 1l7d_A          246 KQAEAVLKELVKTDIAITTA  265 (384)
T ss_dssp             CHHHHHHHHHTTCSEEEECC
T ss_pred             hhHHHHHHHhCCCCEEEECC
Confidence                 345677899999988

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.78  E-value=5.9e-06  Score=66.98  Aligned_cols=79  Identities=10%  Similarity=0.058  Sum_probs=55.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhc-CCCEEEEeeCcccH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDvI~lav~~~~~   84 (276)
                      +..+|+|||+|++|..+++.+.. .|+    ++..++|.++++..... .|+.  ..++..++++ +.|+|++|+|....
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~~g~----~iVg~~D~dp~k~g~~i-~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~  153 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAA  153 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHH
T ss_pred             CCCEEEEECccHHHHHHHHhHhhcCCc----EEEEEEeCCHHHHhhhh-cCCeeecHHhHHHHHHcCCCEEEEeCCchhH
Confidence            45789999999999999985321 155    66655599887754321 2433  3456666665 58999999998876


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      .++...+.
T Consensus       154 ~ei~~~l~  161 (211)
T 2dt5_A          154 QKAADLLV  161 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67766663

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.77  E-value=7.3e-05  Score=62.96  Aligned_cols=68  Identities=19%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCc--hhhhcCCCEEEEeeC
Q 023866            6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAVVEYSDVVVFSVK   80 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~~~~aDvI~lav~   80 (276)
                      ++| +|||.|.|+|.+|+.++..|++.|+    +|++. +|++++.+.+...++... .|.  .+ +.++|+||-+..
T Consensus         2 ~~m-~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~   72 (286)
T 3ius_A            2 NAM-TGTLLSFGHGYTARVLSRALAPQGW----RIIGT-SRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTA   72 (286)
T ss_dssp             ----CCEEEEETCCHHHHHHHHHHGGGTC----EEEEE-ESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCC
T ss_pred             CCC-cCcEEEECCcHHHHHHHHHHHHCCC----EEEEE-EcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCC
Confidence            444 4799999999999999999999999    99999 999998888777666532 121  12 678999999874

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.76  E-value=6.8e-05  Score=64.24  Aligned_cols=112  Identities=15%  Similarity=0.127  Sum_probs=75.0

Q ss_pred             CCCeEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCccc
Q 023866            9 ESFILGFI-GA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQV   83 (276)
Q Consensus         9 ~~~kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~   83 (276)
                      +..+++|| |+ |++|...++.|.+.|+    ++. .+ +++....+   -.|+.++.+..++.+  ..|+++++||++.
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~----~~v~~V-nP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~~~   83 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYGT----NLVGGT-TPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPPPF   83 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCHHH
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCCC----cEEEEe-CCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCHHH
Confidence            35679999 99 9999999999999998    733 33 44321101   268888888888888  8999999999999


Q ss_pred             HHHHHHHHhhccccccCCcccCCCCcccHH---HHHHHcCCC-cEEEEecCcc
Q 023866           84 DKAAVITEEAFGFCCCRSEIERPSGLQRWS---RWVEWTGHS-RFIRVMPNTP  132 (276)
Q Consensus        84 ~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~~~-~vv~~~p~~~  132 (276)
                      ..+++.+..+.|.   +.++.-..|+ +.+   ++.+..... .+.-..||-+
T Consensus        84 ~~~~~~e~i~~Gi---~~iv~~t~G~-~~~~~~~l~~~a~~~~gi~liGPnc~  132 (305)
T 2fp4_A           84 AAAAINEAIDAEV---PLVVCITEGI-PQQDMVRVKHRLLRQGKTRLIGPNCP  132 (305)
T ss_dssp             HHHHHHHHHHTTC---SEEEECCCCC-CHHHHHHHHHHHTTCSSCEEECSSSC
T ss_pred             HHHHHHHHHHCCC---CEEEEECCCC-ChHHHHHHHHHHHhcCCcEEEeCCCC
Confidence            9999988754443   3323333577 554   344444333 2222336543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.75  E-value=6.5e-05  Score=67.02  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c------Ccee-c------cCchhhhcC--CC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------GVKV-L------SDNNAVVEY--SD   73 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g~~~-~------~~~~~~~~~--aD   73 (276)
                      |+||+|||+|.+|..++..|.+.|.+ ..+|.++ +|++++++.+.+ .      .+.. .      .+..+++++  +|
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~-~~~V~v~-~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREV-FSHITLA-SRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTT-CCEEEEE-ESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC-ceEEEEE-ECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            47999999999999999999988731 0278899 999999887765 1      2321 1      123345555  89


Q ss_pred             EEEEeeCcccHHHHHHHH
Q 023866           74 VVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~   91 (276)
                      +||.++++.....++...
T Consensus        79 vVin~ag~~~~~~v~~a~   96 (405)
T 4ina_A           79 IVLNIALPYQDLTIMEAC   96 (405)
T ss_dssp             EEEECSCGGGHHHHHHHH
T ss_pred             EEEECCCcccChHHHHHH
Confidence            999999887655555443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.75  E-value=0.00019  Score=59.36  Aligned_cols=82  Identities=17%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEeeCcccHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav~~~~~~~v   87 (276)
                      |||+|+|+ |.||+.+++.+.+. ++    ++...++++               .+..++.. ++|+||=++.|..+.+.
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~----elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~   61 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDL----TLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGN   61 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTC----EEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHH
Confidence            58999997 99999999988755 77    877543764               23444443 78999988888888777


Q ss_pred             HHHHhhccccccCCcccCCCCcccHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERPSGLQRWSRWV  116 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~  116 (276)
                      +....+.|    .+++....|. +.++++
T Consensus        62 ~~~a~~~g----~~~VigTTG~-~~e~~~   85 (245)
T 1p9l_A           62 LEFLIDNG----IHAVVGTTGF-TAERFQ   85 (245)
T ss_dssp             HHHHHHTT----CEEEECCCCC-CHHHHH
T ss_pred             HHHHHHcC----CCEEEcCCCC-CHHHHH
Confidence            76553223    5566555677 665443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.74  E-value=9.5e-06  Score=65.60  Aligned_cols=81  Identities=11%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHH--HhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceec--cCchhhhc--CCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGV--AKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l--~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~--~~~~~~~~--~aDvI~lav~~   81 (276)
                      +..+++|||+|++|.++++.+  .+.|+    ++..++|.+++ +.....-.|+.+.  ++..+.++  +.|++++|+|.
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~----~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKM----QISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSE----EEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCe----EEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            456899999999999998874  23455    66655599887 5432001355543  45556665  58999999998


Q ss_pred             ccHHHHHHHHhh
Q 023866           82 QVDKAAVITEEA   93 (276)
Q Consensus        82 ~~~~~vl~~~~~   93 (276)
                      ....++...+.+
T Consensus       159 ~~aq~v~d~lv~  170 (212)
T 3keo_A          159 TEAQEVADILVK  170 (212)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            877777776643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.73  E-value=0.00013  Score=66.07  Aligned_cols=68  Identities=16%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++++|+|+|.+|.++++.|...|.    +|+++ ++++.+.+.....|+.+ .+..++...+|+++.+...
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA----~Viv~-D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~  330 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA----RVIVT-EIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGN  330 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCC
Confidence            356899999999999999999999998    99999 99999888777777765 3567888899999998753

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.70  E-value=0.0013  Score=54.77  Aligned_cols=156  Identities=16%  Similarity=0.202  Sum_probs=102.7

Q ss_pred             CceeccCchhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCC------CCcccHHHHHHH---cC--CCcEE
Q 023866           58 GVKVLSDNNAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERP------SGLQRWSRWVEW---TG--HSRFI  125 (276)
Q Consensus        58 g~~~~~~~~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~---l~--~~~vv  125 (276)
                      |+.+++|..|+++++|++|+-+|-.. -.++++.+        .+++..+      -.+ +.-.+...   +.  +..+.
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakki--------i~~lpEgAII~nTCTi-pp~~ly~~le~l~R~DvgIs  198 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKF--------ADAIPEGAIVTHACTI-PTTKFAKIFKDLGREDLNIT  198 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHH--------GGGSCTTCEEEECSSS-CHHHHHHHHHHTTCTTSEEE
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHH--------HhhCcCCCEEecccCC-CHHHHHHHHHHhCcccCCee
Confidence            77888899999999999999998654 56777777        4445443      333 44333322   33  35667


Q ss_pred             EEecCc-cccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH----
Q 023866          126 RVMPNT-PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGG----  199 (276)
Q Consensus       126 ~~~p~~-~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~----  199 (276)
                      .+||.. |..  +|.+... -.-.++|+++++.++.+..|+. +.+..+....+   +-.+....+....++.+..    
T Consensus       199 S~HPaaVPgt--~Gq~~~g-~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV---~DMgs~vTAv~~AGiL~Y~~~vt  272 (358)
T 2b0j_A          199 SYHPGCVPEM--KGQVYIA-EGYASEEAVNKLYEIGKIARGKAFKMPANLIGPV---CDMCSAVTATVYAGLLAYRDAVT  272 (358)
T ss_dssp             ECBCSSCTTT--CCCEEEE-ESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHH---HSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCC--CCccccc-cccCCHHHHHHHHHHHHHhCCCeEecchhhccch---hhhHHHHHHHHHHHHHHHHHHHH
Confidence            777652 333  3333222 1235899999999999999976 77765433333   3334444444455555442    


Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 023866          200 VAAGLPRELALGLASQTVLGAASMVTKSG  228 (276)
Q Consensus       200 ~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~  228 (276)
                      .-.|-|.+.+.+.+..++...+.++.++|
T Consensus       273 kIlgAP~~mie~q~~esL~tiasLve~~G  301 (358)
T 2b0j_A          273 KILGAPADFAQMMADEALTQIHNLMKEKG  301 (358)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35799999999999999999999998765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.70  E-value=0.00012  Score=59.80  Aligned_cols=68  Identities=19%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc-ee-----ccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KV-----LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~-~~-----~~~~~~~~~~aDvI~lav~   80 (276)
                      ++.|+|.|.|+ |.+|..+++.|++.|+    +|++. +|++++.+.+...++ ..     ..+..+.+..+|+||.+..
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH----EPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            45789999998 9999999999999999    99999 999999888877666 42     2344566788999999874

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.69  E-value=5.9e-05  Score=65.59  Aligned_cols=78  Identities=10%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVV   69 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~   69 (276)
                      ++||||+|+|.||..+++.|.+. ++    ++...++++++...++.. .                  ++.+..+..++.
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~----elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~   76 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDM----KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML   76 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSE----EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCc----EEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHh
Confidence            46999999999999999988764 33    554333777554443332 2                  222223445556


Q ss_pred             cCCCEEEEeeCcccHHHHHHHH
Q 023866           70 EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        70 ~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .++|+||.|+|+....+.....
T Consensus        77 ~~vDvV~~atp~~~~~~~a~~~   98 (337)
T 1cf2_P           77 DEADIVIDCTPEGIGAKNLKMY   98 (337)
T ss_dssp             HTCSEEEECCSTTHHHHHHHHH
T ss_pred             cCCCEEEECCCchhhHHHHHHH
Confidence            7899999999988666555544

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.68  E-value=0.0001  Score=64.09  Aligned_cols=78  Identities=13%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceecc-----------------CchhhhcCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-----------------DNNAVVEYS   72 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-----------------~~~~~~~~a   72 (276)
                      .||||+|+|.||..+++.|.+...   -+|...+++++++...+.. .|+....                 +.+++..++
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~---~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~v   78 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS   78 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCC---CEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCC
Confidence            699999999999999998876432   2565444888766544433 4554332                 222334579


Q ss_pred             CEEEEeeCcccHHHHHHHH
Q 023866           73 DVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        73 DvI~lav~~~~~~~vl~~~   91 (276)
                      |+||.|+|+....+..+..
T Consensus        79 DvV~~aTp~~~s~~~a~~~   97 (340)
T 1b7g_O           79 DIVVDTTPNGVGAQYKPIY   97 (340)
T ss_dssp             SEEEECCSTTHHHHHHHHH
T ss_pred             CEEEECCCCchhHHHHHHH
Confidence            9999999988766665443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.68  E-value=0.00011  Score=61.05  Aligned_cols=76  Identities=11%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHHHHH------cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l~~------~g~~~~--   62 (276)
                      ..+|.|||+|.+|+.++..|.+.|.   .+|+++ |++.                   .|++.+++      .++.+.  
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv---~~i~lv-D~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC---CeEEEE-cCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            4789999999999999999999996   488999 9987                   56655443      133321  


Q ss_pred             c------CchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           63 S------DNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        63 ~------~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      .      +..+.+.++|+||.|++....+..+.
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~  139 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTDNVAVRNQLN  139 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHH
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHH
Confidence            1      12345678999999997655444443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.64  E-value=5.4e-05  Score=68.33  Aligned_cols=73  Identities=12%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHhC--CCCCCCeEEEEeCCCH--HHHHHHH--------Hc--C--ceeccCchhhhcCC
Q 023866           10 SFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNL--KRRDAFE--------SI--G--VKVLSDNNAVVEYS   72 (276)
Q Consensus        10 ~~kIgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~--~~~~~l~--------~~--g--~~~~~~~~~~~~~a   72 (276)
                      .+||+|||+|.. |.+++..|++.  ++ +..+|.+| |+++  ++++...        ..  .  +..++|..+++++|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l-~~~ev~L~-Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHEL-PVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTC-CEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCC-CCCEEEEE-EcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence            479999999999 88888888873  22 23489999 9999  8765422        11  2  23345666889999


Q ss_pred             CEEEEeeCcccH
Q 023866           73 DVVVFSVKPQVD   84 (276)
Q Consensus        73 DvI~lav~~~~~   84 (276)
                      |+||++++....
T Consensus        85 D~VVitagv~~~   96 (450)
T 1s6y_A           85 DFVTTQFRVGGL   96 (450)
T ss_dssp             SEEEECCCTTHH
T ss_pred             CEEEEcCCCCCC
Confidence            999999986543

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.64  E-value=6.6e-05  Score=64.02  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~~~   86 (276)
                      ..++.|+|+ |+||..+++.+.+.|+    + .++ ..+|.+... .-.|+.++.+..++.+  ++|++++++||..+.+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~g~----~-~V~-~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~   85 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLECGT----K-IVG-GVTPGKGGQ-NVHGVPVFDTVKEAVKETDANASVIFVPAPFAKD   85 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHTTC----C-EEE-EECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCC----e-EEE-EeCCCCCCc-eECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHH
Confidence            467889999 9999999999999888    5 333 333432100 0158888888888888  8999999999999998


Q ss_pred             HHHHHhhccccccCCcccCCCCcccHH
Q 023866           87 AVITEEAFGFCCCRSEIERPSGLQRWS  113 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~~g~~~~~  113 (276)
                      ++.+..+.|.   +.++-...|+ +.+
T Consensus        86 ~v~ea~~~Gi---~~vVi~t~G~-~~~  108 (294)
T 2yv1_A           86 AVFEAIDAGI---ELIVVITEHI-PVH  108 (294)
T ss_dssp             HHHHHHHTTC---SEEEECCSCC-CHH
T ss_pred             HHHHHHHCCC---CEEEEECCCC-CHH
Confidence            8888754442   2233333677 553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.60  E-value=7.3e-05  Score=65.67  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---ec----cCchhhhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VL----SDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~~----~~~~~~~~~aDvI~lav~~   81 (276)
                      ..+|.|+|+|.+|.+.+..+...|.    +|+++ ||++++++.+.+.+..   ..    .+..+.+..+|+||-|++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga----~V~v~-dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV  240 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence            4799999999999999999999998    99999 9999999888764321   11    1233456789999999853

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.59  E-value=4.4e-05  Score=63.25  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeE-EEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ..|||+++|+|+||+.+++.  . ++    ++ .+| +   ++...   .|+..++|.++++.++|+|+-|-.++.+.+.
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~l----eLv~v~-~---~k~ge---lgv~a~~d~d~lla~pD~VVe~A~~~av~e~   76 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NF----EKIYAY-D---RISKD---IPGVVRLDEFQVPSDVSTVVECASPEAVKEY   76 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CC----SEEEEE-C---SSCCC---CSSSEECSSCCCCTTCCEEEECSCHHHHHHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-Cc----EEEEEE-e---ccccc---cCceeeCCHHHHhhCCCEEEECCCHHHHHHH
Confidence            36899999999999999997  4 66    66 566 6   33322   2777778888888899999999988888886


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ...+
T Consensus        77 ~~~i   80 (253)
T 1j5p_A           77 SLQI   80 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6666

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.58  E-value=0.00011  Score=63.74  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----HHHHH---HHHcCceec-c------Cc
Q 023866            1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDA---FESIGVKVL-S------DN   65 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~---l~~~g~~~~-~------~~   65 (276)
                      |+..+.+|.+++|.|.|+ |.+|+.++..|++.|+    +|++. .|++    ++.+.   +...++.+. .      +.
T Consensus         1 M~~s~~~M~~~~IlVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l   75 (346)
T 3i6i_A            1 MTVSPVPSPKGRVLIAGATGFIGQFVATASLDAHR----PTYIL-ARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAM   75 (346)
T ss_dssp             ----------CCEEEECTTSHHHHHHHHHHHHTTC----CEEEE-ECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHH
T ss_pred             CCCCCCCCCCCeEEEECCCcHHHHHHHHHHHHCCC----CEEEE-ECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHH
Confidence            566677788889999998 9999999999999998    99999 8866    45443   333565432 1      22


Q ss_pred             hhhhc--CCCEEEEeeCcc---cHHHHHHHH
Q 023866           66 NAVVE--YSDVVVFSVKPQ---VDKAAVITE   91 (276)
Q Consensus        66 ~~~~~--~aDvI~lav~~~---~~~~vl~~~   91 (276)
                      .++++  ++|+||.+....   ....+++..
T Consensus        76 ~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa  106 (346)
T 3i6i_A           76 EKILKEHEIDIVVSTVGGESILDQIALVKAM  106 (346)
T ss_dssp             HHHHHHTTCCEEEECCCGGGGGGHHHHHHHH
T ss_pred             HHHHhhCCCCEEEECCchhhHHHHHHHHHHH
Confidence            34566  899999998653   234455444

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.58  E-value=3.7e-05  Score=66.59  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCC-CC----CCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGV-LP----PDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~-~~----~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +++||||||+|.||+.+++.|.+... +.    .-+|. ++ +|++++.+.+  .....++|.++++ +.|+|+.|+++.
T Consensus         2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~-d~~~~~~~~~--~~~~~~~d~~~ll-~iDvVve~t~~~   77 (332)
T 2ejw_A            2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVL-VRDPRKPRAI--PQELLRAEPFDLL-EADLVVEAMGGV   77 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEE-CSCTTSCCSS--CGGGEESSCCCCT-TCSEEEECCCCS
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEE-ECCHHHhhcc--CcccccCCHHHHh-CCCEEEECCCCc
Confidence            45799999999999999998876520 00    01554 55 8887654322  0113456777878 999999999876


Q ss_pred             c-HHHHHH
Q 023866           83 V-DKAAVI   89 (276)
Q Consensus        83 ~-~~~vl~   89 (276)
                      . ..+...
T Consensus        78 ~~a~~~~~   85 (332)
T 2ejw_A           78 EAPLRLVL   85 (332)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            3 344544

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.54  E-value=0.00046  Score=56.21  Aligned_cols=86  Identities=14%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHc-Cceecc-C-chhhhcCCCE
Q 023866            1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLS-D-NNAVVEYSDV   74 (276)
Q Consensus         1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~-~-~~~~~~~aDv   74 (276)
                      |+-+|..  .+.++|.|||.|.+|..-++.|+++|.    +|+++ +++. +.++.+.+. ++.... . ..+.+.++|+
T Consensus        20 ~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA----~VtVv-ap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adL   94 (223)
T 3dfz_A           20 RHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGA----AITVV-APTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFF   94 (223)
T ss_dssp             --CCEEEECCTTCCEEEECCSHHHHHHHHHHGGGCC----CEEEE-CSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSE
T ss_pred             cCccccEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCE
Confidence            3445555  357899999999999999999999998    99999 7654 335555553 344321 1 1244688999


Q ss_pred             EEEeeCcccHHHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~   91 (276)
                      ||.|+.+..+...+...
T Consensus        95 VIaAT~d~~~N~~I~~~  111 (223)
T 3dfz_A           95 IVVATNDQAVNKFVKQH  111 (223)
T ss_dssp             EEECCCCTHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHH
Confidence            99999877766665554

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.49  E-value=8.7e-05  Score=64.23  Aligned_cols=68  Identities=12%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHHcC----cee---ccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIG----VKV---LSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~g----~~~---~~~~~~~~~~aDvI~la   78 (276)
                      ..|||+||| +|.+|.+++..|...|.  ..+|.++ |++++..  ..+.+..    +..   .++..++++++|+||++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~--~~ev~l~-Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~   83 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPL--VSVLHLY-DVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVP   83 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTT--EEEEEEE-ESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--CCEEEEE-eCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEc
Confidence            457999999 79999999999988872  1289998 9877622  2233321    222   22456778999999999


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        84 a   84 (326)
T 1smk_A           84 A   84 (326)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.49  E-value=0.00026  Score=60.41  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--C-CCEEEEeeCcccHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--Y-SDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~-aDvI~lav~~~~~~   85 (276)
                      ..++.|+|+ |+||..+++.+.+.|+    + .++ ..+|.+... .-.|+.++.+..++.+  . +|++++++||..+.
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~----~-~v~-~VnP~~~g~-~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~   85 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGT----K-VVA-GVTPGKGGS-EVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAP   85 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC----E-EEE-EECTTCTTC-EETTEEEESSHHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCC----c-EEE-EeCCCCCCc-eECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHH
Confidence            457888898 9999999999999898    6 333 223332100 0158888888888876  5 99999999999999


Q ss_pred             HHHHHHhhccccccCCcccCCCCcccHH
Q 023866           86 AAVITEEAFGFCCCRSEIERPSGLQRWS  113 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~~g~~~~~  113 (276)
                      +++.+..+.|.   +.++-...|+ +.+
T Consensus        86 ~~v~ea~~~Gi---~~vVi~t~G~-~~~  109 (297)
T 2yv2_A           86 DAVYEAVDAGI---RLVVVITEGI-PVH  109 (297)
T ss_dssp             HHHHHHHHTTC---SEEEECCCCC-CHH
T ss_pred             HHHHHHHHCCC---CEEEEECCCC-CHH
Confidence            99888754442   2233333677 543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.49  E-value=8.6e-05  Score=54.66  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866            9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus         9 ~~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      +.++|++||+    +..|..+.++|.+.||    +|+-+ +.+.+..     .|...+.+..++-+ .|++++++|++.+
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~v   71 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGH----EFIPV-GRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQNQ   71 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTC----CEEEE-SSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHHH
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCC----eEEEE-CCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHHH
Confidence            4478999998    6799999999999999    88888 7653221     58888888888777 9999999999999


Q ss_pred             HHHHHHHhhccc
Q 023866           85 KAAVITEEAFGF   96 (276)
Q Consensus        85 ~~vl~~~~~~~~   96 (276)
                      .++++++.+.|.
T Consensus        72 ~~~v~e~~~~g~   83 (122)
T 3ff4_A           72 LSEYNYILSLKP   83 (122)
T ss_dssp             GGGHHHHHHHCC
T ss_pred             HHHHHHHHhcCC
Confidence            999888754443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.48  E-value=0.00058  Score=59.50  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav   79 (276)
                      .+.++++|+|+|++|...++.+...|.    +|.++ |+++++.+...+.|.... +..++.. +||+++.|-
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga----kVvvs-D~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A  239 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA  239 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH
Confidence            356899999999999999999999998    99988 999877333334676654 4556666 899998653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.45  E-value=0.00036  Score=56.34  Aligned_cols=65  Identities=17%  Similarity=0.233  Sum_probs=51.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----ccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDvI~lav~   80 (276)
                      |||.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.+.+...++..     .+...+.+..+|+||-+.-
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH----EVLAV-VRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-EecccccccccCCCceEEecccccccHhhcccCCEEEECCc
Confidence            68999997 9999999999999999    99999 99998887765555442     1112256788999999873

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.41  E-value=0.00021  Score=61.55  Aligned_cols=66  Identities=18%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH--HHHHc--C--cee---ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFESI--G--VKV---LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~~~--g--~~~---~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+ |.+|.+++..|...|+  ..+|.++ |+++.+..  .+.+.  .  +..   +++..+++++||+||++.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~--~~ev~L~-Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPL--VSRLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT--CSEEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--CcEEEEE-eCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECC
Confidence            69999998 9999999999998874  2489999 99872222  23221  1  222   135666789999999997

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.40  E-value=0.00044  Score=59.38  Aligned_cols=69  Identities=17%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---HHHHHHHHH-----cCce--ec--cC---chhhhcCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGVK--VL--SD---NNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~-----~g~~--~~--~~---~~~~~~~aD   73 (276)
                      +.+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|+   .++++.+.+     .++.  ..  .+   ..+.+.++|
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga---~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGV---KEISIF-NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCC---CEEEEE-ECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            46789999999999999999999885   379999 999   888877654     2322  11  11   234466899


Q ss_pred             EEEEeeCc
Q 023866           74 VVVFSVKP   81 (276)
Q Consensus        74 vI~lav~~   81 (276)
                      +||-|+|.
T Consensus       229 iIINaTp~  236 (315)
T 3tnl_A          229 IFTNATGV  236 (315)
T ss_dssp             EEEECSST
T ss_pred             EEEECccC
Confidence            99998874

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.40  E-value=0.00035  Score=59.94  Aligned_cols=69  Identities=20%  Similarity=0.293  Sum_probs=51.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---HHHHHHHHH-----cCce--ec--cCc---hhhhcCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGVK--VL--SDN---NAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---~~~~~~l~~-----~g~~--~~--~~~---~~~~~~aD   73 (276)
                      ..+++.|+|+|.+|.+++..|.+.|.   .+|+++ +|+   .++++.+.+     .+..  ..  .+.   .+.+.++|
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~---~~v~v~-nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGI---KEIKLF-NRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-ECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            46799999999999999999999885   479999 999   888877654     2322  11  121   34467789


Q ss_pred             EEEEeeCc
Q 023866           74 VVVFSVKP   81 (276)
Q Consensus        74 vI~lav~~   81 (276)
                      +||-|+|.
T Consensus       223 iIINaTp~  230 (312)
T 3t4e_A          223 ILTNGTKV  230 (312)
T ss_dssp             EEEECSST
T ss_pred             EEEECCcC
Confidence            99888874

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.39  E-value=0.0007  Score=57.88  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHH----HHH-----cCceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      |||+|+| +|.+|.+++..|+..++.  .++.++ |+  ++++++.    +.+     ..+.+..+..++++++|+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIA--DEVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCC--SEEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-cCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEc
Confidence            6999999 999999999999887752  368888 99  8766532    222     1233333346778999999998


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        78 a   78 (303)
T 1o6z_A           78 A   78 (303)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.37  E-value=0.00045  Score=55.53  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----ccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDvI~lav~   80 (276)
                      |||.|+|+ |.+|+.+++.|++.|+    +|++. +|++++.+.+. .++..     .+...+.+..+|+||.+..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH----EVTAI-VRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC----EEEEE-EcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCc
Confidence            68999995 9999999999999999    99999 99998877664 44432     1112256788999999874

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.35  E-value=0.00024  Score=61.58  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC------C--CCCCCeEE-EEeCCCHHHHHH------HH----HcCce-ecc---C
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS------G--VLPPDRIC-TAVHSNLKRRDA------FE----SIGVK-VLS---D   64 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~------g--~~~~~~V~-v~~~r~~~~~~~------l~----~~g~~-~~~---~   64 (276)
                      |+++||||||+|.||+.++..|.+.      |  +    +|. ++ +|++++.+.      +.    ..++. .++   |
T Consensus         4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~----~vvaV~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   78 (331)
T 3c8m_A            4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKF----NVVFVA-DSLHSYYNERIDIGKVISYKEKGSLDSLEYESIS   78 (331)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEE----EEEEEE-CSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECC
T ss_pred             CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcE----EEEEEE-ECChHHhhcccChHHHhhhhccCCcccccCCCCC
Confidence            5568999999999999999988764      2  3    554 55 888765332      11    12332 333   6


Q ss_pred             chhhh-cCCCEEEEeeCcc
Q 023866           65 NNAVV-EYSDVVVFSVKPQ   82 (276)
Q Consensus        65 ~~~~~-~~aDvI~lav~~~   82 (276)
                      .++++ .+.|+|+.|+|+.
T Consensus        79 ~~~ll~~~iDvVv~~t~~~   97 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS   97 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC
T ss_pred             HHHHhCCCCCEEEECCCCC
Confidence            66665 3689999999984

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.35  E-value=0.00041  Score=60.05  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCeEEEEeCCC----HHHHHH----HHHc------CceeccCchhhhc
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSN----LKRRDA----FESI------GVKVLSDNNAVVE   70 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~---~~~~V~v~~~r~----~~~~~~----l~~~------g~~~~~~~~~~~~   70 (276)
                      +.|||+|||+ |.+|++++..|+..|+.   .+.+|.++ |++    +++++.    +.+.      .+....+..++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~-Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL-EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE-cCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence            3479999998 99999999999887752   22378888 998    554432    3331      1223456678889


Q ss_pred             CCCEEEEee
Q 023866           71 YSDVVVFSV   79 (276)
Q Consensus        71 ~aDvI~lav   79 (276)
                      +||+||++.
T Consensus        83 ~aD~Vi~~a   91 (329)
T 1b8p_A           83 DADVALLVG   91 (329)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEeC
Confidence            999999986

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.32  E-value=0.00015  Score=59.43  Aligned_cols=71  Identities=8%  Similarity=0.127  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEE
Q 023866            7 PAESFILGFIG-AGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVF   77 (276)
Q Consensus         7 ~~~~~kIgiIG-~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~l   77 (276)
                      +|.+++|.|.| .|.+|.++++.|++.| +    +|++. +|++++.+.+...++...       .+..++++.+|+||.
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~~-~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTI----KQTLF-ARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTE----EEEEE-ESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEEE-EcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            35567899998 5999999999999999 8    99999 999887654433343321       122355778999998


Q ss_pred             eeCcc
Q 023866           78 SVKPQ   82 (276)
Q Consensus        78 av~~~   82 (276)
                      +....
T Consensus        95 ~a~~~   99 (236)
T 3qvo_A           95 NLTGE   99 (236)
T ss_dssp             ECCST
T ss_pred             cCCCC
Confidence            87543

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.32  E-value=0.00055  Score=58.75  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHH---HHHHHHHc--Cceec----cCchhhhcCCCEEEEee
Q 023866           11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK---RRDAFESI--GVKVL----SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~---~~~~l~~~--g~~~~----~~~~~~~~~aDvI~lav   79 (276)
                      |||+||| +|.+|.+++..|... ++  ..++.++ |+++.   ....+.+.  ...+.    ++..+..++||+||++.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~--~~el~L~-Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~a   77 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCT--TEEEEEE-CSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC--CceEEEE-ecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeC
Confidence            6999999 899999999988765 54  2488999 98861   12233332  22332    24567789999999987

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.31  E-value=0.00027  Score=57.11  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             Ce-EEEEc-ccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHH-HHHHHHH--cCceec-------cCchhhhcCCCEEEE
Q 023866           11 FI-LGFIG-AGKMAESIAKGVA-KSGVLPPDRICTAVHSNLK-RRDAFES--IGVKVL-------SDNNAVVEYSDVVVF   77 (276)
Q Consensus        11 ~k-IgiIG-~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~-~~~~l~~--~g~~~~-------~~~~~~~~~aDvI~l   77 (276)
                      || |.|.| .|.+|.++++.|+ +.|+    +|++. +|+++ +.+.+..  .++...       .+..++++.+|+||.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM----HITLY-GRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC----EEEEE-ESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc----eEEEE-ecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            45 99999 5999999999999 8999    99999 99998 8777642  333321       122356778999999


Q ss_pred             eeCc
Q 023866           78 SVKP   81 (276)
Q Consensus        78 av~~   81 (276)
                      +...
T Consensus        80 ~ag~   83 (221)
T 3r6d_A           80 GAME   83 (221)
T ss_dssp             SCCC
T ss_pred             cCCC
Confidence            8754

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.30  E-value=0.00013  Score=63.06  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC---------CCCCCCeEEEEeCCCHHHHH------HHHH--cCceecc--Cchhhhc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS---------GVLPPDRICTAVHSNLKRRD------AFES--IGVKVLS--DNNAVVE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~---------g~~~~~~V~v~~~r~~~~~~------~l~~--~g~~~~~--~~~~~~~   70 (276)
                      |+||||||+|.||+.+++.|.+.         +.    +|..+++|++++.+      .+..  .....++  |..++++
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~----~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~   77 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEF----KVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVR   77 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCE----EEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHH
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCE----EEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhc
Confidence            57999999999999999998764         33    55533388754421      1221  1122333  6777765


Q ss_pred             --CCCEEEEeeCccc
Q 023866           71 --YSDVVVFSVKPQV   83 (276)
Q Consensus        71 --~aDvI~lav~~~~   83 (276)
                        +.|+|+.|+|++.
T Consensus        78 ~~~iDvVv~~tp~~~   92 (327)
T 3do5_A           78 SADYDVLIEASVTRV   92 (327)
T ss_dssp             HSCCSEEEECCCCC-
T ss_pred             CCCCCEEEECCCCcc
Confidence              5899999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.30  E-value=0.00072  Score=55.33  Aligned_cols=69  Identities=13%  Similarity=0.153  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC---ch---hh-hcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---NN---AV-VEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~~---~~-~~~aDvI~lav~   80 (276)
                      ..++|.|+|+|.+|..+++.|.+.|     .|+++ ++++++.+.+. .|+.+. .|   ..   ++ ++++|.||++++
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g-----~v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE   80 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSE-----EEEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCC-----eEEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence            3578999999999999999998765     27777 99999988887 665432 22   11   22 678999999998


Q ss_pred             cccH
Q 023866           81 PQVD   84 (276)
Q Consensus        81 ~~~~   84 (276)
                      ++..
T Consensus        81 ~d~~   84 (234)
T 2aef_A           81 SDSE   84 (234)
T ss_dssp             CHHH
T ss_pred             CcHH
Confidence            7643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.26  E-value=0.00068  Score=61.27  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----HHHHHHHHcCceec--cCchhhhcC-CCEEEEe--e
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFESIGVKVL--SDNNAVVEY-SDVVVFS--V   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~l~~~g~~~~--~~~~~~~~~-aDvI~la--v   79 (276)
                      ..+||.|||.|..|.+.|+.|.+.|+    +|+++ |+++    ...+.|++.|+.+.  .+..+...+ +|+||++  +
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~----~V~~~-D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi   82 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA----IVTVN-DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI   82 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC----EEEEE-ESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-eCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence            56899999999999999999999999    99999 8754    34567777888754  234445566 8999996  4


Q ss_pred             Ccc
Q 023866           80 KPQ   82 (276)
Q Consensus        80 ~~~   82 (276)
                      |++
T Consensus        83 ~~~   85 (451)
T 3lk7_A           83 PYN   85 (451)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.25  E-value=0.00066  Score=57.54  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----------ceeccCchhhhcCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----------VKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----------~~~~~~~~~~~~~aDvI~l   77 (276)
                      +.+++.|+|+|.||.+++..|.+.|     +|+++ +|++++++.+.+ .+          +.+. +..+...++|+||.
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-----~V~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~DilVn  199 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFS-GLDVDLDGVDIIIN  199 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CTTCCCTTCCEEEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-----CEEEE-ECCHHHHHHHHHHHhhhcccccceeEEEe-eHHHhhCCCCEEEE
Confidence            4578999999999999999998876     89999 999988877654 11          1221 22455678999999


Q ss_pred             eeCc
Q 023866           78 SVKP   81 (276)
Q Consensus        78 av~~   81 (276)
                      +++.
T Consensus       200 ~ag~  203 (287)
T 1nvt_A          200 ATPI  203 (287)
T ss_dssp             CSCT
T ss_pred             CCCC
Confidence            9874

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.19  E-value=0.0016  Score=56.39  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHHc----C------------c-------eec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESI----G------------V-------KVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~----g------------~-------~~~--   62 (276)
                      ++||||+|+|.+|..+++.|.+...   -+|...+++  +++....+.+.    |            +       .+.  
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~~---vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~   79 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE   79 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCCC---cEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEec
Confidence            4699999999999999999876431   266654375  77776665541    1            0       111  


Q ss_pred             cCchhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           63 SDNNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ~~~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .++.++-   .++|+||.|++.....+.....
T Consensus        80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~  111 (335)
T 1u8f_O           80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAH  111 (335)
T ss_dssp             SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGG
T ss_pred             CCHHHCccccCCCCEEEECCCchhhHHHHHHH
Confidence            2444431   4789999999988777666554

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.18  E-value=0.00067  Score=58.54  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=45.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhC-----CCCCCCeEEEEeCCCHHH---------H-HHHHHcC-cee-ccCchhhh
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKS-----GVLPPDRICTAVHSNLKR---------R-DAFESIG-VKV-LSDNNAVV   69 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~-----g~~~~~~V~v~~~r~~~~---------~-~~l~~~g-~~~-~~~~~~~~   69 (276)
                      +|++.||+|||+|.||+.+++.|.+.     |.  .-+|...+|++++.         . +...+.| +.. ..+..+++
T Consensus         1 ~Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~--~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l   78 (325)
T 3ing_A            1 GMKEIRIILMGTGNVGLNVLRIIDASNRRRSAF--SIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDL   78 (325)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHHHHHC--C--EEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGG
T ss_pred             CCceEEEEEEcCcHHHHHHHHHHHhchhhccCC--CEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHh
Confidence            36678999999999999999998763     22  01444333887542         1 1222234 221 11556665


Q ss_pred             c--CCCEEEEeeCcc
Q 023866           70 E--YSDVVVFSVKPQ   82 (276)
Q Consensus        70 ~--~aDvI~lav~~~   82 (276)
                      .  +.|+|+.|+++.
T Consensus        79 ~~~~iDvVVe~T~~~   93 (325)
T 3ing_A           79 MGEAADLLVDCTPAS   93 (325)
T ss_dssp             TTSCCSEEEECCCCC
T ss_pred             cCCCCCEEEECCCCc
Confidence            4  589999999875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.18  E-value=0.0003  Score=55.84  Aligned_cols=66  Identities=15%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----c---CchhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDvI~lav~   80 (276)
                      .|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.+.+...++...    .   +..++++++|+||.+..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC----eEEEE-EeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            379999998 9999999999999998    99999 998876543212233321    1   22345678899998874

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.17  E-value=0.00091  Score=55.57  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHHHHH------cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l~~------~g~~~~--   62 (276)
                      ..+|.|||+|.+|+.++..|...|.   .+++++ |++.                   .|++.+++      .++.+.  
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gv---g~i~lv-D~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGV---GTLVLA-DDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC---SEEEEE-CCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCC---CeEEEE-eCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            5799999999999999999999997   478888 7653                   34443332      233321  


Q ss_pred             c------CchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 S------DNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 ~------~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                      .      +..+.++++|+||.|+.....+..+.+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~  137 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTDNMATRQEINA  137 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence            1      123456779999999875544444433

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.12  E-value=0.0013  Score=57.14  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH---------------------cCceeccCchh
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES---------------------IGVKVLSDNNA   67 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~---------------------~g~~~~~~~~~   67 (276)
                      ++||||+|+|.+|+.+++.|.+. .+    +|..+++++++....+.+                     .++.+..+..+
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~----evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDM----EVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSE----EEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCc----eEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence            36999999999999999998765 34    655443665554433332                     22223334445


Q ss_pred             hhcCCCEEEEeeCcccHHHHHH
Q 023866           68 VVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        68 ~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      +..++|+||.|++.....+..+
T Consensus        78 ~~~~vDiV~eatg~~~s~~~a~   99 (343)
T 2yyy_A           78 IIEDADIVVDGAPKKIGKQNLE   99 (343)
T ss_dssp             TGGGCSEEEECCCTTHHHHHHH
T ss_pred             hccCCCEEEECCCccccHHHHH
Confidence            5568999999998776455443

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.11  E-value=0.00045  Score=59.51  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             CCCCCCCC--CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c------Cchhhhc
Q 023866            1 MDAFPIPA--ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVE   70 (276)
Q Consensus         1 ~~~~~~~~--~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~   70 (276)
                      |+..|.+.  .+|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.+.+...++... .      +..++++
T Consensus         2 m~~~~~~~~~~~M~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~   76 (342)
T 2x4g_A            2 MDEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGH----DLVLI-HRPSSQIQRLAYLEPECRVAEMLDHAGLERALR   76 (342)
T ss_dssp             ----------CCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT
T ss_pred             CCCCcccccccCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ecChHhhhhhccCCeEEEEecCCCHHHHHHHHc
Confidence            45555442  4579999985 9999999999999999    99999 898776554444354321 1      1235567


Q ss_pred             CCCEEEEee
Q 023866           71 YSDVVVFSV   79 (276)
Q Consensus        71 ~aDvI~lav   79 (276)
                      ++|+||-+.
T Consensus        77 ~~d~vih~a   85 (342)
T 2x4g_A           77 GLDGVIFSA   85 (342)
T ss_dssp             TCSEEEEC-
T ss_pred             CCCEEEECC
Confidence            899999876

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.11  E-value=0.00067  Score=59.42  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC-----ceeccCchhhhcCCCE
Q 023866            6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG-----VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g-----~~~~~~~~~~~~~aDv   74 (276)
                      .+|+++||+|+| .|.+|..+++.|.+...   -++...++++ +.-..+..     .+     +.+ .+ .+..+++|+
T Consensus        12 ~~M~~~kV~IiGAtG~iG~~llr~L~~~p~---~elvai~~~~-~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDv   85 (359)
T 1xyg_A           12 KPEKDIRIGLLGASGYTGAEIVRLLANHPH---FQVTLMTADR-KAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDA   85 (359)
T ss_dssp             ---CCEEEEEECCSSHHHHHHHHHHHTCSS---EEEEEEBCST-TTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSE
T ss_pred             ccccCcEEEEECcCCHHHHHHHHHHHcCCC---cEEEEEeCch-hcCCCHHHhCchhcCccccccee-cc-hhHhcCCCE
Confidence            345667999999 79999999999886532   2666552443 22112211     12     112 12 344568999


Q ss_pred             EEEeeCcccHHHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~   91 (276)
                      ||+|+|.....+.....
T Consensus        86 Vf~atp~~~s~~~a~~~  102 (359)
T 1xyg_A           86 VFCCLPHGTTQEIIKEL  102 (359)
T ss_dssp             EEECCCTTTHHHHHHTS
T ss_pred             EEEcCCchhHHHHHHHH
Confidence            99999988766665543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00079  Score=58.87  Aligned_cols=78  Identities=12%  Similarity=0.116  Sum_probs=48.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH----HHHHHHH-----------cCceec-cCchhhhc-C
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFES-----------IGVKVL-SDNNAVVE-Y   71 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~-----------~g~~~~-~~~~~~~~-~   71 (276)
                      ++||+|+| .|.+|..+++.|.+...   -+|... .+++.    ..+....           ..+.+. .++.+..+ +
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~---~ev~~i-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPM---FELTAL-AASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED   83 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSS---EEEEEE-EECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCC---CEEEEE-EcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence            36999999 79999999998876532   266655 33221    1221110           111111 24445446 8


Q ss_pred             CCEEEEeeCcccHHHHHHHH
Q 023866           72 SDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        72 aDvI~lav~~~~~~~vl~~~   91 (276)
                      +|+||+|+|.....+....+
T Consensus        84 ~DvV~~atp~~~~~~~a~~~  103 (354)
T 1ys4_A           84 VDIVFSALPSDLAKKFEPEF  103 (354)
T ss_dssp             CCEEEECCCHHHHHHHHHHH
T ss_pred             CCEEEECCCchHHHHHHHHH
Confidence            99999999988777766665

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.00027  Score=57.23  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----c--cCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----L--SDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~aDvI~lav~   80 (276)
                      .+|||.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.+.+. .++..     .  .+..++++++|+||-+..
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF----EVTAV-VRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC----EEEEE-CSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC----EEEEE-EcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            3589999985 9999999999999998    99999 99987654332 23321     1  123356778999999874


Q ss_pred             c
Q 023866           81 P   81 (276)
Q Consensus        81 ~   81 (276)
                      +
T Consensus        77 ~   77 (227)
T 3dhn_A           77 P   77 (227)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.09  E-value=0.00029  Score=59.33  Aligned_cols=63  Identities=14%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-------ccCchhhhcC-CCEEEEee
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEY-SDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~-aDvI~lav   79 (276)
                      |++|||.|.|+|.+|+.++..|++.|+    +|++. +|++++.    ..++..       ..+..++++. +|+||-+.
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQGH----EVTGL-RRSAQPM----PAGVQTLIADVTRPDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECTTSCC----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCcccc----ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence            456899999999999999999999999    99999 8887652    123221       1123344555 99999876

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.06  E-value=0.0022  Score=55.03  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------cCceec--c------Cchh
Q 023866            4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------IGVKVL--S------DNNA   67 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~g~~~~--~------~~~~   67 (276)
                      .|..++.++|.|.|+ |.+|+.++..|++.|+    +|++. +|++++.+.+.+       .++...  .      +..+
T Consensus         5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~   79 (342)
T 1y1p_A            5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE   79 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred             cccCCCCCEEEEECCccHHHHHHHHHHHHCCC----EEEEE-eCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence            345566789999987 9999999999999999    99999 899877655432       123221  1      2234


Q ss_pred             hhcCCCEEEEee
Q 023866           68 VVEYSDVVVFSV   79 (276)
Q Consensus        68 ~~~~aDvI~lav   79 (276)
                      +++++|+||-+.
T Consensus        80 ~~~~~d~vih~A   91 (342)
T 1y1p_A           80 VIKGAAGVAHIA   91 (342)
T ss_dssp             TTTTCSEEEECC
T ss_pred             HHcCCCEEEEeC
Confidence            566789999876

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.05  E-value=0.0002  Score=61.50  Aligned_cols=70  Identities=16%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCeEEEEeCCCHHH----HHHHHHcCcee-----c--cCchhhhcCCCE
Q 023866            7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKV-----L--SDNNAVVEYSDV   74 (276)
Q Consensus         7 ~~~~~kIgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~----~~~l~~~g~~~-----~--~~~~~~~~~aDv   74 (276)
                      .....++.|||.|.| |..++..|...|.    +|+++ +|+..+    .+.+...-...     +  .+..+.+.+||+
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA----tVtv~-nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADI  248 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV  248 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC----EEEEE-eCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCE
Confidence            346789999999986 9999999999987    89999 998433    22221110111     1  456677889999


Q ss_pred             EEEeeCc
Q 023866           75 VVFSVKP   81 (276)
Q Consensus        75 I~lav~~   81 (276)
                      ||.+|..
T Consensus       249 VIsAtg~  255 (320)
T 1edz_A          249 VITGVPS  255 (320)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999864

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.05  E-value=0.0018  Score=56.20  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHH----HHHHc------CceeccCchhh
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFESI------GVKVLSDNNAV   68 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~~------g~~~~~~~~~~   68 (276)
                      |..|...||+|+|+ |.+|.+++..|.....+.   +.++.++ |.++.  +++    ++...      .+.+.++..++
T Consensus        19 ~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~-Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a   97 (345)
T 4h7p_A           19 PGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLL-DIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVA   97 (345)
T ss_dssp             ---CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHH
T ss_pred             CCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEE-CCCCccccchhhhhhhhhcCccCCCcEEEcCChHHH
Confidence            44566679999996 999999999877654433   2368888 98753  222    23331      23345667788


Q ss_pred             hcCCCEEEEee
Q 023866           69 VEYSDVVVFSV   79 (276)
Q Consensus        69 ~~~aDvI~lav   79 (276)
                      +++||+||++-
T Consensus        98 ~~~advVvi~a  108 (345)
T 4h7p_A           98 FDGVAIAIMCG  108 (345)
T ss_dssp             TTTCSEEEECC
T ss_pred             hCCCCEEEECC
Confidence            99999999974

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.03  E-value=0.0014  Score=55.60  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC------HHHHHHHH---HcCceec-c---C---chhhhcCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFE---SIGVKVL-S---D---NNAVVEYS   72 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l~---~~g~~~~-~---~---~~~~~~~a   72 (276)
                      +++|.|+|+ |.+|+.+++.|++.|+    +|++. +|+      +++.+.+.   ..|+.+. .   +   ..++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC----CEEEE-ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            678999997 9999999999999998    99998 887      44444332   3465432 1   2   23456789


Q ss_pred             CEEEEeeCcc---cHHHHHHHH
Q 023866           73 DVVVFSVKPQ---VDKAAVITE   91 (276)
Q Consensus        73 DvI~lav~~~---~~~~vl~~~   91 (276)
                      |+||.+....   ....+++..
T Consensus        79 d~vi~~a~~~~~~~~~~l~~aa  100 (308)
T 1qyc_A           79 DVVISTVGSLQIESQVNIIKAI  100 (308)
T ss_dssp             SEEEECCCGGGSGGGHHHHHHH
T ss_pred             CEEEECCcchhhhhHHHHHHHH
Confidence            9999988643   234444443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.02  E-value=0.00035  Score=61.00  Aligned_cols=149  Identities=11%  Similarity=-0.001  Sum_probs=78.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCC-CCC--CCeEEEEeCC-CHHH-HHH----HHH-cCceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSG-VLP--PDRICTAVHS-NLKR-RDA----FES-IGVKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g-~~~--~~~V~v~~~r-~~~~-~~~----l~~-~g~~~~~~~~~~~~~aDvI~   76 (276)
                      |.++||+|+| .|.+|+.+.+.|.+.+ + +  .-+|....++ +..+ .+.    +.. ..+.+.....+...++|+||
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~-~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf   85 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAY-ADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVF   85 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHH-HTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCC-CCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEE
Confidence            4568999999 8999999999998765 0 0  1266655233 2222 221    111 12222221223456899999


Q ss_pred             EeeCcccHHHHHHHHhhccccccCCcccCC--CCcccHHHHHHHcCC-Cc--EEEEecCc---cccccCcceEeecCCCC
Q 023866           77 FSVKPQVDKAAVITEEAFGFCCCRSEIERP--SGLQRWSRWVEWTGH-SR--FIRVMPNT---PSAVGEAATVMSLGGTA  148 (276)
Q Consensus        77 lav~~~~~~~vl~~~~~~~~~~~~~~l~~~--~g~~~~~~l~~~l~~-~~--vv~~~p~~---~~~~~~g~~~i~~~~~~  148 (276)
                      +|++.....++...+ +.|    ..++.-.  --..+.+..++|.+. ..  ++...|..   +..+.+ .. +..++++
T Consensus        86 ~alg~~~s~~~~~~~-~~G----~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~-~~-iIanPgC  158 (352)
T 2nqt_A           86 LALPHGHSAVLAQQL-SPE----TLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRG-TR-RIAVPGC  158 (352)
T ss_dssp             ECCTTSCCHHHHHHS-CTT----SEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTT-CS-EEECCCH
T ss_pred             ECCCCcchHHHHHHH-hCC----CEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhc-CC-EEEcCCH
Confidence            999988777776665 323    2233221  111022456677652 12  23444443   122222 12 3335555


Q ss_pred             CHH-HHHHHHHHhhhcC
Q 023866          149 TEE-DGELIGKLFGSVG  164 (276)
Q Consensus       149 ~~~-~~~~v~~ll~~~G  164 (276)
                      ... ..-.+.++.+..+
T Consensus       159 ~tt~~~lal~PL~~~~~  175 (352)
T 2nqt_A          159 YPTAALLALFPALAADL  175 (352)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            544 3456677777766

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.97  E-value=0.00078  Score=58.68  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=48.2

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC---ceeccCchhhhcCCCEEEEe
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG---VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g---~~~~~~~~~~~~~aDvI~la   78 (276)
                      |+++||+|+| .|.+|..+++.|.+...   -++...++++ +.-+.+.+     .|   +.+ .+..+ ..++|+||+|
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~---~elv~v~s~~-~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a   75 (345)
T 2ozp_A            2 TGKKTLSIVGASGYAGGEFLRLALSHPY---LEVKQVTSRR-FAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLA   75 (345)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHTCTT---EEEEEEBCST-TTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHcCCC---cEEEEEECch-hhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEc
Confidence            3568999999 69999999999876532   2666552432 22112221     11   222 22223 4789999999


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      ++.....+.....
T Consensus        76 ~g~~~s~~~a~~~   88 (345)
T 2ozp_A           76 LPHGVFAREFDRY   88 (345)
T ss_dssp             CCTTHHHHTHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9988777766655

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.95  E-value=0.0027  Score=54.43  Aligned_cols=66  Identities=18%  Similarity=0.330  Sum_probs=47.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHH----HHH----c--Cceecc-C--chhhhcCCCE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES----I--GVKVLS-D--NNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~----l~~----~--g~~~~~-~--~~~~~~~aDv   74 (276)
                      |||.|+|+ |.+|++++..|+..|+.  .++.++ |+  ++++++.    +.+    .  .+.+.. +  ..++++++|+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~   77 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV   77 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCC--CEEEEE-cCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCE
Confidence            69999999 99999999999887752  368888 98  7655432    222    1  223332 1  3678899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++.
T Consensus        78 Vi~~A   82 (313)
T 1hye_A           78 VIITS   82 (313)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99986

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.95  E-value=0.0019  Score=54.81  Aligned_cols=66  Identities=14%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHH---HcCceec----c---CchhhhcCCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE---SIGVKVL----S---DNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~---~~g~~~~----~---~~~~~~~~aD   73 (276)
                      +|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|+     +++.+.+.   ..++.+.    .   +..++++.+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d   78 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD   78 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC----cEEEE-ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence            678999985 9999999999999998    99999 888     55554443   3455432    1   2335677899


Q ss_pred             EEEEeeC
Q 023866           74 VVVFSVK   80 (276)
Q Consensus        74 vI~lav~   80 (276)
                      +||.+..
T Consensus        79 ~vi~~a~   85 (313)
T 1qyd_A           79 VVISALA   85 (313)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.94  E-value=0.0027  Score=54.83  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..||.|||+|.+|+.++..|...|.   .+|+++ |++.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGV---g~Itlv-D~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEe-cCCE
Confidence            5799999999999999999999997   478888 7643

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.93  E-value=0.00079  Score=58.34  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--H---HHHH----HHHc-Cceecc--CchhhhcCCCEEE
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--K---RRDA----FESI-GVKVLS--DNNAVVEYSDVVV   76 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~---~~~~----l~~~-g~~~~~--~~~~~~~~aDvI~   76 (276)
                      |+||+|+|+ |.+|..+.+.|.+...   -++...+.++.  +   +...    +... ...+..  +..++.+++|+||
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~---~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf   80 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPH---MNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVF   80 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTT---EEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCC---CcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEE
Confidence            589999995 9999999998877321   26654424331  1   1221    1111 233332  3444448999999


Q ss_pred             EeeCcccHHHHHHHHh
Q 023866           77 FSVKPQVDKAAVITEE   92 (276)
Q Consensus        77 lav~~~~~~~vl~~~~   92 (276)
                      +|+|...-.+....+.
T Consensus        81 ~a~p~~~s~~~~~~~~   96 (337)
T 3dr3_A           81 LATAHEVSHDLAPQFL   96 (337)
T ss_dssp             ECSCHHHHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHH
Confidence            9999887777776653

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=96.88  E-value=0.0025  Score=57.92  Aligned_cols=69  Identities=16%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             CeEEEEcccHHHHH--HHHHHHhCCCCC--CCeEEEEeCCCHHHHHHHH--------HcC----ceeccCchhhhcCCCE
Q 023866           11 FILGFIGAGKMAES--IAKGVAKSGVLP--PDRICTAVHSNLKRRDAFE--------SIG----VKVLSDNNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~G~mG~~--la~~l~~~g~~~--~~~V~v~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~aDv   74 (276)
                      |||+|||+|..|.+  +...+.....+.  ..+|+++ |.++++++...        ..|    +..++|..+++++||+
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~-Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~   79 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLM-DVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF   79 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEE-CSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEE-CCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence            79999999997754  444455432222  2479999 99998875422        123    3345677888999999


Q ss_pred             EEEeeC
Q 023866           75 VVFSVK   80 (276)
Q Consensus        75 I~lav~   80 (276)
                      ||+++-
T Consensus        80 Vi~~~g   85 (477)
T 3u95_A           80 IINTAY   85 (477)
T ss_dssp             EEECCC
T ss_pred             EEECcc
Confidence            999873

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.87  E-value=0.0015  Score=57.03  Aligned_cols=81  Identities=15%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------cCceecc-CchhhhcC
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IGVKVLS-DNNAVVEY   71 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~   71 (276)
                      ++++||||+| .|.+|..+++.|.+..   .-+|...++.+.+.-+.+.+              ..+.+.. +..+ ..+
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p---~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~   77 (350)
T 2ep5_A            2 ADKIKVSLLGSTGMVGQKMVKMLAKHP---YLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKD   77 (350)
T ss_dssp             CCCEEEEEESCSSHHHHHHHHHHTTCS---SEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTT
T ss_pred             CCCcEEEEECcCCHHHHHHHHHHHhCC---CcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcC
Confidence            3568999999 7999999999886542   22665552222221111211              1222222 3333 478


Q ss_pred             CCEEEEeeCcccHHHHHHHHh
Q 023866           72 SDVVVFSVKPQVDKAAVITEE   92 (276)
Q Consensus        72 aDvI~lav~~~~~~~vl~~~~   92 (276)
                      +|+||+|+|.....+......
T Consensus        78 vDvVf~atp~~~s~~~a~~~~   98 (350)
T 2ep5_A           78 VDVVLSALPNELAESIELELV   98 (350)
T ss_dssp             CSEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEECCChHHHHHHHHHHH
Confidence            999999999877666665553

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.87  E-value=0.0025  Score=58.27  Aligned_cols=69  Identities=20%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceecc-CchhhhcCCCEEEEe--eCcc
Q 023866            9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS--VKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDvI~la--v~~~   82 (276)
                      +.++|.|||.|..|.+ +|+.|.+.|+    +|+++ |.++ ...+.|++.|+.+.. ...+.+.++|+||++  +|++
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISAD   94 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTT
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCC----eEEEE-ECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCC
Confidence            4679999999999996 9999999999    99999 8654 345678778987542 233446789999996  5553

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.85  E-value=0.00058  Score=59.37  Aligned_cols=80  Identities=15%  Similarity=0.265  Sum_probs=48.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceecc-CchhhhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++||+|+| .|.+|..+.+.|.+.+| +.-++....+++.. +.-.+....+.+.. +. +...++|+||+|++.....+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~-~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~-~~~~~~DvV~~a~g~~~s~~   83 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAGQRMGFAESSLRVGDVDS-FDFSSVGLAFFAAAAEVSRA   83 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTTCEEEETTEEEECEEGGG-CCGGGCSEEEECSCHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEEecCCCCCCccccCCcceEEecCCH-HHhcCCCEEEEcCCcHHHHH
Confidence            47999999 79999999999887666 33455544244321 10001001112211 22 23568999999999877666


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      .....
T Consensus        84 ~a~~~   88 (340)
T 2hjs_A           84 HAERA   88 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=96.85  E-value=0.0026  Score=56.73  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHh--CCCCCCCeEEEEeCCCHHHHHHHHH-------cCcee--ccCchhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKM-AESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFES-------IGVKV--LSDNNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~m-G~~la~~l~~--~g~~~~~~V~v~~~r~~~~~~~l~~-------~g~~~--~~~~~~~~~~aDvI~l   77 (276)
                      ++||+|||+|.. +..++..|+.  .++ +..+|.++ |.++++++....       ...++  ++|..+++++||+||+
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l-~~~el~L~-Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Vii   79 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDV-RIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIF   79 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTS-CCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCC-CcCEEEEE-eCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEE
Confidence            479999999984 2222334455  332 34589999 999988654322       11333  3455688899999999


Q ss_pred             eeCc
Q 023866           78 SVKP   81 (276)
Q Consensus        78 av~~   81 (276)
                      +.-.
T Consensus        80 tagv   83 (417)
T 1up7_A           80 QFRP   83 (417)
T ss_dssp             CCCT
T ss_pred             cCCC
Confidence            9854

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.81  E-value=0.0053  Score=53.39  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeC-C-CHHHHHHHHH----c----C------------
Q 023866            2 DAFPIPAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVH-S-NLKRRDAFES----I----G------------   58 (276)
Q Consensus         2 ~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~-r-~~~~~~~l~~----~----g------------   58 (276)
                      ++-.+++.++||||+|+|.+|.-+.+.|.+. .+    +|...++ + +.+....+.+    .    +            
T Consensus         9 ~~~~~~~~~ikVgI~G~G~iGr~llR~l~~~p~v----eivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~   84 (354)
T 3cps_A            9 SGRENLYFQGTLGINGFGRIGRLVLRACMERNDI----TVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCIN   84 (354)
T ss_dssp             ---------CEEEEECCSHHHHHHHHHHHTCSSC----EEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEET
T ss_pred             ccccCcCcceEEEEECCCHHHHHHHHHHHcCCCe----EEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEEC
Confidence            3456677788999999999999999988875 33    7665535 3 3332223221    1    1            


Q ss_pred             ---ceecc--Cchhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           59 ---VKVLS--DNNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        59 ---~~~~~--~~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                         +.+..  ++.++.   .++|+||.|++...-.+.....
T Consensus        85 g~~i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~  125 (354)
T 3cps_A           85 GKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLH  125 (354)
T ss_dssp             TEEEEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG
T ss_pred             CeEEEEEecCChHHCCcccCCCCEEEECCCchhhHHHHHHH
Confidence               11221  333332   4799999999987766666554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.80  E-value=0.00053  Score=55.28  Aligned_cols=63  Identities=14%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-----ecc---CchhhhcCCCEEEEeeC
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-----VLS---DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-----~~~---~~~~~~~~aDvI~lav~   80 (276)
                      |||.|.| .|.+|..+++.|++.|+    +|++. +|++++.+.+  .++.     +.+   +..++++++|+||-+..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY----QIYAG-ARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC----EEEEE-ESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence            5899998 69999999999999998    99999 9998765433  2322     111   22345678999999874

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=96.80  E-value=0.00075  Score=59.07  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS   32 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~   32 (276)
                      +++||||||+|.||+.++..|.+.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~   26 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAM   26 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhc
Confidence            457999999999999999999875

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.80  E-value=0.0032  Score=54.55  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=50.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCC--CHHHHHHHHH----cC-----c----------------eec
Q 023866           11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHS--NLKRRDAFES----IG-----V----------------KVL   62 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r--~~~~~~~l~~----~g-----~----------------~~~   62 (276)
                      +||||+|+|.+|..+++.|.+. ++    +|...+++  +++....+.+    .|     .                .+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~v----evvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~   79 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDV----ELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF   79 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSE----EEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCe----EEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence            5999999999999999998765 33    66655363  5555444431    11     0                112


Q ss_pred             c--Cchhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           63 S--DNNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ~--~~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .  ++.++-   .++|+||.|++.....+.....
T Consensus        80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~  113 (337)
T 3e5r_O           80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH  113 (337)
T ss_dssp             CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH
T ss_pred             ecCChHHccccccCCCEEEECCCchhhHHHHHHH
Confidence            1  444431   4799999999988766666554

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.79  E-value=0.0021  Score=54.30  Aligned_cols=66  Identities=14%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHH--HHHHHcCceec-c---C---chhhhcCCCEEEEe
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRR--DAFESIGVKVL-S---D---NNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~--~~l~~~g~~~~-~---~---~~~~~~~aDvI~la   78 (276)
                      +++|.|.|+ |.+|+.+++.|++.| +    +|++. +|++++.  +.+...++.+. .   +   ..++++.+|+||.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~-~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   79 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF----KVRVV-TRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV   79 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS----EEEEE-ESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc----eEEEE-EcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence            578999998 999999999999988 8    99999 8887653  34444565431 1   2   23457789999998


Q ss_pred             eC
Q 023866           79 VK   80 (276)
Q Consensus        79 v~   80 (276)
                      ..
T Consensus        80 a~   81 (299)
T 2wm3_A           80 TN   81 (299)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.78  E-value=0.002  Score=58.10  Aligned_cols=81  Identities=12%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----ccC-----chhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSD-----NNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~-----~~~~~~~aDvI~lav   79 (276)
                      .+||.|||+|.||+.++..+.+..-+...+|++. |++....+.....|+..     ..+     ..+++++.|+||-+.
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~va-D~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s   91 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTII-AAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVS   91 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEE-ESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEe-ccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECC
Confidence            4789999999999999999987653334578888 87665443333345332     223     233555679999988


Q ss_pred             CcccHHHHHHHH
Q 023866           80 KPQVDKAAVITE   91 (276)
Q Consensus        80 ~~~~~~~vl~~~   91 (276)
                      ++....++++..
T Consensus        92 ~~~~~l~Im~ac  103 (480)
T 2ph5_A           92 IGISSLALIILC  103 (480)
T ss_dssp             SSSCHHHHHHHH
T ss_pred             ccccCHHHHHHH
Confidence            888776766655

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.76  E-value=0.0022  Score=54.29  Aligned_cols=67  Identities=18%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------HHHHHH---HHcCceec-c---C---chhhhcC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-------KRRDAF---ESIGVKVL-S---D---NNAVVEY   71 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------~~~~~l---~~~g~~~~-~---~---~~~~~~~   71 (276)
                      +++|.|.|+ |.+|+.+++.|++.|+    +|++. +|++       ++.+.+   ...++.+. .   +   ..++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~   76 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN----PTYAL-VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC----CEEEE-ECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC----cEEEE-ECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence            578999997 9999999999999998    99998 8876       555443   23565431 1   2   2355778


Q ss_pred             CCEEEEeeCc
Q 023866           72 SDVVVFSVKP   81 (276)
Q Consensus        72 aDvI~lav~~   81 (276)
                      +|+||.+...
T Consensus        77 ~d~vi~~a~~   86 (307)
T 2gas_A           77 VDIVICAAGR   86 (307)
T ss_dssp             CSEEEECSSS
T ss_pred             CCEEEECCcc
Confidence            9999998754

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.76  E-value=0.0037  Score=57.51  Aligned_cols=68  Identities=16%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceec--cCchhhhcCCCEEEEe--eCcc
Q 023866           10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVVEYSDVVVFS--VKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~aDvI~la--v~~~   82 (276)
                      .++|.|||.|..|.+ +|+-|.+.|+    +|+++ |++.  ...+.|++.|+.+.  .+...+..++|+||.+  +|+.
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~----~V~~s-D~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~   93 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGH----TVTGS-DANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRG   93 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTT
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCC----EEEEE-CCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCC
Confidence            579999999999986 7888889999    99999 8753  45677888898764  3344444679999996  5654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.73  E-value=0.0012  Score=55.60  Aligned_cols=66  Identities=17%  Similarity=0.066  Sum_probs=51.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceec-c------CchhhhcCCCEEEEeeCc
Q 023866           11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDvI~lav~~   81 (276)
                      |||.|.|+ |.+|+.+++.|.+. |+    +|++. .|++++.+.+...++.+. .      +..++++.+|+||.+..+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~----~V~~~-~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID----HFHIG-VRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT----TEEEE-ESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC----cEEEE-ECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            68999985 99999999999987 88    99999 999887766555555431 1      233567889999998743

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.72  E-value=0.0033  Score=54.17  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCeEEEEeCCCH--HHHH----HHHHc------CceeccCchhhhcCCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNL--KRRD----AFESI------GVKVLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~---~~~~V~v~~~r~~--~~~~----~l~~~------g~~~~~~~~~~~~~aD   73 (276)
                      .|||.|+|+ |.+|+.++..|++.|+.   .+.+|.++ |+++  ++.+    .+.+.      .+....+..++++++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~-D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL-EIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE-eCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCC
Confidence            479999997 99999999999988853   22378898 9874  2222    22221      1222234566788999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||.+-
T Consensus        83 ~Vih~A   88 (327)
T 1y7t_A           83 YALLVG   88 (327)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999975

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.71  E-value=0.0029  Score=54.00  Aligned_cols=78  Identities=12%  Similarity=0.095  Sum_probs=54.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH------HHHHHH---HHcCceec----c---CchhhhcC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAF---ESIGVKVL----S---DNNAVVEY   71 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------~~~~~l---~~~g~~~~----~---~~~~~~~~   71 (276)
                      .+|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++      ++.+.+   ...++.+.    .   +..++++.
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH----PTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC----cEEEE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence            4678999996 9999999999999998    99998 8875      344433   33455421    1   23456778


Q ss_pred             CCEEEEeeCcc---cHHHHHHHH
Q 023866           72 SDVVVFSVKPQ---VDKAAVITE   91 (276)
Q Consensus        72 aDvI~lav~~~---~~~~vl~~~   91 (276)
                      +|+||.+....   ....+++..
T Consensus        78 ~d~vi~~a~~~~~~~~~~l~~aa  100 (321)
T 3c1o_A           78 VDIVISALPFPMISSQIHIINAI  100 (321)
T ss_dssp             CSEEEECCCGGGSGGGHHHHHHH
T ss_pred             CCEEEECCCccchhhHHHHHHHH
Confidence            99999987542   344555444

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.69  E-value=0.0032  Score=53.16  Aligned_cols=44  Identities=14%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+++.|+| +|.+|.+++..|.+.|.    +|+++ +|++++.+.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~----~V~i~-~R~~~~~~~l~~  161 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAAD  161 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-ECCHHHHHHHHH
Confidence            3457899999 89999999999999998    89999 999988776653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.67  E-value=0.005  Score=57.12  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+|+++ |.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGV---G~ItLv-D~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCC
Confidence            5799999999999999999999997   588888 7753

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.64  E-value=0.0029  Score=51.64  Aligned_cols=66  Identities=14%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCcee-----c--cCchhhhcCCCEEEE
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKV-----L--SDNNAVVEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~aDvI~l   77 (276)
                      +++++|.|.|+ |.+|..+++.|++.  |+    +|++. +|++++.+.+ ..++..     .  .+..++++++|+||-
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~----~V~~~-~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~   75 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF----VAKGL-VRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVI   75 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTC----EEEEE-ESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc----EEEEE-EcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence            45789999985 99999999999999  78    99999 9998876654 222221     1  123355678999998


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      +.
T Consensus        76 ~a   77 (253)
T 1xq6_A           76 LT   77 (253)
T ss_dssp             CC
T ss_pred             ec
Confidence            76

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.63  E-value=0.0071  Score=51.24  Aligned_cols=35  Identities=14%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+|+++ |.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGV---G~i~lv-D~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGI---GKLLLF-DYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCCc
Confidence            5789999999999999999999996   478888 8765

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.62  E-value=0.00075  Score=58.56  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=49.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      +++||+|+| .|.+|..+.+.|.+.++ +.-++...++++.. +.-.+....+.+.....+...++|+||+|++...-.+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~   80 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREF-PVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK   80 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH
Confidence            468999999 89999999999887643 22256655243221 1000111112221111223467999999999877666


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      .....
T Consensus        81 ~a~~~   85 (336)
T 2r00_A           81 WAPIA   85 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.59  E-value=0.0038  Score=54.03  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCC---CeEEEEeCCCH--HHH----HHHHHc------CceeccCchhhhcCCC
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPP---DRICTAVHSNL--KRR----DAFESI------GVKVLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~---~~V~v~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~aD   73 (276)
                      .+||+|+| +|.+|++++..|...+.+..   -++.++ |+++  +++    ..+.+.      ++....+..+.+++||
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~-Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD   81 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEE-eCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence            37999999 79999999999988776331   127888 9864  232    233331      2334455567789999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||++-
T Consensus        82 vVvitA   87 (333)
T 5mdh_A           82 VAILVG   87 (333)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999975

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=96.58  E-value=0.0075  Score=54.98  Aligned_cols=65  Identities=22%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceec-cCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDvI~la   78 (276)
                      +.++|.|||.|..|.+ +|+.|.+.|+    +|+++ |.... ..+.+.+.|+.+. ....+.+..+|+||+.
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s   85 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVS   85 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCC----eEEEE-CCCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence            4678999999999997 9999999999    99999 87543 3456777888764 1222345789999986

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=96.57  E-value=0.0069  Score=55.00  Aligned_cols=65  Identities=25%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceec-cCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVL-SDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~-~~~~~~~~~aDvI~la   78 (276)
                      ..++|.|||.|..|.+ +|+.|.+.|+    +|+++ |... ...+.+.+.|+.+. ....+.++.+|+||..
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s   84 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS   84 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCC----EEEEE-CCCCCHHHHHHHhCCCEEECCCCHHHcCCCCEEEEC
Confidence            4678999999999997 9999999999    99999 7654 33456777888764 2222345789999986

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.57  E-value=0.0046  Score=54.20  Aligned_cols=80  Identities=13%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC----HHH----H----HHHHH-cC-ceeccCchhhhcCCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKR----R----DAFES-IG-VKVLSDNNAVVEYSD   73 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~----~----~~l~~-~g-~~~~~~~~~~~~~aD   73 (276)
                      .+..||.|+|+|.+|..+++.|...|.   .+|+++ ||+    .++    +    +.+.+ .+ .....+..++++.+|
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~---~~I~v~-Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD  265 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD  265 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-ECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence            456899999999999999999999885   489999 998    554    2    22333 12 122356788899999


Q ss_pred             EEEEeeCccc-HHHHHHHH
Q 023866           74 VVVFSVKPQV-DKAAVITE   91 (276)
Q Consensus        74 vI~lav~~~~-~~~vl~~~   91 (276)
                      ++|=+..|.. .+++++.+
T Consensus       266 VlIG~Sap~l~t~emVk~M  284 (388)
T 1vl6_A          266 FFIGVSRGNILKPEWIKKM  284 (388)
T ss_dssp             EEEECSCSSCSCHHHHTTS
T ss_pred             EEEEeCCCCccCHHHHHhc
Confidence            9887754432 34444443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.54  E-value=0.0048  Score=53.46  Aligned_cols=75  Identities=11%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH----cCceec----cC---chhh
Q 023866            2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES----IGVKVL----SD---NNAV   68 (276)
Q Consensus         2 ~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~~----~~---~~~~   68 (276)
                      +++...++.++|.|.|+ |.+|+.+++.|++. |+   .+|+++ +|++++.+.+.+    .++...    .+   ..++
T Consensus        13 ~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~---~~V~~~-~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~   88 (344)
T 2gn4_A           13 PNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA---KKIIVY-SRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYA   88 (344)
T ss_dssp             ---CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC---SEEEEE-ESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHH
T ss_pred             ccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC---CEEEEE-ECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHH
Confidence            44444566789999985 99999999999998 74   288998 999887766543    233321    11   2345


Q ss_pred             hcCCCEEEEeeC
Q 023866           69 VEYSDVVVFSVK   80 (276)
Q Consensus        69 ~~~aDvI~lav~   80 (276)
                      ++.+|+||-+.-
T Consensus        89 ~~~~D~Vih~Aa  100 (344)
T 2gn4_A           89 LEGVDICIHAAA  100 (344)
T ss_dssp             TTTCSEEEECCC
T ss_pred             HhcCCEEEECCC
Confidence            678999998763

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.50  E-value=0.0049  Score=52.49  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHH---HHHcCceec-c------CchhhhcCCCEEEEe
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDA---FESIGVKVL-S------DNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~---l~~~g~~~~-~------~~~~~~~~aDvI~la   78 (276)
                      ++|.|.|+ |.+|+.+++.|++.|+    +|++. +|+++ +.+.   +...|+.+. .      +..++++.+|+||.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~   86 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH----PTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISA   86 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC----cEEEE-ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            48999996 9999999999999998    99998 88764 3332   334565432 1      233567789999998


Q ss_pred             eCcc---cHHHHHHHH
Q 023866           79 VKPQ---VDKAAVITE   91 (276)
Q Consensus        79 v~~~---~~~~vl~~~   91 (276)
                      ..+.   ....+++..
T Consensus        87 a~~~~~~~~~~l~~aa  102 (318)
T 2r6j_A           87 LAFPQILDQFKILEAI  102 (318)
T ss_dssp             CCGGGSTTHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHH
Confidence            8643   234444443

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.45  E-value=0.0084  Score=55.53  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+|+++ |.+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGV---G~ItLv-D~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC---CEEEEE-CCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence            5799999999999999999999997   478888 665

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.43  E-value=0.004  Score=52.01  Aligned_cols=54  Identities=13%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..+++.|||.|. +|.+++..|.+.|.    .|+++ +++.              .+..+.+++||+||.+++.
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~gA----tVtv~-~~~t--------------~~L~~~~~~ADIVI~Avg~  203 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRNY----TVSVC-HSKT--------------KDIGSMTRSSKIVVVAVGR  203 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHHSSEEEECSSC
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------ccHHHhhccCCEEEECCCC
Confidence            467999999986 89999999999998    99999 7642              4556778999999999963

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.42  E-value=0.005  Score=51.56  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEcccHH-HHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            7 PAESFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         7 ~~~~~kIgiIG~G~m-G~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ....+++.|||.|.| |..++..|...  |.    .|+++ +|+.              .+..+.+++||+||.++..
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg~  213 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENA----TVTLC-HTGT--------------RDLPALTRQADIVVAAVGV  213 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCC----EEEEE-ECch--------------hHHHHHHhhCCEEEECCCC
Confidence            346789999999986 99999999888  65    89999 7654              3556778999999999963

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.40  E-value=0.004  Score=52.69  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+.+++.|||.|. +|.+++..|.+.|.    .|+++ +|+...++            ..+.+++||+||.+++.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-~~~T~~l~------------l~~~~~~ADIVI~Avg~  220 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA----TVTIV-HSGTSTED------------MIDYLRTADIVIAAMGQ  220 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTSCHHH------------HHHHHHTCSEEEECSCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCCCCch------------hhhhhccCCEEEECCCC
Confidence            4568999999987 79999999999998    99999 87433221            12678999999999974

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.39  E-value=0.0026  Score=53.20  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCceec-c------CchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDvI~lav~   80 (276)
                      |+|.|.|+ |.+|+.+++.|++.  |+    +|++. +|++++.+.+...++... .      +..++++++|+||-+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS----QIIAI-VRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC----eEEEE-EcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            57899987 99999999999998  88    99999 898887776655555321 1      22355678999998764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.39  E-value=0.0029  Score=55.12  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCceec-c----C---chhhhcCCCEEE
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-S----D---NNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~----~---~~~~~~~aDvI~   76 (276)
                      |.+|+|.|.| .|.+|+.++..|++. |+    +|++. +|++++.+.+.. .++... .    +   ..++++++|+||
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi   96 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW----EVFGM-DMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVIL   96 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC----EEEEE-ESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC----EEEEE-eCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence            5678999998 599999999999998 88    99999 898877655544 344321 1    2   223566899999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      -+.
T Consensus        97 h~A   99 (372)
T 3slg_A           97 PLV   99 (372)
T ss_dssp             ECB
T ss_pred             EcC
Confidence            754

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.36  E-value=0.0076  Score=50.63  Aligned_cols=55  Identities=15%  Similarity=0.253  Sum_probs=46.0

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +.+.+++.|||.|. +|.+++..|.+.|.    .|+++ +|+.              .+..+.+++||+||.+++
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg  213 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVG  213 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SSHHHHHTTCSEEEECCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHhcccCCEEEECCC
Confidence            34568999999987 69999999999988    89999 7642              345677899999999996

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.35  E-value=0.0038  Score=52.98  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee------ccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV------LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~------~~~~~~~~~~aDvI~lav   79 (276)
                      +|+|.|.| .|.+|+.++..|++.|+    +|++. +|++.+.+ +.  ++..      ..+..++++++|+||-+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a   70 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN----TPIIL-TRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLA   70 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC----EEEEE-eCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEcc
Confidence            37999998 59999999999999999    99999 88855544 43  3221      223445677999999876

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.33  E-value=0.019  Score=50.09  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..+|.|||+|.+|+.++..|..+|.   .+++++ |++
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv---g~i~lv-D~D  151 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI---GEIILI-DND  151 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-ECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-CCC
Confidence            5789999999999999999999997   478888 775

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=96.33  E-value=0.0076  Score=54.44  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCeEEEEccc----HHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866           10 SFILGFIGAG----KMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG~G----~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~   84 (276)
                      .++|+|||++    .+|..+.++|++.| .    .|+.+ +.+.+..     .|+.++.+..++.+..|++++++|++.+
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~----~v~pV-nP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~~~~   77 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKG----KVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRFV   77 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSS----EEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHHH
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcCCC----EEEEE-CCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCHHHH
Confidence            4789999998    89999999998874 4    78777 6652211     6888888888888889999999999999


Q ss_pred             HHHHHHHhhccc
Q 023866           85 KAAVITEEAFGF   96 (276)
Q Consensus        85 ~~vl~~~~~~~~   96 (276)
                      .+++.+..+.|.
T Consensus        78 ~~~v~e~~~~Gi   89 (457)
T 2csu_A           78 KDTLIQCGEKGV   89 (457)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCC
Confidence            999988754443

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.32  E-value=0.0065  Score=53.06  Aligned_cols=80  Identities=6%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHH-----------HcCceeccCchhhhcCCCE
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE-----------SIGVKVLSDNNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~-----------~~g~~~~~~~~~~~~~aDv   74 (276)
                      +++|||||| .|..|.-|.+.|.+.   +.-++....+++.  ++....-           .....+.....+.+.++|+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~h---P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv   82 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNH---PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI   82 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTC---SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC---CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence            467999999 599999999966543   2235553324433  2232210           0122222212233578999


Q ss_pred             EEEeeCcccHHHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~   91 (276)
                      ||+|+|.....+....+
T Consensus        83 vf~a~p~~~s~~~a~~~   99 (359)
T 4dpk_A           83 IFSPLPQGAAGPVEEQF   99 (359)
T ss_dssp             EEECCCTTTHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHH
Confidence            99999988877777665

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.32  E-value=0.0065  Score=53.06  Aligned_cols=80  Identities=6%  Similarity=0.071  Sum_probs=48.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHH-----------HcCceeccCchhhhcCCCE
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE-----------SIGVKVLSDNNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~-----------~~g~~~~~~~~~~~~~aDv   74 (276)
                      +++|||||| .|..|.-|.+.|.+.   +.-++....+++.  ++....-           .....+.....+.+.++|+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~h---P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv   82 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNH---PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI   82 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTC---SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC---CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence            467999999 599999999966543   2235553324433  2232210           0122222212233578999


Q ss_pred             EEEeeCcccHHHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~   91 (276)
                      ||+|+|.....+....+
T Consensus        83 vf~a~p~~~s~~~a~~~   99 (359)
T 4dpl_A           83 IFSPLPQGAAGPVEEQF   99 (359)
T ss_dssp             EEECCCTTTHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHH
Confidence            99999988877777665

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.31  E-value=0.01  Score=51.35  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEYSDVVVFSVKPQ-VDKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~aDvI~lav~~~-~~~~   86 (276)
                      ...+|.|+|+|.+|...++.+...|.    +|++. ++++++.+.+++.|... ..+..++.+..|+||-++... .+..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGA----EVSVF-ARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHH
Confidence            34689999999999999888888887    89999 99999999988888642 234444444789999999765 5666


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      .+.-+
T Consensus       251 ~~~~l  255 (348)
T 3two_A          251 YLKLL  255 (348)
T ss_dssp             HHTTE
T ss_pred             HHHHH
Confidence            65444

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.29  E-value=0.014  Score=52.63  Aligned_cols=78  Identities=14%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceec-cC-chhhhcCCCE
Q 023866            1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVL-SD-NNAVVEYSDV   74 (276)
Q Consensus         1 ~~~~~~~~--~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~-~~-~~~~~~~aDv   74 (276)
                      |+-+|...  +.++|.|||.|..|..-++.|++.|.    +|+++ +.+. +..+.+.+ .++... .. ..+.+.++|+
T Consensus         1 m~~~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga----~V~vi-~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~l   75 (457)
T 1pjq_A            1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL   75 (457)
T ss_dssp             CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred             CCceeeEEECCCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-cCCCCHHHHHHHhcCCEEEEECCCCccccCCccE
Confidence            56666663  46899999999999999999999998    99999 7643 33444443 345432 11 2234678999


Q ss_pred             EEEeeCccc
Q 023866           75 VVFSVKPQV   83 (276)
Q Consensus        75 I~lav~~~~   83 (276)
                      ||.++....
T Consensus        76 Vi~at~~~~   84 (457)
T 1pjq_A           76 AIAATDDDT   84 (457)
T ss_dssp             EEECCSCHH
T ss_pred             EEEcCCCHH
Confidence            999986654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.25  E-value=0.0091  Score=52.32  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCC-CeEEEE-eCCC--HHHHH----HHHH--c----CceeccCchhhhcCCC
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPP-DRICTA-VHSN--LKRRD----AFES--I----GVKVLSDNNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~-~~V~v~-~~r~--~~~~~----~l~~--~----g~~~~~~~~~~~~~aD   73 (276)
                      +.+||+||| +|.+|.+++..|...+.+.. .+|.+. ++.+  .++++    .|..  .    .+.+..+..+.+++||
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD  110 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  110 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence            357999999 79999999999998877553 236654 1432  23332    2332  1    2344555677889999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||++-
T Consensus       111 vVVita  116 (375)
T 7mdh_A          111 WALLIG  116 (375)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999964

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.25  E-value=0.019  Score=49.90  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=52.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~--   62 (276)
                      ..+|.|||+|.+|+.++.+|..+|.   .+++++ |.+.                   .|++    .+.+  .++.+.  
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gv---g~itlv-D~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGV---KGLTML-DHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            4789999999999999999999997   478887 6431                   2333    3333  233321  


Q ss_pred             -----cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 -----SDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 -----~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                           ....+.+.++|+||.|+.+...+..+.+
T Consensus       112 ~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~  144 (346)
T 1y8q_A          112 TEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQ  144 (346)
T ss_dssp             CSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHH
T ss_pred             ecccCcchHHHhcCCCEEEEcCCCHHHHHHHHH
Confidence                 1235667899999999876554444443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.25  E-value=0.0044  Score=53.54  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=50.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC---c---hhh-hcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---N---NAV-VEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~---~~~-~~~aDvI~lav~~   81 (276)
                      .++|.|+|+|.+|..+++.|.+.|     .|.+. ++++++.+ +.+.+..+. .|   .   .++ ++++|.+++++++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g-----~v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~  187 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLES  187 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSC-----EEEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCC-----cEEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCc
Confidence            458999999999999999998876     36777 99999998 877776532 22   1   122 6789999999986


Q ss_pred             cc
Q 023866           82 QV   83 (276)
Q Consensus        82 ~~   83 (276)
                      +.
T Consensus       188 d~  189 (336)
T 1lnq_A          188 DS  189 (336)
T ss_dssp             HH
T ss_pred             cH
Confidence            53

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.20  E-value=0.0098  Score=49.93  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +.+.+++.|||.|. +|.+++..|.+.|.    .|+++ +++.              .+..+.+++||+||.+++
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg  212 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAG  212 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhhcCCEEEECCC
Confidence            34678999999987 69999999999998    89999 7652              345677899999999996

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.18  E-value=0.0084  Score=50.72  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...+++.|||.|+ +|..++..|...|.    .|+++ +++              +.+..+.+++||+||.++..
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~--------------t~~L~~~~~~ADIVI~Avg~  218 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSK--------------TAHLDEEVNKGDILVVATGQ  218 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTT--------------CSSHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC----eEEEE-ECC--------------cccHHHHhccCCEEEECCCC
Confidence            4568999999996 69999999999987    99999 755              23556778999999999964

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.16  E-value=0.0099  Score=44.25  Aligned_cols=79  Identities=11%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceecc--Cchhhhc--CCCEEEEeeCcc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVE--YSDVVVFSVKPQ   82 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~--~aDvI~lav~~~   82 (276)
                      .+.+++.|||+|..|..++..+.+. |+    ++..++|.++++... .-.|+.+..  +..+.++  ..|.||+|+|..
T Consensus         2 ~~~~~vlIiGaG~~g~~l~~~l~~~~g~----~vvg~~d~~~~~~g~-~i~g~pV~g~~~l~~~~~~~~id~viia~~~~   76 (141)
T 3nkl_A            2 NAKKKVLIYGAGSAGLQLANMLRQGKEF----HPIAFIDDDRKKHKT-TMQGITIYRPKYLERLIKKHCISTVLLAVPSA   76 (141)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHSSSE----EEEEEECSCGGGTTC-EETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCc----EEEEEEECCcccCCC-EecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3567899999999999999998765 66    877665877653210 013555543  2333333  578999999754


Q ss_pred             c---HHHHHHHH
Q 023866           83 V---DKAAVITE   91 (276)
Q Consensus        83 ~---~~~vl~~~   91 (276)
                      .   ..+++..+
T Consensus        77 ~~~~~~~i~~~l   88 (141)
T 3nkl_A           77 SQVQKKVIIESL   88 (141)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            3   35555555

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.16  E-value=0.0048  Score=54.10  Aligned_cols=67  Identities=18%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c------CchhhhcCCCEEEEee
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDvI~lav   79 (276)
                      .++|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.......++... .      +..++++.+|+||-+.
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A  101 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA  101 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCC----eEEEE-ECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence            35689999988 9999999999999998    99999 887654332222233321 1      1235567899999875

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.08  E-value=0.0082  Score=50.46  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ....+++.|||.|. .|..++..|...|.    .|+++ +++.              .+..+.+++||+||.+++.
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~  212 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFT--------------KNLRHHVENADLLIVAVGK  212 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSC--------------SCHHHHHHHCSEEEECSCC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhccCCEEEECCCC
Confidence            34568999999997 59999999999887    99999 7653              3456778899999999973

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.06  E-value=0.015  Score=50.14  Aligned_cols=68  Identities=10%  Similarity=0.047  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----HHHHHHHH-------cCceec-c------Cchhh
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFES-------IGVKVL-S------DNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~l~~-------~g~~~~-~------~~~~~   68 (276)
                      +.+|+|.|.|+ |.+|+.++..|++.|+    +|++. +|++    +..+.+..       .++... .      +..++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   97 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ----VVIGL-DNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV   97 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH
Confidence            35689999985 9999999999999999    99998 7743    33444433       233321 1      12355


Q ss_pred             hcCCCEEEEeeC
Q 023866           69 VEYSDVVVFSVK   80 (276)
Q Consensus        69 ~~~aDvI~lav~   80 (276)
                      ++++|+||-+.-
T Consensus        98 ~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 MKGVDHVLHQAA  109 (351)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCCCEEEECCc
Confidence            678999998863

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.05  E-value=0.0071  Score=53.20  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=48.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEE-EEeCC-CH-HHHHHHH-----------HcCceecc-CchhhhcC
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAVHS-NL-KRRDAFE-----------SIGVKVLS-DNNAVVEY   71 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~-v~~~r-~~-~~~~~l~-----------~~g~~~~~-~~~~~~~~   71 (276)
                      |.++|||||| .|..|.-|.+.|.+.-   .-+|. ++.++ +. ++.....           .....+.. +..+...+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp---~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~   93 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHP---EFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLE   93 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCS---SEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGG
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCC---CceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhccc
Confidence            5678999999 5999999999765532   23564 32122 22 1222111           01222211 22214578


Q ss_pred             CCEEEEeeCcccHHHHHHHHh
Q 023866           72 SDVVVFSVKPQVDKAAVITEE   92 (276)
Q Consensus        72 aDvI~lav~~~~~~~vl~~~~   92 (276)
                      +|+||+|+|.....++...+.
T Consensus        94 ~Dvvf~alp~~~s~~~~~~~~  114 (381)
T 3hsk_A           94 CDVVFSGLDADVAGDIEKSFV  114 (381)
T ss_dssp             CSEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHH
Confidence            999999999888777777663

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.04  E-value=0.0081  Score=51.49  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH------HHHHH-cCceec-------cCchhhhcCCCE
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR------DAFES-IGVKVL-------SDNNAVVEYSDV   74 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~------~~l~~-~g~~~~-------~~~~~~~~~aDv   74 (276)
                      .++|.|.| +|-+|+.++..|++.|+    +|++. .|++++.      ..+.. .++...       .+..++++.+|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY----AVNTT-VRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC----EEEEE-ESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-EcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCE
Confidence            57899998 69999999999999999    99987 6765432      12221 233221       223456778999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||-+.
T Consensus        84 Vih~A   88 (338)
T 2rh8_A           84 VFHVA   88 (338)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99754

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.03  E-value=0.0059  Score=50.92  Aligned_cols=64  Identities=14%  Similarity=0.304  Sum_probs=48.4

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCceec-c------CchhhhcCCCEEEEeeC
Q 023866           12 ILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~------~~~~~~~~aDvI~lav~   80 (276)
                      ||.|.|+ |.+|+.+++.|++.  |+    +|++. +|++++.+.+...++... .      +..++++++|+||-+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS----QIVAI-VRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc----eEEEE-EcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5788987 99999999999998  88    99999 898887766655554321 1      22355678999998763

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.02  E-value=0.022  Score=50.95  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=52.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHH----HHH--cCcee---
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV---   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~---   61 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+|+++ |.+.                   .|++.    +++  .++.+   
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGv---g~i~iv-D~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~  115 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  115 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTC---CCEEEE-ECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-cCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEE
Confidence            5789999999999999999999997   478887 5431                   13332    333  22321   


Q ss_pred             ----ccCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           62 ----LSDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        62 ----~~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                          ...+.+.++++|+||.|+.....+..+..
T Consensus       116 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~  148 (434)
T 1tt5_B          116 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWING  148 (434)
T ss_dssp             ESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred             ecccchhhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence                12234678899999999876555544443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.02  E-value=0.014  Score=50.72  Aligned_cols=67  Identities=15%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH-cCcee-ccC-------chhhhcCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKV-LSD-------NNAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~-~g~~~-~~~-------~~~~~~~aDvI~   76 (276)
                      ..|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.  +.+.. .++.. ..|       ..++++.+|+||
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi   78 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF   78 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEE
Confidence            4578999985 9999999999999998    99998 8887654  44443 24432 122       234577899999


Q ss_pred             EeeC
Q 023866           77 FSVK   80 (276)
Q Consensus        77 lav~   80 (276)
                      .+..
T Consensus        79 ~~a~   82 (352)
T 1xgk_A           79 INTT   82 (352)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            7764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.99  E-value=0.0047  Score=52.12  Aligned_cols=58  Identities=9%  Similarity=0.009  Sum_probs=41.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |||.|.|+ |-+|+.+++.|++.||    +|++. .|++.+.      .+.......+.++++|.||=+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~----~V~~l-~R~~~~~------~~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH----EVTLV-SRKPGPG------RITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCTT------EEEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCcC------eeecchhhHhhccCCCEEEEec
Confidence            79999987 9999999999999999    99999 8876431      1111111123456788887543

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=95.96  E-value=0.036  Score=44.89  Aligned_cols=80  Identities=19%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      .||.+++|+ |+||+.+.+.....++    ++...+++..+             .   + +.++|++|=-+.|+.+.+.+
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~----elv~~id~~~~-------------~---~-l~~~DVvIDFT~P~a~~~~~   70 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVNGV-------------E---E-LDSPDVVIDFSSPEALPKTV   70 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETTEE-------------E---E-CSCCSEEEECSCGGGHHHHH
T ss_pred             cceeEEEEecCHHHHHHHHHHhCCCC----EEEEEEcCCCc-------------c---c-ccCCCEEEECCCHHHHHHHH
Confidence            589999998 9999999886656677    76644476531             1   1 24789999666777766665


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRW  115 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l  115 (276)
                      +...+.|    .+.+....|. +.+++
T Consensus        71 ~~~~~~g----~~~ViGTTG~-~~~~~   92 (228)
T 1vm6_A           71 DLCKKYR----AGLVLGTTAL-KEEHL   92 (228)
T ss_dssp             HHHHHHT----CEEEECCCSC-CHHHH
T ss_pred             HHHHHcC----CCEEEeCCCC-CHHHH
Confidence            5443223    5666666788 66554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.95  E-value=0.0092  Score=50.04  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +.++|.|||+|..|..-+..|++.|.    +|+++ +.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga----~VtVi-ap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC----EEEEE-cCCC
Confidence            56899999999999999999999998    99998 6653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.93  E-value=0.021  Score=49.78  Aligned_cols=77  Identities=12%  Similarity=-0.049  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c-C---chhhh------cCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-D---NNAVV------EYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~---~~~~~------~~aDvI~la   78 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|++. ++++++.+.+++.|+... + +   ..+.+      ...|+||-+
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~  264 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGA----EVIVT-SSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEI  264 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-ecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence            4689999999999999988888888    99999 999999998888876421 1 1   11111      157888888


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      +.+..+...+.-+
T Consensus       265 ~g~~~~~~~~~~l  277 (363)
T 3uog_A          265 AGGAGLGQSLKAV  277 (363)
T ss_dssp             TTSSCHHHHHHHE
T ss_pred             CChHHHHHHHHHh
Confidence            7766666665544

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=95.90  E-value=0.0043  Score=54.32  Aligned_cols=81  Identities=15%  Similarity=0.264  Sum_probs=48.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      ++||+||| .|..|.-|.+.|.+.+| +..++.....++. .+.-.+......+..-..+...++|+||+|+|.....+.
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~   80 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY   80 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCC-CEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCC-CcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHH
Confidence            47999999 69999999998887655 3334554413221 110001111122221112345789999999998777777


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ...+
T Consensus        81 a~~~   84 (366)
T 3pwk_A           81 APYA   84 (366)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.86  E-value=0.0076  Score=52.85  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .|||.|||+|.-|.++|..|.++|+    +|+|+ +|++
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~----~v~v~-Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI----KVTIY-ERNS   34 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC----CEEEE-ecCC
Confidence            4899999999999999999999999    99999 8754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.86  E-value=0.031  Score=51.74  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-Cceec-cCc--hh-----hhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVL-SDN--NA-----VVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~-~~~--~~-----~~~~aDvI~lav~   80 (276)
                      .++|-|+|+|.+|..+++.|.+.|+    ++.++ +.++++.+.+.+. |+.+. .|.  .+     -+++||.+|+ +.
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~~~----~vvvi-d~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~  200 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESRNH----LFVVV-TDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL  200 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTTTC----CEEEE-ESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC
Confidence            5689999999999999999999998    99999 9999999998886 76532 222  11     1568999987 44


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      ++
T Consensus       201 ~D  202 (565)
T 4gx0_A          201 SD  202 (565)
T ss_dssp             CH
T ss_pred             Cc
Confidence            43

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=95.85  E-value=0.015  Score=53.53  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ..+++-|+|+|.+|.+++..|.+.|.    +|+++ +|++++++.+.+
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~----~V~i~-~R~~~~a~~la~  405 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA----KVVIA-NRTYERALELAE  405 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC-----CEEE-ESSHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45689999999999999999999998    89999 999999888765

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.82  E-value=0.035  Score=47.84  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHc--------C--------ce-------ec--c
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESI--------G--------VK-------VL--S   63 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~--------g--------~~-------~~--~   63 (276)
                      +.||||+|.|.+|.-+.+.|.+...   -+|....++ +++....+.+.        +        +.       +.  .
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~~---veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~   77 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER   77 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCC---eEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcC
Confidence            3699999999999999998876532   255544365 34544433331        1        11       12  1


Q ss_pred             Cchhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           64 DNNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        64 ~~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      ++.++-   .++|+||.|++...-.+.....
T Consensus        78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~  108 (330)
T 1gad_O           78 DPANLKWDEVGVDVVAEATGLFLTDETARKH  108 (330)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHH
T ss_pred             ChhhCccccccCCEEEECCCccccHHHHHHH
Confidence            233321   4799999999887666655544

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.82  E-value=0.0032  Score=54.01  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             CCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCcee-cc---C---chhhhc--
Q 023866            3 AFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV-LS---D---NNAVVE--   70 (276)
Q Consensus         3 ~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~-~~---~---~~~~~~--   70 (276)
                      ..|.+++.|+|.|.|+ |.+|+.++..|++.|+    +|++. +|+++....+.+  .++.. ..   +   ..++++  
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH----EILVI-DNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC----EEEEE-ECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence            3455667789999987 9999999999999999    99998 886443211111  12221 11   1   234556  


Q ss_pred             CCCEEEEee
Q 023866           71 YSDVVVFSV   79 (276)
Q Consensus        71 ~aDvI~lav   79 (276)
                      .+|+||-+.
T Consensus        88 ~~D~vih~A   96 (330)
T 2pzm_A           88 KPTHVVHSA   96 (330)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            899999876

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.82  E-value=0.035  Score=48.00  Aligned_cols=80  Identities=10%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ccC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD   64 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~   64 (276)
                      +||||+|+|.+|+.+.+.|.+.+. +.-+|..++++ +++....+.+    .                 |  +.+  ..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~-~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSC-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCC-CCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            699999999999999999887520 01155544355 5555444432    1                 1  111  123


Q ss_pred             chhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           65 NNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        65 ~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      +.++.   .++|+||.|++.....+.....
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~  111 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH  111 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHH
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHH
Confidence            33432   2689999999877655555444

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=95.81  E-value=0.026  Score=49.60  Aligned_cols=75  Identities=21%  Similarity=0.264  Sum_probs=54.5

Q ss_pred             CeEEEEcccHHHHHHHHH-HHhCCCCCCCeEEEEeCCCHHHHHHHHHcC------------------ceec-cCch---h
Q 023866           11 FILGFIGAGKMAESIAKG-VAKSGVLPPDRICTAVHSNLKRRDAFESIG------------------VKVL-SDNN---A   67 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~-l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g------------------~~~~-~~~~---~   67 (276)
                      ||+-.+|+|++|+++... |.++|+    +|++. |+++...+.+.+.|                  ++.. ...+   +
T Consensus         1 mkavhfGaGniGRGfig~~l~~~g~----~v~f~-dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~   75 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADAGI----QLTFA-DVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVD   75 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHH
T ss_pred             CcEEEECCCccchhhHHHHHHHcCC----eEEEE-eCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHH
Confidence            789999999999666554 567898    99999 99999888888632                  1111 1112   3


Q ss_pred             hhcCCCEEEEeeCcccHHHHHHH
Q 023866           68 VVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        68 ~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                      .+.++|+|.+++.|+.+..+...
T Consensus        76 ~i~~adlitT~vG~~~l~~i~~~   98 (382)
T 3h2z_A           76 LIAQVDLVTTAVGPVVLERIAPA   98 (382)
T ss_dssp             HHTTCSEEEECCCHHHHHHTHHH
T ss_pred             HHcCCCEEEECCCcccHHHHHHH
Confidence            56789999999988776655443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.77  E-value=0.023  Score=46.41  Aligned_cols=47  Identities=13%  Similarity=0.131  Sum_probs=37.8

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |..++.+++-|.|+ |.+|.++++.|.+.|+    +|.+. +|++++.+.+.+
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~   56 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGA----SVVLL-GRTEASLAEVSD   56 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-ecCHHHHHHHHH
Confidence            34445666777766 8999999999999999    99999 999988766543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.76  E-value=0.039  Score=47.72  Aligned_cols=77  Identities=9%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHh---C-CCCCCCeEEEEeCC-CHHHHHHHHH----c-----------------C--ceec
Q 023866           11 FILGFIGAGKMAESIAKGVAK---S-GVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKVL   62 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~---~-g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~~   62 (276)
                      +||||+|.|.+|..+.+.|.+   . .+    +|....++ +++....+-+    .                 |  +.+.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~----eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~   78 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEI----TVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVL   78 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTE----EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCE----EEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEE
Confidence            699999999999999999887   4 34    66544354 4554444432    1                 1  1121


Q ss_pred             --cCchhhh-c--CCCEEEEeeCcccHHHHHHHH
Q 023866           63 --SDNNAVV-E--YSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 --~~~~~~~-~--~aDvI~lav~~~~~~~vl~~~   91 (276)
                        .++.++. .  ++|+||.|++.....+.....
T Consensus        79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~  112 (339)
T 2x5j_O           79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAH  112 (339)
T ss_dssp             CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHH
T ss_pred             ecCChHHCcccccCCCEEEECCCccccHHHHHHH
Confidence              2333321 1  799999999877665555544

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.72  E-value=0.0071  Score=54.33  Aligned_cols=65  Identities=20%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH--HHHHHHcCceec--cCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVL--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~--~~~~~~~~~aDvI~lav   79 (276)
                      ..+||.|||.|..|.+.++.|.+.|+    +|+++ |.+...  ...+. .|+.+.  ....+.++.+|+||++.
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~   72 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP   72 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTC----CCEEE-ESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCC----EEEEE-ECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence            45789999999999999999999999    99999 765422  13444 677653  22345566899999974

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.71  E-value=0.034  Score=48.00  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH----cC-------------------ceec-c-
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL-S-   63 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~g-------------------~~~~-~-   63 (276)
                      |+||||+|.|.+|.-+.+.|.+...   -+|....++ +++....+.+    .|                   +.+. . 
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~---veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   77 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPD---IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAER   77 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTT---EEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCC---eEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecC
Confidence            4699999999999999998876521   155544365 4444444432    11                   1122 1 


Q ss_pred             Cchhhh-c--CCCEEEEeeCcccHHHHHHHH
Q 023866           64 DNNAVV-E--YSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        64 ~~~~~~-~--~aDvI~lav~~~~~~~vl~~~   91 (276)
                      ++.++- .  ++|+||.|++...-.+.....
T Consensus        78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~  108 (334)
T 3cmc_O           78 DPENLAWGEIGVDIVVESTGRFTKREDAAKH  108 (334)
T ss_dssp             SGGGCCTGGGTCCEEEECSSSCCBHHHHTHH
T ss_pred             ChhhcCcccCccCEEEECCCchhhHHHHHHH
Confidence            333321 2  789999999987666665544

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.69  E-value=0.021  Score=47.90  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +.+.+++.|||.|. +|.+++..|.+.|.    .|+++ +++.              .+..+.+++||+||.+++
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA----tVtv~-hs~T--------------~~L~~~~~~ADIVI~Avg  213 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC----TVTVT-HRFT--------------RDLADHVSRADLVVVAAG  213 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHTCSEEEECCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCC--------------cCHHHHhccCCEEEECCC
Confidence            34568999999876 89999999999988    99999 7642              245577899999999996

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.64  E-value=0.024  Score=48.86  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----HHHHHHHH-------cCcee-ccC------chhh
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFES-------IGVKV-LSD------NNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~~~~~l~~-------~g~~~-~~~------~~~~   68 (276)
                      +.+|+|.|.|+ |.+|+.++..|++.|+    +|++. +|++    ++.+.+.+       .++.. ..|      ..++
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   99 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA   99 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHH
Confidence            45789999988 9999999999999998    99998 8864    23443321       23332 111      2345


Q ss_pred             hcCCCEEEEeeC
Q 023866           69 VEYSDVVVFSVK   80 (276)
Q Consensus        69 ~~~aDvI~lav~   80 (276)
                      ++.+|+||-+.-
T Consensus       100 ~~~~d~vih~A~  111 (352)
T 1sb8_A          100 CAGVDYVLHQAA  111 (352)
T ss_dssp             HTTCSEEEECCS
T ss_pred             hcCCCEEEECCc
Confidence            678999999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.60  E-value=0.034  Score=47.94  Aligned_cols=77  Identities=9%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c----Cchhhh----cCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV----EYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~----~~aDvI~lav~   80 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++++.+.+++.|+... +    +..+.+    ...|+||-++.
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g  239 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV  239 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence            4689999999999999998888887    99999 999999998888776421 1    111111    35788888876


Q ss_pred             c-ccHHHHHHHH
Q 023866           81 P-QVDKAAVITE   91 (276)
Q Consensus        81 ~-~~~~~vl~~~   91 (276)
                      . ..+...+.-+
T Consensus       240 ~~~~~~~~~~~l  251 (339)
T 1rjw_A          240 SKPAFQSAYNSI  251 (339)
T ss_dssp             CHHHHHHHHHHE
T ss_pred             CHHHHHHHHHHh
Confidence            4 4444444433

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.59  E-value=0.0089  Score=54.78  Aligned_cols=62  Identities=11%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      +|||.|.| +|.+|+.++..|++.|+    +|++. +|++.+.+.   ......+...+++.++|+||-+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~----~V~~l-~R~~~~~~~---v~~d~~~~~~~~l~~~D~Vih~A  209 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH----EVIQL-VRKEPKPGK---RFWDPLNPASDLLDGADVLVHLA  209 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCTTC---EECCTTSCCTTTTTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCCccc---eeecccchhHHhcCCCCEEEECC
Confidence            68999998 59999999999999999    99999 888765321   11112233456678899999865

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.57  E-value=0.0056  Score=56.76  Aligned_cols=65  Identities=14%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC--ch-----hhhcCCCEEEEeeCccc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD--NN-----AVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~--~~-----~~~~~aDvI~lav~~~~   83 (276)
                      ++|.|+|+|.+|..+++.|.+.|+    +|.+. |+++++.+.+.   ..+..|  ..     .-++++|.++.+++.+.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~---~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~  420 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPV----PFILI-DRQESPVCNDH---VVVYGDATVGQTLRQAGIDRASGIIVTTNDDS  420 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSCCSSCCSS---CEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECChHHHhhcC---CEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence            789999999999999999999999    99999 99998876543   111111  11     12578999999998753

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=95.55  E-value=0.056  Score=45.98  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=51.3

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHH----HcC--ceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE----SIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|||-|  ++..+++..+.+-|.    +|+++ .+.     ++-.+.++    +.|  +.++.++.++++++|+|
T Consensus       147 ~gl~va~vGD~~~rva~Sl~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvv  221 (307)
T 2i6u_A          147 RGLRLSYFGDGANNMAHSLLLGGVTAGI----HVTVA-APEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL  221 (307)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEE-CCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE
T ss_pred             CCeEEEEECCCCcCcHHHHHHHHHHCCC----EEEEE-CCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEE
Confidence            46899999996  999999999999998    99987 432     22223332    456  56688899999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus       222 y~~~  225 (307)
T 2i6u_A          222 VTDT  225 (307)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9965

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.54  E-value=0.033  Score=43.81  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=38.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      ..++|.|+| +|.+|.++++.+...|.    +|+++ +|++++.+.+++.|.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~   84 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGV   84 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHcCC
Confidence            356899999 69999999999988898    99999 999988877766554

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.53  E-value=0.055  Score=46.37  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=51.3

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHH----HcC--ceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFE----SIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|+|-|  ++..+++..+.+-|.    +|+++ .+     .++-.+.++    +.|  +.++.++.++++++|+|
T Consensus       166 ~gl~va~vGD~~~rva~Sl~~~~~~~G~----~v~~~-~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvv  240 (325)
T 1vlv_A          166 KGVKVVFMGDTRNNVATSLMIACAKMGM----NFVAC-GPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV  240 (325)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEE-SCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEE
T ss_pred             CCcEEEEECCCCcCcHHHHHHHHHHCCC----EEEEE-CCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEE
Confidence            56899999996  999999999999998    99988 44     222223333    456  55678899999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus       241 yt~~  244 (325)
T 1vlv_A          241 YTDV  244 (325)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9865

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.53  E-value=0.012  Score=50.59  Aligned_cols=60  Identities=10%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----c--cCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----L--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~aDvI~lav   79 (276)
                      +.|+|.|.|+ |.+|+.++..|++.|+    +|++. +|++++      .++..     .  .+..++++++|+||-+.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A   85 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR----TVRGF-DLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG   85 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC----CEEEE-ESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC----EEEEE-eCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence            4688999987 9999999999999999    99999 887654      22221     1  12335577899999875

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.50  E-value=0.073  Score=45.30  Aligned_cols=66  Identities=18%  Similarity=0.321  Sum_probs=51.8

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhC-CCCCCCeEEEEeCC-----CHHHHHHHHHcCc--eeccCchhhhcCCCEEEE
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKS-GVLPPDRICTAVHS-----NLKRRDAFESIGV--KVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~-g~~~~~~V~v~~~r-----~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~l   77 (276)
                      +..||+|+|-   +++..+++..+.+- |.    +|++. .+     .++-.+.+++.|.  .++.++.++++++|+|..
T Consensus       153 ~gl~va~vGD~~~~rva~Sl~~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt  227 (310)
T 3csu_A          153 DNLHVAMVGDLKYGRTVHSLTQALAKFDGN----RFYFI-APDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYM  227 (310)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHHTSSSC----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEE
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHhCCCC----EEEEE-CCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEE
Confidence            5689999998   59999999999999 98    99987 43     2333445555564  467889999999999998


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      -+
T Consensus       228 ~~  229 (310)
T 3csu_A          228 TR  229 (310)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.45  E-value=0.051  Score=47.60  Aligned_cols=80  Identities=10%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ccC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD   64 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~   64 (276)
                      +||||+|+|.+|+.+++.|.+.+. +.-+|..++++ +++....+.+    .                 |  +.+  ..+
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~-~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCC-CCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            699999999999999999887520 01156544355 4555444432    1                 1  111  123


Q ss_pred             chhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866           65 NNAVV---EYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        65 ~~~~~---~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      +.++.   .++|+||.|++.....+.....
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~h  111 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH  111 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHHH
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHHH
Confidence            33432   2789999999877655555443

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.45  E-value=0.065  Score=49.22  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---H----------------HHH----HHHHc--Ccee--c
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---K----------------RRD----AFESI--GVKV--L   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~----------------~~~----~l~~~--g~~~--~   62 (276)
                      ..+|.|||+|.+|+.++.+|..+|.   .+++++ |.+.   +                |++    .+++.  .+.+  .
T Consensus        32 ~~~VlvvG~GGlGseiak~La~aGV---g~itlv-D~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~  107 (531)
T 1tt5_A           32 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV  107 (531)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEe
Confidence            4689999999999999999999997   588888 7653   1                222    22221  2321  1


Q ss_pred             c--------CchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           63 S--------DNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        63 ~--------~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      .        +..+.+.++|+||.|+.....+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln  142 (531)
T 1tt5_A          108 EESPENLLDNDPSFFCRFTVVVATQLPESTSLRLA  142 (531)
T ss_dssp             SSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHH
T ss_pred             CCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHH
Confidence            1        23356788999999986555444443

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.44  E-value=0.014  Score=51.07  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHH-HHHHHHcCceecc--CchhhhcCCCEEEEeeCcccH
Q 023866           10 SFILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-RDAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVD   84 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~--~~~~~~~~aDvI~lav~~~~~   84 (276)
                      |+||||+| .|.+|.-+.+.++. ..+ +.-+++....++.-+ ...+....+.+..  +..+ .+++|+||+|++....
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~-~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s   78 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDF-DAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYT   78 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCC-CeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhH
Confidence            47999999 89999999995444 332 222555441332111 1011112233221  2233 5789999999998777


Q ss_pred             HHHHHHHh
Q 023866           85 KAAVITEE   92 (276)
Q Consensus        85 ~~vl~~~~   92 (276)
                      .+....+.
T Consensus        79 ~~~a~~~~   86 (367)
T 1t4b_A           79 NEIYPKLR   86 (367)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776664

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.44  E-value=0.033  Score=48.09  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=56.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc---hh---hhc---CCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN---NA---VVE---YSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~---~~---~~~---~aDvI~l   77 (276)
                      ...+|.|+|+|.+|...++.+...  |.    +|++. ++++++.+.+++.|....-+.   .+   .+.   ..|+||-
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid  244 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNI----TIVGI-SRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAID  244 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTC----EEEEE-CSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCC----EEEEE-eCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEE
Confidence            456899999999999888877777  87    89999 999999998888886422111   11   111   5789998


Q ss_pred             eeCcc-cHHHHHHHH
Q 023866           78 SVKPQ-VDKAAVITE   91 (276)
Q Consensus        78 av~~~-~~~~vl~~~   91 (276)
                      ++... .+...+.-+
T Consensus       245 ~~g~~~~~~~~~~~l  259 (344)
T 2h6e_A          245 LVGTEETTYNLGKLL  259 (344)
T ss_dssp             SSCCHHHHHHHHHHE
T ss_pred             CCCChHHHHHHHHHh
Confidence            88655 455555444

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.41  E-value=0.018  Score=48.59  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +..||+|+|-   +++..+++..+.+-|.    +|+++ .+..=..+.+.+.|+.++.++.++++++|+|.. +..+
T Consensus       145 ~gl~va~vGDl~~~rva~Sl~~~~~~~g~----~v~~~-~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q  215 (291)
T 3d6n_B          145 KDLRVLYVGDIKHSRVFRSGAPLLNMFGA----KIGVC-GPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQ  215 (291)
T ss_dssp             TTCEEEEESCCTTCHHHHHHHHHHHHTTC----EEEEE-SCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCC----EEEEE-CCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence            5689999997   8999999999999998    99988 542211111334688888899999999999999 7654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.41  E-value=0.022  Score=48.15  Aligned_cols=63  Identities=14%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav   79 (276)
                      |+|.|.|+ |.+|+.+++.|++.|+    +|++. +|+++... .....+.-..+..++++  .+|+||-+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A   68 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW----HAVGC-GFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCA   68 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-C-------------------CHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC----eEEEE-ccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence            68999987 9999999999999998    99999 88765411 11111111123344455  389999875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.38  E-value=0.012  Score=47.72  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-----ec--cCchhhhcCCCEEEEee
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-----VL--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~aDvI~lav   79 (276)
                      |+.++|.|.| .|.+|..+++.|++.|+.  .+|++. +|++++.+.+...++.     +.  .+..++++.+|+||-+.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~--~~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a   92 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLF--SKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL   92 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCC--SEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCC--CEEEEE-EcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECC
Confidence            3457899998 599999999999999851  278888 8887654332222222     11  23345667899999987


Q ss_pred             Cc
Q 023866           80 KP   81 (276)
Q Consensus        80 ~~   81 (276)
                      -.
T Consensus        93 g~   94 (242)
T 2bka_A           93 GT   94 (242)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.38  E-value=0.086  Score=45.56  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=54.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---c---Cch-hh---h-----cCCCE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---S---DNN-AV---V-----EYSDV   74 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~---~~~-~~---~-----~~aDv   74 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|++. ++++++.+.+++.|+...   .   +.. ++   .     ...|+
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence            4689999999999999888877887    88888 999999998888886421   1   111 11   1     24788


Q ss_pred             EEEeeCcc-cHHHHHHHH
Q 023866           75 VVFSVKPQ-VDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~-~~~~vl~~~   91 (276)
                      ||-++... .+...+.-+
T Consensus       244 vid~~g~~~~~~~~~~~l  261 (352)
T 1e3j_A          244 TIDCSGNEKCITIGINIT  261 (352)
T ss_dssp             EEECSCCHHHHHHHHHHS
T ss_pred             EEECCCCHHHHHHHHHHH
Confidence            88888654 345554443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.36  E-value=0.056  Score=48.80  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCcee-ccC--c-----hhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV-LSD--N-----NAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~-~~~--~-----~~~~~~aDvI~lav   79 (276)
                      .++|-|+|.|++|..+|+.|- .++    +|.+. ++++++++.+.+  .+..+ ..|  .     ++-++++|+++.++
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~-~~~----~v~iI-E~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T  308 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLE-QTY----SVKLI-ERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT  308 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHT-TTS----EEEEE-ESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred             ccEEEEEcchHHHHHHHHHhh-hcC----ceEEE-ecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence            578999999999999999874 456    99999 999999999887  23332 222  1     12367899999999


Q ss_pred             Cccc
Q 023866           80 KPQV   83 (276)
Q Consensus        80 ~~~~   83 (276)
                      ..+.
T Consensus       309 ~~De  312 (461)
T 4g65_A          309 NEDE  312 (461)
T ss_dssp             SCHH
T ss_pred             cCcH
Confidence            7765

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.35  E-value=0.026  Score=46.52  Aligned_cols=44  Identities=9%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.++|-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~   54 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAK   54 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCcHhHHHHHH
Confidence            45567888865 9999999999999999    99999 998877665543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.30  E-value=0.021  Score=49.46  Aligned_cols=44  Identities=11%  Similarity=0.087  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCeEEEEeCCCHH
Q 023866            1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~--~g~~~~~~V~v~~~r~~~   49 (276)
                      |...+..+++|+|.|.|+ |.+|+.++..|++  .|+    +|++. +|++.
T Consensus         1 M~~~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~----~V~~~-~r~~~   47 (362)
T 3sxp_A            1 MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKA----KVVVL-DKFRS   47 (362)
T ss_dssp             CCSSSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS----EEEEE-ECCCC
T ss_pred             CcccchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC----eEEEE-ECCCc
Confidence            555555567789999965 9999999999999  899    99999 88654

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.27  E-value=0.087  Score=44.76  Aligned_cols=66  Identities=12%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhC-CCCCCCeEEEEeCC-----CHHHHHHHHHcCce--eccCchhhhcCCCEEEE
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKS-GVLPPDRICTAVHS-----NLKRRDAFESIGVK--VLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~-g~~~~~~V~v~~~r-----~~~~~~~l~~~g~~--~~~~~~~~~~~aDvI~l   77 (276)
                      +..||+|||=   |++..+++..+.+- |.    +|+++ .+     .++-.+.+++.|..  .+.++.++++++|+|..
T Consensus       150 ~glkva~vGD~~~~rva~Sl~~~~~~~~G~----~v~~~-~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~  224 (306)
T 4ekn_B          150 DGIKIAFVGDLKYGRTVHSLVYALSLFENV----EMYFV-SPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYV  224 (306)
T ss_dssp             TTCEEEEESCTTTCHHHHHHHHHHHTSSSC----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEE
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHhcCCC----EEEEE-CCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEe
Confidence            5689999998   58999999999998 98    99887 43     23334455556654  47889999999999997


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      -.
T Consensus       225 ~~  226 (306)
T 4ekn_B          225 TR  226 (306)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.24  E-value=0.027  Score=47.68  Aligned_cols=74  Identities=14%  Similarity=0.083  Sum_probs=54.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c-Cc-h---hhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DN-N---AVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~~-~---~~~~~aDvI~lav~~~   82 (276)
                      ..+|.|+|+ |.+|...++.+...|.    +|++. ++++++.+.+++.|+... + +. .   +.+...|+||- +...
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~~  199 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGL----RVLAA-ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRGK  199 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCHH
Confidence            468999998 9999999998888887    99999 999999888888776422 1 11 1   22356899998 7665


Q ss_pred             cHHHHHH
Q 023866           83 VDKAAVI   89 (276)
Q Consensus        83 ~~~~vl~   89 (276)
                      .+...+.
T Consensus       200 ~~~~~~~  206 (302)
T 1iz0_A          200 EVEESLG  206 (302)
T ss_dssp             THHHHHT
T ss_pred             HHHHHHH
Confidence            4544443

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.22  E-value=0.035  Score=48.39  Aligned_cols=77  Identities=13%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceec---cCc---hhhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVL---SDN---NAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~---~~~---~~~~~~aDvI~lav~~~   82 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++++.+.+. +.|....   .+.   .++....|+||-++...
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~  262 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAFGS----KVTVI-STSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAV  262 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcH
Confidence            4689999999999999998888887    89998 99999988877 5776421   111   12234679999888643


Q ss_pred             -cHHHHHHHH
Q 023866           83 -VDKAAVITE   91 (276)
Q Consensus        83 -~~~~vl~~~   91 (276)
                       .+...+.-+
T Consensus       263 ~~~~~~~~~l  272 (366)
T 1yqd_A          263 HPLLPLFGLL  272 (366)
T ss_dssp             CCSHHHHHHE
T ss_pred             HHHHHHHHHH
Confidence             466665544

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.21  E-value=0.087  Score=44.96  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHH----HcC--ceeccCchhhhcCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFE----SIG--VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI~   76 (276)
                      +..||+|||- +++..+++..+.+-|.    +|+++ .+     .++-.+.++    +.|  +.++.++.++++++|+|.
T Consensus       154 ~gl~va~vGD~~rva~Sl~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy  228 (315)
T 1pvv_A          154 KGVKVVYVGDGNNVAHSLMIAGTKLGA----DVVVA-TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY  228 (315)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHCCC----EEEEE-CCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEE
Confidence            5689999998 8999999999999998    99987 43     222333333    456  556788999999999999


Q ss_pred             Eee
Q 023866           77 FSV   79 (276)
Q Consensus        77 lav   79 (276)
                      .-+
T Consensus       229 ~~~  231 (315)
T 1pvv_A          229 TDV  231 (315)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            965

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=95.19  E-value=0.076  Score=42.68  Aligned_cols=85  Identities=19%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCch---hhhc-CCCEEE
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN---AVVE-YSDVVV   76 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~---~~~~-~aDvI~   76 (276)
                      |.....+++++++.|+|+|..|..++..|.+.++    ++..++|-+++.. .  -.|+.+....+   +..+ ..+-+|
T Consensus         3 ~~~~~~~~~~k~v~IiGAGg~g~~v~~~l~~~~~----~~vgfiDd~~~~~-~--~~g~~Vlg~~~~~~~~~~~~~~~v~   75 (220)
T 4ea9_A            3 MGAASASLAIGGVVIIGGGGHAKVVIESLRACGE----TVAAIVDADPTRR-A--VLGVPVVGDDLALPMLREQGLSRLF   75 (220)
T ss_dssp             -----CCCCSSCEEEECCSHHHHHHHHHHHHTTC----CEEEEECSCC----C--BTTBCEEESGGGHHHHHHTTCCEEE
T ss_pred             ccccccccCCCCEEEEcCCHHHHHHHHHHHhCCC----EEEEEEeCCcccC-c--CCCeeEECCHHHHHHhhcccccEEE
Confidence            3455566677899999999999999999988787    7765547665432 1  24666543322   2222 356789


Q ss_pred             EeeCcccH-HHHHHHHh
Q 023866           77 FSVKPQVD-KAAVITEE   92 (276)
Q Consensus        77 lav~~~~~-~~vl~~~~   92 (276)
                      ++++.... +.+++.+.
T Consensus        76 iAIg~~~~R~~i~~~l~   92 (220)
T 4ea9_A           76 VAIGDNRLRQKLGRKAR   92 (220)
T ss_dssp             ECCCCHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHH
Confidence            99986544 45555553

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.19  E-value=0.061  Score=46.26  Aligned_cols=67  Identities=18%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHH----HcC--ceeccCchhhhcCCCE
Q 023866            8 AESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFE----SIG--VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         8 ~~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~----~~g--~~~~~~~~~~~~~aDv   74 (276)
                      .+..||+|||=|  +|+.+++..+.+-|.    +|+++ .+     .++-.+.++    +.|  +.++.++.++++++|+
T Consensus       153 l~gl~ia~vGD~~~~va~Sl~~~~~~~G~----~v~~~-~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv  227 (333)
T 1duv_G          153 FNEMTLVYAGDARNNMGNSMLEAAALTGL----DLRLV-APQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADF  227 (333)
T ss_dssp             GGGCEEEEESCTTSHHHHHHHHHHHHHCC----EEEEE-CCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSE
T ss_pred             CCCcEEEEECCCccchHHHHHHHHHHcCC----EEEEE-CCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCE
Confidence            356899999986  999999999999998    99988 44     222223232    466  5567889999999999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      |..-+
T Consensus       228 vytd~  232 (333)
T 1duv_G          228 IYTDV  232 (333)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99965

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.18  E-value=0.029  Score=47.95  Aligned_cols=66  Identities=8%  Similarity=0.094  Sum_probs=44.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH---HHHHHHc-----Ccee-----c--cCchhhhcCC
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---RDAFESI-----GVKV-----L--SDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~---~~~l~~~-----g~~~-----~--~~~~~~~~~a   72 (276)
                      ++++|.|.| +|-+|+.++..|++.|+    +|++. .|+++.   .+.+.+.     ++..     .  .+..++++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY----TVRAT-VRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGC   78 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC
Confidence            457899998 79999999999999999    99988 777653   2222111     1221     1  1234567789


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||-+.
T Consensus        79 d~Vih~A   85 (337)
T 2c29_D           79 TGVFHVA   85 (337)
T ss_dssp             SEEEECC
T ss_pred             CEEEEec
Confidence            9998754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.18  E-value=0.042  Score=47.99  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=56.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchh----hhcCCCEEEEeeCcc-
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNA----VVEYSDVVVFSVKPQ-   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~----~~~~aDvI~lav~~~-   82 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|++. ++++++.+.+++.|+...  .+..+    +....|+||-++... 
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~Ga----~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~  269 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAMGA----HVVAF-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH  269 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH
Confidence            4689999999999999888777887    88888 999999998888886421  11112    224679999988644 


Q ss_pred             cHHHHHHHH
Q 023866           83 VDKAAVITE   91 (276)
Q Consensus        83 ~~~~vl~~~   91 (276)
                      .+...+.-+
T Consensus       270 ~~~~~~~~l  278 (369)
T 1uuf_A          270 NLDDFTTLL  278 (369)
T ss_dssp             CHHHHHTTE
T ss_pred             HHHHHHHHh
Confidence            455554433

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.15  E-value=0.041  Score=47.36  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=54.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--c---Cchhhh----cCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--S---DNNAVV----EYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~---~~~~~~----~~aDvI~lav~   80 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|++. ++++++.+.+++.|....  .   +..+.+    ...|+||.++.
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g  241 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMGL----RVAAV-DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV  241 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence            4689999999999999988888888    99999 999999999888886421  1   111111    25688887764


Q ss_pred             -cccHHHHHHHH
Q 023866           81 -PQVDKAAVITE   91 (276)
Q Consensus        81 -~~~~~~vl~~~   91 (276)
                       +..+...+.-+
T Consensus       242 ~~~~~~~~~~~l  253 (340)
T 3s2e_A          242 SPKAFSQAIGMV  253 (340)
T ss_dssp             CHHHHHHHHHHE
T ss_pred             CHHHHHHHHHHh
Confidence             33444444433

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.11  E-value=0.02  Score=50.53  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ++.++|.|||+|..|.++|..|.+.|+    +|+++ +|++.
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~----~V~v~-E~~~~   57 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGI----DCDVY-EAVKE   57 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC----CEEEE-eCCCC
Confidence            346789999999999999999999999    99999 88653

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.10  E-value=0.084  Score=45.42  Aligned_cols=66  Identities=20%  Similarity=0.215  Sum_probs=51.3

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHH----HcC--ceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFE----SIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|+|=|  +|+.+++..+.+-|.    +|+++ .+     .++-.+.++    +.|  +.++.++.++++++|+|
T Consensus       154 ~gl~va~vGD~~~~va~Sl~~~~~~~G~----~v~~~-~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvv  228 (335)
T 1dxh_A          154 HDISYAYLGDARNNMGNSLLLIGAKLGM----DVRIA-APKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFV  228 (335)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEE
T ss_pred             CCeEEEEecCCccchHHHHHHHHHHcCC----EEEEE-CCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEE
Confidence            56899999996  999999999999998    99988 44     222223332    456  55678899999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus       229 ytd~  232 (335)
T 1dxh_A          229 HTDV  232 (335)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9965

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=95.09  E-value=0.069  Score=49.97  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~--   62 (276)
                      ..+|.|||+|.+|+.++.+|...|.   .+|+++ |.+.                   .|++    .+++  .++.+.  
T Consensus        17 ~s~VlVVGaGGLGsevak~La~aGV---G~Itlv-D~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~   92 (640)
T 1y8q_B           17 GGRVLVVGAGGIGCELLKNLVLTGF---SHIDLI-DLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAY   92 (640)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEE
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCC---CeEEEe-cCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEE
Confidence            4689999999999999999999997   478887 6532                   1222    2222  233321  


Q ss_pred             -c----C--chhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           63 -S----D--NNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        63 -~----~--~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                       .    .  ..+.+.++|+||.|+.....+..+..
T Consensus        93 ~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~  127 (640)
T 1y8q_B           93 HDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR  127 (640)
T ss_dssp             ESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred             ecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHH
Confidence             1    1  23567889999999866555444433

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=95.08  E-value=0.057  Score=44.36  Aligned_cols=44  Identities=14%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~   47 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATAR   47 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            45567888876 8999999999999999    99999 999888776654

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.07  E-value=0.078  Score=45.98  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=51.2

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHH----HcC--ceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFE----SIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|+|=|  +++.+++..+.+-|.    +|+++ .+     .++-.+.++    +.|  +.++.++.++++++|+|
T Consensus       175 ~gl~va~vGD~~~rva~Sl~~~~~~lG~----~v~~~-~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvv  249 (359)
T 2w37_A          175 QGLTLTFMGDGRNNVANSLLVTGAILGV----NIHIV-APKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVV  249 (359)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHHTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE
T ss_pred             CCeEEEEECCCccchHHHHHHHHHHcCC----EEEEE-CCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEE
Confidence            56899999996  999999999999998    99988 43     222223232    356  56788999999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus       250 ytd~  253 (359)
T 2w37_A          250 YTDV  253 (359)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            9965

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.05  E-value=0.1  Score=44.99  Aligned_cols=80  Identities=13%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH----cC-------------------ceec--cC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD   64 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~   64 (276)
                      .||||+|.|.+|.-+.+.|.+.+. +.-+|..+.++ +++....+.+    .|                   +.+.  .+
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~-p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKN-PDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-TTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-CCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            489999999999999999887620 11176655365 4444443331    11                   1122  13


Q ss_pred             chhhh-c--CCCEEEEeeCcccHHHHHHHH
Q 023866           65 NNAVV-E--YSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        65 ~~~~~-~--~aDvI~lav~~~~~~~vl~~~   91 (276)
                      +.++- .  ++|+||.|++...-.+.....
T Consensus        80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~  109 (332)
T 1hdg_O           80 PSKLPWKDLGVDFVIESTGVFRNREKAELH  109 (332)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHH
T ss_pred             hHHCcccccCCCEEEECCccchhHHHHHHH
Confidence            33331 2  799999999887666665554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.03  E-value=0.017  Score=49.50  Aligned_cols=64  Identities=14%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCceec----cC----chhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL----SD----NNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~----~~----~~~~~~~aDvI~lav   79 (276)
                      |+|.|.|+ |.+|+.++..|++. |+    +|++. +|++++.+.+.. .++...    .+    ..++++++|+||-+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A   75 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY----EVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC----EEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC----EEEEE-eCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence            58999987 99999999999998 88    99999 888776544322 233321    11    223456799999864

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.01  E-value=0.02  Score=49.68  Aligned_cols=79  Identities=15%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHH----HHHcCceecc-CchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDA----FESIGVKVLS-DNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~----l~~~g~~~~~-~~~~~~~~aDvI~lav~   80 (276)
                      .|.||||||+ |..|.-|.+.|.+.-   .-+|....+++.  ++...    +. ..+.+.. +..+...++|++|+|+|
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP---~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp   87 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHP---EAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALP   87 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCT---TEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCC---CcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCC
Confidence            3679999976 999999999887653   236665423321  12221    11 2233222 23343478999999999


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      ...-.++...+
T Consensus        88 ~~~s~~~~~~~   98 (351)
T 1vkn_A           88 AGASYDLVREL   98 (351)
T ss_dssp             TTHHHHHHTTC
T ss_pred             cHHHHHHHHHh
Confidence            88887777654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.00  E-value=0.042  Score=46.99  Aligned_cols=75  Identities=15%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCch---hhh------cCCCEEE
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNN---AVV------EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~---~~~------~~aDvI~   76 (276)
                      ...+|.|+| +|.+|...++.+...|.    +|++. ++++++.+.+++.|....  .+..   +.+      ...|+||
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvi  214 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGA----KLIGT-VSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVY  214 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEE
Confidence            356899999 79999999998888898    99999 999999998888775321  1111   111      2467777


Q ss_pred             EeeCcccHHHHH
Q 023866           77 FSVKPQVDKAAV   88 (276)
Q Consensus        77 lav~~~~~~~vl   88 (276)
                      -++....+...+
T Consensus       215 d~~g~~~~~~~~  226 (325)
T 3jyn_A          215 DGVGQDTWLTSL  226 (325)
T ss_dssp             ESSCGGGHHHHH
T ss_pred             ECCChHHHHHHH
Confidence            776654444444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.98  E-value=0.021  Score=48.81  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH----HHHHH---cCcee-cc---C---chhhhc--C
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR----DAFES---IGVKV-LS---D---NNAVVE--Y   71 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~----~~l~~---~g~~~-~~---~---~~~~~~--~   71 (276)
                      .+|+|.|.|+ |.+|+.+++.|++.|+    +|++. +|++++.    +.+..   .++.. ..   +   ..++++  .
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY----DVVIA-DNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP   78 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC----cEEEE-ecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccC
Confidence            4578999985 9999999999999999    99999 8875443    22222   13322 11   1   223444  7


Q ss_pred             CCEEEEee
Q 023866           72 SDVVVFSV   79 (276)
Q Consensus        72 aDvI~lav   79 (276)
                      +|+||-+.
T Consensus        79 ~d~vih~A   86 (341)
T 3enk_A           79 ITAAIHFA   86 (341)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECc
Confidence            89999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.95  E-value=0.11  Score=45.75  Aligned_cols=70  Identities=10%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c-C---chhhh------cCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-D---NNAVV------EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~---~~~~~------~~aDvI~l   77 (276)
                      ...+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+... + +   ..+.+      ...|+||-
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid  288 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGA---SKVILS-EPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLE  288 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence            34689999999999988887777775   367888 999999998888886522 1 1   11111      25888988


Q ss_pred             eeCcc
Q 023866           78 SVKPQ   82 (276)
Q Consensus        78 av~~~   82 (276)
                      ++...
T Consensus       289 ~~g~~  293 (404)
T 3ip1_A          289 ATGVP  293 (404)
T ss_dssp             CSSCH
T ss_pred             CCCCc
Confidence            88654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.95  E-value=0.05  Score=44.91  Aligned_cols=43  Identities=12%  Similarity=0.179  Sum_probs=35.7

Q ss_pred             CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|.|+ | .+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~   65 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA----DVVIS-DYHERRLGETRD   65 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHHH
Confidence            3466788898 8 599999999999999    99999 999888765543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.95  E-value=0.03  Score=45.51  Aligned_cols=43  Identities=12%  Similarity=0.168  Sum_probs=35.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.++|-|.|+ |.+|.++++.|++.|  +    +|++. +|++++.+.+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~----~V~~~-~r~~~~~~~l~~   47 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR----HIIAT-ARDVEKATELKS   47 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC----EEEEE-ESSGGGCHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc----EEEEE-ecCHHHHHHHHh
Confidence            4567777765 999999999999999  8    99999 999887776654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.94  E-value=0.069  Score=46.10  Aligned_cols=79  Identities=15%  Similarity=0.078  Sum_probs=55.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c----Cchhhh------cCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV------EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~------~~aDvI~l   77 (276)
                      ...+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+... +    +..+.+      ...|+||-
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga---~~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid  242 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGA---YPVIVS-EPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLE  242 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC---CSEEEE-CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence            34689999999999999988777774   268888 999999988888776421 1    111111      14788888


Q ss_pred             eeCc-ccHHHHHHHH
Q 023866           78 SVKP-QVDKAAVITE   91 (276)
Q Consensus        78 av~~-~~~~~vl~~~   91 (276)
                      ++.. ..+...+.-+
T Consensus       243 ~~g~~~~~~~~~~~l  257 (348)
T 2d8a_A          243 FSGAPKALEQGLQAV  257 (348)
T ss_dssp             CSCCHHHHHHHHHHE
T ss_pred             CCCCHHHHHHHHHHH
Confidence            8864 4455555444

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.94  E-value=0.069  Score=45.81  Aligned_cols=78  Identities=13%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCch---hhh------cCCCEEE
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNN---AVV------EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~---~~~------~~aDvI~   76 (276)
                      ...+|.|+| +|.+|...++.+...|.    +|++. ++++++.+.+++.|....  .+..   +.+      ...|+||
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vi  222 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGA----HTIAV-ASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASF  222 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEE
Confidence            356899999 79999999998888898    99999 999999998888775421  1111   111      2467887


Q ss_pred             EeeCcccHHHHHHHH
Q 023866           77 FSVKPQVDKAAVITE   91 (276)
Q Consensus        77 lav~~~~~~~vl~~~   91 (276)
                      -++....+...+.-+
T Consensus       223 d~~g~~~~~~~~~~l  237 (334)
T 3qwb_A          223 DSVGKDTFEISLAAL  237 (334)
T ss_dssp             ECCGGGGHHHHHHHE
T ss_pred             ECCChHHHHHHHHHh
Confidence            777655555555444

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=94.92  E-value=0.079  Score=51.26  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCcee---
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV---   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~---   61 (276)
                      ..||.|||+|.+|+.++..|..+|.   .+|+++ |.+.                   .|++    .+++  .++.+   
T Consensus       411 ~~~vlvvG~GglG~~~~~~L~~~Gv---g~i~l~-D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~  486 (805)
T 2nvu_B          411 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  486 (805)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHTTTC---CEEEEE-ECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CcEEEE-CCCeecccccccccccchhhcCChHHHHHHHHHHHHCCCCEEEEE
Confidence            5789999999999999999999997   478888 6542                   1222    2333  23332   


Q ss_pred             ----ccCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           62 ----LSDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        62 ----~~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                          ...+.+.++++|+||.|+.....+..+..
T Consensus       487 ~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~  519 (805)
T 2nvu_B          487 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWING  519 (805)
T ss_dssp             ESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHH
T ss_pred             eccccccHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence                12234667889999999876555544443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.91  E-value=0.077  Score=43.49  Aligned_cols=51  Identities=20%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             CCCCCCC--CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            1 MDAFPIP--AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         1 ~~~~~~~--~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |...|.+  ++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         1 M~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~   54 (252)
T 3f1l_A            1 MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGA----TVILL-GRNEEKLRQVAS   54 (252)
T ss_dssp             CCCCCCTTTTTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCcCCcccccCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            4444443  34556667765 8999999999999999    99999 999988766543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.89  E-value=0.065  Score=46.16  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=53.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC---chhh----h--cCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---NNAV----V--EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~---~~~~----~--~~aDvI~l   77 (276)
                      ...+|.|+|+|.+|...++.+... |.    +|++. ++++++.+.+++.|+... +.   ..+.    .  ...|+||-
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~----~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d  245 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAA----RVIAV-DLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFD  245 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCC----EEEEE-ESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC----EEEEE-cCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEE
Confidence            356899999999999888766655 55    89998 999999999988886422 11   1111    1  15778887


Q ss_pred             eeCcc-cHHHHHHHH
Q 023866           78 SVKPQ-VDKAAVITE   91 (276)
Q Consensus        78 av~~~-~~~~vl~~~   91 (276)
                      ++... .+...+.-+
T Consensus       246 ~~G~~~~~~~~~~~l  260 (345)
T 3jv7_A          246 FVGAQSTIDTAQQVV  260 (345)
T ss_dssp             SSCCHHHHHHHHHHE
T ss_pred             CCCCHHHHHHHHHHH
Confidence            77654 444444433

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.89  E-value=0.025  Score=47.74  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC-----chhhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD-----NNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~-----~~~~~~~aDvI~lav   79 (276)
                      |||.|.|+ |.+|+.+++.|++.|+    +|++. +|+++........++... .|     ..++++. |+||-+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A   70 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY----EVVVV-DNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC----EEEEE-eCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECC
Confidence            68999988 9999999999999999    99999 887655433222333211 11     2233444 9999865

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=94.85  E-value=0.066  Score=44.46  Aligned_cols=50  Identities=16%  Similarity=0.217  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |++.+. ++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         1 M~~~~~-l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~   51 (270)
T 1yde_A            1 MATGTR-YAGKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQ   51 (270)
T ss_dssp             ---CCT-TTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCCC-CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            544433 45567777765 8999999999999999    99999 999988776654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.83  E-value=0.083  Score=43.07  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=35.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~   53 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA----RLILI-DREAAALDRAAQ   53 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            4566777765 9999999999999999    99999 999887766543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.82  E-value=0.074  Score=45.97  Aligned_cols=78  Identities=19%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-----hhhh------cCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-----NAVV------EYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-----~~~~------~~aDvI~la   78 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+.     .+.+      ...|+||-+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~  242 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGA---GRIFAV-GSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIA  242 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC---SSEEEE-CCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-CCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence            4679999999999988887776674   368888 999999998888886522111     1111      147888877


Q ss_pred             eCc-ccHHHHHHHH
Q 023866           79 VKP-QVDKAAVITE   91 (276)
Q Consensus        79 v~~-~~~~~vl~~~   91 (276)
                      +.. ..+...+.-+
T Consensus       243 ~g~~~~~~~~~~~l  256 (352)
T 3fpc_A          243 GGDVHTFAQAVKMI  256 (352)
T ss_dssp             SSCTTHHHHHHHHE
T ss_pred             CCChHHHHHHHHHH
Confidence            754 3455555444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.78  E-value=0.071  Score=45.64  Aligned_cols=46  Identities=13%  Similarity=0.167  Sum_probs=39.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      ...+|.|+|+ |.+|..+++.+...|.    +|+++ +|++++.+.+++.|.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~  191 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGF  191 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCC
Confidence            3468999998 9999999999999998    99999 999999888866664

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.77  E-value=0.075  Score=46.03  Aligned_cols=76  Identities=13%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             CCCeEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--C---chhhh-----cCCCEEEE
Q 023866            9 ESFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--D---NNAVV-----EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~---~~~~~-----~~aDvI~l   77 (276)
                      ...+|.|+ |+|.+|...++.+...|.    +|++. ++++++.+.+++.|....-  +   ..+.+     ...|+||-
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid  241 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGA----EVYAT-AGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILD  241 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEE
Confidence            34689999 679999999999988998    89999 9999999988887754211  1   11111     14677777


Q ss_pred             eeCcccHHHHHH
Q 023866           78 SVKPQVDKAAVI   89 (276)
Q Consensus        78 av~~~~~~~vl~   89 (276)
                      ++....+...+.
T Consensus       242 ~~g~~~~~~~~~  253 (353)
T 4dup_A          242 MIGAAYFERNIA  253 (353)
T ss_dssp             SCCGGGHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            776554444443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.77  E-value=0.013  Score=52.37  Aligned_cols=196  Identities=11%  Similarity=0.072  Sum_probs=101.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeC----CC----HH-HHHHHHH--------cCce-eccCchhhhc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----SN----LK-RRDAFES--------IGVK-VLSDNNAVVE   70 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----r~----~~-~~~~l~~--------~g~~-~~~~~~~~~~   70 (276)
                      +..||.|+|+|.+|.+++..|.+.|. ++.+|+++ |    |+    .. +.+.+..        .+.. ...+..++++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~-~~~~I~vv-d~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~  262 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGV-KPENVRVV-ELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK  262 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CGGGEEEE-EEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCC-CcCeEEEE-EccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence            45799999999999999999999984 33589999 8    76    32 2111221        1111 1234567788


Q ss_pred             CCCEEEEeeCc--ccH-HHHHHHHhhccccccCCcc----cCCCCcccHHHHHHHcCCCcEE-EEecCccccccCcc--e
Q 023866           71 YSDVVVFSVKP--QVD-KAAVITEEAFGFCCCRSEI----ERPSGLQRWSRWVEWTGHSRFI-RVMPNTPSAVGEAA--T  140 (276)
Q Consensus        71 ~aDvI~lav~~--~~~-~~vl~~~~~~~~~~~~~~l----~~~~g~~~~~~l~~~l~~~~vv-~~~p~~~~~~~~g~--~  140 (276)
                      ++|+||=++++  ..+ ++.+..+.     + .+++    ++.... ..+..+++  +..++ ......+.......  .
T Consensus       263 ~aDVlInaT~~~~G~~~~e~v~~m~-----~-~~iVfDLynP~~t~-~~~~A~~~--G~~ivatG~~ml~~Q~nn~~~FP  333 (439)
T 2dvm_A          263 DADVLISFTRPGPGVIKPQWIEKMN-----E-DAIVFPLANPVPEI-LPEEAKKA--GARIVATGRSDYPNQINNLLGFP  333 (439)
T ss_dssp             TCSEEEECSCCCSSSSCHHHHTTSC-----T-TCEEEECCSSSCSS-CHHHHHHH--TCSEECBSCSSSSSBCCGGGTHH
T ss_pred             cCCEEEEcCCCccCCCChHHHHhcC-----C-CCEEEECCCCCCcc-hHHHHHHc--CCeEEcCCCchhHHHHHHHhccc
Confidence            99999999986  433 23333331     0 2332    222333 34555554  33444 22222222211100  0


Q ss_pred             E------eecCCCCCHHHHHHH-HHHhhhcCce---EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCC-----
Q 023866          141 V------MSLGGTATEEDGELI-GKLFGSVGKI---WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP-----  205 (276)
Q Consensus       141 ~------i~~~~~~~~~~~~~v-~~ll~~~G~~---~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~-----  205 (276)
                      .      .+.....+++-+-.. ..+-+.....   ..+ +...|         +-....+..+.++.+.+.|+.     
T Consensus       334 Gi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~i~-P~~~~---------~~v~~~va~av~~~a~~~g~a~~~~~  403 (439)
T 2dvm_A          334 GIFRGALDVRARTITDSMIIAAAKAIASIVEEPSEENII-PSPLN---------PIVYAREARAVAEEAMKEGVARTKVK  403 (439)
T ss_dssp             HHHHHHHHTTCSCCCHHHHHHHHHHHHHTSSSCBTTBCS-CCTTC---------HHHHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred             CchHHHHhcCCCCCCHHHHHHHHHHHHhhCccccCCccC-CCccc---------chhhHHHHHHHHHHHHHhCCCCCCCC
Confidence            0      111233455544333 3333333211   111 11111         333344566777777777764     


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023866          206 RELALGLASQTVLGAASMVT  225 (276)
Q Consensus       206 ~~~a~~~~~~~~~g~~~~~~  225 (276)
                      +++.++.+...+..+..++.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~  423 (439)
T 2dvm_A          404 GEWVEEHTIRLIEFYENVIA  423 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhHHHHH
Confidence            56677777777776666553

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=94.76  E-value=0.12  Score=46.22  Aligned_cols=68  Identities=13%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~   68 (276)
                      .+.++|+|.|.|++|+..++.|.+.|.    +|+ +. |+          +.+.+.++++ .|       .... ++.++
T Consensus       233 l~g~~vaVqGfGnVG~~~a~~L~e~Ga----kvVavs-D~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei  306 (440)
T 3aog_A          233 VEGARVAIQGFGNVGNAAARAFHDHGA----RVVAVQ-DHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADF  306 (440)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHH
T ss_pred             ccCCEEEEeccCHHHHHHHHHHHHCCC----EEEEEE-cCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-Cchhh
Confidence            456899999999999999999999997    776 66 76          5677766665 22       1211 23333


Q ss_pred             h-cCCCEEEEeeCc
Q 023866           69 V-EYSDVVVFSVKP   81 (276)
Q Consensus        69 ~-~~aDvI~lav~~   81 (276)
                      . .+|||++-|...
T Consensus       307 ~~~~~DIlvPcA~~  320 (440)
T 3aog_A          307 WGLPVEFLVPAALE  320 (440)
T ss_dssp             TTCCCSEEEECSSS
T ss_pred             hcCCCcEEEecCCc
Confidence            2 368888887543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=94.76  E-value=0.017  Score=50.08  Aligned_cols=79  Identities=14%  Similarity=0.243  Sum_probs=47.7

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +||+||| .|..|.-|.+.|.+..| +..++....+++..  +.. +......+.....+..+++|+||+|+|.....+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~f-p~~el~~~~s~~~aG~~~~-~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~   79 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDF-PASAVRFFASARSQGRKLA-FRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQ   79 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTSSCEEE-ETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CceEEEEEECcccCCCcee-ecCCceEEEeCCHHHhccCCEEEECCChHHHHHH
Confidence            6899999 59999999998777644 32345544133211  010 1111122211112345789999999998877777


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ...+
T Consensus        80 a~~~   83 (344)
T 3tz6_A           80 APRF   83 (344)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=94.76  E-value=0.086  Score=44.84  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             CCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHHHcCc--eeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~la   78 (276)
                      +..||+|||=|   ++..+++..+.+-|.    +|+++ .+     .++-.+.+++.|.  .++.++.++++++|+|..-
T Consensus       154 ~gl~va~vGD~~~~rva~Sl~~~~~~~G~----~v~~~-~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~  228 (308)
T 1ml4_A          154 DGLKIGLLGDLKYGRTVHSLAEALTFYDV----ELYLI-SPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT  228 (308)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred             CCeEEEEeCCCCcCchHHHHHHHHHHCCC----EEEEE-CCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEEC
Confidence            46799999984   899999999999998    99887 43     2333444555564  4678899999999999986


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      +
T Consensus       229 ~  229 (308)
T 1ml4_A          229 R  229 (308)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.74  E-value=0.031  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..|.|||+|.-|.+.|..|.++|+    +|+++ ++++
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~----~V~v~-Ek~~   35 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH----QVHLF-DKSR   35 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC----CEEEE-ECCC
Confidence            359999999999999999999999    99999 8764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.73  E-value=0.026  Score=47.79  Aligned_cols=59  Identities=10%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEee
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav   79 (276)
                      ..|+|.|.|+ |.+|+.++..|++.|+    +|++. +|+.+       ..+.-..+..++++  ++|+||-+.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~v~~~-~r~~~-------~D~~d~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD----VELVL-RTRDE-------LNLLDSRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT----EEEEC-CCTTT-------CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC----eEEEE-ecCcc-------CCccCHHHHHHHHHhcCCCEEEEcC
Confidence            4579999985 9999999999999998    89888 77531       11111112334455  789999876

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.72  E-value=0.073  Score=43.51  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=36.6

Q ss_pred             CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ..++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~   48 (247)
T 2jah_A            3 SALQGKVALITGASSGIGEATARALAAEGA----AVAIA-ARRVEKLRALG   48 (247)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence            3345567777765 8999999999999999    99999 99988776554

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.71  E-value=0.069  Score=46.68  Aligned_cols=76  Identities=20%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-------hhhh-----cCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+.       .+.+     ...|+||-
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid  269 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGA---SRIIGI-DIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE  269 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTC---SCEEEE-CSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence            4689999999999988887777775   368888 999999998888887532111       1111     14788888


Q ss_pred             eeCcc-cHHHHHH
Q 023866           78 SVKPQ-VDKAAVI   89 (276)
Q Consensus        78 av~~~-~~~~vl~   89 (276)
                      ++... .+...+.
T Consensus       270 ~~g~~~~~~~~~~  282 (378)
T 3uko_A          270 CIGNVSVMRAALE  282 (378)
T ss_dssp             CSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            87653 3444443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.71  E-value=0.062  Score=43.63  Aligned_cols=43  Identities=14%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .++++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~----~V~~~-~r~~~~~~~~~~   45 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH----QVSMM-GRRYQRLQQQEL   45 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            4456777775 8999999999999999    99999 999988776654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.70  E-value=0.052  Score=47.29  Aligned_cols=68  Identities=10%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---HHHHHHHHcCceecc--Cchhhh----cCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFESIGVKVLS--DNNAVV----EYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~aDvI~lav~   80 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++   ++.+.+++.|+...+  +..+.+    ...|+||-++.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g  255 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL----EVWMA-NRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATG  255 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC----EEEEE-ESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCC
Confidence            5789999999999999998888898    99999 9988   888877777875431  111111    24788888775


Q ss_pred             cc
Q 023866           81 PQ   82 (276)
Q Consensus        81 ~~   82 (276)
                      ..
T Consensus       256 ~~  257 (366)
T 2cdc_A          256 AD  257 (366)
T ss_dssp             CC
T ss_pred             Ch
Confidence            43

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.69  E-value=0.038  Score=49.25  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      .+||+|||.|.+|..++..+.+.|+    +|.++ |+++.
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~----~v~v~-d~~~~   69 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGY----RVAVL-DPDPA   69 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCCc
Confidence            4689999999999999999999999    99998 87654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.68  E-value=0.028  Score=48.24  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=44.8

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHH-----HHHHHHHcCcee-cc------CchhhhcCCCE
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK-----RRDAFESIGVKV-LS------DNNAVVEYSDV   74 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~-~~------~~~~~~~~aDv   74 (276)
                      ||+|.|.| .|.+|+.++..|++.  |+    +|++. +|++.     .++.+...++.. ..      +..++++.+|+
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   78 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV----HVTVL-DKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADA   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC----EEEEE-ECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC----EEEEE-eCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCE
Confidence            67999998 599999999999998  78    99998 87542     222121123321 11      12355678899


Q ss_pred             EEEeeC
Q 023866           75 VVFSVK   80 (276)
Q Consensus        75 I~lav~   80 (276)
                      ||-+.-
T Consensus        79 vih~A~   84 (348)
T 1oc2_A           79 IVHYAA   84 (348)
T ss_dssp             EEECCS
T ss_pred             EEECCc
Confidence            998863

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.66  E-value=0.083  Score=43.81  Aligned_cols=43  Identities=16%  Similarity=0.044  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +..++|-|.|+ |.+|..+++.|.+.|+    +|++. +|++++.+.+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~----~V~~~-~r~~~~~~~~~   72 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETA   72 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-EcCHHHHHHHH
Confidence            45567888865 8999999999999998    99999 99988766543

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=94.64  E-value=0.18  Score=43.74  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEE-eCCCHHHHHHHHH-cCceec-----cCc-------------
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTA-VHSNLKRRDAFES-IGVKVL-----SDN-------------   65 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~-~~r~~~~~~~l~~-~g~~~~-----~~~-------------   65 (276)
                      |+.+||+|+| +|.+|..-+.-+.+. .+    +|... .++|.+++.+..+ ++....     .+.             
T Consensus         1 M~~k~i~ILGsTGSIG~~tldVi~~~~~~----~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~   76 (376)
T 3a06_A            1 MEERTLVILGATGSIGTQTLDVLKKVKGI----RLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHS   76 (376)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHSCSE----EEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTH
T ss_pred             CCcceEEEECCCCHHHHHHHHHHHhCCCe----EEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHH
Confidence            3457899999 699999988777665 34    66533 4899888765544 554322     111             


Q ss_pred             -hhhh--cCCCEEEEeeCcc-cHHHHHHHH
Q 023866           66 -NAVV--EYSDVVVFSVKPQ-VDKAAVITE   91 (276)
Q Consensus        66 -~~~~--~~aDvI~lav~~~-~~~~vl~~~   91 (276)
                       .+++  .++|+|+.+++.. .+...+..+
T Consensus        77 l~el~~~~~~D~Vv~AivG~aGL~ptlaAi  106 (376)
T 3a06_A           77 IEEMLEALKPDITMVAVSGFSGLRAVLASL  106 (376)
T ss_dssp             HHHHHHHHCCSEEEECCCSTTHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEEeeCHHHHHHHHHHH
Confidence             2333  3699999999865 466666555

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.63  E-value=0.041  Score=45.38  Aligned_cols=42  Identities=10%  Similarity=0.106  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCC---CCCCCeEEEEeCCCHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSG---VLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g---~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      .++++|-|.|+ |.+|.++++.|++.|   +    +|++. +|++++.+.+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~----~V~~~-~r~~~~~~~~   64 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ----HLFTT-CRNREQAKEL   64 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS----EEEEE-ESCTTSCHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc----EEEEE-ecChhhhHHH
Confidence            44566777765 999999999999999   8    99999 8987654433

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.61  E-value=0.15  Score=44.33  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC-------chhhh-----cCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVV-----EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+       ..+.+     ...|+||-
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid  267 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE  267 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence            4689999999999988887777775   258888 99999999888888642111       11112     14788888


Q ss_pred             eeCc-ccHHHHHHHH
Q 023866           78 SVKP-QVDKAAVITE   91 (276)
Q Consensus        78 av~~-~~~~~vl~~~   91 (276)
                      ++.. ..+...+.-+
T Consensus       268 ~~g~~~~~~~~~~~l  282 (374)
T 2jhf_A          268 VIGRLDTMVTALSCC  282 (374)
T ss_dssp             CSCCHHHHHHHHHHB
T ss_pred             CCCCHHHHHHHHHHh
Confidence            8864 3455554443

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.59  E-value=0.078  Score=42.96  Aligned_cols=44  Identities=11%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      ++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~   49 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA----KVVAV-TRTNSDLVSLAK   49 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            45678888877 9999999999999999    99999 999888776654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.59  E-value=0.021  Score=49.91  Aligned_cols=68  Identities=13%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHH-HHHH-HcCcee-cc---C---chhhhcCCCEEE
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRR-DAFE-SIGVKV-LS---D---NNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~-~~l~-~~g~~~-~~---~---~~~~~~~aDvI~   76 (276)
                      +.+|+|.|.|+ |.+|+.++..|++.| +    +|++. +|+++.. +.+. ..++.. ..   +   ..++++.+|+||
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~-~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVN----QVHVV-DNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCS----EEEEE-CCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCc----eEEEE-ECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            35689999986 999999999999999 8    99999 8876532 1121 123322 11   1   234566899999


Q ss_pred             EeeC
Q 023866           77 FSVK   80 (276)
Q Consensus        77 lav~   80 (276)
                      -+.-
T Consensus       105 h~A~  108 (377)
T 2q1s_A          105 HLAT  108 (377)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8764

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.58  E-value=0.18  Score=43.41  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH----c-----------C---------ceec--
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------G---------VKVL--   62 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~----~-----------g---------~~~~--   62 (276)
                      ++||||+|+|.+|+.+.+.|.+.++ +.-+|...+|. +++....+-+    .           +         +.+.  
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~-p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~   79 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   79 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSS-CSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCC-CCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence            3689999999999999999887632 22355544243 3333333322    1           1         0111  


Q ss_pred             cCchhh-hc--CCCEEEEeeCcccHHHHHHHH
Q 023866           63 SDNNAV-VE--YSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        63 ~~~~~~-~~--~aDvI~lav~~~~~~~vl~~~   91 (276)
                      .++.++ ..  ++|+||.|++...-.+.....
T Consensus        80 ~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~  111 (337)
T 1rm4_O           80 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKH  111 (337)
T ss_dssp             SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHH
T ss_pred             CChhhCcccccCCCEEEECCCchhhHHHHHHH
Confidence            223332 12  689999999877655555544

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.56  E-value=0.063  Score=44.19  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=37.7

Q ss_pred             CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.++.+++-|.|+ |.+|.++++.|.+.|+    +|++. +|++++.+.+.+
T Consensus         2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~   48 (257)
T 3imf_A            2 NAMKEKVVIITGGSSGMGKGMATRFAKEGA----RVVIT-GRTKEKLEEAKL   48 (257)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence            3456666777765 8999999999999999    99999 999988776654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.54  E-value=0.082  Score=45.32  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-HHcCce
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVK   60 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-~~~g~~   60 (276)
                      ...+|.|+|+ |.+|...++.+...|.    +|+++ ++++++.+.+ ++.|+.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~~g~~  197 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGC----RVVGI-AGGAEKCRFLVEELGFD  197 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHcCCC
Confidence            3568999999 9999999999888898    99999 9999999988 667754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.54  E-value=0.08  Score=45.57  Aligned_cols=78  Identities=10%  Similarity=0.029  Sum_probs=54.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c-Cch---hhh------cCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DNN---AVV------EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-~~~---~~~------~~aDvI~   76 (276)
                      ...+|.|+|+ |.+|...++.+...|.    +|++. ++++++.+.+++.|.... + +..   +.+      ...|+||
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~----~Vi~~-~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi  240 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGA----RVIAT-AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVV  240 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEE
Confidence            3578999999 9999999999888898    99999 999999988877665321 1 111   111      2467777


Q ss_pred             EeeCcccHHHHHHHH
Q 023866           77 FSVKPQVDKAAVITE   91 (276)
Q Consensus        77 lav~~~~~~~vl~~~   91 (276)
                      -++-+..+...+.-+
T Consensus       241 ~~~g~~~~~~~~~~l  255 (343)
T 2eih_A          241 DHTGALYFEGVIKAT  255 (343)
T ss_dssp             ESSCSSSHHHHHHHE
T ss_pred             ECCCHHHHHHHHHhh
Confidence            777655555555444

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=94.52  E-value=0.038  Score=48.15  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .+|+.++|.|||+|..|.++|..|.+.|+    +|.++ ++++
T Consensus         7 ~~m~~~dVvIVGaG~aGl~~A~~L~~~G~----~v~vi-E~~~   44 (379)
T 3alj_A            7 TPGKTRRAEVAGGGFAGLTAAIALKQNGW----DVRLH-EKSS   44 (379)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-ecCC
Confidence            34667899999999999999999999998    99999 8764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.51  E-value=0.078  Score=44.09  Aligned_cols=43  Identities=12%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ++.+++-|.|+ |.+|..+++.|++.|+    +|++. +|++++.+.+.
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~   73 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELA   73 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHH
Confidence            34567777765 9999999999999999    99999 99988776554

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.50  E-value=0.068  Score=44.74  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+++|  |.+.+|.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga----~V~i~-~r~~~~l~~~~~   71 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGA----RVFIT-GRRKDVLDAAIA   71 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            68877  557899999999999999    99999 999998877654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.50  E-value=0.1  Score=45.48  Aligned_cols=78  Identities=14%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c----Cchhhhc--------CCCEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVVE--------YSDVVV   76 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~~--------~aDvI~   76 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+... +    +..+.+.        ..|+||
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi  258 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGA---TTVILS-TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI  258 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence            4689999999999988887777775   367778 999999988888886522 1    1112222        479999


Q ss_pred             EeeC-cccHHHHHHHH
Q 023866           77 FSVK-PQVDKAAVITE   91 (276)
Q Consensus        77 lav~-~~~~~~vl~~~   91 (276)
                      -++. +..+...+.-+
T Consensus       259 d~~G~~~~~~~~~~~l  274 (370)
T 4ej6_A          259 ECAGVAETVKQSTRLA  274 (370)
T ss_dssp             ECSCCHHHHHHHHHHE
T ss_pred             ECCCCHHHHHHHHHHh
Confidence            9886 44556665544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.48  E-value=0.061  Score=46.77  Aligned_cols=76  Identities=20%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c----Cchhhh-----cCCCEEEEe
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV-----EYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~-----~~aDvI~la   78 (276)
                      ..+|.|+| +|.+|...++.+...|.    +|++. ++++++.+.+++.|+... +    +..+.+     ...|+||-+
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~  238 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKAKC----HVIGT-CSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYES  238 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEEC
Confidence            46899999 79999999998888898    89999 999999988888776421 1    111111     246777777


Q ss_pred             eCcccHHHHHHH
Q 023866           79 VKPQVDKAAVIT   90 (276)
Q Consensus        79 v~~~~~~~vl~~   90 (276)
                      +....+...+.-
T Consensus       239 ~g~~~~~~~~~~  250 (362)
T 2c0c_A          239 VGGAMFDLAVDA  250 (362)
T ss_dssp             SCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            765444444433

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.48  E-value=0.096  Score=45.03  Aligned_cols=47  Identities=13%  Similarity=0.195  Sum_probs=40.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCce
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVK   60 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~   60 (276)
                      ...+|.|+|+ |.+|...++.+...|.    +|+++ +|++++.+.++ +.|..
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~----~V~~~-~~~~~~~~~~~~~~g~~  203 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGC----YVVGS-AGSKEKVDLLKTKFGFD  203 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTSCCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHcCCc
Confidence            3468999997 9999999999888898    99999 99999998887 56753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.47  E-value=0.056  Score=46.59  Aligned_cols=75  Identities=16%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cC--chhhh------cCCCEEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD--NNAVV------EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~--~~~~~------~~aDvI~l   77 (276)
                      ...+|.|+|+ |.+|...++.+...|.    +|++. ++++++.+.+++.|....  .+  ..+.+      ...|+||-
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid  233 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGA----KVIAV-VNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVD  233 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEE
Confidence            3468999998 9999999998888898    99999 999999988888775421  11  11111      14677777


Q ss_pred             eeCcccHHHHH
Q 023866           78 SVKPQVDKAAV   88 (276)
Q Consensus        78 av~~~~~~~vl   88 (276)
                      ++-...+...+
T Consensus       234 ~~g~~~~~~~~  244 (342)
T 4eye_A          234 PIGGPAFDDAV  244 (342)
T ss_dssp             SCC--CHHHHH
T ss_pred             CCchhHHHHHH
Confidence            76554444443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.45  E-value=0.048  Score=47.39  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c-----Cchhhh-cCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-----DNNAVV-EYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~-----~~~~~~-~~aDvI~lav~~   81 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++++.+.+++.|+... +     +..+.+ ...|+||-++..
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAMGA----ETYVI-SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence            4689999999999999888777887    89998 999999988888786421 1     111112 368999999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.45  E-value=0.1  Score=44.50  Aligned_cols=46  Identities=11%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      ...+|.|+| +|.+|..+++.+...|.    +|+++ +|++++.+.+++.|.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~----~V~~~-~~~~~~~~~~~~~g~  186 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGA----KLIGT-VGTAQKAQSALKAGA  186 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHcCC
Confidence            356899999 69999999999988998    99999 999999888877664

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.44  E-value=0.13  Score=44.90  Aligned_cols=76  Identities=16%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC-------chhhh-----cCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVV-----EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+       ..+.+     ...|+||-
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid  267 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE  267 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence            4689999999999988887766674   268888 99999999988888642111       11112     15788888


Q ss_pred             eeCc-ccHHHHHH
Q 023866           78 SVKP-QVDKAAVI   89 (276)
Q Consensus        78 av~~-~~~~~vl~   89 (276)
                      ++.. ..+...+.
T Consensus       268 ~~g~~~~~~~~~~  280 (373)
T 1p0f_A          268 CAGRIETMMNALQ  280 (373)
T ss_dssp             CSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            8864 34444443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.44  E-value=0.0055  Score=50.95  Aligned_cols=63  Identities=17%  Similarity=0.064  Sum_probs=44.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----c--cCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----L--SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~aDvI~lav   79 (276)
                      ++++|-|.| .|.+|..++..|.+.|+    +|++. +|++++.+   ..++..     .  .+..++++..|+||-+.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~----~V~~~-~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A   72 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE----ILRLA-DLSPLDPA---GPNEECVQCDLADANAVNAMVAGCDGIVHLG   72 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE----EEEEE-ESSCCCCC---CTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC----EEEEE-ecCCcccc---CCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence            456788887 59999999999999998    99999 88875432   122221     1  12335567899999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.43  E-value=0.1  Score=45.69  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=53.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHHcCcee-cc-C---chh---hh------cCCCE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKV-LS-D---NNA---VV------EYSDV   74 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~-~---~~~---~~------~~aDv   74 (276)
                      ..+|.|+|+|.+|...++.+...| .    +|++. ++++++.+.+++.|+.. .+ +   ..+   .+      ...|+
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dv  270 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSLGAE----NVIVI-AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADF  270 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBS----EEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCc----eEEEE-cCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcE
Confidence            468999999999999988877778 5    89999 99999999988888642 11 1   111   11      14688


Q ss_pred             EEEeeCc-ccHHHHHHHH
Q 023866           75 VVFSVKP-QVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~-~~~~~vl~~~   91 (276)
                      ||-++.. ..+...+.-+
T Consensus       271 vid~~g~~~~~~~~~~~l  288 (380)
T 1vj0_A          271 ILEATGDSRALLEGSELL  288 (380)
T ss_dssp             EEECSSCTTHHHHHHHHE
T ss_pred             EEECCCCHHHHHHHHHHH
Confidence            8877753 3455554433

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.40  E-value=0.088  Score=43.50  Aligned_cols=42  Identities=12%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +.+++-|.| .|.+|.++++.|.+.|+    +|++. +|++++.+.+.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~   54 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASK   54 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence            445666776 58999999999999999    99999 99988776543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.37  E-value=0.17  Score=44.03  Aligned_cols=76  Identities=21%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC-------chhhh-----cCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------NNAVV-----EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++.+.+++.|+...-+       ..+.+     ...|+||-
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid  271 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD  271 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence            4689999999999988887776775   258888 99999999888888642111       11111     14788888


Q ss_pred             eeCc-ccHHHHHH
Q 023866           78 SVKP-QVDKAAVI   89 (276)
Q Consensus        78 av~~-~~~~~vl~   89 (276)
                      ++.. ..+...+.
T Consensus       272 ~~G~~~~~~~~~~  284 (376)
T 1e3i_A          272 CAGTAQTLKAAVD  284 (376)
T ss_dssp             SSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            8754 33444443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.37  E-value=0.1  Score=45.21  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             CeEEEEcccHHHHHH-HHHH-HhCCCCCCCe-EEEEeCCCHH---HHHHHHHcCceeccCch--hh--hc----CCCEEE
Q 023866           11 FILGFIGAGKMAESI-AKGV-AKSGVLPPDR-ICTAVHSNLK---RRDAFESIGVKVLSDNN--AV--VE----YSDVVV   76 (276)
Q Consensus        11 ~kIgiIG~G~mG~~l-a~~l-~~~g~~~~~~-V~v~~~r~~~---~~~~l~~~g~~~~~~~~--~~--~~----~aDvI~   76 (276)
                      .+|.|+|+|.+|... ++.+ ...|.    + |++. +++++   +.+.+++.|+... +..  +.  +.    ..|+||
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga----~~Vi~~-~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvi  247 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGY----ENLYCL-GRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYEQMDFIY  247 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCC----CEEEEE-ECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCC----cEEEEE-eCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCCCCCEEE
Confidence            789999999999988 7766 56676    5 9998 89888   8888888887643 211  11  11    468888


Q ss_pred             EeeCcc-cHHHHHHHH
Q 023866           77 FSVKPQ-VDKAAVITE   91 (276)
Q Consensus        77 lav~~~-~~~~vl~~~   91 (276)
                      -++... .+...+.-+
T Consensus       248 d~~g~~~~~~~~~~~l  263 (357)
T 2b5w_A          248 EATGFPKHAIQSVQAL  263 (357)
T ss_dssp             ECSCCHHHHHHHHHHE
T ss_pred             ECCCChHHHHHHHHHH
Confidence            887643 445554443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=94.36  E-value=0.035  Score=48.19  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +..|.|||+|..|.+.|..|.+.|+    +|+++ ++.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~----~V~ll-E~~   49 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK----NTALF-ESG   49 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC----cEEEE-eCC
Confidence            4679999999999999999999998    99999 875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.31  E-value=0.11  Score=46.52  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=40.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ...+|.|+|+ |.+|...++.+...|.    +|++. ++++++.+.+++.|+.
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga----~vi~~-~~~~~~~~~~~~lGa~  267 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGG----IPVAV-VSSAQKEAAVRALGCD  267 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHhcCCC
Confidence            3568999998 9999999998888888    88888 8999999998888864

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.30  E-value=0.2  Score=44.40  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------CHHHHHHHHH-cC-cee-ccCchhh-hcCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-VKV-LSDNNAV-VEYS   72 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-~~~-~~~~~~~-~~~a   72 (276)
                      .+.++|.|.|.|++|+..++.|.+.|.    +|+ ++ |+          +.+.+.++++ .| +.- .-+..++ -.+|
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~Ga----kVVavs-D~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~  290 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGM----RVVAVA-TSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEA  290 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-ETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSC
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC----EEEEEE-cCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCc
Confidence            356899999999999999999999998    777 66 77          7777777765 33 210 1122232 2378


Q ss_pred             CEEEEeeCccc
Q 023866           73 DVVVFSVKPQV   83 (276)
Q Consensus        73 DvI~lav~~~~   83 (276)
                      ||++-|-....
T Consensus       291 DVliP~A~~n~  301 (419)
T 3aoe_E          291 EVLVLAAREGA  301 (419)
T ss_dssp             SEEEECSCTTC
T ss_pred             eEEEecccccc
Confidence            99998865443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.28  E-value=0.12  Score=45.61  Aligned_cols=68  Identities=18%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc----Cc-hhhhc------CCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS----DN-NAVVE------YSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~----~~-~~~~~------~aDvI~la   78 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|++. ++++++++.+++.|+.+.+    +. .+.+.      ..|+||-+
T Consensus       186 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~  261 (398)
T 2dph_A          186 GSHVYIAGAGPVGRCAAAGARLLGA---ACVIVG-DQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDA  261 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-ESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            4689999999999988877666664   368888 9999999988888875321    11 12111      47888888


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      +..
T Consensus       262 ~g~  264 (398)
T 2dph_A          262 VGF  264 (398)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            753

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=94.28  E-value=0.2  Score=43.52  Aligned_cols=66  Identities=20%  Similarity=0.265  Sum_probs=50.3

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCCC-------HHHHHH----HHHcC--ceeccCchhhhcCCC
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSN-------LKRRDA----FESIG--VKVLSDNNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~-------~~~~~~----l~~~g--~~~~~~~~~~~~~aD   73 (276)
                      +..||+|||=+  +++.+++..+.+-|.    +|+++ .+.       ++-.+.    +++.|  +.++.++.++++++|
T Consensus       179 ~glkva~vGD~~nnva~Sl~~~~~~lG~----~v~~~-~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aD  253 (365)
T 4amu_A          179 KNKKIVFIGDYKNNVGVSTMIGAAFNGM----HVVMC-GPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDAD  253 (365)
T ss_dssp             TTCEEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-SCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHHcCC----EEEEE-CCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCC
Confidence            56899999988  899999999999998    99987 542       222222    23345  556788999999999


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +|..-+
T Consensus       254 VVytd~  259 (365)
T 4amu_A          254 VIYTDV  259 (365)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1yqga1	111	a.100.1.10 (A:153-263) Pyrroline-5-carboxylate red	2e-38
d2ahra1	104	a.100.1.10 (A:153-256) Pyrroline-5-carboxylate red	9e-37
d1yqga2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	2e-15
d2ahra2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	4e-15
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	2e-07
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	7e-05
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	5e-04
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.002

>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 111

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score =  128 bits (323), Expect = 2e-38
 Identities = 34/107 (31%), Positives = 56/107 (52%)

Query: 170 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 229
           DE+    ITG+SGSGPAY+F  ++AL +  +  G     A  L+  T  GA ++  ++G+
Sbjct: 1   DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGE 60

Query: 230 HPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276
              +L+ +V S GGTT   +    +      +   V A  +RS+E+ 
Sbjct: 61  DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEME 107

>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 104

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  124 bits (312), Expect = 9e-37
 Identities = 47/104 (45%), Positives = 65/104 (62%)

Query: 172 KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 231
           K FD  T L+GS PAYI+L IEALA  GV  G+P+  AL + +QTVL +AS +  S + P
Sbjct: 1   KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSP 60

Query: 232 GQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
               D + SPGGTTIAG+ ELE+ G    + +A+     +++ L
Sbjct: 61  HDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTIDKAKSL 104

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           + F+G G MA ++A G+ K G     RI    +   ++R+  E       S     +   
Sbjct: 3   VYFLGGGNMAAAVAGGLVKQG---GYRI-YIANRGAEKRERLEKELGVETSATLPELHSD 58

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTP 132
           DV++ +VKPQ        +           +     +   SR++   G  R +RVMPNTP
Sbjct: 59  DVLILAVKPQD--MEAACKNIRTNGALVLSVAAGLSVGTLSRYLG--GTRRIVRVMPNTP 114

Query: 133 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 170
             +G   + M      +E D  +  ++  SVG     D
Sbjct: 115 GKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLD 152

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 69.0 bits (167), Expect = 4e-15
 Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +G IG GKMA +I KG+ ++    P  +  +  S  + ++  E + +     +  +++  
Sbjct: 3   IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 58

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHS-RFIRVMPNT 131
           D+V+  +KPQ      + E        +  I   +      R   + G     +R+MPN 
Sbjct: 59  DLVILGIKPQ------LFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNM 112

Query: 132 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADE 171
            + + +++T ++     ++E    +  L  S G  +   E
Sbjct: 113 NAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISE 152

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 14/164 (8%)

Query: 12  ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVE 70
           +L F+G G +     + +     +        + S ++ R      +     +      E
Sbjct: 1   VLNFVGTGTLTRFFLECLKDRYEI------GYILSRSIDRARNLAEVYGGKAATLEKHPE 54

Query: 71  YSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPN 130
            + VV   V  +      I   A       + +   SG      + +    S       +
Sbjct: 55  LNGVVFVIVPDR-----YIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFS 109

Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK--IWRADEK 172
           +     E    +  G    E    ++ K+   +         EK
Sbjct: 110 SLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEK 153

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 7/154 (4%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +GFIG G++A+++A  +   GV                     +  V V   +   V   
Sbjct: 3   VGFIGFGEVAQTLASRLRSRGV-----EVVTSLEGRSPSTIERARTVGVTETSEEDVYSC 57

Query: 73  DVVVFSVKPQVDKAAVIT-EEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNT 131
            VV+ +V P V   A                   P  ++  S  +E  G      +M + 
Sbjct: 58  PVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGF-VDAAIMGSV 116

Query: 132 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 165
                +   + S             G      G+
Sbjct: 117 RRKGADIRIIASGRDAEEFMKLNRYGLNIEVRGR 150

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 55  ESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEA--------FGFCCCRSEIERP 106
           E +G+KV SD+   VE +D+V+  +     +  +I + A            C     +  
Sbjct: 125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFA 184

Query: 107 SGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEA-ATVMSLGGTATEEDGELIGKLFGSVGK 165
              +   R          + +    P  V E    V    G A+EE    + ++      
Sbjct: 185 KIFKDLGR--------EDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARG 236

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 14/160 (8%)

Query: 13  LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
           +GFIG G M + ++K + K+G             N +      + G +  S   A+ E  
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYS-----LVVSDRNPEAIADVIAAGAETASTAKAIAEQC 57

Query: 73  DVVVFSVKPQVDKAAVITEEAFGFCCCRS-------EIERPSGLQRWSRWVEWTGHSRFI 125
           DV++  +        V   E       +            P   +  S  ++  G     
Sbjct: 58  DVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD 117

Query: 126 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 165
             +        +    + +GG   +   +    L  ++  
Sbjct: 118 APVSGGEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAG 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.97
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.96
d1yqga1	111	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.95
d2ahra1	104	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.79
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.79
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.76
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.75
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.69
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.62
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.61
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.59
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.58
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.54
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.52
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.5
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.49
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.42
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.99
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.96
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.75
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.75
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.73
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.71
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.69
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.68
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.67
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.61
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.58
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.57
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.55
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.52
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.49
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.44
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.43
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.42
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.42
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.4
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.39
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.37
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.36
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.35
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.34
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.33
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.32
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	98.3
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.28
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.24
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.22
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.22
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.2
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	98.15
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.13
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.08
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.05
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	98.04
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.02
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.02
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.01
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.01
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.01
d2g5ca1	110	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.0
d2f1ka1	114	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.99
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.98
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.97
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.95
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.95
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.93
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.91
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.88
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.85
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.81
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.8
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.79
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.76
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.72
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.71
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.64
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.55
d2pv7a1	128	Prephenate dehydrogenase TyrA {Haemophilus influen	97.54
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.53
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.48
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.47
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.44
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.42
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.41
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.33
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.32
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.24
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.24
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.2
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.2
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.17
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	97.14
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.04
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.0
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.88
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.86
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.84
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.83
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.82
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.8
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.76
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.66
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.64
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.52
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.51
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.49
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.45
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.45
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.44
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.42
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.38
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.35
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.33
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.21
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.2
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.1
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.06
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.01
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.0
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.98
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.95
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	95.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.83
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.76
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.76
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.74
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.73
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.72
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.71
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.71
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.66
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.63
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.63
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.6
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.56
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.54
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.46
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.33
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.23
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.21
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.18
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.17
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.15
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.13
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.11
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.07
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.01
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.99
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.95
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.94
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.93
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.9
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.88
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.75
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.73
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.68
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.68
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.66
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.63
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.61
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.61
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.61
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.6
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.59
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.58
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.57
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.55
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.53
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.52
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.49
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.49
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.44
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.43
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.43
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.4
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.39
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	94.39
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.38
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.33
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.32
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.27
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.2
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.12
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.97
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.95
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.94
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.93
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.91
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.88
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.88
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.81
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.79
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.77
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.73
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.69
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.53
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.5
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.47
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.37
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.36
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.16
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.15
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.12
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.1
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.07
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.05
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.81
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.81
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.8
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.72
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.65
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.55
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.51
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.49
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.44
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.3
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.29
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.08
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.98
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.96
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	91.95
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.89
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.77
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.73
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.72
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.61
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	91.52
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	91.35
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	91.14
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.1
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.09
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.93
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	90.85
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.74
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.63
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	90.62
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.59
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.51
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.39
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	90.37
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.36
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	90.18
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.11
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	90.02
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.02
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.02
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.93
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	89.91
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.82
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	89.77
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.58
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.52
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.52
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.32
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.29
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.17
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.86
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.49
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	88.47
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.21
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.4
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	87.23
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	86.89
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	86.79
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.55
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	86.49
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	86.44
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	86.22
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.17
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.83
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.82
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.73
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	85.68
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.43
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.3
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	85.08
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	84.96
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	84.79
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.61
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.6
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.59
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	84.59
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.49
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	84.36
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.3
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.22
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.0
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.4
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.4
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.64
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	82.56
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	82.4
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	82.34
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	82.26
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.25
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.9
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.84
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	81.62
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	80.99
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	80.9
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	80.6
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	80.51
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.3
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	80.21
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.18

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.97  E-value=1.6e-30  Score=201.15  Aligned_cols=150  Identities=21%  Similarity=0.392  Sum_probs=135.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||||||+|+||++|+++|.++|+    ++++| +|++++.+++.+ .|+..+.++.+++++||+||+||||+++.++++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~----~i~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~   75 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLK   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCC----eEEEE-cChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhh
Confidence            799999999999999999999998    99999 999999998865 798888899999999999999999999999998


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~  168 (276)
                      ++.     +.+.+++-.+|+ +.+++++.++ +.+++|+|||+|..+++|.+.++.+...+++.++.++++|+.+|++++
T Consensus        76 ~l~-----~~~~iis~~agi-~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~  149 (152)
T d2ahra2          76 PLH-----FKQPIISMAAGI-SLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFD  149 (152)
T ss_dssp             TSC-----CCSCEEECCTTC-CHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEE
T ss_pred             hcc-----cceeEecccccc-cHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence            762     224556666999 9999999987 578999999999999999999998888899999999999999999888


Q ss_pred             cCC
Q 023866          169 ADE  171 (276)
Q Consensus       169 ~~e  171 (276)
                      ++|
T Consensus       150 v~E  152 (152)
T d2ahra2         150 ISE  152 (152)
T ss_dssp             CCG
T ss_pred             ecC
Confidence            765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.96  E-value=4.3e-29  Score=193.23  Aligned_cols=148  Identities=28%  Similarity=0.445  Sum_probs=129.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl   88 (276)
                      |||||||+|+||++|+++|+++| +    +|++| +|++++++.+.+ .|+...++.++ +.++|+||+||||+++.+++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~----~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP~~~~~v~   74 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKPQDMEAAC   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCHHHHHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCC----cEEEE-eCChhHHHHhhhhccccccccccc-ccccceEEEecCHHHHHHhH
Confidence            79999999999999999999987 5    99999 999999999887 68887766655 67899999999999999999


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceE
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~  167 (276)
                      +++..    .++.+++-.+|+ +.+.+++.++ ..+++|+|||+|..+++|++.++.+...++++.+.++++|+.+|+++
T Consensus        75 ~~l~~----~~~~viS~~ag~-~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2          75 KNIRT----NGALVLSVAAGL-SVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             TTCCC----TTCEEEECCTTC-CHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE
T ss_pred             HHHhh----cccEEeecccCC-CHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEE
Confidence            88721    113445666999 9999999997 46899999999999999999999888889999999999999999886


Q ss_pred             Ec
Q 023866          168 RA  169 (276)
Q Consensus       168 ~~  169 (276)
                      ++
T Consensus       150 ~v  151 (152)
T d1yqga2         150 WL  151 (152)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.95  E-value=2.6e-27  Score=171.41  Aligned_cols=107  Identities=32%  Similarity=0.556  Sum_probs=104.4

Q ss_pred             CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 023866          170 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI  249 (276)
Q Consensus       170 ~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l  249 (276)
                      +|+++|.+|+++||||+|++.++++|++++++.|++++++.+++.+++.|++.++.+++.+|.+|++.|+||||+|++||
T Consensus         1 dE~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~L~~~V~SpgGtT~agl   80 (111)
T d1yqga1           1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAV   80 (111)
T ss_dssp             STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHHH
T ss_pred             CHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhcccCcchhHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866          250 HELEKSGFRGILMNAVVAAAKRSRELS  276 (276)
Q Consensus       250 ~~l~~~~~~~~~~~a~~~~~~r~~~~~  276 (276)
                      +.|++++|+..|.+|++++++|++||+
T Consensus        81 ~~l~~~~~~~~i~~ai~aA~~Rs~el~  107 (111)
T d1yqga1          81 EAFRRHRVAEAISEGVCACVRRSQEME  107 (111)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999985

>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.94  E-value=3.6e-26  Score=163.40  Aligned_cols=104  Identities=45%  Similarity=0.729  Sum_probs=101.3

Q ss_pred             CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHH
Q 023866          172 KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE  251 (276)
Q Consensus       172 ~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~  251 (276)
                      +++|.+|+++||||+|++.++++|.+++++.|++++++.+++.+++.|++.++.+++.+|.++++.|+||||+|++||+.
T Consensus         1 K~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~~~~p~~l~~~V~SpgGtT~agl~~   80 (104)
T d2ahra1           1 KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLME   80 (104)
T ss_dssp             GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHHHHH
T ss_pred             CCcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCChhHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHHHHHHhhc
Q 023866          252 LEKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       252 l~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      |++.+|+..|.+|++++++|++||
T Consensus        81 le~~~~~~~i~~a~~aA~~Rs~el  104 (104)
T d2ahra1          81 LERLGLTATVSSAIDKTIDKAKSL  104 (104)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHCChHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999997

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.87  E-value=4.2e-21  Score=149.77  Aligned_cols=141  Identities=11%  Similarity=0.125  Sum_probs=108.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc-eeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~-~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||||||+|+||++||++|.++|+    +|++| ||++++++++++.|+ ....++.+++++||+||+|||++.+++++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~----~V~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~   75 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE   75 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhh
Confidence            799999999999999999999999    99999 999999999888774 344566678999999999999999999999


Q ss_pred             HHhhccccccCCcccCC------CCcccH---HHHHHHcCCCcEEEEecCccccc-----------cCcceEeecCCCCC
Q 023866           90 TEEAFGFCCCRSEIERP------SGLQRW---SRWVEWTGHSRFIRVMPNTPSAV-----------GEAATVMSLGGTAT  149 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~------~g~~~~---~~l~~~l~~~~vv~~~p~~~~~~-----------~~g~~~i~~~~~~~  149 (276)
                      ++        .+.+.++      +++ ..   ..+.+..+  +++..||..+...           ......+++....+
T Consensus        76 ~l--------~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~--~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~  144 (165)
T d2f1ka2          76 KL--------IPHLSPTAIVTDVASV-KTAIAEPASQLWS--GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD  144 (165)
T ss_dssp             HH--------GGGSCTTCEEEECCSC-CHHHHHHHHHHST--TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred             hh--------hhhcccccceeecccc-chHHHHHHHHhhc--ccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence            98        4444433      333 32   33444433  5667777543321           22234566667789


Q ss_pred             HHHHHHHHHHhhhcCceE
Q 023866          150 EEDGELIGKLFGSVGKIW  167 (276)
Q Consensus       150 ~~~~~~v~~ll~~~G~~~  167 (276)
                      +++++.++++|+.+|..+
T Consensus       145 ~~~~~~v~~l~~~lG~~v  162 (165)
T d2f1ka2         145 PEQLACLRSVLEPLGVKI  162 (165)
T ss_dssp             HHHHHHHHHHHGGGTCEE
T ss_pred             HHHHHHHHHHHHHhCCEE
Confidence            999999999999999653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=2.1e-20  Score=145.12  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=105.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl~   89 (276)
                      |||||||+|+||.+||++|+++||    +|++| ||++++.+.+.+.+.....++.+++++||+||+||| +.++++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~   75 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL   75 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCC----eEEEE-eCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHh
Confidence            799999999999999999999999    99999 999999999999999988999999999999999997 557888873


Q ss_pred             HHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecC-ccccccCcc-eEeecCCCCCHHHHHHHHHHh
Q 023866           90 TEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPN-TPSAVGEAA-TVMSLGGTATEEDGELIGKLF  160 (276)
Q Consensus        90 ~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~-~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll  160 (276)
                      ...  ....+++.-++.. +++ +.+   ++.+.+.  +.+++.+... .|.....|. +.++.+   +++.+++++++|
T Consensus        76 ~~~~~~~~~~~g~iiid~-sT~-~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG---~~~~~~~~~~il  150 (161)
T d1vpda2          76 GENGIIEGAKPGTVLIDM-SSI-APLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLM  150 (161)
T ss_dssp             STTCHHHHCCTTCEEEEC-SCC-CHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred             CCcchhhccCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcC---CHHHHHHHHHHH
Confidence            220  0011111112222 444 443   3334433  3555554211 222223343 445544   789999999999


Q ss_pred             hhcCce-EEc
Q 023866          161 GSVGKI-WRA  169 (276)
Q Consensus       161 ~~~G~~-~~~  169 (276)
                      +.+|.. +++
T Consensus       151 ~~~~~~i~~~  160 (161)
T d1vpda2         151 KAMAGSVVHT  160 (161)
T ss_dssp             HTTEEEEEEE
T ss_pred             HHhcCceEEC
Confidence            999965 654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.79  E-value=1.6e-18  Score=135.65  Aligned_cols=145  Identities=14%  Similarity=0.142  Sum_probs=106.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchh-hhcCCCEEEEeeCcccHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNA-VVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~-~~~~aDvI~lav~~~~~~~   86 (276)
                      |+||+|||+|+||++||++|.+.|+  ..+|++| ||+++..+.+++.+..  ...+..+ ...++|+||+|+|++.+.+
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~--~~~I~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~   77 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE   77 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCC--CeEEEEE-ECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhh
Confidence            4579999999999999999999986  2368889 9999999999887752  3344433 3357999999999999999


Q ss_pred             HHHHHhhccccccCCcccCC------CCc-c-cHHHHHHHcCCCcEEEEecCcccc-----------ccCcceEeecCCC
Q 023866           87 AVITEEAFGFCCCRSEIERP------SGL-Q-RWSRWVEWTGHSRFIRVMPNTPSA-----------VGEAATVMSLGGT  147 (276)
Q Consensus        87 vl~~~~~~~~~~~~~~l~~~------~g~-~-~~~~l~~~l~~~~vv~~~p~~~~~-----------~~~g~~~i~~~~~  147 (276)
                      ++.++        .++++++      +++ . ..+.+.+.++ .+++..||....+           +.....++++..+
T Consensus        78 vl~~l--------~~~~~~~~ii~d~~s~k~~~~~~~~~~~~-~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~  148 (171)
T d2g5ca2          78 IAKKL--------SYILSEDATVTDQGSVKGKLVYDLENILG-KRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK  148 (171)
T ss_dssp             HHHHH--------HHHSCTTCEEEECCSCCTHHHHHHHHHHG-GGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred             hhhhh--------hccccccccccccccccHHHHHHHHHhhc-ccccccccccccccccHHHHHHHhhCCCeEEEecCCC
Confidence            99888        3333332      222 0 2355666565 4688888753221           1123456777778


Q ss_pred             CCHHHHHHHHHHhhhcCce
Q 023866          148 ATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus       148 ~~~~~~~~v~~ll~~~G~~  166 (276)
                      .+++.++.++++|+.+|..
T Consensus       149 ~~~~~~~~v~~~~~~lG~~  167 (171)
T d2g5ca2         149 TDKKRLKLVKRVWEDVGGV  167 (171)
T ss_dssp             SCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHcCCE
Confidence            8999999999999999965

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.1e-20  Score=145.60  Aligned_cols=147  Identities=10%  Similarity=-0.004  Sum_probs=94.5

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHHHHh
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEE   92 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~~~   92 (276)
                      |||||+|+||++|+.+|.+.++    .+.+| +|++++++.+.+.+...+.++.++++++|+||+||||+++.+++.++.
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~----~~~v~-~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~   76 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYE----IGYIL-SRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLN   76 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC--------CCCEE-CSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCC----EEEEE-eCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhc
Confidence            7999999999999998866543    34688 999999999998665556678899999999999999999999998872


Q ss_pred             hccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccccc--CcceEeecCCCCCHHHHHHHHHHhhhcCc-eEE
Q 023866           93 AFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGSVGK-IWR  168 (276)
Q Consensus        93 ~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~--~g~~~i~~~~~~~~~~~~~v~~ll~~~G~-~~~  168 (276)
                          .+++.+++..++. +.+.++.+.. ..+.++.+++.+....  .+......   .+++.++.++++|+.+|. +++
T Consensus        77 ----~~~~ivi~~s~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gd~~~~~~~~~l~~~lG~~~~~  148 (153)
T d2i76a2          77 ----LGDAVLVHCSGFL-SSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLE---GDERGLPIVKKIAEEISGKYFV  148 (153)
T ss_dssp             ----CSSCCEEECCSSS-CGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEEC---CCTTTHHHHHHHHHHHCSCEEE
T ss_pred             ----ccceeeeecccch-hhhhhhhhccccceeeeecccccchhhhccCcEEEEe---CCHHHHHHHHHHHHHHCCcEEE
Confidence                1113334443555 6655544322 1111122222221111  12222222   367899999999999994 688


Q ss_pred             cCCC
Q 023866          169 ADEK  172 (276)
Q Consensus       169 ~~e~  172 (276)
                      ++++
T Consensus       149 i~~e  152 (153)
T d2i76a2         149 IPSE  152 (153)
T ss_dssp             CCGG
T ss_pred             eCCC
Confidence            8765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.1e-18  Score=132.47  Aligned_cols=147  Identities=16%  Similarity=0.167  Sum_probs=101.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVIT   90 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~   90 (276)
                      |||||||+|+||++|+++|+++||    +|++| ++++++...+...++.+..++.+++++||+||+|||+++..+++.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~----~v~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~   75 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARR   75 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCC----eEEEE-cCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHh
Confidence            799999999999999999999999    99999 8887777666665665667889999999999999999998888877


Q ss_pred             HhhccccccCCcccCCCCc--ccHHHHHHHcCCCcEEEEec-CccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-
Q 023866           91 EEAFGFCCCRSEIERPSGL--QRWSRWVEWTGHSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-  166 (276)
Q Consensus        91 ~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~~~vv~~~p-~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-  166 (276)
                      ... .+  ...++. .+.+  .....+++.+++..++.+.. ..+...+.+...++.++  +.+.++    .|+.+|.. 
T Consensus        76 ~~~-~~--~~~~id-~st~~p~~~~~l~~~~~~~~~~d~~v~g~~~~~~~~~~~~~~G~--~~~~~~----~l~~~g~~i  145 (152)
T d1i36a2          76 AGR-HV--RGIYVD-INNISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR--DAEEFM----KLNRYGLNI  145 (152)
T ss_dssp             HHT-TC--CSEEEE-CSCCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST--THHHHH----GGGGGTCEE
T ss_pred             hcc-cC--Cceeec-cCcCCHHHHHHHHHHHhccCCCcccccCCcccccCCcEEEEECC--CHHHHH----HHHHcCCee
Confidence            621 11  011221 1333  02466777777555554432 22333355566666554  333333    37889965 


Q ss_pred             EEcCCC
Q 023866          167 WRADEK  172 (276)
Q Consensus       167 ~~~~e~  172 (276)
                      .+++++
T Consensus       146 ~~~G~~  151 (152)
T d1i36a2         146 EVRGRE  151 (152)
T ss_dssp             EECSSS
T ss_pred             eEcCCC
Confidence            677764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=2.3e-18  Score=133.58  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=105.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV   88 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl   88 (276)
                      |+||||||+|.||++||++|.++||    +|++| ||++++.+.+...+.....++.+++..+|+|++|+++. .+++++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~   75 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLY   75 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC----eEEEE-ECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHH
Confidence            5789999999999999999999999    99999 99999999999999888888999999999999999865 566676


Q ss_pred             HHHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEe-cCccccccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866           89 ITEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELIGKL  159 (276)
Q Consensus        89 ~~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~-p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l  159 (276)
                      ....  ...+.+++-++.. +.+ +++   .+.+.+.  +.+++.+. -..|.....|. +.++.+   +++.+++++++
T Consensus        76 ~~~~~~~~~l~~g~iiid~-st~-~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG---~~~~~~~~~~i  150 (162)
T d3cuma2          76 LDDDGLLAHIAPGTLVLEC-STI-APTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPL  150 (162)
T ss_dssp             HSTTCHHHHSCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred             hccccccccCCCCCEEEEC-CCC-CHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecC---CHHHHHHHHHH
Confidence            4421  0011111122222 444 443   3444443  34555431 11233333454 444544   78999999999


Q ss_pred             hhhcCce-EEc
Q 023866          160 FGSVGKI-WRA  169 (276)
Q Consensus       160 l~~~G~~-~~~  169 (276)
                      |+.+|.. +++
T Consensus       151 l~~~~~~v~~~  161 (162)
T d3cuma2         151 FEAMGRNIFHA  161 (162)
T ss_dssp             HHHHEEEEEEE
T ss_pred             HHHHcCccEEC
Confidence            9999964 654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.69  E-value=2.1e-17  Score=129.83  Aligned_cols=147  Identities=12%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--------eeccCchhhhcCCCEEEEeeCc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--------KVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--------~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +.+|||||+|+||.+||++|+++||    +|++| ||++++.+.+.+.+.        ....+..+.+..+|++|+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~   76 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA   76 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc
Confidence            3589999999999999999999999    99999 999999999987533        2234455678899999999976


Q ss_pred             c-cHHHHHHHHhhccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEE-ecCccccccCcceEeecCCCCCHHHHH
Q 023866           82 Q-VDKAAVITEEAFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE  154 (276)
Q Consensus        82 ~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~  154 (276)
                      . .+.++..++.. .++++.-++.. +.+ +++   ++.+.+.  +..++.+ +...|.....|.+.+..+   +++.++
T Consensus        77 ~~~v~~v~~~l~~-~~~~g~iiid~-sT~-~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG---~~~~~~  150 (176)
T d2pgda2          77 GQAVDNFIEKLVP-LLDIGDIIIDG-GNS-EYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGG---NKEAWP  150 (176)
T ss_dssp             THHHHHHHHHHHH-HCCTTCEEEEC-SCC-CHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CTTTHH
T ss_pred             hHHHHHHHHHHHh-ccccCcEEEec-Ccc-hhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCC---CHHHHH
Confidence            4 67788777621 11111222222 333 332   3333332  3455543 122222223455555544   678899


Q ss_pred             HHHHHhhhcCceE
Q 023866          155 LIGKLFGSVGKIW  167 (276)
Q Consensus       155 ~v~~ll~~~G~~~  167 (276)
                      +++++|+.++..+
T Consensus       151 ~~~~il~~~~~kv  163 (176)
T d2pgda2         151 HIKAIFQGIAAKV  163 (176)
T ss_dssp             HHHHHHHHHSCBC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999999654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-14  Score=114.50  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=115.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c------------------C
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------------G   58 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------------g   58 (276)
                      |..+||+|||+|.||+.+|..+..+|+    +|++| |++++.++...+           .                  .
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~   76 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST   76 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence            456899999999999999999999999    99999 999986553321           1                  1


Q ss_pred             ceeccCchhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCcccc
Q 023866           59 VKVLSDNNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSA  134 (276)
Q Consensus        59 ~~~~~~~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~  134 (276)
                      +..+.+..+++.+||+|+-|++-+ . =.+++.++.  .+.+...++ +..+++ ++..+.+.+.. .+++.+|+..|..
T Consensus        77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~--~~~~~~~ilasnTS~l-~i~~la~~~~~p~r~ig~HffnP~~  153 (192)
T d1f0ya2          77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLD--KFAAEHTIFASNTSSL-QITSIANATTRQDRFAGLHFFNPVP  153 (192)
T ss_dssp             EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHT--TTSCTTCEEEECCSSS-CHHHHHTTSSCGGGEEEEEECSSTT
T ss_pred             ccccchhHhhhcccceehhhcccchhHHHHHHHHHh--hhcccCceeeccCccc-ccchhhhhccCHhHEEeeccccccC
Confidence            334556677889999999999854 3 458888883  222212233 333777 88899887763 6899999877776


Q ss_pred             ccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866          135 VGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADE  171 (276)
Q Consensus       135 ~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e  171 (276)
                      ...-+. +++++.++++.++.+..+++.+|+. +.+.+
T Consensus       154 ~~~lVE-Iv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         154 VMKLVE-VIKTPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             TCCEEE-EECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cccEEE-EcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            544343 5678889999999999999999986 66543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.61  E-value=1.6e-15  Score=120.07  Aligned_cols=152  Identities=12%  Similarity=0.095  Sum_probs=108.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCC
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYS   72 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~a   72 (276)
                      .|.|.||+|||+|.||+++|..|.+.|+    +|++| +|+++..+.+.+.              ++.++.+..++++++
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~----~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~a   78 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA   78 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcCC----eEEEE-EecHHHHHHHhhcccccccccccccccccccchhhhhccCCC
Confidence            4677889999999999999999999999    99999 9999999888641              244567778889999


Q ss_pred             CEEEEeeCcccHHHHHHHHhhc----cccccCCcccCCCCcc-----c-HHHHHHHcCCCcE-EEEecCccccccCcc-e
Q 023866           73 DVVVFSVKPQVDKAAVITEEAF----GFCCCRSEIERPSGLQ-----R-WSRWVEWTGHSRF-IRVMPNTPSAVGEAA-T  140 (276)
Q Consensus        73 DvI~lav~~~~~~~vl~~~~~~----~~~~~~~~l~~~~g~~-----~-~~~l~~~l~~~~v-v~~~p~~~~~~~~g~-~  140 (276)
                      |+||++||.+.++++++++...    -..+..+++....|+.     . .+.+.+.++..++ +-.-|+++.++.+|. +
T Consensus        79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt  158 (189)
T d1n1ea2          79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFT  158 (189)
T ss_dssp             SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCE
T ss_pred             CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCc
Confidence            9999999999999999876200    0011133444334441     1 2445556664333 445688888876664 3


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVG  164 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G  164 (276)
                      .++.+ +.+.+..+.++++|+.-.
T Consensus       159 ~~viA-s~~~~~a~~i~~lfst~~  181 (189)
T d1n1ea2         159 CVSIA-SADINVARRLQRIMSTGD  181 (189)
T ss_dssp             EEEEE-CSSHHHHHHHHHHHSCTT
T ss_pred             EEEEE-eCCHHHHHHHHHHhCCCC
Confidence            33322 237888899999998644

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=6.9e-15  Score=112.37  Aligned_cols=129  Identities=15%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +++||+||| +|+||++|+++|.++||    +|++| ||+++..             ..+.+..+|++++++|+..+..+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~----~V~~~-d~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~v   69 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWAV-------------AESILANADVVIVSVPINLTLET   69 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGGG-------------HHHHHTTCSEEEECSCGGGHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC----CcEec-ccccccc-------------cchhhhhccccccccchhhheee
Confidence            578999999 99999999999999999    99999 9986543             23456889999999999999999


Q ss_pred             HHHHhhccccccCCcccCC------CCcccH---HHHHHHcCCCcEEEEecCcccccc--CcceE-eecCCCCCHHHHHH
Q 023866           88 VITEEAFGFCCCRSEIERP------SGLQRW---SRWVEWTGHSRFIRVMPNTPSAVG--EAATV-MSLGGTATEEDGEL  155 (276)
Q Consensus        88 l~~~~~~~~~~~~~~l~~~------~g~~~~---~~l~~~l~~~~vv~~~p~~~~~~~--~g~~~-i~~~~~~~~~~~~~  155 (276)
                      +.++        .+.+..+      +++ ..   +.+.+.++ .+++..||......+  .+... ++.+  .+++.+++
T Consensus        70 ~~~~--------~~~~~~~~iiiD~~Sv-k~~~~~~~~~~~~-~~~v~~hP~~Gp~~~~~~g~~~v~~~g--~~~~~~~~  137 (152)
T d2pv7a2          70 IERL--------KPYLTENMLLADLTSV-KREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDG--RFPERYEW  137 (152)
T ss_dssp             HHHH--------GGGCCTTSEEEECCSC-CHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEE--ECGGGTHH
T ss_pred             eecc--------cccccCCceEEEeccc-CHHHHHHHHHHcc-CCEEEecccCCCcccccCCcEEEEecC--CCHHHHHH
Confidence            9888        4444332      444 43   44445444 467888887544332  23333 3333  36778999


Q ss_pred             HHHHhhhcCceE
Q 023866          156 IGKLFGSVGKIW  167 (276)
Q Consensus       156 v~~ll~~~G~~~  167 (276)
                      +.++|+.+|..+
T Consensus       138 ~~~ll~~~Ga~v  149 (152)
T d2pv7a2         138 LLEQIQIWGAKI  149 (152)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             HHHHHHHhCCEE
Confidence            999999999753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=4.6e-15  Score=116.38  Aligned_cols=146  Identities=13%  Similarity=0.189  Sum_probs=93.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--------eccCc---hhhhcCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--------VLSDN---NAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--------~~~~~---~~~~~~aDvI~la   78 (276)
                      .|||||||+|+||.+|+++|+++||    +|++| ||++++.+.+.+.+..        ...+.   ...+..++.++++
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~----~V~~~-dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL   75 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence            3799999999999999999999999    99999 9999999999874432        11121   2234678888888


Q ss_pred             eCcc-cHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEE-ecCccccccCcceEeecCCCCCHH
Q 023866           79 VKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEE  151 (276)
Q Consensus        79 v~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~-~p~~~~~~~~g~~~i~~~~~~~~~  151 (276)
                      +++. .+..++..+. ..+.++..++.. +.+ ..   ..+.+.+.  +..++.+ +...+.....|.+.++.+   +++
T Consensus        76 ~~~~~~~~~~~~~~~-~~~~~~~iii~~-st~-~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG---~~~  149 (178)
T d1pgja2          76 VQAGAATDSTIEQLK-KVFEKGDILVDT-GNA-HFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGG---TLS  149 (178)
T ss_dssp             CCCSHHHHHHHHHHH-HHCCTTCEEEEC-CCC-CHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEE---CHH
T ss_pred             ecCcchhhhhhhhhh-hhccccceeccc-Ccc-chhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeC---CHH
Confidence            8765 4666766652 111111122222 333 33   23444442  3445543 222233333455555544   789


Q ss_pred             HHHHHHHHhhhcCce
Q 023866          152 DGELIGKLFGSVGKI  166 (276)
Q Consensus       152 ~~~~v~~ll~~~G~~  166 (276)
                      .+++++++|+.++..
T Consensus       150 ~~~~v~pil~~~~~~  164 (178)
T d1pgja2         150 VWEEIRPIVEAAAAK  164 (178)
T ss_dssp             HHHHHHHHHHHHSCB
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999965

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=2.1e-14  Score=112.76  Aligned_cols=138  Identities=14%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHHHHHHc------C-------ceeccCchhhhcCCCEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESI------G-------VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~------g-------~~~~~~~~~~~~~aDvI   75 (276)
                      |||+|||+|.||+++|..|.++|+    +|++| .|+  ++..+.+.+.      +       +..+++..++++++|+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~----~V~l~-~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~I   75 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV   75 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchh
Confidence            899999999999999999999999    99999 884  4556666541      1       22356677889999999


Q ss_pred             EEeeCcccHHHHHHHHhhccccccCCcccCC------CCcc-------c-HHHHHHHcCC--Cc-EEEEecCccccccCc
Q 023866           76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERP------SGLQ-------R-WSRWVEWTGH--SR-FIRVMPNTPSAVGEA  138 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~-------~-~~~l~~~l~~--~~-vv~~~p~~~~~~~~g  138 (276)
                      |++||++.+++++.++        .+++...      .|+.       . .+.+.+..+.  .+ .+-.-|+++.++..+
T Consensus        76 i~avps~~~~~~~~~l--------~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~  147 (180)
T d1txga2          76 LLGVSTDGVLPVMSRI--------LPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKR  147 (180)
T ss_dssp             EECSCGGGHHHHHHHH--------TTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTT
T ss_pred             hcccchhhhHHHHHhh--------ccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcC
Confidence            9999999999999998        4444332      3321       1 2444444442  22 334458888777655


Q ss_pred             c-eEeecCCCCCHHHHHHHHHHhhh
Q 023866          139 A-TVMSLGGTATEEDGELIGKLFGS  162 (276)
Q Consensus       139 ~-~~i~~~~~~~~~~~~~v~~ll~~  162 (276)
                      . +.++.+ +.+.+..+.++++|+.
T Consensus       148 ~pt~~via-s~~~~~a~~i~~~f~~  171 (180)
T d1txga2         148 MPTTVVFS-SPSESSANKMKEIFET  171 (180)
T ss_dssp             CCEEEEEE-CSCHHHHHHHHHHHCB
T ss_pred             CCcEEEEE-cCCHHHHHHHHHHHCC
Confidence            4 222222 2377888899999975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.52  E-value=1.9e-13  Score=107.72  Aligned_cols=152  Identities=16%  Similarity=0.085  Sum_probs=111.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD   64 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~   64 (276)
                      +.+||+|||+|.||+.+|..++.+|+    +|++| |++++.+++..+           .+             +....+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS   77 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc
Confidence            56789999999999999999999999    99999 999987654321           11             223333


Q ss_pred             chhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcce
Q 023866           65 NNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAAT  140 (276)
Q Consensus        65 ~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~  140 (276)
                      . +.+.+||+||-|++-+ . -.+++.++.  ...+...++ +..+++ ++..+.+.+.+ .+++..|+-.|......+.
T Consensus        78 ~-~~~~~adlViEav~E~l~~K~~lf~~l~--~~~~~~~IiaSnTS~l-~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVE  153 (186)
T d1wdka3          78 Y-GDFGNVDLVVEAVVENPKVKQAVLAEVE--NHVREDAILASNTSTI-SISLLAKALKRPENFVGMHFFNPVHMMPLVE  153 (186)
T ss_dssp             S-TTGGGCSEEEECCCSCHHHHHHHHHHHH--TTSCTTCEEEECCSSS-CHHHHGGGCSCGGGEEEEECCSSTTTCCEEE
T ss_pred             c-ccccccceeeeeecchHHHHHHHHHHHH--hhcCCCeeEEeccccc-cHHHHHHhccCchheEeeccccCcccCCeEE
Confidence            3 4578999999999854 3 457888883  121112223 444777 88999887763 6899999877776555444


Q ss_pred             EeecCCCCCHHHHHHHHHHhhhcCce-EEcC
Q 023866          141 VMSLGGTATEEDGELIGKLFGSVGKI-WRAD  170 (276)
Q Consensus       141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~  170 (276)
                       ++.++.++++.++.+..+++.+|+. +++.
T Consensus       154 -iv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  183 (186)
T d1wdka3         154 -VIRGEKSSDLAVATTVAYAKKMGKNPIVVN  183 (186)
T ss_dssp             -EEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             -ECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence             4567888999999999999999986 5554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.50  E-value=5.2e-14  Score=110.50  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=68.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc---------------eeccCchhhhcCCCE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---------------KVLSDNNAVVEYSDV   74 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~aDv   74 (276)
                      .+||+|||+|+||.++|..|.++||    +|++| +|++++.+.+++.+.               ..+++..++++++|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~   75 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADV   75 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCE
Confidence            3799999999999999999999999    99999 999999998876331               234567888999999


Q ss_pred             EEEeeCcccHHHHHHHH
Q 023866           75 VVFSVKPQVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~~vl~~~   91 (276)
                      ||++||++.++++++++
T Consensus        76 iii~v~~~~~~~~~~~i   92 (184)
T d1bg6a2          76 ILIVVPAIHHASIAANI   92 (184)
T ss_dssp             EEECSCGGGHHHHHHHH
T ss_pred             EEEEEchhHHHHHHHHh
Confidence            99999999999999999

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=4.6e-14  Score=108.21  Aligned_cols=146  Identities=14%  Similarity=0.041  Sum_probs=90.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVIT   90 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~~   90 (276)
                      ||||||+|+||.+|+++|+++|+    . ++| +|++++.+.+.+.+.... +..+.+.++|++|++++.. .+..+...
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~----~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~   74 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP----T-LVW-NRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVAEA   74 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC----E-EEE-CSSTHHHHHHHHHHCCEE-CCGGGGGGCSEEEECCSSHHHHHHHHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC----E-EEE-eCCHHHHHHHHHHcCCcc-cccccccceeEEEecccchhhhhhhhcc
Confidence            79999999999999999999886    4 468 888888777766433333 3456677899999999754 56666666


Q ss_pred             HhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEE-ecCccccccCcc-eEeecCCCCCHHHHHHHHHHhhhc
Q 023866           91 EEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFGSV  163 (276)
Q Consensus        91 ~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~  163 (276)
                      +.. ...++..++.. +.+ +.   .++.+.+.  +.+++.+ +...|....+|. +.++.+   +++.++.++++|+ +
T Consensus        75 l~~-~~~~~~~iid~-sT~-~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG---~~~~~~~~~p~L~-~  147 (156)
T d2cvza2          75 LYP-YLREGTYWVDA-TSG-EPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFLA-Y  147 (156)
T ss_dssp             HTT-TCCTTEEEEEC-SCC-CHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHGGGCT-T
T ss_pred             ccc-ccccccccccc-ccC-CHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC---CHHHHHHHHHHHH-h
Confidence            521 11111111111 444 44   34444443  2344433 112222223444 445544   8999999999995 7


Q ss_pred             Cc-eEEcCC
Q 023866          164 GK-IWRADE  171 (276)
Q Consensus       164 G~-~~~~~e  171 (276)
                      +. .++++|
T Consensus       148 ~~~v~~~GP  156 (156)
T d2cvza2         148 AKKVVHVGP  156 (156)
T ss_dssp             EEEEEEEES
T ss_pred             cCcCEEeCc
Confidence            75 477654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.7e-14  Score=108.11  Aligned_cols=147  Identities=9%  Similarity=0.113  Sum_probs=93.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-------ceeccCchhhhcCCCEEEEeeCccc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-------VKVLSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      |||+|||+|.||+.++..|.++|+    +|+++ +|++++.+.+...+       .....+..+....+|+||++||+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~   75 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ   75 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC----ceEEE-EcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc
Confidence            899999999999999999999999    99999 99987654333211       1233455677889999999999999


Q ss_pred             HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCcc--------ccccCcceEeecCCCCCHHHHHH
Q 023866           84 DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTP--------SAVGEAATVMSLGGTATEEDGEL  155 (276)
Q Consensus        84 ~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~--------~~~~~g~~~i~~~~~~~~~~~~~  155 (276)
                      ++++++.+.. -+.+...++...+|+...+.+++.  ..+++...+...        ...+.|.+.+.... ...+..+.
T Consensus        76 ~~~~~~~l~~-~~~~~~~Iv~~qNG~~~~~~l~~~--~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~-~~~~~~~~  151 (167)
T d1ks9a2          76 VSDAVKSLAS-TLPVTTPILLIHNGMGTIEELQNI--QQPLLMGTTTHAARRDGNVIIHVANGITHIGPAR-QQDGDYSY  151 (167)
T ss_dssp             HHHHHHHHHT-TSCTTSCEEEECSSSCTTGGGTTC--CSCEEEEEECCEEEEETTEEEEEECCCEEEEESS-GGGTTCTH
T ss_pred             hHHHHHhhcc-ccCcccEEeeccCcccHHHHHhhc--CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCC-CcchhHHH
Confidence            9999998821 011112223323777333444442  234544333222        22345555554332 23445677


Q ss_pred             HHHHhhh-cCce
Q 023866          156 IGKLFGS-VGKI  166 (276)
Q Consensus       156 v~~ll~~-~G~~  166 (276)
                      +.++|+. +...
T Consensus       152 l~~~l~~a~~~~  163 (167)
T d1ks9a2         152 LADILQTVLPDV  163 (167)
T ss_dssp             HHHHHHTTSSCE
T ss_pred             HHHHHHhhCCCC
Confidence            8888854 4444

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.99  E-value=1.2e-10  Score=94.20  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=96.8

Q ss_pred             CCeEEEEcccH--HHHHHHH------HHHhCCCCCCCeEEEEeCCCHHHH-HHHH----------------H--------
Q 023866           10 SFILGFIGAGK--MAESIAK------GVAKSGVLPPDRICTAVHSNLKRR-DAFE----------------S--------   56 (276)
Q Consensus        10 ~~kIgiIG~G~--mG~~la~------~l~~~g~~~~~~V~v~~~r~~~~~-~~l~----------------~--------   56 (276)
                      ..+++++|+|.  ||..+..      .|.+.|+    .|++. |-++++. +.+.                +        
T Consensus        40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~----~v~~~-d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~  114 (242)
T d2b0ja2          40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEPG----LVVID-EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKP  114 (242)
T ss_dssp             CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSE----EEECC-CSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCT
T ss_pred             eeeeeeeeecHHhhhhchhhhhccchhhhhcCC----eEEEE-eCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCC
Confidence            45688888887  7766766      5678887    78877 8887653 2211                0        


Q ss_pred             ------------cCceeccCchhhhcCCCEEEEeeCc-ccHHHHHHHHhhccccccCCcccCC------CCcccH---HH
Q 023866           57 ------------IGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAAVITEEAFGFCCCRSEIERP------SGLQRW---SR  114 (276)
Q Consensus        57 ------------~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~---~~  114 (276)
                                  .|+.+++|+.|+++++|+||+|||. +.+.+++.++        .+.+.++      +++ +.   ..
T Consensus       115 ~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I--------~~~l~~g~Iiid~STi-~~~~~~~  185 (242)
T d2b0ja2         115 PKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKF--------ADAIPEGAIVTHACTI-PTTKFAK  185 (242)
T ss_dssp             TTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHH--------GGGSCTTCEEEECSSS-CHHHHHH
T ss_pred             ccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHH--------HhhCCCCcEEEecCCC-cHHHHHH
Confidence                        2466778899999999999999975 5678999988        4444433      444 44   34


Q ss_pred             HHHHcC--CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866          115 WVEWTG--HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRA  169 (276)
Q Consensus       115 l~~~l~--~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~  169 (276)
                      +.+.+.  +.+++..||..+.. ..|.+.+.. ...+++.++.+.++|+.+|+. +++
T Consensus       186 l~e~l~~kgi~vi~~hp~a~pe-~~g~~li~~-~~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         186 IFKDLGREDLNITSYHPGCVPE-MKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             HHHHTTCTTSEEEECBCSSCTT-TCCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             HHHhcccCCCEEECCCccCcCc-cccceEEec-CCCCHHHHHHHHHHHHHHCCCeEeC
Confidence            555554  34566666654332 233333332 246899999999999999975 543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.96  E-value=6.8e-10  Score=88.08  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------------CceeccCchhhhc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------------GVKVLSDNNAVVE   70 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~   70 (276)
                      |||+|||+|.+|.++|..|.++||    +|++| |.++++.+.+.+.                    ....+++..+++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~----~V~g~-D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~   75 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC----cEEEE-eCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence            799999999999999999999999    99999 9999998877531                    2345667788899


Q ss_pred             CCCEEEEeeCc
Q 023866           71 YSDVVVFSVKP   81 (276)
Q Consensus        71 ~aDvI~lav~~   81 (276)
                      +||++|+|||.
T Consensus        76 ~~d~i~i~VpT   86 (202)
T d1mv8a2          76 DSDVSFICVGT   86 (202)
T ss_dssp             TCSEEEECCCC
T ss_pred             hCCEEEEecCc
Confidence            99999999963

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=5.3e-09  Score=79.94  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=70.9

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      ++||||||+|.||.. ....+.+. ++    ++. ++ |+++++++.+.+ .++...++.++++++.|+|++|+|+....
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~----~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~   75 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF   75 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCc----EEEEEE-echhHhhhhhhhcccccccccchhhhhhcccccccccchhcc
Confidence            479999999999986 45556543 33    655 55 999999888766 78888888888889999999999998766


Q ss_pred             HHHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           86 AAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      ++.....+.|    ++++..+ -+. +.++..++.
T Consensus        76 ~~~~~al~~g----k~V~~EKPla~-~~~e~~~l~  105 (164)
T d1tlta1          76 DVVSTLLNAG----VHVCVDKPLAE-NLRDAERLV  105 (164)
T ss_dssp             HHHHHHHHTT----CEEEEESSSCS-SHHHHHHHH
T ss_pred             cccccccccc----ceeeccccccC-CHHHHHHHH
Confidence            6655543222    5555443 344 555555543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.75  E-value=1.2e-08  Score=77.41  Aligned_cols=70  Identities=23%  Similarity=0.340  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~   81 (276)
                      .+.++|.|||+|.||..++.+|.+.|.   .+++++ +|+.++++.+.+ .|...  ..+..+.+.++|+||.|+..
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~---~~i~v~-nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCC---cEEEEE-cCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC
Confidence            357899999999999999999999886   379999 999999988876 56543  34566778899999999963

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=3.8e-08  Score=76.31  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhc--CCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDvI~lav~~   81 (276)
                      |+++||||||+|.+|.. .+..+.+.+.  .-+|. ++ |+++++++.+.+ .+. ..+++.+++++  +.|+|++|+|+
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~--~~~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~   77 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSH--LFEITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   77 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTT--TEEEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCC--CeEEEEEE-eccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence            56789999999999986 4666665331  11565 56 999999988776 554 46778888775  57999999999


Q ss_pred             ccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHHH
Q 023866           82 QVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEW  118 (276)
Q Consensus        82 ~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~  118 (276)
                      ....+++....+.|    ++++..+ -+. +.+++.++
T Consensus        78 ~~h~~~~~~al~~g----k~V~~EKPl~~-~~~e~~~l  110 (181)
T d1zh8a1          78 ELNLPFIEKALRKG----VHVICEKPIST-DVETGKKV  110 (181)
T ss_dssp             GGHHHHHHHHHHTT----CEEEEESSSSS-SHHHHHHH
T ss_pred             cccccccccccccc----hhhhcCCCCcC-CHHHHHHH
Confidence            87777766653323    5555443 444 56665554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.73  E-value=3.5e-08  Score=74.44  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      +.++|+|||.|.=|.+-|.+|+++|+    +|++- -|.. ...+..++.|..+. +..|+++++|+|.+.+|+..-.++
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~----~V~VG-Lr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q~~v   88 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL   88 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCC----CEEEE-cCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHHHHH
Confidence            46899999999999999999999999    99988 6654 34566667898874 688999999999999999888888


Q ss_pred             HH-HHhhccccccCCcccCCC
Q 023866           88 VI-TEEAFGFCCCRSEIERPS  107 (276)
Q Consensus        88 l~-~~~~~~~~~~~~~l~~~~  107 (276)
                      .+ ++        .|.+++++
T Consensus        89 y~~~I--------~p~lk~g~  101 (182)
T d1np3a2          89 YKEEI--------EPNLKKGA  101 (182)
T ss_dssp             HHHHT--------GGGCCTTC
T ss_pred             HHHhh--------hhhcCCCc
Confidence            86 56        77777653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.71  E-value=5.8e-08  Score=74.15  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=69.6

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce-eccCchhhhc-CCCEEEEeeCcccHH
Q 023866           10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVE-YSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~-~aDvI~lav~~~~~~   85 (276)
                      .+||||||+|.||.. ....+.+.+.   .++.++ ++++++.+.+.+ .++. .+++.+++++ +.|+|++|+|+....
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~~~---~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~   76 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQWPD---IELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS   76 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTT---EEEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhCCC---cEEEEE-ECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccc
Confidence            379999999999976 4555554432   267777 999999988877 5653 5566677665 679999999998777


Q ss_pred             HHHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           86 AAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        86 ~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      +++....+.|    .+++..+ -+. +.++..++.
T Consensus        77 ~~~~~al~~g----k~V~~EKP~~~-~~~e~~~l~  106 (167)
T d1xeaa1          77 TLAAFFLHLG----IPTFVDKPLAA-SAQECENLY  106 (167)
T ss_dssp             HHHHHHHHTT----CCEEEESCSCS-SHHHHHHHH
T ss_pred             cccccccccc----cccccCCCCcC-CHHHHHHHH
Confidence            6666553323    5555443 444 555555543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=6.5e-08  Score=75.07  Aligned_cols=100  Identities=13%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCCHHHHHHHHH-cC----ceeccCchhhhc--CCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~-v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDvI~lav~   80 (276)
                      ++||||||+|.||...+..+... ++    +|. ++ |+++++++.+.+ .+    ..++++.+++++  +.|+|++|+|
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~----~i~ai~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp   75 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNA----TISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLP   75 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCC----EEEEEE-eCCccccccchhccccccceeecCcHHHhhhccccceeeeccc
Confidence            36999999999999999988765 33    666 55 999999888766 44    456778888764  5799999999


Q ss_pred             cccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           81 PQVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        81 ~~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      +....+.+....+.|    .+++-.+ .+. +.+++.++.
T Consensus        76 ~~~h~~~~~~~l~~g----~~v~~EKP~~~-~~~e~~~l~  110 (184)
T d1ydwa1          76 TSLHVEWAIKAAEKG----KHILLEKPVAM-NVTEFDKIV  110 (184)
T ss_dssp             GGGHHHHHHHHHTTT----CEEEECSSCSS-SHHHHHHHH
T ss_pred             chhhcchhhhhhhcc----ceeeccccccc-CHHHHHHHH
Confidence            987666665553222    5555443 344 666655543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.68  E-value=2.3e-08  Score=76.86  Aligned_cols=77  Identities=13%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCc-eec-------cCchhhhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV-KVL-------SDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~-~~~-------~~~~~~~~~aDvI~lav~   80 (276)
                      .++|.|||+|.||..+|+.|.+.||    +|++| ||+.++++.+.+ .+. ...       ....+.+...|+++.++|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~----~V~v~-dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   76 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence            4799999999999999999999999    99999 999999999887 221 111       122355778899999988


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      ......+....
T Consensus        77 ~~~~~~~~~~~   87 (182)
T d1e5qa1          77 YTFHATVIKSA   87 (182)
T ss_dssp             GGGHHHHHHHH
T ss_pred             chhhhHHHHHH
Confidence            77655554443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.67  E-value=1.1e-07  Score=76.01  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=70.3

Q ss_pred             CCCCC-CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce-----eccCchhhhc--CCC
Q 023866            4 FPIPA-ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-----VLSDNNAVVE--YSD   73 (276)
Q Consensus         4 ~~~~~-~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~aD   73 (276)
                      .|-++ ...||||||+|.||.. ++..+.+.   +.-+|..++||++++++.+.+ .|+.     .++|..++++  +.|
T Consensus        26 ~~~~~~~~iriaiIG~G~~~~~~~~~~~~~~---~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD  102 (221)
T d1h6da1          26 RPMPEDRRFGYAIVGLGKYALNQILPGFAGC---QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKID  102 (221)
T ss_dssp             SCCCCCCCEEEEEECCSHHHHHTHHHHTTTC---SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCC
T ss_pred             CCCCCCCCEEEEEEcCcHHHHHHHHHHHHhC---CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccce
Confidence            34443 3469999999999975 55555443   122666333999999988776 5553     4567788775  589


Q ss_pred             EEEEeeCcccHHHHHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      +|++|+|++...++.....+.|    ++++..+ -+. +.+++.++.
T Consensus       103 ~V~I~tp~~~H~~~~~~al~~g----k~v~~EKPla~-~~~e~~~l~  144 (221)
T d1h6da1         103 AVYIILPNSLHAEFAIRAFKAG----KHVMCEKPMAT-SVADCQRMI  144 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTT----CEEEECSSCCS-SHHHHHHHH
T ss_pred             eeeeccchhhhhhHHHHhhhcc----hhhhcCCCccC-CHHHHHHHH
Confidence            9999999987666655543223    5666554 444 566555543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.58  E-value=4.8e-08  Score=76.63  Aligned_cols=65  Identities=12%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc------------------CceeccCchhhhcCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------------------GVKVLSDNNAVVEYS   72 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~~~a   72 (276)
                      |||+|||+|.+|.++|..| +.|+    +|+++ |.++++.+.++..                  ......+......++
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~----~V~g~-Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~   74 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA   74 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred             CEEEEECCChhHHHHHHHH-HCCC----cEEEE-ECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcc
Confidence            7999999999999999866 5699    99999 9999998877631                  122333445556789


Q ss_pred             CEEEEeeCc
Q 023866           73 DVVVFSVKP   81 (276)
Q Consensus        73 DvI~lav~~   81 (276)
                      |+|++|||.
T Consensus        75 ~ii~v~vpt   83 (196)
T d1dlja2          75 ELVIIATPT   83 (196)
T ss_dssp             SEEEECCCC
T ss_pred             ccccccCCc
Confidence            999999963

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.57  E-value=6.8e-08  Score=75.03  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=52.9

Q ss_pred             CeEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-------CceeccCchhhhcCCCEEEEeeCcc
Q 023866           11 FILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        11 ~kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      |||+|| |+|.||.+||+.|.++||    +|.+| +|++++++.+.+.       ......+........+....++...
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~----~V~l~-~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWE   75 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeee
Confidence            799999 899999999999999999    99999 9999998877651       1112223334445566666666655


Q ss_pred             cHHHHH
Q 023866           83 VDKAAV   88 (276)
Q Consensus        83 ~~~~vl   88 (276)
                      ...+.+
T Consensus        76 ~~~~~~   81 (212)
T d1jaya_          76 HAIDTA   81 (212)
T ss_dssp             HHHHHH
T ss_pred             ccchHH
Confidence            444443

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.55  E-value=1.9e-07  Score=69.56  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----c--CceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~--g~~~~~~~~~~~~~aDvI~la   78 (276)
                      +.+||+|||+|++|.+++..|...|.  ..+|.++ |+++++++-    +..    .  ......+. +.+++||+||++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~--~~elvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGI--AEEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC--CcEEEEe-ecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEe
Confidence            56899999999999999999999885  3489999 999987643    221    1  12233444 457899999998


Q ss_pred             eC
Q 023866           79 VK   80 (276)
Q Consensus        79 v~   80 (276)
                      ..
T Consensus        80 ag   81 (146)
T d1ez4a1          80 AG   81 (146)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.52  E-value=3.1e-07  Score=71.69  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCC--CCCeEEEEeCCCHHHHHHHHHcCcee----ccCchhhhcCCCEEEEeeCccc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVL--PPDRICTAVHSNLKRRDAFESIGVKV----LSDNNAVVEYSDVVVFSVKPQV   83 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~--~~~~V~v~~~r~~~~~~~l~~~g~~~----~~~~~~~~~~aDvI~lav~~~~   83 (276)
                      ++||+|||+|.-|.+-|.+|+++|.-  ..-+|.+-..++....+.+++.|...    ..+..|+++++|+|++.+|++.
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~  123 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSA  123 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHH
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHH
Confidence            47899999999999999999996530  00156655234434556666777652    2356789999999999999998


Q ss_pred             HHHHHHHHhhccccccCCcccCC------CCcccHHHHHHH---cC-CCcEEEEecCccccc------------cCcceE
Q 023866           84 DKAAVITEEAFGFCCCRSEIERP------SGLQRWSRWVEW---TG-HSRFIRVMPNTPSAV------------GEAATV  141 (276)
Q Consensus        84 ~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~---l~-~~~vv~~~p~~~~~~------------~~g~~~  141 (276)
                      -.++.+++        .|++.++      -|. ++......   .| +..++-+-|-.|...            |.|+..
T Consensus       124 Q~~vy~~I--------~p~Lk~G~~L~FaHGF-nI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~  194 (226)
T d1qmga2         124 QADNYEKV--------FSHMKPNSILGLSHGF-LLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINS  194 (226)
T ss_dssp             HHHHHHHH--------HHHSCTTCEEEESSSH-HHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCE
T ss_pred             HHHHHHHH--------HHhcCCCceeeecchh-hhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCcee
Confidence            88999887        6667665      333 44332222   13 345555556655421            225432


Q ss_pred             -eecCCCCCHHHHHHHHHHhhhcCce
Q 023866          142 -MSLGGTATEEDGELIGKLFGSVGKI  166 (276)
Q Consensus       142 -i~~~~~~~~~~~~~v~~ll~~~G~~  166 (276)
                       +......+..+.+....+...+|.-
T Consensus       195 LiAV~QD~sG~A~~~alayA~aIG~g  220 (226)
T d1qmga2         195 SFAVHQDVDGRATDVALGWSIALGSP  220 (226)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHTCS
T ss_pred             EEEEEECCCCcHHHHHHHHHHhCCCC
Confidence             2222334556777778888888853

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=2.2e-07  Score=68.01  Aligned_cols=69  Identities=16%  Similarity=0.352  Sum_probs=55.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-cc---Cc---hhh-hcCCCEEEEeeCcc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS---DN---NAV-VEYSDVVVFSVKPQ   82 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~---~~---~~~-~~~aDvI~lav~~~   82 (276)
                      +++.|||+|.+|..+++.|.+.|+    +|+++ |.+++++++++..+..+ ..   +.   .++ +.+||.+|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~----~vvvi-d~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC----eEEEe-cCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            478999999999999999999999    99999 99999999998866542 11   11   122 67899999999865


Q ss_pred             cH
Q 023866           83 VD   84 (276)
Q Consensus        83 ~~   84 (276)
                      ..
T Consensus        76 ~~   77 (134)
T d2hmva1          76 IQ   77 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.44  E-value=2.2e-07  Score=71.82  Aligned_cols=63  Identities=11%  Similarity=0.123  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|.+|..+++.+..-|.    +|++| ||++..      .......+..+++++||+|++++|-
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~----~v~~~-d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl  102 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPKE------GPWRFTNSLEEALREARAAVCALPL  102 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCCC------SSSCCBSCSHHHHTTCSEEEECCCC
T ss_pred             ccCceEEEeccccccccceeeeecccc----ccccc-cccccc------cceeeeechhhhhhccchhhccccc
Confidence            467899999999999999999999898    99999 987532      2233456788999999999999974

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=5.8e-07  Score=67.04  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH------cCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      ...||+|||+|.+|++++..|...++  ..++.++ |+++++++-    +.+      ....+.....+.+++||+|+++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l--~~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvit   81 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGI--ADEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC   81 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCC--CceEEEE-eeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEe
Confidence            45799999999999999999998886  3489999 999887532    222      1334444556778999999998


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        82 a   82 (148)
T d1ldna1          82 A   82 (148)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=5.5e-07  Score=66.51  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=50.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-----cCceeccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|++|.+++..+...+.  ..++.++ |+++++++...    .     ....+..+..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l--~~el~L~-Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CCEEEEE-ecccccccchhccccccccccccccccCCcHHHhcCCCEEEEec
Confidence            799999999999999999988886  3489999 99988764322    1     12233344556689999999997

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.42  E-value=1.5e-07  Score=72.04  Aligned_cols=78  Identities=14%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |+++||||||+|.||+.++..|.+..   .-++..+++|++++..   ..+.....+..+...+.|+|++|+|+....++
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~---~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~   74 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQP---DMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPE   74 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCS---SEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHH
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCC---CcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHH
Confidence            56789999999999999999887642   1255533388865432   24555556666777899999999999876666


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ....
T Consensus        75 a~~a   78 (170)
T d1f06a1          75 QAPK   78 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.40  E-value=9.3e-07  Score=64.49  Aligned_cols=69  Identities=16%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee-ccC---ch---hh-hcCCCEEEEeeCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSD---NN---AV-VEYSDVVVFSVKP   81 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-~~~---~~---~~-~~~aDvI~lav~~   81 (276)
                      |||-|+|+|.+|..+++.|.+.|+    +|.+. |+++++++.+.+ .+..+ ..|   ..   ++ ++++|.++.+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC----Cccee-cCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            799999999999999999999999    99999 999999998876 46543 222   11   11 5789999888877


Q ss_pred             ccH
Q 023866           82 QVD   84 (276)
Q Consensus        82 ~~~   84 (276)
                      +..
T Consensus        76 d~~   78 (132)
T d1lssa_          76 EEV   78 (132)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.39  E-value=5.5e-07  Score=67.62  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             CCCC-CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----cC----ceeccCchhhhcC
Q 023866            5 PIPA-ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG----VKVLSDNNAVVEY   71 (276)
Q Consensus         5 ~~~~-~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~g----~~~~~~~~~~~~~   71 (276)
                      |.+| +.+||+|||+|.+|++++..|...++   .++.++ |.++++++-..    .    .+    +....+..+.+++
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~---~el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   76 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALREL---ADVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG   76 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCC---ceEEEE-EeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC
Confidence            4554 57899999999999999988888775   389999 99887654322    1    12    1223445567899


Q ss_pred             CCEEEEee
Q 023866           72 SDVVVFSV   79 (276)
Q Consensus        72 aDvI~lav   79 (276)
                      ||+|+++.
T Consensus        77 adiVvita   84 (154)
T d1pzga1          77 ADCVIVTA   84 (154)
T ss_dssp             CSEEEECC
T ss_pred             CCeEEEec
Confidence            99999987

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.39  E-value=4.3e-07  Score=70.59  Aligned_cols=69  Identities=13%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|..+++.+..-|.    +|..| +|...........++....+..+++++||+|++++|-
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~pl  110 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPL  110 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCC
T ss_pred             ccccceeeccccccchhhhhhhhccCc----eEEEE-eeccccccccccccccccCCHHHHHHhccchhhcccc
Confidence            356899999999999999999988887    99999 8875544444556777777888999999999999973

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=72.43  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ...++|||||+|++|+.+++.+..-|.    +|.+| ++.... +.....++....+..++++.||+|++++|-
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~-~~~~~~~~~~~~~l~~ll~~sD~i~~~~pl  114 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGL  114 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             eeCceEEEeccccccccceeeeecccc----ceeec-cCcccc-cchhhhccccccchhhccccCCEEEEeecc
Confidence            346899999999999999999988888    99999 886543 222335776667889999999999999973

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.36  E-value=4.5e-07  Score=70.58  Aligned_cols=68  Identities=13%  Similarity=0.165  Sum_probs=54.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      ..++|||||+|++|+.+++.+..-|.    +|.+| ++.....+.....+.....+..++++.||+|++++|-
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~pl  113 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPS  113 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc----ccccc-cccccccchhhcccccccCCHHHHHhhCCeEEecCCC
Confidence            35899999999999999999888888    99999 8865544443444555556788999999999999974

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.35  E-value=9.1e-07  Score=65.47  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H------cCcee-ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVKV-LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~------~g~~~-~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|++|.+++..|...+.  ..++.++ |+++++.+...    .      ....+ .++..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l--~~el~L~-Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQL--ARELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CceEEEe-ccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence            799999999999999999998875  3489999 99887654322    1      12222 234456789999999986

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.34  E-value=2.1e-06  Score=64.55  Aligned_cols=68  Identities=13%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC--ceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~aDvI~la   78 (276)
                      ...||+|||+|++|++++..|...|++  .++.++ |+++++++-    +..    .+  ........+.+++||+|+++
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~--~ElvLi-D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit   95 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLA--DELALV-DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT   95 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCC--cEEEEE-EeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence            357999999999999999999999874  489999 999877642    222    11  11223345668999999997


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        96 A   96 (160)
T d1i0za1          96 A   96 (160)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.4e-06  Score=65.62  Aligned_cols=69  Identities=13%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH----cC--ceeccCchhhhcCCCEEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----IG--VKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~g--~~~~~~~~~~~~~aDvI~l   77 (276)
                      +...||+|||+|++|+++|..|...|+.  .++.++ |+++++++    .+.+    .+  .....+..+.+++||+|++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~--~elvL~-D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvi   93 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLA--DELALV-DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVII   93 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSC--SEEEEE-CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEE
Confidence            5678999999999999999999998873  489999 99987754    2332    12  1222334456799999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      +.
T Consensus        94 ta   95 (159)
T d2ldxa1          94 TA   95 (159)
T ss_dssp             CC
T ss_pred             ec
Confidence            86

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.32  E-value=1.4e-06  Score=64.67  Aligned_cols=66  Identities=24%  Similarity=0.426  Sum_probs=49.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC--ceeccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~aDvI~lav   79 (276)
                      +||+|||+|.+|++++..|...|.+  .++.++ |+++++++.    +.+    .+  ..+..+..+.+++||+||++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVA--DDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCC--ceEEEE-ecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEec
Confidence            7999999999999999999988863  489999 999987542    222    12  223334445689999999986

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=98.30  E-value=1.3e-06  Score=59.96  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=56.8

Q ss_pred             CCCCCCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHHcCceec-cCchhhhcCCCEEEEee
Q 023866            4 FPIPAESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      +|.+...+||-|||.|..| +++|+.|.+.|+    +|+.+ |+. ....+.+.+.|+.+. ....+.+.+.|+||.+-
T Consensus         2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             CccchhCCEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-eCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            4666678999999999999 778999999999    99999 875 455677888898754 33445578899998864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.28  E-value=1.1e-06  Score=64.88  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC--cee-ccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKV-LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g--~~~-~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|++|.+++..|...|.+  .++.++ |+++++++-    +.+    .+  ..+ ..+..+.+++||+|+++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcC--ceEEEE-ecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEec
Confidence            7999999999999999999888864  489999 999987542    222    11  122 222346789999999986

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.24  E-value=2.1e-06  Score=69.06  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=68.7

Q ss_pred             CCCCCCCCCCCeEEEEcccHH----HHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCc---eeccCchhhh
Q 023866            1 MDAFPIPAESFILGFIGAGKM----AESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV---KVLSDNNAVV   69 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~m----G~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~   69 (276)
                      |+|.|.+ +.+||||||+|.+    +...+..+.+.  ++    +|. ++ |+++++++.+.+ .++   ..+++.++++
T Consensus         8 ~~~~~~~-k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~----~ivav~-d~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (237)
T d2nvwa1           8 LSTVPSS-RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFA   81 (237)
T ss_dssp             GGSSGGG-CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHH
T ss_pred             cccCCCC-CCeEEEEEecCccccHHHHHHHHHHHhcCCCe----EEEEEE-cCCHHHHHHHHHhcccccceeecchhhcc
Confidence            4566654 5689999999975    44445555542  34    766 56 999999887765 443   4567788876


Q ss_pred             c--CCCEEEEeeCcccHHHHHHHHhhccc--cccCCcccCC-CCcccHHHHHHH
Q 023866           70 E--YSDVVVFSVKPQVDKAAVITEEAFGF--CCCRSEIERP-SGLQRWSRWVEW  118 (276)
Q Consensus        70 ~--~aDvI~lav~~~~~~~vl~~~~~~~~--~~~~~~l~~~-~g~~~~~~l~~~  118 (276)
                      .  +-|+|++|+|+....+......+.|.  ..+++++..+ -+. +.++..++
T Consensus        82 ~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~-~~~e~~~l  134 (237)
T d2nvwa1          82 QYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAA-SVQQAEEL  134 (237)
T ss_dssp             HCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSS-SHHHHHHH
T ss_pred             cccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccC-CHHHHHHH
Confidence            5  57899999998865555443321121  1113455443 344 55555544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=2.4e-06  Score=57.63  Aligned_cols=65  Identities=14%  Similarity=0.261  Sum_probs=52.9

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceec-cCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVL-SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav   79 (276)
                      .|||-|||.|.+|. ++|+.|.+.|+    +|+.+ |+.+ +..++|++.|+.+. ....+-+.++|+||.+-
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN----DVYGS-NIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC----eEEEE-eCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            37999999999997 78999999999    99999 8876 56778888998764 23344468899998864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.22  E-value=1.7e-06  Score=63.96  Aligned_cols=67  Identities=16%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHHc-----CceeccCchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFESI-----GVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~~-----g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      ..||+|||+|++|++++..|...++.  .++.++ |+++++++    ++.+.     ...+.....+.+++||+|+++.
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~--~el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTA--NELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCS--SEEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            36999999999999999999988863  489999 99887642    22220     1223333456689999999985

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.21  E-value=1e-06  Score=68.79  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cH---
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VD---   84 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~---   84 (276)
                      ..++|||||+|++|+.+++.+..-|.    +|.+| |+......  ...+.. ..+..+++++||+|++++|-. ..   
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~----~V~~~-d~~~~~~~--~~~~~~-~~~l~~~l~~sDii~~~~plt~~T~~l  113 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPEL--EKKGYY-VDSLDDLYKQADVISLHVPDVPANVHM  113 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHH--HHTTCB-CSCHHHHHHHCSEEEECSCCCGGGTTC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc----ccccc-Cccccccc--ccceee-eccccccccccccccccCCcccccccc
Confidence            46899999999999999999988888    99999 87654322  223443 356788999999999999742 11   


Q ss_pred             --HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866           85 --KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG  120 (276)
Q Consensus        85 --~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~  120 (276)
                        .+.+..+.     ++.-+++.. .+++..+.|.+.+.
T Consensus       114 i~~~~l~~mk-----~~a~lIN~sRG~ivde~aL~~aL~  147 (197)
T d1j4aa1         114 INDESIAKMK-----QDVVIVNVSRGPLVDTDAVIRGLD  147 (197)
T ss_dssp             BSHHHHHHSC-----TTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             ccHHHHhhhC-----CccEEEecCchhhhhhHHHHHHHh
Confidence              34454441     112223322 33335666666664

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.20  E-value=4e-06  Score=61.90  Aligned_cols=66  Identities=26%  Similarity=0.348  Sum_probs=49.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC-ce-eccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG-VK-VLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g-~~-~~~~~~~~~~~aDvI~lav   79 (276)
                      .||+|||+|++|+++|..|...|+.  .++.++ |+++++++-    +..    .+ .. ...+..+.+++||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~--~ElvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIA--REIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCC--cEEEEE-EeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEec
Confidence            5899999999999999999988874  489999 999977542    332    11 12 2234456688999999987

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.15  E-value=3.9e-06  Score=70.49  Aligned_cols=70  Identities=20%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCceeccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKVLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+++|||+|..+...+..|... + +..+|.+| +|++++++.+.+    .++.+..+..+++.+||+|+.|++.
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~-~-~i~~i~v~-~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s  197 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRV-F-DIGEVKAY-DVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS  197 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHH-S-CCCEEEEE-CSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC
T ss_pred             CccEEEEecCcccHHHHHHHHHHH-h-hhhhcccc-cCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC
Confidence            457899999999999999998764 2 55799999 999999877664    5666667788889999999999974

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=3.7e-06  Score=63.82  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      +.++|.|||+|.++.+++..|.+.|.   .+|+++ +|++++.+.+.+ .+.....+..  ..++|+||=|+|
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~---~~I~I~-nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTp   82 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTS   82 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEe-cccHHHHHHHHHhhhhhhhhccc--ccchhhheeccc
Confidence            45789999999999999999999885   479999 999999998877 5554333222  357999999988

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.6e-07  Score=69.62  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEee
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav   79 (276)
                      |.++||.|+| .|.+|+.++..|+++||    +|++. .|++++.......++++.       .+..++++++|+||.++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~   75 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence            6789999999 59999999999999999    99999 999988655444555432       12346688999999987


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      .
T Consensus        76 g   76 (205)
T d1hdoa_          76 G   76 (205)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.10  E-value=6.6e-06  Score=61.18  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=48.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----cC--cee-ccCchhhhcCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG--VKV-LSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~g--~~~-~~~~~~~~~~aDvI~la   78 (276)
                      ..||+|||+|.+|++++..|...+.   .++.++ |+++++++-..    +    .+  ..+ ..+..+.++++|+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL---GDVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEe
Confidence            4699999999999999988777764   489999 99887654322    1    12  222 23445668999999998


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        79 a   79 (150)
T d1t2da1          79 A   79 (150)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8e-06  Score=61.11  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=60.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc--HHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--DKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~--~~~   86 (276)
                      ..++++|+|.|.+|..+|+.+...|-    +|.++ +++|-++-+..-.|..+. +..+++..+|++|+++-..+  -.+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~----~V~v~-e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~~e   96 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGA----RVIIT-EIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIILGR   96 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBCHH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCC----eeEee-ecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchhHH
Confidence            45799999999999999999999998    99999 999866544444677764 57788999999999996433  345


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      -+..+
T Consensus        97 h~~~M  101 (163)
T d1li4a1          97 HFEQM  101 (163)
T ss_dssp             HHTTC
T ss_pred             HHHhc
Confidence            55544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=5.7e-06  Score=63.77  Aligned_cols=106  Identities=10%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHH-
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDK-   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~-   85 (276)
                      ...+++||||+|++|+.+++.+..-|.    +|.+| ++.....+ ....++.. .+.++++++||+|++++|-. ..+ 
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~  114 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPETAG  114 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc----eEEee-cCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhh
Confidence            346899999999999999999887777    99999 88755432 23345554 46788999999999999732 232 


Q ss_pred             ----HHHHHHhhccccccCCcccCC-CCcccHHHHHHHcCCCcEE
Q 023866           86 ----AAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRFI  125 (276)
Q Consensus        86 ----~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~vv  125 (276)
                          +.+..+     +++.-+++.. .+++..+.|.+.+...++.
T Consensus       115 lin~~~l~~m-----k~~a~lIN~sRG~iVde~aL~~aL~~~~i~  154 (184)
T d1ygya1         115 LIDKEALAKT-----KPGVIIVNAARGGLVDEAALADAITGGHVR  154 (184)
T ss_dssp             CBCHHHHTTS-----CTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             hhhHHHHhhh-----CCCceEEEecchhhhhhHHHHHHHhcCcEe
Confidence                333333     1111222222 4444667777766543443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.04  E-value=1.3e-05  Score=57.91  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=66.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI   89 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~   89 (276)
                      |||+|+|+ |+||+.+.+.+.+.++    ++...++++.                 .+.+.++|+||=-+.|+.+.+.++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~----~l~~~id~~~-----------------~~~~~~~DVvIDFS~p~~~~~~l~   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVNG-----------------VEELDSPDVVIDFSSPEALPKTVD   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETTE-----------------EEECSCCSEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC----eEEEEECCCc-----------------HHHhccCCEEEEecCHHHHHHHHH
Confidence            79999996 9999999998888888    7765435431                 233567999999999999888877


Q ss_pred             HHhhccccccCCcccCCCCcccHHHHH---HHcCCCcEEEEecCcc
Q 023866           90 TEEAFGFCCCRSEIERPSGLQRWSRWV---EWTGHSRFIRVMPNTP  132 (276)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~---~~l~~~~vv~~~p~~~  132 (276)
                      ...+.+    .|++....|. +.++++   ++....+++. .||.+
T Consensus        60 ~~~~~~----~p~ViGTTG~-~~~~~~~i~~~ak~~pv~~-a~N~s   99 (128)
T d1vm6a3          60 LCKKYR----AGLVLGTTAL-KEEHLQMLRELSKEVPVVQ-AYSRT   99 (128)
T ss_dssp             HHHHHT----CEEEECCCSC-CHHHHHHHHHHTTTSEEEE-CSCTH
T ss_pred             HHHhcC----CCEEEEcCCC-CHHHHHHHHHHHhhCCEEe-eeccC
Confidence            653322    6778777888 765544   4333344443 35543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.02  E-value=1.4e-05  Score=58.96  Aligned_cols=66  Identities=18%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHH----HHHH------cCcee---ccCchhhhcCCCE
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRD----AFES------IGVKV---LSDNNAVVEYSDV   74 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~----~l~~------~g~~~---~~~~~~~~~~aDv   74 (276)
                      |||+|||+ |++|.+++..|...+.+  .++.++ |+++.  +++    .+..      ...++   .++..+.+++||+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~--~el~L~-D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDv   77 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcc--cccccc-cchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceE
Confidence            79999995 99999999999988863  489999 98753  322    2222      12222   2334567889999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      |+++.
T Consensus        78 VVitA   82 (145)
T d1hyea1          78 VIITS   82 (145)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99985

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.02  E-value=9.5e-06  Score=59.75  Aligned_cols=65  Identities=20%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H------cC--ceeccCchhhhcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IG--VKVLSDNNAVVEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~------~g--~~~~~~~~~~~~~aDvI~l   77 (276)
                      .+||+|||+|++|+++|..|...+.   .++.++ |.++++.+...    .      ..  +..+.+. +.++++|+||+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l---~dl~l~-D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvi   75 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKEL---GDIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVV   75 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCc---ceEEEE-eeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEE
Confidence            3699999999999999999888775   378888 98887644322    1      12  2223444 45789999999


Q ss_pred             ee
Q 023866           78 SV   79 (276)
Q Consensus        78 av   79 (276)
                      +.
T Consensus        76 ta   77 (142)
T d1uxja1          76 TS   77 (142)
T ss_dssp             CC
T ss_pred             ee
Confidence            87

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.5e-05  Score=60.46  Aligned_cols=69  Identities=13%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----C-ceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G-VKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g-~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +.++|.|+|+|..+.+++..|.+.|.    +|+++ +|++++.+.+.+.    + +...........++|+||-|+|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~----~i~I~-nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG   90 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccce----EEEec-cchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence            45799999999999999999999987    89999 9999999888761    2 222222222245789999998754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=8.9e-06  Score=61.89  Aligned_cols=73  Identities=22%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCeEEEEcccHHHHHH--HHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866           10 SFILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~l--a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI   75 (276)
                      .|||+|||+|..|.+.  ...++....+...+|.++ |+++++++....        .+    +..++|..+++++||+|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEE-eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence            4799999999999763  334443322233489999 999988754221        22    33456778899999999


Q ss_pred             EEeeCccc
Q 023866           76 VFSVKPQV   83 (276)
Q Consensus        76 ~lav~~~~   83 (276)
                      |.++....
T Consensus        81 v~~~~~g~   88 (171)
T d1obba1          81 INTAMVGG   88 (171)
T ss_dssp             EECCCTTH
T ss_pred             eeeccccc
Confidence            99986543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.01  E-value=2.5e-06  Score=66.69  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-c----
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V----   83 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~----   83 (276)
                      ..++|||||+|++|+.+++.+..-|.    +|++| |+.+....   ..... ..+..++++.||+|++++|-. .    
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~---~~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~l  114 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKGD---HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHI  114 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSC---CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTS
T ss_pred             cceeeeeeecccccccccccccccce----eeecc-CCccchhh---hcchh-HHHHHHHHHhcccceeeeccccccccc
Confidence            46899999999999999999988888    99999 88754311   12233 346788899999999999732 2    


Q ss_pred             -HHHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866           84 -DKAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG  120 (276)
Q Consensus        84 -~~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~  120 (276)
                       -.+.+..+.     ++.-+++.. .+++..+.|-+.+.
T Consensus       115 i~~~~l~~mk-----~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1         115 INEAAFNLMK-----PGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             BCHHHHHHSC-----TTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             ccHHHhhccC-----CceEEEecccHhhhhhHHHHHHHh
Confidence             134444441     112223322 44436666766664

>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.00  E-value=1.3e-07  Score=66.76  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 023866          170 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI  249 (276)
Q Consensus       170 ~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l  249 (276)
                      ++++||.++|.+++.|+++++   +++....+...+......+..++|++++++..   .+|++|.+.+.++.......|
T Consensus         1 SPeeHD~~~A~vSHlPHlia~---al~~~~~~~~~~~~~~~~~agggfrD~TRiA~---s~p~mW~dI~~~N~~~i~~~l   74 (110)
T d2g5ca1           1 SPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIMWRDIFLENKENVMKAI   74 (110)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCBTTBCGGGCCTTTGGGC---CC---SCHHHHHHHHHHTHHHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHH---HHHHHHHHhhcchHHHHHHcchhHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999998765   34443333333333345678999999998864   799999999999988888888


Q ss_pred             HHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          250 HELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       250 ~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +.+++.  .++..|.    +.+.+.++++++
T Consensus        75 ~~~~~~L~~~~~~l~~~D~~~l~~~l~~a~~  105 (110)
T d2g5ca1          75 EGFEKSLNHLKELIVREAEEELVEYLKEVKI  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            888764  5566654    567777777664

>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.00  E-value=2.5e-06  Score=60.47  Aligned_cols=99  Identities=10%  Similarity=0.035  Sum_probs=72.0

Q ss_pred             CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHH
Q 023866          170 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP--RELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA  247 (276)
Q Consensus       170 ~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~--~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~  247 (276)
                      ++++||.++|.+++.|++++.   +++......--+  .....++..++|++++++..   .+|.+|.+.+.++.....+
T Consensus         1 TPeeHD~~~A~iSHLPHlia~---~l~~~~~~~~~~~~~~~~~~~ag~gfrD~tRiA~---s~p~mW~dI~~~N~~~i~~   74 (114)
T d2f1ka1           1 TPADHDQAVAWISHLPVMVSA---ALIQACAGEKDGDILKLAQNLASSGFRDTSRVGG---GNPELGTMMATYNQRALLK   74 (114)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHH---HHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGG---SCHHHHHHHHHHSHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHH---HHHHHHHhhhhhhhHHHHHHHhhhhHHHHHHHHc---cCHHHHHHHHHHHHHHHHH
Confidence            367899999999999998654   333333221111  13456788899999998865   6899999999988888888


Q ss_pred             HHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          248 GIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       248 ~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      .|+.+.+.  .++..|.    +.+.+.++++++
T Consensus        75 ~l~~~~~~L~~l~~~l~~~d~~~l~~~l~~a~~  107 (114)
T d2f1ka1          75 SLQDYRQHLDQLITLISNQQWPELHRLLQQTNG  107 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88887664  5666664    667777777765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=7.8e-06  Score=62.23  Aligned_cols=69  Identities=12%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----CceeccCchhhhcCCCEEEEeeCcc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~~aDvI~lav~~~   82 (276)
                      +.++|.|+|+|.++.+++..|.+.+.    +|+++ +|++++++.+.+ .    .+...........++|+||-|+|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~----~i~I~-nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCc----eeeec-cchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            56799999999999999999987554    89999 999999988876 1    2222222223357899999999854

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=6.4e-06  Score=60.83  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc------C---ceeccCchhhhcCCCEEEEee
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------G---VKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~------g---~~~~~~~~~~~~~aDvI~lav   79 (276)
                      ||+|||+ |++|++++..|...+.+  .++.++ |.++.+.+.+.-.      .   .....+..+.+++||+||++-
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~--~elvLi-Di~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVita   76 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLV--SRLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPA   76 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTC--SEEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCcc--ceEEEE-eccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECC
Confidence            8999995 99999999999988874  489999 9887665443221      1   111234567789999999975

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.95  E-value=9.8e-06  Score=60.70  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHHH--HHHHHHcCceeccCc-hhh-----hcCCCEEEEe
Q 023866            8 AESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVLSDN-NAV-----VEYSDVVVFS   78 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~~g~~~~~~~-~~~-----~~~aDvI~la   78 (276)
                      .+++||||||+|.+|+- +...|.+..+   .++...++|+++.  .+..++.|+....+. +++     ..+.|+||+|
T Consensus         2 ~kkirvaIIGaG~ig~~~~~~~l~~~~~---~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~A   78 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDLMIKVLRNAKY---LEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDA   78 (157)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHCSS---EEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred             CCCcEEEEEcCcHHHHHHHHHHHhhCCc---ceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEc
Confidence            35689999999999986 5555543322   2565444888653  344455787655432 222     2468999999


Q ss_pred             eCccc
Q 023866           79 VKPQV   83 (276)
Q Consensus        79 v~~~~   83 (276)
                      +|+..
T Consensus        79 Tpag~   83 (157)
T d1nvmb1          79 TSASA   83 (157)
T ss_dssp             SCHHH
T ss_pred             CCchh
Confidence            99753

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.95  E-value=1.4e-05  Score=67.31  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCce--eccCchhhhcCCCEEEEeeCc
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVKP   81 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDvI~lav~~   81 (276)
                      +..+++|||+|..+..-+..+...  .+..+|++| +|++++.+.+.+     .|+.  .+.+.+++++.||+|++|+..
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v--~~i~~V~v~-~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas  203 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKH--LGIEEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD  203 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHH--SCCCEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred             CCceEEEEcccHHHHHHHHHHhhh--cceeeeEEE-ecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc
Confidence            457899999999999999988653  356799999 999998877654     3554  578889999999999999853

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.93  E-value=2.8e-05  Score=60.51  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCccc-HH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQV-DK   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~-~~   85 (276)
                      .+.++|+|-|+|++|..+++.|.+.|.    +|+++ |.++++.+.....|..... ++++. .+|||++.|-.... -.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga----kvvv~-d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~   98 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITT   98 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEe-cchHHHHHHHHhhcccccC-ccccccccceeeecccccccccH
Confidence            466899999999999999999999998    99999 9999999888888877654 34444 48999998755443 34


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +..+.+
T Consensus        99 ~~a~~i  104 (201)
T d1c1da1          99 EVARTL  104 (201)
T ss_dssp             HHHHHC
T ss_pred             HHHhhh
Confidence            555555

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=6.3e-06  Score=63.75  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cH--
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VD--   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~--   84 (276)
                      ...++|||||+|.+|..+++.+..-|.    +|++| ++.....    ........+..++++.||+|++++|-. ..  
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~T~~  112 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKN  112 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTT
T ss_pred             ccceEEEEeecccchhhhhhhcccccc----eEeec-cccccch----hhhhhhhhhHHHHHhhccceeecccCCcchhh
Confidence            346899999999999999999988888    99999 8764321    122333457788999999999998732 22  


Q ss_pred             ---HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHcCCCcEE
Q 023866           85 ---KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGHSRFI  125 (276)
Q Consensus        85 ---~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~~~vv  125 (276)
                         ++.+..+.     ++.-+++.. .++...+.|.+.+...++.
T Consensus       113 li~~~~l~~mk-----~~a~lIN~aRG~lvde~aL~~aL~~~~~~  152 (188)
T d1sc6a1         113 MMGAKEISLMK-----PGSLLINASRGTVVDIPALADALASKHLA  152 (188)
T ss_dssp             CBCHHHHHHSC-----TTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             hccHHHHhhCC-----CCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence               45555551     111223322 4443777777776533333

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=1.4e-05  Score=56.71  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=63.5

Q ss_pred             CeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++|+|||+    |..|..+.+.|++.||    +|+-+ +++.+..     .|...+.+..++-...|++++++|++.+.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~   71 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVGLQ   71 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC----EEEEE-ccccccc-----cCccccccchhccccceEEEEEeCHHHHHH
Confidence            68999995    7899999999999999    88887 7654322     688888888888788899999999999999


Q ss_pred             HHHHHhhccc
Q 023866           87 AVITEEAFGF   96 (276)
Q Consensus        87 vl~~~~~~~~   96 (276)
                      ++++..+.|.
T Consensus        72 ~l~~~~~~g~   81 (116)
T d1y81a1          72 VAKEAVEAGF   81 (116)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            9998855443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=5.5e-06  Score=56.41  Aligned_cols=65  Identities=20%  Similarity=0.133  Sum_probs=46.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCce--eccCchhhhcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVK--VLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~--~~~~~~~~~~~aDvI~lav   79 (276)
                      +.+||.|||+|..|.+.++.|.+.|.    +|++| |.++.  ..+.+.. ++.  ......+...+.|+||++-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~----~v~~~-D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC----EEEEe-eCCcCchhHHHHhh-ccceeecccchhhhccCCEEEECC
Confidence            45789999999999999999999998    99999 76443  2233322 222  2223355567899999974

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=2.5e-05  Score=58.73  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CeEEEEcccHHHHHHHHHHH-h-CCCCCCCeEEEEeCCCHHHHHHHHH-------c--CceeccCchhhhcCCCEEEEee
Q 023866           11 FILGFIGAGKMAESIAKGVA-K-SGVLPPDRICTAVHSNLKRRDAFES-------I--GVKVLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~-~-~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g~~~~~~~~~~~~~aDvI~lav   79 (276)
                      |||+|||+|..|.+.+-... + .......+|.++ |.++++.+...+       .  .+.++++..+.+++||+||++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita   79 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF   79 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEE-ecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence            79999999998877774432 2 211123589999 999998764332       1  2345567778899999999997


Q ss_pred             Cc
Q 023866           80 KP   81 (276)
Q Consensus        80 ~~   81 (276)
                      -.
T Consensus        80 ~~   81 (162)
T d1up7a1          80 RP   81 (162)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=7.1e-06  Score=61.82  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHH--HHH------HHcCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRR--DAF------ESIGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      ..+||+|+|+ |+||+.+++.+.+. ++    ++...++|.....  +.+      ...++.+..+..++.+.+|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~----~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGV----QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe
Confidence            4589999996 99999999988765 33    4442226543211  111      113556677778888899999999


Q ss_pred             eCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHH
Q 023866           79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE  117 (276)
Q Consensus        79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~  117 (276)
                      +.|+.+.+.++...+.+    .+++....|. +.+++..
T Consensus        79 s~p~~~~~~~~~a~~~~----~~~ViGTTG~-~~~~~~~  112 (162)
T d1diha1          79 TRPEGTLNHLAFCRQHG----KGMVIGTTGF-DEAGKQA  112 (162)
T ss_dssp             SCHHHHHHHHHHHHHTT----CEEEECCCCC-CHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcc----ceeEEecCCC-cHHHHHH
Confidence            99998888877653323    6777777888 7655543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.80  E-value=6.2e-05  Score=52.89  Aligned_cols=86  Identities=13%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHH-cCceecc--CchhhhcCCCE
Q 023866            1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFES-IGVKVLS--DNNAVVEYSDV   74 (276)
Q Consensus         1 ~~~~~~~~--~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~-~g~~~~~--~~~~~~~~aDv   74 (276)
                      |+.+|...  +.++|.|||.|.+|..-++.|++.|-    +|+++ +.... ....+.+ .++....  -..+.+.++++
T Consensus         1 M~~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga----~v~v~-~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~l   75 (113)
T d1pjqa1           1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL   75 (113)
T ss_dssp             CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred             CCccceEEEeCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eccCChHHHHHHhcCCceeeccCCCHHHhCCCcE
Confidence            77777663  57899999999999999999999998    99998 65432 2333333 3444321  12334788999


Q ss_pred             EEEeeCcccHH-HHHHHH
Q 023866           75 VVFSVKPQVDK-AAVITE   91 (276)
Q Consensus        75 I~lav~~~~~~-~vl~~~   91 (276)
                      |+.++.+..+. .+....
T Consensus        76 v~~at~d~~~n~~i~~~a   93 (113)
T d1pjqa1          76 AIAATDDDTVNQRVSDAA   93 (113)
T ss_dssp             EEECCSCHHHHHHHHHHH
T ss_pred             EeecCCCHHHHHHHHHHH
Confidence            99999777654 444443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.79  E-value=5.5e-05  Score=55.43  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHH----HHHH-----cCceeccCchhhhcCCCEEEEe
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRD----AFES-----IGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~----~l~~-----~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      .||+||| +|++|++++..|...++.  .++.++ |++  +++++    .+..     ....+.....+.+++||+|+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~--~el~L~-Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIA--DEVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCC--SEEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCC--CEEEEE-ecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEe
Confidence            3899999 699999999999998874  478898 864  33322    2322     1223333334557899999997


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        78 a   78 (142)
T d1o6za1          78 A   78 (142)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.76  E-value=5.9e-05  Score=56.04  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=61.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc--HHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--DKA   86 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~--~~~   86 (276)
                      ..+++.|+|.|..|..+|..+...|-    +|+++ +++|-++-+..-.|..+ .+.+++++.+|++|.++....  -.+
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga----~V~V~-E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~~   95 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKLE   95 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCC----EEEEE-ecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccHH
Confidence            45799999999999999999999998    99999 99996654444478887 467899999999999996543  344


Q ss_pred             HHHHH
Q 023866           87 AVITE   91 (276)
Q Consensus        87 vl~~~   91 (276)
                      -+..+
T Consensus        96 h~~~M  100 (163)
T d1v8ba1          96 HLLKM  100 (163)
T ss_dssp             HHTTC
T ss_pred             HHHHh
Confidence            45544

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=4.7e-05  Score=56.02  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=43.8

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHH---HHHHcC--c--e--eccCchhhhcCCCEEEEee
Q 023866           11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRD---AFESIG--V--K--VLSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~---~l~~~g--~--~--~~~~~~~~~~~aDvI~lav   79 (276)
                      |||+||| +|++|++++..|... ++  ..++.++ |..+...-   .+.+..  .  .  ...+..+.++++|+||++-
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~--~~el~L~-D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvita   77 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCT--TCEEEEE-CSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCC--CcEEEEe-cccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECC
Confidence            7999999 599999999877533 43  2389999 98653211   222211  1  1  1234456788999999985

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=3.2e-05  Score=55.78  Aligned_cols=76  Identities=17%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             CeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866           11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA   86 (276)
Q Consensus        11 ~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~   86 (276)
                      ++|+|||+    |.+|..+.++|.+.|   ..+|+.+ +++.+..     .|...+.+..++-...|++++++|+..+.+
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~---~g~v~pV-nP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~~~~   79 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYK---KGKVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRFVKD   79 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCC---SSEEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHHHHH
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcC---CCcEEEe-ccCcccc-----CCeEeecchhhcCCCCceEEEecChHHhHH
Confidence            78999997    899999999987654   2388888 7654321     688888888888788999999999999999


Q ss_pred             HHHHHhhcc
Q 023866           87 AVITEEAFG   95 (276)
Q Consensus        87 vl~~~~~~~   95 (276)
                      ++++..+.|
T Consensus        80 ~~~~~~~~g   88 (129)
T d2csua1          80 TLIQCGEKG   88 (129)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            998885444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2.2e-05  Score=57.96  Aligned_cols=82  Identities=11%  Similarity=0.016  Sum_probs=52.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH--HcCce-eccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE--SIGVK-VLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~--~~g~~-~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      |+||||||+ |..|+-+.+.|++....+..+++.. .++...-....  ..... ......+...++|++|+|+|.+...
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~-~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~   79 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFF-STSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN   79 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEE-ESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEe-eccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence            569999998 9999999988877644355567666 44332211111  11111 1122234568999999999988877


Q ss_pred             HHHHHHh
Q 023866           86 AAVITEE   92 (276)
Q Consensus        86 ~vl~~~~   92 (276)
                      ++...+.
T Consensus        80 ~~~~~~~   86 (146)
T d1t4ba1          80 EIYPKLR   86 (146)
T ss_dssp             HHHHHHH
T ss_pred             HhhHHHH
Confidence            7776663

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.55  E-value=0.0001  Score=53.69  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      .++|+|||+    +..|..++..|.+.||    +|+.+ +++.+.     -.|..++.+..++-...|++++++|++.+.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~----~v~pV-nP~~~~-----i~G~~~~~sl~dlp~~iD~v~i~vp~~~~~   88 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY----DVYPV-NPKYEE-----VLGRKCYPSVLDIPDKIEVVDLFVKPKLTM   88 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSE-----ETTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC----EEEEE-CCcccc-----cCCCcccccccccCccceEEEEEeCHHHHH
Confidence            368999996    6799999999999999    88888 664321     168888888888877899999999999999


Q ss_pred             HHHHHHhhcc
Q 023866           86 AAVITEEAFG   95 (276)
Q Consensus        86 ~vl~~~~~~~   95 (276)
                      +++++..+.|
T Consensus        89 ~~~~e~~~~g   98 (139)
T d2d59a1          89 EYVEQAIKKG   98 (139)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999885444

>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.54  E-value=8.8e-05  Score=53.34  Aligned_cols=97  Identities=11%  Similarity=0.023  Sum_probs=66.0

Q ss_pred             CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866          171 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVASPGGTTI  246 (276)
Q Consensus       171 e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~v~sp~g~t~  246 (276)
                      .++||.++|++++.|+++..   +++....+.+.+......+..++++.    +.++.   +.+|++|.+.+..+... .
T Consensus         2 a~eHD~~~A~ishLpH~~~~---al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa---~~~p~lw~dI~~~N~~~-~   74 (128)
T d2pv7a1           2 ATEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADIIMDKSEN-L   74 (128)
T ss_dssp             HHHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHHHC----C-H
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHH---CCCHHHHHHHHHHCHHH-H
Confidence            35799999999999998654   56666667889988888888888874    45554   36899999999887654 4


Q ss_pred             HHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866          247 AGIHELEKS--GFRGILM----NAVVAAAKRSRE  274 (276)
Q Consensus       247 ~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~  274 (276)
                      +.++.+.+.  .+...|.    +++.+.++++++
T Consensus        75 ~~l~~~~~~l~~l~~~i~~~D~~~l~~~~~~a~~  108 (128)
T d2pv7a1          75 AVIETLKQTYDEALTFFENNDRQGFIDAFHKVRD  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            667766553  3444443    455555555543

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=4.9e-06  Score=63.39  Aligned_cols=101  Identities=11%  Similarity=0.051  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCcccH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      +.++||||||+|.||...+..|.+...  ...+.++ +....+  .... .+.. ..+.++++.  +.|+|++|+|++..
T Consensus         5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~--~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H   78 (172)
T d1lc0a1           5 SGKFGVVVVGVGRAGSVRLRDLKDPRS--AAFLNLI-GFVSRR--ELGSLDEVR-QISLEDALRSQEIDVAYICSESSSH   78 (172)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHH--HTTEEEE-EEECSS--CCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHhCCC--CcEEEEE-eccchH--HHHHhhccC-cCCHHHHHhCCCcchhhhccccccc
Confidence            367899999999999999888765321  0124444 322111  1111 2232 235566654  57999999999876


Q ss_pred             HHHHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866           85 KAAVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT  119 (276)
Q Consensus        85 ~~vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l  119 (276)
                      .+++....+.|    ++++-.+ -+. +.++..++.
T Consensus        79 ~~~~~~al~~g----k~V~~EKP~a~-~~~e~~~l~  109 (172)
T d1lc0a1          79 EDYIRQFLQAG----KHVLVEYPMTL-SFAAAQELW  109 (172)
T ss_dssp             HHHHHHHHHTT----CEEEEESCSCS-CHHHHHHHH
T ss_pred             ccccccccccc----hhhhcCCCccc-cHHHHHHHH
Confidence            66665543222    4555433 334 555555543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.48  E-value=0.00012  Score=55.67  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=50.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----Cc-----eeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GV-----KVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~-----~~~~~~~~~~~~aDvI~la   78 (276)
                      +.++|.|||+|.++.+++..|.+.|     +|+++ +|++++++.+.+ .    ..     .-..+......++|+||-|
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-----~i~I~-nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~   90 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINA   90 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-----ceeee-hhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccC
Confidence            5679999999999999999986654     89999 999999887764 1    11     1123344456789999999


Q ss_pred             eCc
Q 023866           79 VKP   81 (276)
Q Consensus        79 v~~   81 (276)
                      +|.
T Consensus        91 tp~   93 (177)
T d1nvta1          91 TPI   93 (177)
T ss_dssp             SCT
T ss_pred             Ccc
Confidence            874

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.47  E-value=0.00016  Score=54.97  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-HHHHHc-----------------CceeccCchhhhcC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESI-----------------GVKVLSDNNAVVEY   71 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~-----------------g~~~~~~~~~~~~~   71 (276)
                      |.||||.|.|+||+.+++.+.+..-   -+|..++++++... ..+...                 ++.+..+..+...+
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~d---ievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~   77 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT   77 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCC---CEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhc
Confidence            4699999999999999999987542   26665547765433 222222                 23333344455567


Q ss_pred             CCEEEEeeCccc
Q 023866           72 SDVVVFSVKPQV   83 (276)
Q Consensus        72 aDvI~lav~~~~   83 (276)
                      +|+||-|++...
T Consensus        78 vDiViecTG~f~   89 (178)
T d1b7go1          78 SDIVVDTTPNGV   89 (178)
T ss_dssp             CSEEEECCSTTH
T ss_pred             CCEEEECCCCcC
Confidence            899999987653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=9.6e-05  Score=55.64  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             CCCeEEEEcccHHHHHHH-HHHHh-CCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCE
Q 023866            9 ESFILGFIGAGKMAESIA-KGVAK-SGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la-~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDv   74 (276)
                      +..||+|||+|..|.+.+ ..++. .-.+...+|.++ |.++++++....        .+    +...++..+++++||+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEE-cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence            357999999999887533 33333 211122489999 999998763221        12    3345677788999999


Q ss_pred             EEEeeCc
Q 023866           75 VVFSVKP   81 (276)
Q Consensus        75 I~lav~~   81 (276)
                      ||++.-+
T Consensus        81 Vvitag~   87 (167)
T d1u8xx1          81 VMAHIRV   87 (167)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999843

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=8.5e-05  Score=56.80  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cCce--ec--cC---chhhhcCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IGVK--VL--SD---NNAVVEYSD   73 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g~~--~~--~~---~~~~~~~aD   73 (276)
                      +.++|.|||+|.+|.+++..|.+.|.   .+|+++ +|++++.+++..        ....  ..  .+   ..+...++|
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~---~~i~i~-nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCC---ceEeee-ccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            45799999999999999999999875   589999 999876654332        1211  11  11   223456889


Q ss_pred             EEEEeeCc
Q 023866           74 VVVFSVKP   81 (276)
Q Consensus        74 vI~lav~~   81 (276)
                      +||=|+|.
T Consensus        93 iiIN~Tp~  100 (182)
T d1vi2a1          93 ILTNGTKV  100 (182)
T ss_dssp             EEEECSST
T ss_pred             eeccccCC
Confidence            99988874

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.41  E-value=4.4e-05  Score=56.21  Aligned_cols=82  Identities=10%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      |||||||+ |..|.-+.+.|+++...+..++.....++. .+.-.+.. ..........+..+++|++|+|+|.....++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~   80 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV   80 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence            79999987 999999998887643224346654412221 11100000 1111112233456899999999999888888


Q ss_pred             HHHHh
Q 023866           88 VITEE   92 (276)
Q Consensus        88 l~~~~   92 (276)
                      .+.+.
T Consensus        81 ~~~l~   85 (147)
T d1mb4a1          81 YPALR   85 (147)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            77764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.41  E-value=0.00038  Score=54.91  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccH-H
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVD-K   85 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~-~   85 (276)
                      .+.++|.|-|.|++|..+++.|.+.|.    +|+++ +.++.+.+.+.. .|....+..+-.-.+|||++.|-....+ .
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga----kvv~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~  111 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLND  111 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBST
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEee-cccHHHHHHHHHhcCCcccCCcccccccccEecccccccccCh
Confidence            356899999999999999999999998    99999 999999887776 6766554333334589999999765543 4


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +....+
T Consensus       112 ~~~~~l  117 (230)
T d1leha1         112 FTIPQL  117 (230)
T ss_dssp             THHHHC
T ss_pred             HHhhcc
Confidence            555565

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00013  Score=51.04  Aligned_cols=43  Identities=14%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+|...| ...||||||.|.+|..|+....+-|+    ++.++ |++++
T Consensus         3 ~~~~~~~-~~~kigIlGgGQL~rMla~aA~~lG~----~v~v~-d~~~~   45 (111)
T d1kjqa2           3 LGTALRP-AATRVMLLGSGELGKEVAIECQRLGV----EVIAV-DRYAD   45 (111)
T ss_dssp             BCCTTST-TCCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-ESSTT
T ss_pred             cCCCCCC-CCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCCCC
Confidence            4566666 55799999999999999999999999    99999 88765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00063  Score=51.04  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc-----Cchhhh--------cCCCEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-----DNNAVV--------EYSDVVV   76 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~-----~~~~~~--------~~aDvI~   76 (276)
                      ..+|.|+|+|.+|...+..+...|.   .+|+++ ++++++++.+++.|+....     +..+..        ..+|+||
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGA---AQVVVT-DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCC---ceEEec-cCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence            4589999999999998888877775   368888 9999999999888865321     111211        2579999


Q ss_pred             EeeCccc-HHHHHHHH
Q 023866           77 FSVKPQV-DKAAVITE   91 (276)
Q Consensus        77 lav~~~~-~~~vl~~~   91 (276)
                      -|+.... ++..+.-+
T Consensus       103 d~~G~~~~~~~a~~~~  118 (171)
T d1pl8a2         103 ECTGAEASIQAGIYAT  118 (171)
T ss_dssp             ECSCCHHHHHHHHHHS
T ss_pred             eccCCchhHHHHHHHh
Confidence            9997554 44444443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.00018  Score=53.34  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCH--HHHHHHH----Hc------CceeccCchhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDAFE----SI------GVKVLSDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~~l~----~~------g~~~~~~~~~~~~~a   72 (276)
                      +-+||+|||+ |++|.+++..|...+.+.   ..++..+ |.++  ++++.+.    ..      .+....+..+..+++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEe-cCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence            4579999995 999999999887655422   2345666 7654  3333332    11      233456667889999


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |+||++-
T Consensus        81 dvVVita   87 (154)
T d5mdha1          81 DVAILVG   87 (154)
T ss_dssp             SEEEECC
T ss_pred             eEEEEec
Confidence            9999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=0.00019  Score=53.19  Aligned_cols=70  Identities=16%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCe---EEEE-eCCCHHHHHHHHH----c------CceeccCchhhhcCCCE
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDR---ICTA-VHSNLKRRDAFES----I------GVKVLSDNNAVVEYSDV   74 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~---V~v~-~~r~~~~~~~l~~----~------g~~~~~~~~~~~~~aDv   74 (276)
                      -+||+|||+ |.+|+.++..|....++...+   +.++ .+++.++.+.+..    .      .+....+..+.++++|+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            369999997 999999999998776533211   2233 1445555443321    1      23345566778899999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      ||++-
T Consensus        84 Viita   88 (154)
T d1y7ta1          84 ALLVG   88 (154)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.24  E-value=0.00053  Score=51.10  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---Cceecc----CchhhhcCCCEEEEee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS----DNNAVVEYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~----~~~~~~~~aDvI~lav   79 (276)
                      .-|+.|||+|..|..=++....-|-    +|+++ |.+++++++++..   .+....    ...+.+++||+||-++
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA----~V~~~-D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aa  103 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAV  103 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCC----EEEEE-eCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEee
Confidence            4689999999999999888888897    99999 9999999988872   233222    2346678999999998

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.24  E-value=0.00061  Score=50.97  Aligned_cols=77  Identities=13%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccC-----chhh---h-----cCCCE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSD-----NNAV---V-----EYSDV   74 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~-----~~~~---~-----~~aDv   74 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++++++.+++.|...  ..+     ..+.   +     ..+|+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga----~vi~v-~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc----ccccc-chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence            3589999999999999988888887    99999 99999999998877532  111     1111   1     24788


Q ss_pred             EEEeeCcc-cHHHHHHHH
Q 023866           75 VVFSVKPQ-VDKAAVITE   91 (276)
Q Consensus        75 I~lav~~~-~~~~vl~~~   91 (276)
                      ||-|+... .+...++-+
T Consensus       102 vid~~g~~~~~~~a~~~~  119 (170)
T d1e3ja2         102 TIDCSGNEKCITIGINIT  119 (170)
T ss_dssp             EEECSCCHHHHHHHHHHS
T ss_pred             eeecCCChHHHHHHHHHH
Confidence            88888654 345554433

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=0.00035  Score=52.56  Aligned_cols=72  Identities=14%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             CCeEEEEcccHHHH--HHHHHHHhCCCCCCCeEEEEeCCCHHH--HHHHH--------HcCc----eeccCchhhhcCCC
Q 023866           10 SFILGFIGAGKMAE--SIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFE--------SIGV----KVLSDNNAVVEYSD   73 (276)
Q Consensus        10 ~~kIgiIG~G~mG~--~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~--------~~g~----~~~~~~~~~~~~aD   73 (276)
                      ++||.|||+|..|.  .++.-+.....+...+|.++ |+++++  .+.+.        ..+.    ..++|..+.+++||
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~-Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaD   79 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGAD   79 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEE-cCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCC
Confidence            47999999997764  44443433221223488899 998754  33222        1222    24466678889999


Q ss_pred             EEEEeeCcc
Q 023866           74 VVVFSVKPQ   82 (276)
Q Consensus        74 vI~lav~~~   82 (276)
                      +||++....
T Consensus        80 vVv~ta~~~   88 (169)
T d1s6ya1          80 FVTTQFRVG   88 (169)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEccccC
Confidence            999998543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.20  E-value=0.00011  Score=53.91  Aligned_cols=81  Identities=12%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--CceeccCchhhhcCCCEEEEeeCcccHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      +.|||||||+ |..|.-+.+-|.+..| +..++.....++ ..-+.+...  .........+...++|++|+|+|.....
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~h-P~~~l~~~~s~~-~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~   78 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAE-SAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSR   78 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTT-TTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC-CceEEEEEeecc-cCCcceeeccccchhccchhhhhccceEEEecCCcchhh
Confidence            3589999988 9999999998865555 545776541332 111111111  1112222234467899999999988777


Q ss_pred             HHHHHH
Q 023866           86 AAVITE   91 (276)
Q Consensus        86 ~vl~~~   91 (276)
                      +....+
T Consensus        79 ~~~~~~   84 (144)
T d2hjsa1          79 AHAERA   84 (144)
T ss_dssp             HHHHHH
T ss_pred             hhcccc
Confidence            776665

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.00013  Score=52.92  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~   85 (276)
                      .++|+|||+    +..|..+++.|.+.||    +++.+ +.++... .  -.|...+.+..++-...|++++++|+..+.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~----~~~~v-~~~~~~~-~--i~g~~~~~~l~~i~~~iD~v~v~~p~~~v~   84 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----RVLPV-NPRFQGE-E--LFGEEAVASLLDLKEPVDILDVFRPPSALM   84 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC----EEEEE-CGGGTTS-E--ETTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC----CceEE-Eeccccc-e--eeceecccchhhccCCCceEEEeccHHHHH
Confidence            368999998    8899999999999999    99988 6654211 0  157777788888777889999999999988


Q ss_pred             HHHHHHhhcc
Q 023866           86 AAVITEEAFG   95 (276)
Q Consensus        86 ~vl~~~~~~~   95 (276)
                      +++++..+.|
T Consensus        85 ~~v~~~~~~g   94 (136)
T d1iuka_          85 DHLPEVLALR   94 (136)
T ss_dssp             TTHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            8888874333

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0025  Score=45.72  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhh-hcCCCEEEEeeCcccHHHHH
Q 023866           12 ILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVDKAAV   88 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDvI~lav~~~~~~~vl   88 (276)
                      ||+|+|+ |+||+.+++.+.+. ++    ++..-+|+...               .... -.++|+||=.+.|+.+.+.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~----~l~~~~d~~~~---------------~~~~~~~~~DvvIDFS~p~~~~~~~   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL----TLSAELDAGDP---------------LSLLTDGNTEVVIDFTHPDVVMGNL   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS----EEEEEECTTCC---------------THHHHTTTCSEEEECCCTTTHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCc---------------hhhhccccCCEEEEcccHHHHHHHH
Confidence            7999995 99999999987654 33    55533365321               1111 24689999999999988888


Q ss_pred             HHHhhccccccCCcccCCCCcccHHHHHH
Q 023866           89 ITEEAFGFCCCRSEIERPSGLQRWSRWVE  117 (276)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~  117 (276)
                      +...+.+    .|++....|. +.+++++
T Consensus        62 ~~~~~~~----~~~ViGTTG~-~~~~~~~   85 (135)
T d1yl7a1          62 EFLIDNG----IHAVVGTTGF-TAERFQQ   85 (135)
T ss_dssp             HHHHHTT----CEEEECCCCC-CHHHHHH
T ss_pred             HHHHhcC----CCEEEecccc-chhHHHH
Confidence            7664333    6777777888 7654443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.04  E-value=0.00076  Score=50.85  Aligned_cols=78  Identities=19%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cC---chhhh------cCCCEEEEe
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD---NNAVV------EYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~---~~~~~------~~aDvI~la   78 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|+++ +++++|.+.+++.|+..+  .+   ..+.+      ...|+||-+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga---~~Vi~~-d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~  103 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGA---GRIIGV-GSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA  103 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC---SCEEEE-CCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccc---cccccc-cchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence            4589999999999988887776664   368888 999999999988886421  11   11111      137899999


Q ss_pred             eCcc-cHHHHHHHH
Q 023866           79 VKPQ-VDKAAVITE   91 (276)
Q Consensus        79 v~~~-~~~~vl~~~   91 (276)
                      +... .++..+.-+
T Consensus       104 ~g~~~~~~~a~~~~  117 (174)
T d1jqba2         104 GGGSETLSQAVKMV  117 (174)
T ss_dssp             SSCTTHHHHHHHHE
T ss_pred             cCCHHHHHHHHHHH
Confidence            8643 455555443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.00  E-value=0.0012  Score=49.89  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV   59 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~   59 (276)
                      -||.|||+|..|..=++-...-|-    +|+++ |.++++.++++..+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA----~V~v~-D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGG   73 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTC
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhhc
Confidence            589999999999988888888887    99999 999999999988653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.90  E-value=0.0014  Score=49.31  Aligned_cols=77  Identities=18%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-ec-cC---chhhhc-----CCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VL-SD---NNAVVE-----YSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~-~~---~~~~~~-----~aDvI~la   78 (276)
                      ...+|.|+|+|.+|...++.+...|.   ..|++. ++++++++.+++.|.. +. .+   ..+.++     ..|+||-|
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~---~~v~~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~  103 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGA---SIIIAV-DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES  103 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC---SEEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred             CCCEEEEeCCCHHHhhhhhccccccc---ceeeee-ccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence            34689999999999999988777776   256677 9999999999888864 21 11   112111     36888888


Q ss_pred             eCccc-HHHHHH
Q 023866           79 VKPQV-DKAAVI   89 (276)
Q Consensus        79 v~~~~-~~~vl~   89 (276)
                      +.... ++..+.
T Consensus       104 ~G~~~~~~~~~~  115 (174)
T d1f8fa2         104 TGSPEILKQGVD  115 (174)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHh
Confidence            86543 444443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.002  Score=48.66  Aligned_cols=79  Identities=11%  Similarity=0.050  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-----cCchhh---h------cCCCE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-----SDNNAV---V------EYSDV   74 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-----~~~~~~---~------~~aDv   74 (276)
                      ...+|.|+|+|.+|...++.+...|.   .+|+++ ++++++.+.+++.|...+     .+..+.   +      ...|+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dv  103 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGA---ENVIVI-AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADF  103 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB---SEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCccchhheeccccccc---cccccc-ccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceE
Confidence            34689999999999988887777774   378899 999999999988886421     111111   1      13678


Q ss_pred             EEEeeCc-ccHHHHHHHH
Q 023866           75 VVFSVKP-QVDKAAVITE   91 (276)
Q Consensus        75 I~lav~~-~~~~~vl~~~   91 (276)
                      ||-|+.. ..++..+.-+
T Consensus       104 vid~vG~~~~~~~a~~~l  121 (182)
T d1vj0a2         104 ILEATGDSRALLEGSELL  121 (182)
T ss_dssp             EEECSSCTTHHHHHHHHE
T ss_pred             EeecCCchhHHHHHHHHh
Confidence            8877753 3345454443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.86  E-value=0.0013  Score=49.50  Aligned_cols=73  Identities=16%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCce------------------eccCchhhhc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVK------------------VLSDNNAVVE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~------------------~~~~~~~~~~   70 (276)
                      ++||||.|.|+||+.+++.+.+..-   -+|..+++.++.. ...+...+..                  +..+..++..
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~d---ieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCC---ceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence            3699999999999999999876531   2555443666533 3334433322                  2223344556


Q ss_pred             CCCEEEEeeCcccHH
Q 023866           71 YSDVVVFSVKPQVDK   85 (276)
Q Consensus        71 ~aDvI~lav~~~~~~   85 (276)
                      ++|+|+-|++...-.
T Consensus        79 ~vDvViEcTG~f~~~   93 (172)
T d2czca2          79 KVDIIVDATPGGIGA   93 (172)
T ss_dssp             TCSEEEECCSTTHHH
T ss_pred             cCCEEEECCCCCCCH
Confidence            788888888765433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.84  E-value=0.0013  Score=50.33  Aligned_cols=68  Identities=13%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCce-----ec--cCchhhhcCCC
Q 023866            7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVK-----VL--SDNNAVVEYSD   73 (276)
Q Consensus         7 ~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~-----~~--~~~~~~~~~aD   73 (276)
                      ..+.++|-|.| .|.+|..+++.|.+.|.    +|+++ +|++++.+.+.+     ..+.     +.  .+..+++.+.|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc----chhhc-ccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcC
Confidence            34568888888 59999999999999998    99999 999999877654     1211     11  12334566778


Q ss_pred             EEEEee
Q 023866           74 VVVFSV   79 (276)
Q Consensus        74 vI~lav   79 (276)
                      +||-+.
T Consensus        95 ilin~A  100 (191)
T d1luaa1          95 FVFTAG  100 (191)
T ss_dssp             EEEECC
T ss_pred             eeeecC
Confidence            777664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.83  E-value=0.0015  Score=45.71  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      .+||.|||.|.+|.-+|..|.+.|.    +|+++ .|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~   54 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI----DSYIF-ARG   54 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc----cceee-ehh
Confidence            4789999999999999999999998    99999 764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.82  E-value=0.0022  Score=48.24  Aligned_cols=71  Identities=17%  Similarity=0.128  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHHHHH----Hc------CceeccCchhhhcC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDAFE----SI------GVKVLSDNNAVVEY   71 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~l~----~~------g~~~~~~~~~~~~~   71 (276)
                      .+..||.|+|+ |.+|.+++..|.......   .-++.++ |.+..  .++.+.    +.      .+..+++..+..++
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~-di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLL-GSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEe-cCccccchhcchhhhhcccccccccCccccccchhhccC
Confidence            34568999996 999999999887654322   2245666 76553  333222    11      23456677888999


Q ss_pred             CCEEEEee
Q 023866           72 SDVVVFSV   79 (276)
Q Consensus        72 aDvI~lav   79 (276)
                      +|+||+.-
T Consensus       101 aDvVvi~a  108 (175)
T d7mdha1         101 VDWALLIG  108 (175)
T ss_dssp             CSEEEECC
T ss_pred             CceEEEee
Confidence            99999986

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0013  Score=49.04  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---cCc---hhhhcCCCEEEEeeCc-c
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SDN---NAVVEYSDVVVFSVKP-Q   82 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~~---~~~~~~aDvI~lav~~-~   82 (276)
                      ..+|.|+|+|.+|...++.+...|.    ++++. ++++++.+.+++.|....   .+.   ....+..|++|-++.. .
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga----~~i~~-~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~  105 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGA----HVVAF-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH  105 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred             CCEEEEeccchHHHHHHHHhhcccc----cchhh-ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence            4689999999999988888888887    88888 899999988888886422   111   1223468999999864 3


Q ss_pred             cHHHHHHH
Q 023866           83 VDKAAVIT   90 (276)
Q Consensus        83 ~~~~vl~~   90 (276)
                      .+...+.-
T Consensus       106 ~~~~~~~~  113 (168)
T d1uufa2         106 NLDDFTTL  113 (168)
T ss_dssp             CHHHHHTT
T ss_pred             hHHHHHHH
Confidence            45555543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00084  Score=50.18  Aligned_cols=66  Identities=12%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---cCchh----hhcCCCEEEEeeC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SDNNA----VVEYSDVVVFSVK   80 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~~~~----~~~~aDvI~lav~   80 (276)
                      ..+|.|+|+|.+|...++.+...|.    +|+++ ++++++++.+++.|+..+   .+..+    .....|++|.++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~----~vi~~-~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~  100 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA----ETYVI-SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS  100 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc----ccccc-ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence            4689999999999998887777887    99998 999999999988886421   11111    2235688887764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.73  E-value=0.0015  Score=48.95  Aligned_cols=71  Identities=11%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcC------------------ceeccCchhhhc
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIG------------------VKVLSDNNAVVE   70 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g------------------~~~~~~~~~~~~   70 (276)
                      |.||||-|.|++|+.+++.+...+.   -+|...+++++.. ...+...+                  +.+..+..++.+
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~d---i~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~   77 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCC---ceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc
Confidence            5799999999999999998877652   2555443665432 22333322                  222223344556


Q ss_pred             CCCEEEEeeCccc
Q 023866           71 YSDVVVFSVKPQV   83 (276)
Q Consensus        71 ~aDvI~lav~~~~   83 (276)
                      ++|+|+-|++...
T Consensus        78 ~vDvViEcTG~f~   90 (171)
T d1cf2o1          78 EADIVIDCTPEGI   90 (171)
T ss_dssp             TCSEEEECCSTTH
T ss_pred             CCCEEEEccCCCC
Confidence            7888888887653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0039  Score=45.57  Aligned_cols=67  Identities=7%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHHcCceec-cCc--hh-----hhcCCCEEEEe
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFESIGVKVL-SDN--NA-----VVEYSDVVVFS   78 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~~g~~~~-~~~--~~-----~~~~aDvI~la   78 (276)
                      -.|-|+|+|.+|..+++.|.+.|+    +|++. +.++++..    .+...|+.+. .|.  .+     -+++||.+|++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC----CEEEE-eccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            358999999999999999999998    99998 88876533    3333566432 221  12     15689999999


Q ss_pred             eCcc
Q 023866           79 VKPQ   82 (276)
Q Consensus        79 v~~~   82 (276)
                      ++.+
T Consensus        79 ~~~d   82 (153)
T d1id1a_          79 SDND   82 (153)
T ss_dssp             SSCH
T ss_pred             cccH
Confidence            8765

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.64  E-value=0.001  Score=50.65  Aligned_cols=82  Identities=15%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH----cCce-eccCchhhhcCCCEEEEe
Q 023866            7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES----IGVK-VLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         7 ~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~----~g~~-~~~~~~~~~~~aDvI~la   78 (276)
                      ++++.||||||+ |-.|.-+.+-|.++   +.-++.....++..  +......    .... ......+...++|++|+|
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~H---P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANH---PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTC---SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhC---CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeec
Confidence            467899999988 99999999977653   22355433133321  1222211    1111 122233456789999999


Q ss_pred             eCcccHHHHHHHH
Q 023866           79 VKPQVDKAAVITE   91 (276)
Q Consensus        79 v~~~~~~~vl~~~   91 (276)
                      +|.....++...+
T Consensus        79 lp~~~s~~~~~~l   91 (183)
T d2cvoa1          79 LPHGTTQEIIKGL   91 (183)
T ss_dssp             CSSSHHHHHHHTS
T ss_pred             cccchHHHHHHHH
Confidence            9998887777655

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.52  E-value=0.0013  Score=51.16  Aligned_cols=65  Identities=11%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEE--EEeCCCHHHHHHHHHcCcee-------ccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC--TAVHSNLKRRDAFESIGVKV-------LSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~--v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~aDvI~la   78 (276)
                      ++++|.|.| .|.+|+.+++.|++.|+    ++.  .. .|++++.+.+.. ++..       ..+..++++++|.||.+
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~----~v~v~~~-~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~   75 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD----KFVAKGL-VRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVIL   75 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT----TCEEEEE-ESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC----cEEEEEE-cCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEE
Confidence            688999998 59999999999999997    544  45 788887665543 2221       11234557789999987


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        76 a   76 (252)
T d2q46a1          76 T   76 (252)
T ss_dssp             C
T ss_pred             E
Confidence            5

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.51  E-value=0.007  Score=45.34  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c----C-chh-h-----hcCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----D-NNA-V-----VEYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~----~-~~~-~-----~~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   .+|+++ |++++|++..++.|+... +    + ..+ .     -...|++|.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~---~~Vi~v-d~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~  105 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGA---SRIIGI-DLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE  105 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC---ceEEEe-cCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence            4579999999999999999888884   378999 999999999998887532 1    1 111 1     125788888


Q ss_pred             eeCcc
Q 023866           78 SVKPQ   82 (276)
Q Consensus        78 av~~~   82 (276)
                      ++-..
T Consensus       106 ~~g~~  110 (176)
T d1d1ta2         106 VIGHL  110 (176)
T ss_dssp             CSCCH
T ss_pred             eCCch
Confidence            77543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.0038  Score=43.87  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +++.|||.|.+|.-+|..|.+.|.    +|+++ .|++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGY----HVKLI-HRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcccc----eEEEE-eccc
Confidence            689999999999999999999998    99998 7754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.45  E-value=0.0065  Score=45.44  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC----c---hhhh-----cCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD----N---NAVV-----EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~----~---~~~~-----~~aDvI~   76 (276)
                      ...+|.|+|+|.+|...++.+...|.   .+|++. |++++|++..++.|++..-+    +   .+..     ...|++|
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~---~~Vi~~-d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi  102 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV  102 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC---ceeecc-CChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence            34689999999999999998887775   368888 99999999999988753211    1   1111     2468888


Q ss_pred             EeeCcc
Q 023866           77 FSVKPQ   82 (276)
Q Consensus        77 lav~~~   82 (276)
                      .++-..
T Consensus       103 d~~g~~  108 (174)
T d1p0fa2         103 ECAGRI  108 (174)
T ss_dssp             ECSCCH
T ss_pred             EcCCCc
Confidence            877543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.45  E-value=0.0092  Score=44.61  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-------hhhh-----cCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDvI~   76 (276)
                      ...+|.|+|+|.+|...++.+...|.   .+|++. +++++|++..++.|....-+.       ....     ...|++|
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga---~~Vi~~-d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC---ceeeee-ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            34689999999999999888887775   368888 999999998888886432111       1111     2468888


Q ss_pred             EeeCcc
Q 023866           77 FSVKPQ   82 (276)
Q Consensus        77 lav~~~   82 (276)
                      -|+-..
T Consensus       104 e~~G~~  109 (174)
T d1e3ia2         104 DCAGTA  109 (174)
T ss_dssp             ESSCCH
T ss_pred             Eecccc
Confidence            887543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0013  Score=42.48  Aligned_cols=34  Identities=9%  Similarity=0.197  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +++|||||.|-.|+.|+..-.+-|+    ++.++ +.++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~----~v~vl-dp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGI----AVWPV-GLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTE----EEEEE-CTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC----EEEEE-cCCC
Confidence            4789999999999999999999999    99999 8764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.42  E-value=0.0075  Score=44.43  Aligned_cols=47  Identities=9%  Similarity=0.198  Sum_probs=41.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV   61 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~   61 (276)
                      ..+|.|+|+|.+|...+..+...|.    +|++. ++++++.+.+++.|...
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~----~v~~~-~~~~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADL   74 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSE
T ss_pred             CCEEEEeecccchhhhhHHHhcCCC----eEecc-CCCHHHhhhhhhcCcce
Confidence            4689999999999998888888887    89999 99999999998888653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.38  E-value=0.0017  Score=51.09  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..+||.|||+|.+|.+.|..|.++|+    +|+++ +|+
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~----~V~vi-er~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGY----SVHIL-ARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCC----CEEEE-eCC
Confidence            45799999999999999999999999    99999 875

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.37  E-value=0.002  Score=48.70  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=47.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCC--H---HHHHHHHH--cC---c--eeccCchhhhcCCCEE
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSN--L---KRRDAFES--IG---V--KVLSDNNAVVEYSDVV   75 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~--~---~~~~~l~~--~g---~--~~~~~~~~~~~~aDvI   75 (276)
                      |+||+|||+ |-.|.-+.+-|.++-.+   +|. ++ .++  .   ++......  .+   .  ....+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~---ei~~l~-~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM---TITALT-VSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE---EEEEEE-EETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC---ceEeeE-eecccccccccccccccccccccccccccchhhhhhhccccee
Confidence            689999996 99999999988775221   543 33 222  1   12222111  11   1  1222333445689999


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      |+|+|+....+....+
T Consensus        77 f~alp~~~s~~~~~~~   92 (179)
T d2g17a1          77 FLATAHEVSHDLAPQF   92 (179)
T ss_dssp             EECSCHHHHHHHHHHH
T ss_pred             eccccchhHHHHhhhh
Confidence            9999998777776665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.35  E-value=0.0046  Score=45.72  Aligned_cols=46  Identities=9%  Similarity=0.180  Sum_probs=40.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ..+|.|+|+|.+|...+..+...|.    +|+++ ++++++++.+++.|..
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~----~Vi~~-~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL----HVAAI-DIDDAKLELARKLGAS   73 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCS
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC----cccee-cchhhHHHhhhccCcc
Confidence            4689999999999999888888887    99999 9999999998888864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.33  E-value=0.00059  Score=48.65  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhh-cCCCEEEEeeCcccHH
Q 023866           10 SFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVV-EYSDVVVFSVKPQVDK   85 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~-~~aDvI~lav~~~~~~   85 (276)
                      ..+|.|+|+|++|.+++..+. +.++    ++..++|-++++.-.. -.|+.+.  ++..+.+ +..++.++++|....+
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~----~iv~fiDdd~~k~G~~-I~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~   77 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRP-VRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQ   77 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCE-ETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCc----EEEEEEeCchHhcCCE-ECCEEEecHHHHHHHHhhcccEEEEeCCHHHHH
Confidence            348999999999999998764 3455    7776658777543210 0466654  2222222 3578889999988888


Q ss_pred             HHHHHHh
Q 023866           86 AAVITEE   92 (276)
Q Consensus        86 ~vl~~~~   92 (276)
                      +++..+.
T Consensus        78 ~I~d~l~   84 (126)
T d2dt5a2          78 KAADLLV   84 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.0023  Score=48.13  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=47.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cC-cee-ccCchhhhcCCCEEEEeeCcc
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IG-VKV-LSDNNAVVEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g-~~~-~~~~~~~~~~aDvI~lav~~~   82 (276)
                      |+||||+|+ |-.|.-+.+-|.++-+   -+|.....++..  +......  .+ ... ..+.++..+++|++|+|+|..
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~---~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~   77 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG   77 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCC---ceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccH
Confidence            689999988 9999999997766432   255433244322  2222211  11 111 134445556899999999988


Q ss_pred             cHHHHHHH
Q 023866           83 VDKAAVIT   90 (276)
Q Consensus        83 ~~~~vl~~   90 (276)
                      ...+....
T Consensus        78 ~s~~~~~~   85 (176)
T d1vkna1          78 ASYDLVRE   85 (176)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            76666543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.20  E-value=0.0052  Score=49.56  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHH---HHHHcCceec-cC------chhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRD---AFESIGVKVL-SD------NNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~---~l~~~g~~~~-~~------~~~~~~~a   72 (276)
                      +++||.|+|+ |.+|+.++..|++.||    +|++. .|++.     +.+   .+...++.+. .|      ..+....+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~   76 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV   76 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCc
Confidence            4689999985 9999999999999999    99998 88642     222   2333555432 11      23456788


Q ss_pred             CEEEEeeCc
Q 023866           73 DVVVFSVKP   81 (276)
Q Consensus        73 DvI~lav~~   81 (276)
                      +.+|.+.++
T Consensus        77 ~~~~~~~~~   85 (312)
T d1qyda_          77 DVVISALAG   85 (312)
T ss_dssp             SEEEECCCC
T ss_pred             chhhhhhhh
Confidence            999988753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.10  E-value=0.0067  Score=42.87  Aligned_cols=65  Identities=11%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCc--hhh-----hcCCCEEEEeeCccc
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVKPQV   83 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDvI~lav~~~~   83 (276)
                      -|-|+|.|.+|..+++.|.  ++    +|.+. +.++++.+.+...|+.+. .|.  .+.     +++|+.++++++.+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~----~i~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS----EVFVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS   74 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG----GEEEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CC----CCEEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence            4778999999999999883  55    78888 999999998888876532 222  222     568999999887654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.06  E-value=0.018  Score=42.71  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----cCch---hhh-----cCCCEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SDNN---AVV-----EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~~~~---~~~-----~~aDvI~l   77 (276)
                      ..+|.|+|+|.+|...++.+...|.   ..|++. ++++++.+.+++.|+...    .+..   +.+     ..+|+||-
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~---~~vi~~-~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid  104 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGA---SRIIGV-DINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE  104 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhc---CceEEE-cccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence            4589999999999988888887875   267777 999999998888886422    1111   111     34788888


Q ss_pred             eeCcccH
Q 023866           78 SVKPQVD   84 (276)
Q Consensus        78 av~~~~~   84 (276)
                      ++-....
T Consensus       105 ~~G~~~~  111 (176)
T d2fzwa2         105 CIGNVKV  111 (176)
T ss_dssp             CSCCHHH
T ss_pred             cCCCHHH
Confidence            8865443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.01  E-value=0.0056  Score=50.80  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH-cCceec----cCc----hhhhcCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKVL----SDN----NAVVEYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~-~g~~~~----~~~----~~~~~~aDvI~   76 (276)
                      ++++|.|+|+ |.+|+.+++.|++.||    +|++. .|++++.  +.+.. .|+.+.    .+.    ..+...+|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~----~V~~l-~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC----eEEEE-ECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            5789999985 9999999999999999    99998 7876543  33433 465432    122    23567889999


Q ss_pred             EeeCcc
Q 023866           77 FSVKPQ   82 (276)
Q Consensus        77 lav~~~   82 (276)
                      ...++.
T Consensus        77 ~~~~~~   82 (350)
T d1xgka_          77 INTTSQ   82 (350)
T ss_dssp             ECCCST
T ss_pred             eecccc
Confidence            887643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.00  E-value=0.0036  Score=49.45  Aligned_cols=35  Identities=11%  Similarity=0.105  Sum_probs=31.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      .+||.|||+|.-|.+.|..|.++|+    +|+++ +|+++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~----~v~v~-Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV----DVDVY-ERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCCC
Confidence            4799999999999999999999999    99999 88643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.98  E-value=0.0039  Score=50.66  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=33.8

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +.+.+.+||.|||+|.-|.+-|..|.++|+    +|+++ ++++
T Consensus        25 ~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~----~V~vl-E~~~   63 (370)
T d2iida1          25 KATSNPKHVVIVGAGMAGLSAAYVLAGAGH----QVTVL-EASE   63 (370)
T ss_dssp             CCCSSCCEEEEECCBHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-eCCC
Confidence            344566899999999999999999999999    99999 8753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.95  E-value=0.031  Score=41.42  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---cCchhhh---------cCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SDNNAVV---------EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~~~~~~---------~~aDvI~   76 (276)
                      ...+|.|+|+|.+|...+..+...|.   .+|++. ++++++.+.+++.|....   .+.++.+         ...|++|
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~---~~Vi~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vi  103 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF  103 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC---ceEEee-cCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence            34689999999999999998888774   377788 999999998888876421   1111111         2478888


Q ss_pred             EeeCccc-HHHHHH
Q 023866           77 FSVKPQV-DKAAVI   89 (276)
Q Consensus        77 lav~~~~-~~~vl~   89 (276)
                      -++-... .+..+.
T Consensus       104 d~~G~~~~~~~a~~  117 (176)
T d2jhfa2         104 EVIGRLDTMVTALS  117 (176)
T ss_dssp             ECSCCHHHHHHHHH
T ss_pred             ecCCchhHHHHHHH
Confidence            8875543 344443

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.93  E-value=0.0074  Score=43.17  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             CCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-------HHHHH----cCceeccCchh
Q 023866            9 ESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-------DAFES----IGVKVLSDNNA   67 (276)
Q Consensus         9 ~~~kIgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-------~~l~~----~g~~~~~~~~~   67 (276)
                      +.+||+|+|+          +.-...++..|.+.|.    +|.+| |+.-+..       +.+..    .+.....+..+
T Consensus        12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   86 (136)
T d1mv8a3          12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY----ELRIF-DRNVEYARVHGANKEYIESKIPHVSSLLVSDLDE   86 (136)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC----EEEEE-CHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHH
T ss_pred             CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc----ccccc-CCCCCHHHHhhhhhhhhhhccccccceeehhhhh
Confidence            4579999997          4567789999999998    99999 7532221       11111    23345678889


Q ss_pred             hhcCCCEEEEeeCcccHHHHHHHH
Q 023866           68 VVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        68 ~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                      ++.++|+||++++.+.+.++....
T Consensus        87 ~i~~~D~ivi~t~h~~f~~l~~~~  110 (136)
T d1mv8a3          87 VVASSDVLVLGNGDELFVDLVNKT  110 (136)
T ss_dssp             HHHHCSEEEECSCCGGGHHHHHSC
T ss_pred             hhhhceEEEEEeCCHHHHHHHHHh
Confidence            999999999999999888775443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.83  E-value=0.035  Score=41.00  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-c---Cc---hhhh-----cCCCEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S---DN---NAVV-----EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~---~~---~~~~-----~~aDvI~   76 (276)
                      ...+|.|+|+|.+|...+..+...|-   .+|++. +++++|++.+++.|+... +   +.   .+..     ...|++|
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~---~~Vi~~-~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi  103 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAV-DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL  103 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhh---chheee-cchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence            45689999999999988888777664   368888 999999999999886422 1   11   1111     2478888


Q ss_pred             EeeCccc
Q 023866           77 FSVKPQV   83 (276)
Q Consensus        77 lav~~~~   83 (276)
                      -++-...
T Consensus       104 d~~G~~~  110 (175)
T d1cdoa2         104 ECVGNVG  110 (175)
T ss_dssp             ECSCCHH
T ss_pred             eecCCHH
Confidence            8875443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.76  E-value=0.018  Score=47.42  Aligned_cols=66  Identities=15%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH------cC-c-e-ec------cCchhhhcCC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------IG-V-K-VL------SDNNAVVEYS   72 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~g-~-~-~~------~~~~~~~~~a   72 (276)
                      ..++|.|.|+ |-+|+.++..|+++|+    +|.+. .|+.++.+.+..      .+ . . +.      .+..+++.++
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~----~V~~~-vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccc
Confidence            4589999966 9999999999999999    99988 788877665543      11 1 0 11      1234667889


Q ss_pred             CEEEEee
Q 023866           73 DVVVFSV   79 (276)
Q Consensus        73 DvI~lav   79 (276)
                      |.|+-+.
T Consensus        85 ~~v~~~a   91 (342)
T d1y1pa1          85 AGVAHIA   91 (342)
T ss_dssp             SEEEECC
T ss_pred             hhhhhhc
Confidence            9988765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.76  E-value=0.0042  Score=49.56  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |+|.|||+|.-|.+.|..|.++|+    +|+++ +++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~----~V~vl-E~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT----DAVLL-ESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC----CEEEE-CSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence            789999999999999999999999    99999 875

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.0051  Score=43.87  Aligned_cols=86  Identities=13%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------HhC
Q 023866          186 AYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EKS  255 (276)
Q Consensus       186 ~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l-------~~~  255 (276)
                      .+++..+.++.|+   +.+.|+|+++.++++..+..++.-+..   ..|..+.+..+.|+++.....+++       ++.
T Consensus        13 ~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~---~~p~~~~~~~~~~~f~~~~~~KDl~l~~~~a~~~   89 (132)
T d2cvza1          13 ALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATEN---LIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGE   89 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHH---THHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHhhhhhhHHHHHhhHHHHHHHHHHHc
Confidence            3445556666666   569999999999999877666554432   346667777778988888887764       345


Q ss_pred             ChHHHHHHHHHHHHHHHhh
Q 023866          256 GFRGILMNAVVAAAKRSRE  274 (276)
Q Consensus       256 ~~~~~~~~a~~~~~~r~~~  274 (276)
                      +++..+.++..+.|+++.+
T Consensus        90 g~~~pl~~~~~~~~~~a~~  108 (132)
T d2cvza1          90 KAPSPLLRLAREVYEMAKR  108 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHH
Confidence            8888888999988888865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0064  Score=45.78  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..+||+|||.|.-|..-|..|.+.||    +|+++ ++++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~----~Vtl~-E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH----QVTLF-DAHS   76 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc----ceEEE-eccC
Confidence            46899999999999999999999999    99999 8865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.013  Score=43.50  Aligned_cols=47  Identities=13%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ...+|.|+|+ |.+|....+-....|.    +|++. .+++++.+.+++.|+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~----~vi~~-~~~~~~~~~~~~~Ga~   75 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGL----KILGT-AGTEEGQKIVLQNGAH   75 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCS
T ss_pred             CCCEEEEEeccccccccccccccccCc----ccccc-cccccccccccccCcc
Confidence            3458999996 9999998888888888    89888 7889999888888864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.71  E-value=0.013  Score=43.39  Aligned_cols=47  Identities=9%  Similarity=0.145  Sum_probs=38.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ..+|.|+|+|.+|...+.-+...|.   ..|+++ ++++++++.+++.|..
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~---~~vv~~-~~~~~k~~~~~~~ga~   79 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTP---ATVIAL-DVKEEKLKLAERLGAD   79 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCC---CEEEEE-ESSHHHHHHHHHTTCS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcC---cccccc-cchhHHHHHHhhcccc
Confidence            4579999999999988887766664   267777 9999999999887754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.71  E-value=0.0081  Score=47.77  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +||++|  |.+.+|.++++.|.+.|.    +|.++ +|++++++.+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   43 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF----AVAIA-DYNDATAKAVAS   43 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            588887  457899999999999999    99999 999998876654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0064  Score=52.24  Aligned_cols=78  Identities=14%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---H----------------HHH----HHHH--cCce----
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---K----------------RRD----AFES--IGVK----   60 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~----------------~~~----~l~~--~g~~----   60 (276)
                      ..||.|||+|.+|+.+++.|...|+   .+|+++ |.+.   +                |++    .+++  .++.    
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gv---g~i~lv-D~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTC---CCEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-ECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            4689999999999999999999997   467777 5532   1                222    2222  2222    


Q ss_pred             ---eccCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866           61 ---VLSDNNAVVEYSDVVVFSVKPQVDKAAVITE   91 (276)
Q Consensus        61 ---~~~~~~~~~~~aDvI~lav~~~~~~~vl~~~   91 (276)
                         +.+.+.+.++++|+||.|+.....+..+.+.
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~  146 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM  146 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             eccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence               1233456788999999999876666555443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=0.0047  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .+||+|||+|..|...|..|.+.|+   .+|+++ +|++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~---~~V~v~-E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGY---SDITIF-EKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCC---CeEEEE-EecC
Confidence            4799999999999999999999998   249998 8764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0038  Score=48.88  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--e-----ccCchhhhcCCCEEEEee
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--V-----LSDNNAVVEYSDVVVFSV   79 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~-----~~~~~~~~~~aDvI~lav   79 (276)
                      |+++||.|.|+ |-+|+.+++.|++.|.+  .+|++. +|++.+...-....+.  .     ..+..++.+.+|++|.++
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~--~~v~~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~   88 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLF--SKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL   88 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCC--SEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCC--CEEEEE-ecChhhhcccccceeeeeeecccccccccccccccccccccc
Confidence            56689999976 99999999999998842  278888 8876443221111221  1     124456678899999987


Q ss_pred             C
Q 023866           80 K   80 (276)
Q Consensus        80 ~   80 (276)
                      -
T Consensus        89 ~   89 (232)
T d2bkaa1          89 G   89 (232)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.63  E-value=0.0054  Score=50.46  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +++||.|||+|.-|.+.|..|.++|+    +|.++ +++.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~----~V~vi-Ek~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH----QVHII-DQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC----CEEEE-ECCC
Confidence            36899999999999999999999999    99999 7653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.60  E-value=0.0094  Score=44.12  Aligned_cols=47  Identities=15%  Similarity=0.112  Sum_probs=38.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK   60 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~   60 (276)
                      ..+|.|+|+ |.+|...+..+...|.   .+|+++ ++++++.+.+++.|..
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~---~~V~~~-~~~~~~~~~~~~~Ga~   75 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGV-DVREEAVEAAKRAGAD   75 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEE-ESSHHHHHHHHHHTCS
T ss_pred             CCEEEEEeccccceeeeeeccccccc---cccccc-ccchhhHHHHHHcCCc
Confidence            458999995 9999988887777774   378888 9999999999888763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.017  Score=45.87  Aligned_cols=40  Identities=10%  Similarity=0.403  Sum_probs=33.8

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+|  |.+.+|.++++.|.+.|+    +|+++ +|++++++.+.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~----~Vv~~-~r~~~~l~~~~~   52 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELAA   52 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            55555  558999999999999999    99999 999998877654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.01  Score=41.52  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +|+.|||.|.+|.=+|..|.+.|.    +|+++ .+++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~----~Vtii-~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS----KVTVV-EFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc----ceeEE-Eecc
Confidence            689999999999999999999998    99999 7754

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.54  E-value=0.011  Score=42.02  Aligned_cols=86  Identities=22%  Similarity=0.252  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------HhC
Q 023866          186 AYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EKS  255 (276)
Q Consensus       186 ~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l-------~~~  255 (276)
                      .+++..+.++.|+   +.+.|++++++++++..+..++..+..   ..| .+.+..+.|+++...+.+++       ++.
T Consensus        14 ~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~---~~~-~~~~~~~~~~f~~~l~~KDl~l~~~~a~~~   89 (133)
T d1vpda1          14 VIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAP-MVMDRNFKPGFRIDLHIKDLANALDTSHGV   89 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH---HHH-HHHTTCCCCSSBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhh---ccc-hhhhccCCCCchHHHHHHHHHHHHHHHHHc
Confidence            3445556677776   569999999999999888766655533   124 45555568999988887765       345


Q ss_pred             ChHHHHHHHHHHHHHHHhhc
Q 023866          256 GFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       256 ~~~~~~~~a~~~~~~r~~~~  275 (276)
                      +++-.+.+...+.|+++.+.
T Consensus        90 ~~~~p~~~~~~~~~~~a~~~  109 (133)
T d1vpda1          90 GAQLPLTAAVMEMMQALRAD  109 (133)
T ss_dssp             TCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHHHc
Confidence            77788888888888877653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.0088  Score=49.77  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             CCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            4 FPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         4 ~~~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .=||++.|||.|.| .|-+|+.++..|++.|+    +|++. |+.+
T Consensus         9 ~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~----~V~~~-d~~~   49 (363)
T d2c5aa1           9 QYWPSENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKK   49 (363)
T ss_dssp             CSCTTSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSC
T ss_pred             CcCCCCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCC
Confidence            44778899999996 59999999999999999    99988 7643

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.41  E-value=0.011  Score=46.90  Aligned_cols=41  Identities=12%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      -||++|  |.+.||.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~   44 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL----RVFVC-ARGEEGLRTTLK   44 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            378888  568899999999999999    99999 999988876654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.39  E-value=0.025  Score=44.91  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=33.1

Q ss_pred             eEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| |+ +.||.++++.|.+.|.    +|.++ +|++++++...+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~   46 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASKA   46 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555 54 7899999999999999    99999 999988776544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.33  E-value=0.031  Score=42.39  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=47.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-----h----hhh--cCCCEEEE
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-----N----AVV--EYSDVVVF   77 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-----~----~~~--~~aDvI~l   77 (276)
                      ...+|.|+|+|.+|...+......|.   .+|++. +++++|++.+++.|+....+.     .    +..  ..+|++|-
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid  100 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGA---AVVIVG-DLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD  100 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcc---cceeee-cccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence            34689999999999876666555554   378888 999999999988887643211     1    111  14788888


Q ss_pred             eeC
Q 023866           78 SVK   80 (276)
Q Consensus        78 av~   80 (276)
                      ++-
T Consensus       101 ~vG  103 (195)
T d1kola2         101 AVG  103 (195)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.012  Score=40.80  Aligned_cols=33  Identities=12%  Similarity=0.086  Sum_probs=30.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +||.|||.|..|.-+|..|.+.|.    +|+++ .|.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA----KTHLF-EMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc----EEEEE-eecc
Confidence            689999999999999999999998    99999 7754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.21  E-value=0.0095  Score=49.11  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=30.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++||+|||+|.-|.+.|..|++.|.  ..+|+++ +|+.
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~--~~~v~vf-Ek~~   39 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKA--FDQVTLF-ERRG   39 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC--CSEEEEE-CSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCC--CCCEEEE-ECCC
Confidence            35789999999999999999987762  1289999 8874

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.18  E-value=0.0058  Score=44.82  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=47.8

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA   87 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v   87 (276)
                      -||||||+ |-.|.-|.+-|.++.+ +..++... ..+...-+.+..  ..............++|++|+++++....+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f-p~~~l~~~-~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~   79 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYL-ASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY   79 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS-CEEEEEEE-ECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC-CceEEEEe-cccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhH
Confidence            38999998 9999999997766643 22345544 322111111111  1122223344556789999999998876666


Q ss_pred             HHHH
Q 023866           88 VITE   91 (276)
Q Consensus        88 l~~~   91 (276)
                      ..+.
T Consensus        80 ~~~~   83 (154)
T d2gz1a1          80 APYA   83 (154)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            6554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.031  Score=41.51  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---cC--chhhh------cCCCEEEE
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SD--NNAVV------EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~--~~~~~------~~aDvI~l   77 (276)
                      ..+|.|.|+ |.+|...++-....|.    ++.+. .+++++.+.+++.|+...   .+  ..+.+      +..|+||-
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~----~vi~~-~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccc----cceee-ecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEe
Confidence            468999885 9999999998888887    88888 788899988888775421   11  11111      24677777


Q ss_pred             eeCcccHHHHH
Q 023866           78 SVKPQVDKAAV   88 (276)
Q Consensus        78 av~~~~~~~vl   88 (276)
                      ++..+.+...+
T Consensus       101 ~~g~~~~~~~~  111 (183)
T d1pqwa_         101 SLAGEAIQRGV  111 (183)
T ss_dssp             CCCTHHHHHHH
T ss_pred             cccchHHHHHH
Confidence            66655554444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.017  Score=40.48  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +++.|||.|.+|.-+|..|.+.|.    +|+++ .|+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~----~Vtlv-~~~   54 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS----KTSLM-IRH   54 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc----EEEEE-eec
Confidence            689999999999999999999998    99999 775

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.011  Score=40.82  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ++|.|||.|.+|.-+|..|.+.|.    +|+++ .|.+
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~   55 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT----KVTIL-EGAG   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred             CeEEEECCCccceeeeeeeccccc----EEEEE-Eecc
Confidence            689999999999999999999998    99998 6654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.13  E-value=0.067  Score=41.96  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=27.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      .+.++|.|=|.|++|+..++.|.+.|.    +|+.+
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga----kvv~v   60 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA----KVIAV   60 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC----eEEEe
Confidence            356899999999999999999999998    77644

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.026  Score=44.64  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             eEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| |+ +.+|.++++.|.+.|.    +|.+. +|++++.+.+.+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA----KVALV-DWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            55566 54 8899999999999999    99999 999998776654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.07  E-value=0.0081  Score=48.24  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=31.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      +|.|||+|.-|.++|..|.+.|+    +|.++ +++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~----~v~vl-E~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI----DNVIL-ERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC----CEEEE-CSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCCC
Confidence            79999999999999999999999    99999 98864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.07  E-value=0.024  Score=45.71  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |+.+|  |.|.+|.++++.|.+.|+    +|++. +|+.++.+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga----~Vii~-~r~~~~l~~~~   66 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA----QCVIA-SRKMDVLKATA   66 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHH
Confidence            66766  679999999999999999    99999 99998876544

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.01  E-value=0.047  Score=40.99  Aligned_cols=67  Identities=19%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHHH----cC--ceeccCchhhhcCCCE
Q 023866            8 AESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFES----IG--VKVLSDNNAVVEYSDV   74 (276)
Q Consensus         8 ~~~~kIgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~----~g--~~~~~~~~~~~~~aDv   74 (276)
                      .+..||+|||=  -++..+++..+.+-|.    +++++ .+.     ++-.+.+++    .|  +.++++..++++++|+
T Consensus         3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~----~l~l~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           3 LHDISYAYLGDARNNMGNSLLLIGAKLGM----DVRIA-APKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHHHcCC----EEEEE-ccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccE
Confidence            45689999994  4899999999999998    99998 542     333333332    33  5577888999999999


Q ss_pred             EEEee
Q 023866           75 VVFSV   79 (276)
Q Consensus        75 I~lav   79 (276)
                      |..-+
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88755

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.99  E-value=0.015  Score=46.01  Aligned_cols=41  Identities=24%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             CeEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      -|+++| |+ +.||.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga----~V~~~-~r~~~~l~~~~~   52 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVS----HVICI-SRTQKSCDSVVD   52 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS----EEEEE-ESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHH
Confidence            466666 55 7899999999999999    99999 999988876654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.95  E-value=0.0022  Score=50.10  Aligned_cols=24  Identities=25%  Similarity=0.184  Sum_probs=23.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGV   34 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~   34 (276)
                      |||.|||+|.+|.+.|..|.++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~   24 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYH   24 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC
Confidence            799999999999999999999997

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.06  Score=39.28  Aligned_cols=66  Identities=20%  Similarity=0.232  Sum_probs=48.8

Q ss_pred             CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHH----HHc--CceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAF----ESI--GVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l----~~~--g~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|||=  .++-.+++..+.+-|.    +++++ ...     ++-.+..    .+.  .+..++++.++++++|+|
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~----~i~~~-~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM----NFVAC-GPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEE-SCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEe-cchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhhe
Confidence            4679999994  5899999999999998    99988 542     2222222    222  355678889999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.93  E-value=0.019  Score=42.55  Aligned_cols=73  Identities=14%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhh------hcCCCEEEEeeCcc
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV------VEYSDVVVFSVKPQ   82 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~------~~~aDvI~lav~~~   82 (276)
                      ..+|.|.|+ |.+|...++.....|.    +|++. ++++++.+.+++.|+...-+..+.      -..+|+||=++.+ 
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~----~vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~-  101 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGL----RVLAA-ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK-  101 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT-
T ss_pred             CCEEEEEeccccchhhhhhhhccccc----ccccc-cccccccccccccccceeeehhhhhhhhhccccccccccccch-
Confidence            468999995 9999988887777887    88888 888999999988887432222111      2357777776642 


Q ss_pred             cHHHHH
Q 023866           83 VDKAAV   88 (276)
Q Consensus        83 ~~~~vl   88 (276)
                      .+...+
T Consensus       102 ~~~~~~  107 (171)
T d1iz0a2         102 EVEESL  107 (171)
T ss_dssp             THHHHH
T ss_pred             hHHHHH
Confidence            344433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.93  E-value=0.016  Score=40.45  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++|.|||.|.+|.-+|..|.+.|.    +|+++ ++++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~----~Vtli-~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV----HVSLV-ETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc----eEEEE-eecc
Confidence            4789999999999999999999998    99998 6654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.90  E-value=0.013  Score=46.63  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +||.|||+|.-|.+-|..|.++|+    +|+++ ++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~----~V~vl-E~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL----NVTVF-EAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC----EEEEE-CSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC----CEEEE-eCCC
Confidence            789999999999999999999999    99999 8753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.02  Score=45.03  Aligned_cols=40  Identities=15%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| | .+.||.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~----~Vv~~-~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA----KVIGT-ATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHH
Confidence            56666 5 58899999999999999    99999 999999887765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.88  E-value=0.012  Score=46.72  Aligned_cols=32  Identities=25%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      -|.|||+|.+|.+.|..|.+.|+    +|+++ +++.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~----~V~vl-E~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK----NTALF-ESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCC
Confidence            39999999999999999999998    99999 8864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.028  Score=40.59  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      .+.+++.|||.|.+|..-++.|+++|-    +|+++ +.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA----~VtVv-ap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eC
Confidence            467899999999999999999999998    99988 54

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.73  E-value=0.023  Score=45.21  Aligned_cols=41  Identities=12%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      -|+++|  |.+.+|.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   47 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGA----KVTIT-GRHAERLEETRQ   47 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            367777  568999999999999999    99999 999988876654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.02  Score=45.66  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=37.8

Q ss_pred             CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |...+.+++-|.|+ +.||.++|+.|.+.|+    +|++. +|++++++.+.+
T Consensus         9 ~~~L~GK~alITGassGIG~aiA~~la~~G~----~Vil~-~r~~~~l~~~~~   56 (269)
T d1xu9a_           9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGA----HVVVT-ARSKETLQKVVS   56 (269)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            33345566666666 6799999999999999    99999 999999887654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.025  Score=44.56  Aligned_cols=40  Identities=18%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             eEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| |+ +.||.+++..|.++|.    +|.++ +|++++++.+.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~----~V~l~-~r~~~~l~~~~~   49 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETAA   49 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555 65 6799999999999999    99999 999999887755

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.031  Score=35.60  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG   58 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g   58 (276)
                      .+..+|-|.|. |.+|....+-+...|.    +|++. .+++++.+.+++.|
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~----~Vi~~-t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGY----QVVAV-SGRESTHEYLKSLG   76 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCGGGHHHHHHHT
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCC----eEEEE-ECCHHHHHHHHHCC
Confidence            34568888866 9999999887788898    99988 89999999988766

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.66  E-value=0.025  Score=44.51  Aligned_cols=40  Identities=13%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             eEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| |+ +.+|.++++.|.+.|+    +|.+. +|++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~   48 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA----KVVFG-DILDEEGKAMAA   48 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            55555 55 8899999999999999    99999 999999887765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.026  Score=44.66  Aligned_cols=42  Identities=17%  Similarity=0.298  Sum_probs=35.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+-|-|+ +.||.++++.|.+.|.    +|.++ +|++++++.+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~   48 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQ   48 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            344455555 8999999999999999    99999 999999888776

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.63  E-value=0.021  Score=39.85  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +.++|.|||.|.+|.-+|..|.+.|.    +|+++ .+.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~----~Vtli-e~~   62 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK----KVTVI-DIL   62 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce----EEEEE-Eec
Confidence            35799999999999999999999998    99998 664

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.61  E-value=0.026  Score=44.84  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+-|.|+ +.||.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGT----AIALL-DMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            34444455 7899999999999999    99999 999988876654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.61  E-value=0.025  Score=39.17  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      .+|.|||.|.+|.=+|..|.+.|.    +|++. .++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~----~Vtiv-~~~   54 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGA----EVTVL-EAM   54 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCC----ceEEE-Eee
Confidence            789999999999999999999998    99988 543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.61  E-value=0.026  Score=44.79  Aligned_cols=42  Identities=17%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+-|-|+ +.||.++++.|.+.|+    +|.++ +|++++++++.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   50 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA----SVYTC-SRNQKELNDCLT   50 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            344444455 7899999999999999    99999 999998876654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.60  E-value=0.016  Score=44.84  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=29.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~   49 (276)
                      +||+|||+|.-|.+-|..|.++  |+    +|+++ ++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~----~V~v~-e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA----HVDIY-EKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC----EEEEE-CSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC----eEEEE-eCCCC
Confidence            6999999999999999999876  66    89999 88753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.59  E-value=0.016  Score=44.83  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +||.|||+|.-|.+.|..|.++|+   .+|+|+ ++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~---~~V~vl-E~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGI---TDLLIL-EATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTC---CCEEEE-CSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCC---CcEEEE-ECCC
Confidence            589999999999999999999995   169999 8764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.58  E-value=0.024  Score=40.16  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..+|.|||.|.+|.-+|..|.+.|.    +|+++ ++.+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~----~Vtvi-e~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM----HVTLL-DTAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc----ceeee-eecc
Confidence            4789999999999999999999998    99998 7653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.019  Score=45.20  Aligned_cols=41  Identities=15%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      -|+++|  |.+.+|.++++.|.+.|+    +|++. +|+.++++.+.+
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~   47 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAK   47 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHH
Confidence            366666  558899999999999999    99999 999888776654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.028  Score=44.20  Aligned_cols=43  Identities=12%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|.|+ +.||.++++.|.+.|+    +|.+. +|++++++.+.+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~l~~~~~   49 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA----RVVAV-SRTQADLDSLVR   49 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHH
Confidence            3455666655 8899999999999999    99999 999999888766

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.53  E-value=0.028  Score=44.98  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| | .+.||.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga----~V~l~-~r~~~~l~~~~~   47 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA----NVTIT-GRSSERLEETRQ   47 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555 4 58899999999999999    99999 999998876654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.068  Score=39.42  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=51.3

Q ss_pred             CCeEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec---cC--chhhh------cCCCEEEE
Q 023866           10 SFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SD--NNAVV------EYSDVVVF   77 (276)
Q Consensus        10 ~~kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~---~~--~~~~~------~~aDvI~l   77 (276)
                      ..+|.|+ |.|.+|...++-....|.    +|++. ++++++.+.+++.|+...   .+  ..+.+      ...|+||-
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga----~Vi~~-~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d  103 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA----KLIGT-VGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYD  103 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC----eEeec-ccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEe
Confidence            4689999 556699988887777787    99999 999999999988876421   11  11111      23577777


Q ss_pred             eeCcccHHHHHHH
Q 023866           78 SVKPQVDKAAVIT   90 (276)
Q Consensus        78 av~~~~~~~vl~~   90 (276)
                      ++..+.+...+.-
T Consensus       104 ~~g~~~~~~~~~~  116 (179)
T d1qora2         104 SVGRDTWERSLDC  116 (179)
T ss_dssp             CSCGGGHHHHHHT
T ss_pred             CccHHHHHHHHHH
Confidence            7765555554443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.49  E-value=0.016  Score=46.19  Aligned_cols=68  Identities=21%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH------HHHHH---HcCceec-cC------chhhhcC
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR------RDAFE---SIGVKVL-SD------NNAVVEY   71 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~------~~~l~---~~g~~~~-~~------~~~~~~~   71 (276)
                      .++||.|+|+ |.+|+.++..|+++|+    +|++. +|++..      .+.+.   ..++.+. .+      ..+..+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~----~V~~l-~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   76 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN   76 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-ECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhh
Confidence            4689999986 9999999999999999    99998 886432      22222   2454432 11      2344678


Q ss_pred             CCEEEEeeCc
Q 023866           72 SDVVVFSVKP   81 (276)
Q Consensus        72 aDvI~lav~~   81 (276)
                      +|.++.+...
T Consensus        77 ~~~vi~~~~~   86 (307)
T d1qyca_          77 VDVVISTVGS   86 (307)
T ss_dssp             CSEEEECCCG
T ss_pred             ceeeeecccc
Confidence            8988887754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.49  E-value=0.028  Score=43.64  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ...++|.|||+|.-|...|..|.+.|+    +|+++ +++.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~----~v~l~-E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY----TVHLT-DTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc----ceeeE-eeccc
Confidence            356899999999999999999999999    99999 87653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.44  E-value=0.034  Score=43.98  Aligned_cols=40  Identities=13%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| | .+.||.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~   48 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA----KVAFS-DINEAAGQQLAA   48 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555 5 57899999999999999    99999 999998887765

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.43  E-value=0.016  Score=45.74  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      ++|.|||+|.-|.++|..|.+.|.   .+|.|+ +|+++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi---~~V~V~-Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGI---GKVTLL-ESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CeEEEE-eCCCC
Confidence            689999999999999999999993   178898 88653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.43  E-value=0.03  Score=44.89  Aligned_cols=41  Identities=10%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +++-|-|+ +.||.++++.|.+.|.    +|.++ +|++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~   47 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA----KVAVL-DKSAERLAELET   47 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            44445554 8999999999999999    99999 999998877665

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.40  E-value=0.031  Score=44.10  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=34.2

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+|  |.+.||.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA----KVMIT-GRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            56666  468899999999999999    99999 999998877655

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.021  Score=44.96  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..||.|||+|.+|+.++..|.+.|.   .+++++ |.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCc
Confidence            4689999999999999999999997   578888 654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.018  Score=45.34  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+|  |.+.+|.++++.|.+.|+    +|.+. +|++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~----~Vi~~-~r~~~~l~~~~~   48 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA----KVIAT-DINESKLQELEK   48 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHGGGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHh
Confidence            56666  669999999999999999    99999 999988877666

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.033  Score=45.72  Aligned_cols=31  Identities=10%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      |||.|+|+ |-+|+.++..|++.|+    +|++. ||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~----~V~~~-d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH----DVIIL-DN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence            78999966 9999999999999999    99987 65

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.031  Score=44.22  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+|  |.+.+|.++++.|.+.|+    +|.+. +|++++++.+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~   53 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGA----SVVVS-DINADAANHVVD   53 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            67777  568999999999999999    99999 999988776554

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.33  E-value=0.036  Score=39.26  Aligned_cols=90  Identities=13%  Similarity=0.073  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHhcCCCCchHHHHHHHH-------
Q 023866          186 AYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKS---GKHPGQLKDDVASPGGTTIAGIHEL-------  252 (276)
Q Consensus       186 ~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~---~~~~~~l~~~v~sp~g~t~~~l~~l-------  252 (276)
                      .+++..+.++.|+   +.+.|+|.+..++++..+..++..+-...   ..-+..+.+....|+++.....+++       
T Consensus        14 ~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~a   93 (134)
T d3cuma1          14 QLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAA   93 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHHHHHHHHHHHHH
Confidence            3445556666666   56999999999999998887766554321   1123445566678888877776654       


Q ss_pred             HhCChHHHHHHHHHHHHHHHhhc
Q 023866          253 EKSGFRGILMNAVVAAAKRSREL  275 (276)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~r~~~~  275 (276)
                      ++.+++-.+.++..+.|+++.+.
T Consensus        94 ~~~g~~~p~~~~a~~~~~~a~~~  116 (134)
T d3cuma1          94 QASASSTPMGSLALSLYRLLLKQ  116 (134)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCChHHHHHHHHHHHHHHc
Confidence            45588888888888888887764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.32  E-value=0.021  Score=39.83  Aligned_cols=32  Identities=19%  Similarity=0.043  Sum_probs=29.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      .++.|||.|.+|.-+|..|.+.|.    +|+++ .|+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~----~Vtii-~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL----DVTVM-VRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC----eEEEE-Eec
Confidence            589999999999999999999998    99998 665

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.27  E-value=0.034  Score=44.49  Aligned_cols=40  Identities=20%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+|  |.+.||.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   46 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA----QVTIT-GRNEDRLEETKQ   46 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555  458899999999999999    99999 999988776654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.20  E-value=0.037  Score=43.70  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      +.+.+-|-|+ +.||.++++.|.+.|+    +|.+. +|++++.++..
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~   46 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC----SVVVA-SRNLEEASEAA   46 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence            3444445555 7899999999999999    99999 99998876544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.19  E-value=0.037  Score=43.39  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=35.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|-|+ +.+|.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~l~~~~~   47 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA----RLVAC-DIEEGPLREAAE   47 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            3344445554 7899999999999999    99999 999999887765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.12  E-value=0.055  Score=42.79  Aligned_cols=44  Identities=20%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+++-|.| .+.||.++++.|++.|+    +|.++ +|++++++.+.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~----~V~i~-~r~~~~l~~~~~   48 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA----RVYTC-SRNEKELDECLE   48 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            3456677776 58899999999999999    99999 999988776544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.06  E-value=0.036  Score=43.88  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| | .+.||.++++.|.+.|+    +|.++ +|++++++.+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA----RVAIA-DINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            55555 4 48999999999999999    99999 999998887665

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.97  E-value=0.043  Score=43.49  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=33.1

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.+| | .+.||.++++.|.+.|.    +|.++ +|++++++++.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~l~~~~~   50 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGA----VIHTC-ARNEYELNECLS   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            45555 4 57899999999999999    99999 999988876654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.036  Score=44.51  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +..||.|||+|.=|.+-|..|.++|+    +|+|+ .++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~----~V~Vl-Ea~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM----DVTLL-EAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC----CEEEE-eCC
Confidence            56789999999999999999999999    99999 765

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.94  E-value=0.1  Score=37.71  Aligned_cols=66  Identities=17%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHHHcC--ceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESIG--VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~la   78 (276)
                      +..||+|||=   ++...+++..+.+-|.    +++++ ...     ++..+.+.+.+  +..+.++.++++++|+|..-
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~   77 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV----ELYLI-SPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT   77 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC----cEEEE-ccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEee
Confidence            4679999998   6899999999998888    88887 442     33344454433  45678899999999987765


Q ss_pred             e
Q 023866           79 V   79 (276)
Q Consensus        79 v   79 (276)
                      .
T Consensus        78 ~   78 (157)
T d1ml4a2          78 R   78 (157)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.022  Score=46.17  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |..|.|||+|.-|.+.|..|.+.|+    +|.++ +++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~----~V~ii-Ek~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK----KVLVI-EKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC----CEEEE-CSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC----cEEEE-ECCC
Confidence            4579999999999999999999998    99999 7753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.91  E-value=0.044  Score=43.32  Aligned_cols=43  Identities=14%  Similarity=0.122  Sum_probs=35.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+++-|.|+ +.||.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~   47 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATAR   47 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            3445555555 6899999999999999    99999 999998877655

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.88  E-value=0.028  Score=42.64  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA   53 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~   53 (276)
                      +||-+||.|.-|..++.+|.+.|. ..-+.+.. |.+.+.++.
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~~   41 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGI-HGVEFVAV-NTDLQVLEA   41 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCC-TTEEEEEE-ESCHHHHHT
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCC-CceEEEEE-cCCHHHHhc
Confidence            589999999999999999999875 32345555 887776653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.031  Score=45.40  Aligned_cols=64  Identities=9%  Similarity=0.105  Sum_probs=41.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH----cCceec--cCchhhhcCCCEEEEe
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES----IGVKVL--SDNNAVVEYSDVVVFS   78 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~----~g~~~~--~~~~~~~~~aDvI~la   78 (276)
                      ++||.|.|+ |-+|+.++..|++.|+    +|+++ ++. ..+.+.+..    ..+.+.  +....+..++|+||=+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH----EVTVV-DNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            478999966 9999999999999999    99988 652 222222222    122222  1223345679999843

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.049  Score=42.68  Aligned_cols=42  Identities=12%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+++-|.|+ +.+|.++++.|.+.|+    +|.+. +|++++++.+.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~   47 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA----KVVAV-TRTNSDLVSLAK   47 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            355556665 7899999999999999    99999 999998887765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.79  E-value=0.033  Score=38.21  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++.|||.|..|.-+|..|.+.|.    +|+++ .+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~----~Vtlv-e~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA----QVSVV-EARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc----ceEEE-eeec
Confidence            689999999999999999999998    99998 6653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.79  E-value=0.024  Score=46.10  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=32.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      +...|.|||+|.-|.++|..|.+.|+    ++.++ +++++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~----~v~i~-Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGR----SVHVI-ETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC----CEEEE-EcCCC
Confidence            45789999999999999999999999    99999 88754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.77  E-value=0.032  Score=44.82  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .+|.|||+|.+|.+.|..|.+.|.   .+|+++ +|++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~---~~V~li-E~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGW---NNITVL-DQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-CSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCC---CcEEEE-eCCC
Confidence            579999999999999999999985   169999 8863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.072  Score=43.04  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+.+-|.|+ +.||.++++.|.+.|+    +|.+. +|++++++...+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga----~Vvi~-~r~~~~l~~~~~   54 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS----NVVIA-SRKLERLKSAAD   54 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            34444555554 7899999999999999    99999 999988776543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.69  E-value=0.053  Score=42.42  Aligned_cols=42  Identities=10%  Similarity=0.081  Sum_probs=34.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+++-|.|+ +.+|.++++.|.+.|+    +|++. +|+.++++.+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~   47 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA----SLVAV-DREERLLAEAVA   47 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            344555565 6799999999999999    99999 999988876655

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.034  Score=45.57  Aligned_cols=65  Identities=12%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee-----ccC--ch-hhhcCCCEEEEee
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-----LSD--NN-AVVEYSDVVVFSV   79 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~-----~~~--~~-~~~~~aDvI~lav   79 (276)
                      |||-|.|+ |-+|+.+++.|++.|+   .+|++. |+...+...+.. .+++.     ...  .. .+.+++|+||-+.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~---~~V~~l-d~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a   75 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC---CEEEEE-eCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence            79999966 9999999999999985   278888 776555444433 33332     111  11 2456799999865

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.067  Score=39.27  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+.++|.|||-+. +|.+++.-|.+.|.    .|+++ +....              +..+.++++|+||.++-
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga----tVt~~-h~~t~--------------~l~~~~~~ADivI~a~G   89 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFTK--------------NLRHHVENADLLIVAVG   89 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSCS--------------CHHHHHHHCSEEEECSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc----ccccc-ccccc--------------hhHHHHhhhhHhhhhcc
Confidence            3568999999976 99999999998887    89988 65432              33455788999999984

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.47  E-value=0.025  Score=44.72  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |||.|.|+ |-+|+.+++.|.+.||    +|+.. +|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~----~Vi~~-~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV----EVIPT-DVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE----EEEEE-CTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC----EEEEe-echh
Confidence            79999987 9999999999999999    99998 8863

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.45  E-value=0.048  Score=37.55  Aligned_cols=34  Identities=15%  Similarity=0.048  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++|.|||.|.+|.=+|..|.+.|.    +|+++ .|++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~----~vt~i-~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR----RTVML-VRTE   55 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch----hheEe-eccc
Confidence            3799999999999999999999998    99998 7654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.37  E-value=0.089  Score=41.70  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=35.2

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .+.+.+-|.| .+.+|.++++.|.+.|.    +|.+. +|++++++.+.+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~   48 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA----KVVIA-DIADDHGQKVCN   48 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence            3444444445 57899999999999999    99999 999998887665

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.36  E-value=0.032  Score=43.76  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |||.+| | .+.||.++++.|.+.|+    +|.+. +|+.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga----~V~~~-~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH----QIVGI-DIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECChH
Confidence            677777 4 58899999999999999    99988 77653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.06  Score=42.89  Aligned_cols=42  Identities=10%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             CCeEEEE--cccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           10 SFILGFI--GAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiI--G~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      .++|++|  |.+.+|.++++.|.+. |.    +|+++ +|++++.+.+.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~----~Vi~~-~r~~~~~~~~~~   46 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG----DVVLT-ARDVTRGQAAVQ   46 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS----EEEEE-ESSHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHH
Confidence            4789999  7799999999999875 77    89999 999998876554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.15  E-value=0.14  Score=40.58  Aligned_cols=39  Identities=10%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHH
Q 023866           12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFE   55 (276)
Q Consensus        12 kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~   55 (276)
                      |+.+| | .+.+|.++++.|.+.|+    +|.+. +|+ ++.++.+.
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga----~Vvi~-~~~~~~~~~~~~   60 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGC----KVIVN-YANSTESAEEVV   60 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCchHHHHHHH
Confidence            55555 5 69999999999999999    99988 555 55555443

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.12  E-value=0.044  Score=42.01  Aligned_cols=44  Identities=7%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      ...||.+||+|.-|..++..|.+.|. ..-+.+.+ |.+.+.+...
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~~~   57 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGI-EGAKTVAI-NTDAQQLIRT   57 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTC-TTEEEEEE-ESBHHHHHTS
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCC-CceEEEEE-eCCHHHHhcC
Confidence            35799999999999999999999885 33345566 7777766543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.10  E-value=0.05  Score=39.63  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=30.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      -+||.|||.|..|..+|..|.+.+.  ..+|+++ ++++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~--~~~Vtli-e~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADP--SIEVTLI-EPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT--TSEEEEE-CSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCC--CCcEEEE-ECCC
Confidence            3699999999999999999998874  3378888 7765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.07  E-value=0.04  Score=38.38  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++.|||.|.+|.=+|..|.+.|.    +|++. .|++
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~----~Vtvi-~~~~   58 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS----EVTVV-EFAS   58 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC----eEEEE-EEcc
Confidence            689999999999999999999998    99998 7754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.05  E-value=0.039  Score=41.47  Aligned_cols=34  Identities=6%  Similarity=-0.047  Sum_probs=28.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |||.|||.|..|..+|..|.+.+.  ..+|+++ +|+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~--~~~V~v~-~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHP--DAEIQWY-EKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT--TSEEEEE-ESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCC--CCeEEEE-eCC
Confidence            799999999999999999987642  2378888 765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=0.09  Score=41.37  Aligned_cols=41  Identities=12%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             CeEEEE-cc-cHHHHHHHHHHHh---CCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI-GA-GKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI-G~-G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      -||+|| |+ +.+|.++++.|.+   .|+    +|+++ +|++++++.+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~----~Vv~~-~r~~~~l~~~~~   51 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS----VMLVS-ARSESMLRQLKE   51 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC----EEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC----EEEEE-ECCHHHHHHHHH
Confidence            588998 55 7899999999975   688    99999 999998877654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.81  E-value=0.29  Score=39.16  Aligned_cols=71  Identities=8%  Similarity=0.096  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeC----------CCHHHHHHHHHcCcee------ccCchhhh-c
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFESIGVKV------LSDNNAVV-E   70 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~~g~~~------~~~~~~~~-~   70 (276)
                      .+.++|.|=|.|++|...|+.|.+.|.    +|+.+.|          .+.+.+..+....-.+      ..++.++. .
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga----kvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA----KCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEV  109 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccC
Confidence            466899999999999999999999998    7664413          3445555555421111      01122333 4


Q ss_pred             CCCEEEEeeCcc
Q 023866           71 YSDVVVFSVKPQ   82 (276)
Q Consensus        71 ~aDvI~lav~~~   82 (276)
                      +|||+|.|-...
T Consensus       110 ~~DIliPaA~~~  121 (293)
T d1hwxa1         110 DCDILIPAASEK  121 (293)
T ss_dssp             CCSEEEECSSSS
T ss_pred             CccEEeeccccc
Confidence            899999986443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.14  Score=37.69  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      .+.++|.|||-+. +|.+++.-|.+.|.    .|+++ +.+..              +..+.++++|+||.++.
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga----tVt~~-~~~t~--------------~l~~~~~~aDivi~a~G   91 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSKTA--------------HLDEEVNKGDILVVATG   91 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTCS--------------SHHHHHTTCSEEEECCC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC----ceEEE-ecccc--------------cHHHHHhhccchhhccc
Confidence            3568899999965 89999999999887    89988 65432              23345778999999985

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.72  E-value=0.087  Score=41.34  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG   58 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g   58 (276)
                      +.+-|-| .+.||.++++.|.+.|+    +|.+. +|+++..+..++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~----~V~~~-~~~~~~~~~~~~~~   49 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA----LVALC-DLRPEGKEVAEAIG   49 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSTTHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcC
Confidence            3444445 68999999999999999    99999 99987765554444

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.65  E-value=0.056  Score=42.74  Aligned_cols=40  Identities=10%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      -|+.+|  |.+.+|.++++.|.+.|+    +|.+. +|++++.+++.
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~   50 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA----NVAVI-YRSAADAVEVT   50 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCTTHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHH
Confidence            356666  457899999999999999    99999 89887765543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.55  E-value=0.066  Score=37.37  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .++.|||.|.+|.=+|..|.+.|.    +|+++ .+.+
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~----~Vtiv-e~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS----RLDVV-EMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC----EEEEE-Eeec
Confidence            689999999999999999999998    99998 7654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.51  E-value=0.11  Score=40.91  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=31.3

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFE   55 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~   55 (276)
                      -|+.+|  |.+.||.++++.|.+.|+    +|.+. +|+ ++.++.+.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~~~~~~~   46 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA----DIVLN-GFGDAAEIEKVR   46 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-CCSCHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHHH
Confidence            356666  557899999999999999    99999 886 45555543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.11  Score=40.19  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +.+++-|.|+ +.||.++++.|.+.|+    +|.+. +|+++.++..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga----~V~~~-~r~~~~l~~~   44 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA----EVTIC-ARNEELLKRS   44 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHhc
Confidence            4556666765 7899999999999999    99999 9998776543

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.44  E-value=0.096  Score=37.82  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      +.+||+|||=   +++..+++..+.+-|.    ++.++ .+.  .... .+..+.+..+..++++++|+|..-
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~----~~~i~-~P~--~~~~-~~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA----RVLFS-GPS--EWQD-EENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCC----ccccc-CCc--hhhc-cccceeEEEechhccccCceeeee
Confidence            3589999997   6899999999999998    88877 543  2211 123455667888999999998764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.30  E-value=0.14  Score=36.92  Aligned_cols=66  Identities=14%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      +..||+|||=   +++..+++..+.+-|.    ++.++......  ..+.+..  ..+..++++.++++++|+|..-
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP----KLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC----SEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC----eeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            4689999997   4589999999998887    66544132211  1122222  3456678899999999988754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.29  E-value=0.066  Score=42.31  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |.|||+|..|.+.|..|.++|+    +|.++ ++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~----~V~vi-E~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV----KTLLV-DAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC----CEEEE-CSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC----cEEEE-eCC
Confidence            7899999999999999999999    99999 774

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.08  E-value=0.45  Score=34.43  Aligned_cols=67  Identities=22%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHHH----c--CceeccCchhhhcCCCEE
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFES----I--GVKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~~----~--g~~~~~~~~~~~~~aDvI   75 (276)
                      .+..||+|||-| ++..+++..+.+-|.    +++++ ..     .++-.+.+.+    .  .+..+.+..+++.++|+|
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~advi   76 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA----DVVVA-TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVI   76 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCC----eEEEe-cccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEE
Confidence            367899999974 677889998888888    89887 44     2333343333    1  245677889999999988


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus        77 y~~~   80 (163)
T d1pvva2          77 YTDV   80 (163)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            8654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.98  E-value=0.15  Score=40.03  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=31.9

Q ss_pred             CCCeEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            9 ESFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         9 ~~~kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +.+.+-|. |.+.+|.++++.|.+.|+    +|++.++|+.+..+.+.+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~----~Vvi~~~~~~~~~~~~~~   49 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA----SVVVNYGSSSKAAEEVVA   49 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEcCCChHHHHHHHH
Confidence            33444444 558899999999999999    998753777776665543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.96  E-value=0.11  Score=40.48  Aligned_cols=41  Identities=15%  Similarity=0.157  Sum_probs=33.0

Q ss_pred             CeEEEE-cc-cHHHHHHHHHHHhCCCCCCCe-------EEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI-GA-GKMAESIAKGVAKSGVLPPDR-------ICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI-G~-G~mG~~la~~l~~~g~~~~~~-------V~v~~~r~~~~~~~l~~   56 (276)
                      ++|.+| |+ +.+|.++++.|.++|+    +       |.++ +|++++++.+.+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~----~~~~~~~~v~~~-~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAAR----HHPDFEPVLVLS-SRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTT----TCTTCCEEEEEE-ESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCc----cccccCcEEEEE-eCCHHHHHHHHH
Confidence            466666 55 7899999999999997    5       7777 999998877654

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.24  Score=37.44  Aligned_cols=29  Identities=14%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      |||.|+|.+..|..+...|.+.|+    +|..+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~----~i~~V   29 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGH----EVVGV   29 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC----EEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCC----cEEEE
Confidence            799999999999999999999999    88754

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.89  E-value=0.17  Score=39.97  Aligned_cols=42  Identities=21%  Similarity=0.472  Sum_probs=33.1

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        11 ~kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +-|++|  |.+.||.++++.|.+.|.    +|.+.+.|+++..+.+.+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~~~~~~   45 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGY----AVCLHYHRSAAEANALSA   45 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCCHHHHHHHHH
Confidence            458888  557899999999999999    998863667776665543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.77  E-value=0.46  Score=36.83  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHh-CCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAK-SGV   34 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~-~g~   34 (276)
                      .+.++|.|-|.|++|..+++.|.+ .|.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~   57 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM   57 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc
Confidence            467899999999999999998875 476

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.73  E-value=0.043  Score=42.20  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCC---CCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGV---LPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~---~~~~~V~v~~~r~~   48 (276)
                      .||+|||+|.=|.+-|..|.++||   ....+|+++ ++.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~-E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML-EMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEE-ESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEE-ecCC
Confidence            599999999999999999999884   011279999 8764

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.27  Score=36.39  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHH----HcC--ceeccCchhhhcCCCEE
Q 023866            9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE----SIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         9 ~~~kIgiIG~G--~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~----~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      +..||+|+|=|  +|..+++..+.+-|.    +++++ ...     ++-.+.++    ..|  +..+.+..+++.++|+|
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~----~l~~~-~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvv   78 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGL----DLRLV-APQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFI   78 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCC----EEEEE-CCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEE-echHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEE
Confidence            46899999955  799999999988898    99988 542     12222222    234  44678888999999999


Q ss_pred             EEee
Q 023866           76 VFSV   79 (276)
Q Consensus        76 ~lav   79 (276)
                      ..-+
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8765

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.61  E-value=0.18  Score=39.26  Aligned_cols=41  Identities=12%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      +|.+|  |.+.||.++++.|.+.|+    +|.+.+.|+++.++.+.+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga----~V~i~~~~~~~~~~~~~~   44 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC----KVLVNYARSAKAAEEVSK   44 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHHHH
Confidence            36666  568999999999999999    998753678777766544

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.52  E-value=0.059  Score=36.62  Aligned_cols=70  Identities=7%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             CeEEEEcc----------cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866           11 FILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG~----------G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~   80 (276)
                      ++|||.|+          ..-.--+...|.+.|.    +|.+| |+.-...+  ...+..+..+..+....+|+||+...
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~----~v~iy-DP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI----KIIIY-EPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC----EEEEE-CTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhcccc----ceeee-cCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            48999997          3456678899999998    99999 87643211  12456677788888899998887766


Q ss_pred             cccHHHH
Q 023866           81 PQVDKAA   87 (276)
Q Consensus        81 ~~~~~~v   87 (276)
                      ...+..+
T Consensus        89 ~~~~~~~   95 (108)
T d1dlja3          89 DNELQDV   95 (108)
T ss_dssp             CGGGGGG
T ss_pred             chHHHhc
Confidence            6665544

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.37  Score=36.35  Aligned_cols=32  Identities=9%  Similarity=0.005  Sum_probs=27.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      |||.|+|.+.+|....+.|.++|+    +|..++.+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~----~I~~Vvt~   32 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGY----EISAIFTH   32 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTC----EEEEEECC
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCC----CEEEEEcC
Confidence            799999999999999999999998    88644354

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.61  Score=33.50  Aligned_cols=66  Identities=17%  Similarity=0.275  Sum_probs=46.6

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCeEEEEeCC-----CHHHHHHHHHcC--ceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~---G~mG~~la~~l~~~g~~~~~~V~v~~~r-----~~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~la   78 (276)
                      +..||+|||=   +++..+++..+.+-|.   ..++++ ..     .+...+.++..|  +..+.++.++++++|+|...
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~---~~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~   78 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG---NRFYFI-APDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT   78 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS---CEEEEE-CCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEEC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC---CeEEee-ccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEee
Confidence            5689999997   6699999998877753   155565 33     233344555555  45678889999999998754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.10  E-value=0.12  Score=40.49  Aligned_cols=44  Identities=14%  Similarity=0.110  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcc-cH--HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-HHHHH
Q 023866            8 AESFILGFIGA-GK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~--mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~   56 (276)
                      ++.+++-|.|+ |.  ||.++|+.|.+.|.    +|.+. +|+.++. +.+.+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga----~Vil~-~~~~~~~~~~~~~   51 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA----QLVLT-GFDRLRLIQRITD   51 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC----EEEEE-ECSCHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC----EEEEE-eCChHHHHHHHHH
Confidence            45677888896 54  99999999999999    99998 8887765 44443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.12  Score=39.22  Aligned_cols=34  Identities=9%  Similarity=0.136  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .--|.|||+|.-|...|..|.++|+    +|.|+ ++++
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~----~V~vl-E~~~   38 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGK----KVLHI-DKQD   38 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-cCCC
Confidence            3458999999999999999999999    99999 8864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.93  E-value=0.093  Score=42.88  Aligned_cols=36  Identities=8%  Similarity=-0.052  Sum_probs=32.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      .+||-|.| .|-+|+.++..|++.|+    +|.++ +|+..+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~----~V~~~-~r~~~~   44 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA----TVKGY-SLTAPT   44 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCc
Confidence            58999997 59999999999999999    99999 887654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.85  E-value=0.12  Score=40.30  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |+.++|-|-|+ +.+|.++++.|++.|.  ...|++. .|++++++++++
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~--~~~Vi~~-~R~~~~~~~l~~   47 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKN--IRHIIAT-ARDVEKATELKS   47 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTT--CCEEEEE-ESSGGGCHHHHT
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCC--CCEEEEE-eCCHHHHHHHHH
Confidence            44456666665 8999999999999985  1157777 899998887765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.74  E-value=0.063  Score=44.03  Aligned_cols=31  Identities=13%  Similarity=0.072  Sum_probs=26.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      +||||-|.| +|-+|+.|+..|++.|+    +|.++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~----~v~v~   32 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHP----DVHVT   32 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCT----TCEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCC----CeEEE
Confidence            589999997 59999999999999998    65544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.63  E-value=0.096  Score=42.51  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             eEEEEcccHHHHHHHHHHH-----hCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVA-----KSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~-----~~g~~~~~~V~v~~~r~~   48 (276)
                      -|.|||+|..|.++|..|.     ++|+    +|+++ +|++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~----~v~vl-Er~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL----KVRII-DKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC----CEEEE-CSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC----cEEEE-cCCC
Confidence            4899999999999999985     5798    99999 8864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.62  E-value=0.22  Score=38.20  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866            7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus         7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +....||.|.|+|.-|..+++.|.+.+.   .+++++ ||.
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~---~~i~~~-D~~   59 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRK   59 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETT
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcc---cceEee-cce
Confidence            3466899999999999999999999886   478888 774

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.42  Score=41.67  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..+|.+||+|.+|+-++++|...|.   ..++++ |.+
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GV---g~itiv-D~d   58 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DGN   58 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTC---SEEEEE-CCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcC---CEEEEE-cCC
Confidence            4689999999999999999999996   478887 653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.51  E-value=0.11  Score=40.08  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      -|.|||+|.-|...|..|.++|+    +|.++ ++++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~----~V~li-Ek~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA----NVLLL-DKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCCC
Confidence            48999999999999999999999    99999 98754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.15  Score=39.73  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             CCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +.+++-|.|++   .+|.++|+.|++.|+    +|++. +|+++..+.+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~----~V~i~-~~~~~~~~~~   47 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA----ELAFT-YQNDKLKGRV   47 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC----EEEEE-ESSTTTHHHH
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHH
Confidence            44566666764   488999999999999    99999 8876554443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.37  E-value=0.55  Score=36.21  Aligned_cols=70  Identities=14%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 023866            8 AESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV   68 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~   68 (276)
                      .+.++|.|=|.|++|...++.|.+ .|.    .|+.+.|.          +.+.+..+++ .+       .... ++.++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga----~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~  103 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS----KVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEEL  103 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC----EEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC----ceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccc
Confidence            357899999999999999999864 587    66543132          3344444443 22       1111 23344


Q ss_pred             hc-CCCEEEEeeCcc
Q 023866           69 VE-YSDVVVFSVKPQ   82 (276)
Q Consensus        69 ~~-~aDvI~lav~~~   82 (276)
                      .. +|||++.|-...
T Consensus       104 ~~~~~DI~~PcA~~~  118 (234)
T d1b26a1         104 LELDVDILVPAALEG  118 (234)
T ss_dssp             HTSCCSEEEECSCTT
T ss_pred             cccccceeecchhcc
Confidence            33 789988875443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.36  E-value=0.22  Score=39.16  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=29.6

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAF   54 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l   54 (276)
                      |+.+|  |.+.+|.++++.|.+.|+    +|.+. +|+.+ .++.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~----~Vv~~-~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA----KVVVN-YRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHH
Confidence            56666  458999999999999999    99998 77643 44443

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.26  E-value=0.037  Score=37.47  Aligned_cols=26  Identities=8%  Similarity=0.096  Sum_probs=22.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCC
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGV   34 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~   34 (276)
                      ..++|.|||.|+=|.=++.-|.+.+-
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak   56 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK   56 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999876653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=90.18  E-value=0.19  Score=39.59  Aligned_cols=37  Identities=16%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcc-c--HHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            8 AESFILGFIGA-G--KMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         8 ~~~~kIgiIG~-G--~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      .+.+++-|.|+ |  .||.++|+.|.+.|+    +|++. +|+++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga----~V~i~-~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA----TLAFT-YLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC----EEEEE-ESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHH
Confidence            35567777786 5  499999999999999    99999 88864

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.11  E-value=0.25  Score=38.82  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEE
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT   42 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v   42 (276)
                      .+.++|.|=|.|++|...++.|.+.|.    +|+.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga----kvva   64 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA----KAVT   64 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC----EEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC----eEEE
Confidence            356899999999999999999999998    7653

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.02  E-value=0.26  Score=37.13  Aligned_cols=40  Identities=8%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA   53 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~   53 (276)
                      +|-|||.|..|..++..|.+.+. ..-+.+.+ |.+.+.+..
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~-~~v~~iai-nTD~~~L~~   42 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGL-KGVEFIAI-NTDAQALLM   42 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESCHHHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCC-CCceEEEE-cchHHHHhc
Confidence            68899999999999999999885 33345555 777666554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.02  E-value=0.045  Score=41.53  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      .+||.|.|+ |.+|+.+++.|++.|+.  .+|... .|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~--~~v~~~-~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTL--AKVIAP-ARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTC--CEEECC-BSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCe--EEEEEE-eCCc
Confidence            379999988 99999999999999971  145544 5543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.12  Score=41.57  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |.|||+|.-|.+-|..|.++|+    +|+|+ +++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~----~V~Vl-E~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL----NVVVL-EAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence            7899999999999999999999    99998 753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.93  E-value=0.32  Score=35.72  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=52.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--c-c--Cchh-hh-----cCCCEEE
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--L-S--DNNA-VV-----EYSDVVV   76 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~-~--~~~~-~~-----~~aDvI~   76 (276)
                      ...+|-|.|+ |.+|.+.++-....|.    +|+.. .+++++.+.+++.|...  . .  +..+ +.     ...|+||
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga----~vi~~-~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~  103 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF  103 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCC----EEEEe-CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeE
Confidence            3467888888 7788888887777787    99988 89999999998877542  1 1  1111 11     2478888


Q ss_pred             EeeCcccHHHHHHH
Q 023866           77 FSVKPQVDKAAVIT   90 (276)
Q Consensus        77 lav~~~~~~~vl~~   90 (276)
                      =++-.+.+.+.+.-
T Consensus       104 D~vG~~~~~~~~~~  117 (182)
T d1v3va2         104 DNVGGEFLNTVLSQ  117 (182)
T ss_dssp             ESSCHHHHHHHGGG
T ss_pred             EecCchhhhhhhhh
Confidence            77765555544433

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.91  E-value=0.15  Score=37.32  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=22.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSG   33 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g   33 (276)
                      .++.+|+++|+|++|+.+++.|.+..
T Consensus         2 ~k~i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           2 TKVVNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEEeCCHHHHHHHHHHHHhH
Confidence            35678999999999999999888654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=89.82  E-value=0.15  Score=37.51  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=31.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~   56 (276)
                      |||||=|.|++|+.+.+.|...++    +|..++|.. .+....|-+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i----~iv~INd~~~~~~~ayLl~   43 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGV----EVALINDLTDNKTLAHLLK   43 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSCHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCC----EEEEECCCcchhhhhheee
Confidence            699999999999999999998887    887774442 334444444

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=89.77  E-value=0.17  Score=40.75  Aligned_cols=29  Identities=17%  Similarity=0.245  Sum_probs=25.7

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeC
Q 023866           12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVH   45 (276)
Q Consensus        12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~   45 (276)
                      ||-|.|+ |-+|+.+++.|++.|+    +|+++ |
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~----~V~~i-d   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI----DLIVF-D   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC----EEEEE-E
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC----EEEEE-E
Confidence            7878855 9999999999999999    99987 5

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.58  E-value=0.16  Score=36.48  Aligned_cols=30  Identities=13%  Similarity=0.216  Sum_probs=26.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ||.|||.|..|.-+|..|.+ +.    +|+++ ++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~----~Vtvv-~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY----EVTVI-DKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC----CEEEE-ecc
Confidence            89999999999999998864 66    89998 764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.52  E-value=0.11  Score=40.45  Aligned_cols=41  Identities=22%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      ...|-|||+|.-|..-|..|.+.|+    +|.++ +++++--..+.
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~----~V~vl-Ek~~~~G~k~~   44 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK----SVTVF-DNGKKIGRKIL   44 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSSSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCCceE
Confidence            4569999999999999999999998    99999 98875444433

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.52  E-value=0.18  Score=39.36  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             eEEEE-cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        12 kIgiI-G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      |+++| |+ +.||.++++.|.+.|+    +|.+. +|+++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga----~V~~~-~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA----DIAIA-DLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCch
Confidence            45555 54 7899999999999999    99999 88764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.32  E-value=0.29  Score=38.15  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             CCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +.+++-|-|++   .+|.++++.|.+.|+    +|.+. +|+++..+..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga----~V~i~-~~~~~~~~~~   50 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA----EVALS-YQAERLRPEA   50 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHH
Confidence            44566666864   599999999999999    99988 8886554433

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.15  Score=41.36  Aligned_cols=33  Identities=12%  Similarity=0.130  Sum_probs=27.8

Q ss_pred             CeEE-EEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILG-FIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIg-iIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +||+ |.| +|-+|+.++..|++.||    +|++. +|.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i-~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGI-VRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence            5895 555 59999999999999999    99998 7754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.25  E-value=0.26  Score=39.98  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      ++.++|-|.|+ |-+|+.++..|.+.|+    +|++. ||
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~----~V~~~-d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence            34568888865 9999999999999999    99988 65

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.17  E-value=0.13  Score=39.59  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      |+++|  |.+.||.++++.|.+.|+    +|.+. +|+++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga----~V~i~-~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY----RVVVL-DLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC----EEEEE-ESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCccc
Confidence            55666  458999999999999999    99999 887653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.86  E-value=0.15  Score=37.23  Aligned_cols=30  Identities=20%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      ..+|.|||.|..|.-+|..|.+.|.    ++++.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~----~v~v~   32 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW----EGNIR   32 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC----CSEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC----ceEEE
Confidence            4689999999999999999999987    65554

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.49  E-value=0.43  Score=35.02  Aligned_cols=47  Identities=13%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeC-CCHHHHHHHHH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFES   56 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~   56 (276)
                      .+||||=|.|++|+.+.+.+++.+.-+.-+|....+ .+++....|-+
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk   48 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR   48 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence            379999999999999999988654212225555534 34555555544

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=88.47  E-value=0.25  Score=38.72  Aligned_cols=54  Identities=11%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEe
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS   78 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~la   78 (276)
                      ...||++||.  +  ++...+.+.|.    +++++ +|+++       .|........+++.+||+||+.
T Consensus       121 ~g~kV~vIG~--~--P~v~~l~~~~~----~~~Vl-E~~p~-------~gd~p~~~~~~lLp~aD~viiT  174 (251)
T d2h1qa1         121 KGKKVGVVGH--F--PHLESLLEPIC----DLSIL-EWSPE-------EGDYPLPASEFILPECDYVYIT  174 (251)
T ss_dssp             TTSEEEEESC--C--TTHHHHHTTTS----EEEEE-ESSCC-------TTCEEGGGHHHHGGGCSEEEEE
T ss_pred             CCCEEEEEec--c--hhHHHHHhcCC----cEEEE-eCCCC-------CCCCCchHHHHhhhcCCEEEEE
Confidence            3579999986  5  56777888887    99999 99874       3433334556788899999987

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.21  E-value=0.35  Score=38.33  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=34.1

Q ss_pred             CCCCCCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866            4 FPIPAESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus         4 ~~~~~~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      .|-.++.+++-|-|++   .+|.++++.|.+.|.    +|.+. +|+++.
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga----~Vvi~-~~~~~~   46 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA----EILVG-TWVPAL   46 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-EEHHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCchhh
Confidence            3555667788888985   599999999999999    99998 887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.92  E-value=0.31  Score=37.94  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             EEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866           13 LGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR   50 (276)
Q Consensus        13 IgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~   50 (276)
                      +++|  |.+.+|.++++.|+++|+    +|++. +|+.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~----~Vvi~-~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF----RVVVH-YRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCchH
Confidence            5566  557899999999999999    99999 877554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.40  E-value=0.27  Score=33.47  Aligned_cols=35  Identities=9%  Similarity=-0.021  Sum_probs=25.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      .+|.|||.|.+|.-+|..|.+.|. ...+|+++ .|.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~-~~~~Vtli-~~~   55 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKP-KDGQVTLC-YRG   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEE-ESS
T ss_pred             CeEEEECCcHHHHHHHHHhhhccc-CCcEEEEE-ecc
Confidence            689999999999999976554432 22389988 654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.23  E-value=0.24  Score=38.44  Aligned_cols=41  Identities=12%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHh---CCCCCCCeEEEEeCCCHHHHHHHH
Q 023866           10 SFILGFIGA-GKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFE   55 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~~~~~~l~   55 (276)
                      |++|-|-|+ ..+|.++++.|++   .|+    +|++. .|++++++.++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~----~V~~~-~r~~~~~~~~~   46 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ----HLFTT-CRNREQAKELE   46 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS----EEEEE-ESCTTSCHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHH
Confidence            567877777 7899999999874   577    89999 99998876654

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.89  E-value=0.59  Score=35.06  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD   52 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~   52 (276)
                      +|-|||.|.-|..++..|.+.+. ..-+++.. |.+.+.++
T Consensus         3 ~IkViGvGGaG~n~v~~~~~~~~-~~v~~iai-nTD~~~L~   41 (198)
T d1ofua1           3 VIKVIGVGGGGGNAVNHMAKNNV-EGVEFICA-NTDAQALK   41 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESBTGGGS
T ss_pred             eEEEEEECchHHHHHHHHHHcCC-CCeEEEEE-eCcHHHHh
Confidence            68999999999999999999885 32345555 77766553

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=1.2  Score=32.10  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHH----HHcC--ceeccCchhhhcCCCEE
Q 023866            8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAF----ESIG--VKVLSDNNAVVEYSDVV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l----~~~g--~~~~~~~~~~~~~aDvI   75 (276)
                      .+..||+|+|-| ++..+++..+.+-|.    +++++ ...     ++-.+.+    .+.|  +..+.+..+++.++|+|
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~----~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGM----HLQAA-TPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCC----EEEEE-eccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhhe
Confidence            367899999986 344555555555677    88877 442     2222222    2234  45678889999999999


Q ss_pred             EEeeC
Q 023866           76 VFSVK   80 (276)
Q Consensus        76 ~lav~   80 (276)
                      ...+-
T Consensus        77 ~~~~~   81 (170)
T d1otha2          77 ITDTW   81 (170)
T ss_dssp             EECCS
T ss_pred             eeece
Confidence            98763

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=0.34  Score=39.67  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             eEE-EEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILG-FIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIg-iIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ||. |.| +|-+|+.++..|++.|+    +|++. +|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~----~V~~~-~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY----EVHGI-KRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence            555 556 79999999999999999    99999 8854

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.49  E-value=0.23  Score=38.21  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=29.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      .||-|.|+ |.||.++++.|.++|+    +|++. +|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~----~V~~~-~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY----TVLNI-DLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCch
Confidence            47877765 8999999999999999    99999 88764

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.27  Score=39.20  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      ++||.|.|+ |-+|+.+++.|++.|+    .+.+. ++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~----~vi~~-~~   34 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD----VELVL-RT   34 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT----EEEEC-CC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC----EEEEe-cC
Confidence            468999965 9999999999999998    77766 44

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.49  Score=35.60  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=29.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866            8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus         8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      ++.|||.|+|.+..+..+.+.|.++|+    +|..++.+
T Consensus         1 ~~~mKI~f~G~~~~~~~~L~~L~~~~~----~i~~Vit~   35 (206)
T d1fmta2           1 SESLRIIFAGTPDFAARHLDALLSSGH----NVVGVFTQ   35 (206)
T ss_dssp             CCCCEEEEEECSHHHHHHHHHHHHTTC----EEEEEECC
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCC----CEEEEEeC
Confidence            367999999999999999999999998    87643243

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=0.74  Score=31.46  Aligned_cols=65  Identities=15%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCC-EE
Q 023866            8 AESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSD-VV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G~-----------mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aD-vI   75 (276)
                      .+.+||-|||+|.           .+...++.|.+.|+    ++.+. |.||+..          .+|..    -|| +.
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~----~~Ili-N~NPeTV----------std~d----~aD~lY   62 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY----ETIMV-NCNPETV----------STDYD----TSDRLY   62 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC----EEEEE-CCCTTSS----------TTSTT----SSSEEE
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC----eEEEE-ecChhhh----------hcChh----hcCceE
Confidence            3568999999984           67788899999999    99998 9888753          23322    244 44


Q ss_pred             EEeeCcccHHHHHHHH
Q 023866           76 VFSVKPQVDKAAVITE   91 (276)
Q Consensus        76 ~lav~~~~~~~vl~~~   91 (276)
                      |-.+.+..+.++++.-
T Consensus        63 feplt~e~v~~Ii~~E   78 (121)
T d1a9xa4          63 FEPVTLEDVLEIVRIE   78 (121)
T ss_dssp             CCCCSHHHHHHHHHHH
T ss_pred             EccCCHHHHHHHHHHh
Confidence            5577888888887765

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.96  E-value=0.75  Score=33.50  Aligned_cols=41  Identities=12%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES   56 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~   56 (276)
                      ||||=|.|++|+.+.+.+++.+.    +|...+|.  +.+....|-+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~----~ivaINd~~~~~~~~~yLlk   44 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA----QVVAVNDPFIALEYMVYMFK   44 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC----CEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC----cEEEECCCCcCHHHHHHHHh
Confidence            89999999999999999998876    77766454  4566666655

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.83  E-value=0.4  Score=32.43  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=25.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHh---CCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAK---SGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~---~g~~~~~~V~v~~~r~   47 (276)
                      +++.|||.|..|.-+|..|.+   .|.    +|+++ .|+
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~----~Vtli-~~~   53 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGG----QVDLA-YRG   53 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTC----EEEEE-ESS
T ss_pred             CeEEEECCChHHHHHHHHhHhhccccc----cccee-ccc
Confidence            689999999999999876543   365    89988 664

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.82  E-value=0.36  Score=39.88  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVH   45 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~   45 (276)
                      |||.|.|+ |-+|+.++..|++.||    +|+++ |
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~----~V~~i-D   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY----EVCIV-D   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-E
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-e
Confidence            79999966 9999999999999999    99988 6

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.73  E-value=0.38  Score=36.98  Aligned_cols=36  Identities=8%  Similarity=0.077  Sum_probs=30.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK   49 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~   49 (276)
                      +.++|-|.|+ |.+|.++++.|.+.|+    +|.+. ++++.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~----~V~~~-~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW----WVASI-DVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCcc
Confidence            3467888877 8899999999999999    99888 77643

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.68  E-value=0.92  Score=33.80  Aligned_cols=31  Identities=13%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      +..||||||-. |+.- ++.+.|.+.|+    ++.++
T Consensus         4 ~~~mkIgii~~~Gn~~-s~~~al~~~G~----~~~~v   35 (202)
T d1q7ra_           4 QSNMKIGVLGLQGAVR-EHVRAIEACGA----EAVIV   35 (202)
T ss_dssp             CCCCEEEEESCGGGCH-HHHHHHHHTTC----EEEEE
T ss_pred             ccCCEEEEEECCCCHH-HHHHHHHHCCC----cEEEE
Confidence            46799999988 9984 46788999998    77766

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.63  Score=32.18  Aligned_cols=68  Identities=19%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             CCCCCCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCC
Q 023866            5 PIPAESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSD   73 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~-----------mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aD   73 (276)
                      |...+.+||-|||+|.           .+...++.|.+.|+    ++.+. |.||+..          .+|. +   -+|
T Consensus         2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~----~~ili-N~NP~TV----------std~-d---~aD   62 (127)
T d1a9xa3           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY----RVINV-NSNPATI----------MTDP-E---MAD   62 (127)
T ss_dssp             CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC----EEEEE-CSCTTCG----------GGCG-G---GSS
T ss_pred             CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC----eEEEe-cCchHhh----------hcCh-h---hcc
Confidence            4455779999999986           57778889999999    99988 8888753          2332 2   244


Q ss_pred             EEE-EeeCcccHHHHHHHH
Q 023866           74 VVV-FSVKPQVDKAAVITE   91 (276)
Q Consensus        74 vI~-lav~~~~~~~vl~~~   91 (276)
                      -++ -++..+.+.++++.-
T Consensus        63 ~lYfePlt~e~v~~Ii~~E   81 (127)
T d1a9xa3          63 ATYIEPIHWEVVRKIIEKE   81 (127)
T ss_dssp             EEECSCCCHHHHHHHHHHH
T ss_pred             eeeeecCCHHHHHHHHHHh
Confidence            444 477888888888765

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.30  E-value=0.067  Score=39.55  Aligned_cols=70  Identities=17%  Similarity=0.086  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-HHHH-----HcCce-e----ccCchhhhcCCCEE
Q 023866            8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFE-----SIGVK-V----LSDNNAVVEYSDVV   75 (276)
Q Consensus         8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~-----~~g~~-~----~~~~~~~~~~aDvI   75 (276)
                      .+.+++.|||-++ .|.+|+.-|.+.|.    .|+.+ +++.... ..-.     ..+.. .    .+...+....+|+|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga----TVt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCC----EEEEe-ccccccccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            4568999999875 59999999999887    88888 6542110 0000     00000 0    01133445679999


Q ss_pred             EEeeCcc
Q 023866           76 VFSVKPQ   82 (276)
Q Consensus        76 ~lav~~~   82 (276)
                      |.+++..
T Consensus       102 IsavG~p  108 (171)
T d1edza1         102 ITGVPSE  108 (171)
T ss_dssp             EECCCCT
T ss_pred             EEccCCC
Confidence            9998643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=85.08  E-value=0.36  Score=37.68  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF   54 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l   54 (276)
                      +.+.+-|-|+ +.+|.++|+.|.+.|.    +|++. .|+.++.+.+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~----~vii~-~r~~~~~~~~   45 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL----KNFVI-LDRVENPTAL   45 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC----SEEEE-EESSCCHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-ECCcccHHHH
Confidence            3445555555 6899999999999998    88877 5555544433

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=2.3  Score=28.71  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVDK   85 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~~   85 (276)
                      +..||-+-|. |.-|+..++.+++.|-    +|..-++....- +  .-.|+.++++..|+++  .+|.=++-|||....
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT----~vVaGVtPgkgG-~--~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~   77 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGVTPGKGG-T--THLGLPVFNTVREAVAATGATASVIYVPAPFCK   77 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTT-E--EETTEEEESSHHHHHHHHCCCEEEECCCGGGHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCC----ceEEEEccCCCC-c--ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHH
Confidence            4579999998 9999999999999997    766443433211 0  0157888998888765  689999999988655


Q ss_pred             -HHHHHHhhccccccCCcccCCCCcccHHHHHH
Q 023866           86 -AAVITEEAFGFCCCRSEIERPSGLQRWSRWVE  117 (276)
Q Consensus        86 -~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~  117 (276)
                       .+++.+. .|+   +.++--.-|+ +..++.+
T Consensus        78 dA~~EAi~-agI---~~iV~ITEgI-P~~D~~~  105 (119)
T d2nu7a1          78 DSILEAID-AGI---KLIITITEGI-PTLDMLT  105 (119)
T ss_dssp             HHHHHHHH-TTC---SEEEECCCCC-CHHHHHH
T ss_pred             HHHHHHHH-CCC---CEEEEecCCC-CHHHHHH
Confidence             4555442 232   2223333567 6654433

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=2.1  Score=34.19  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcc---cHHHHHHHHHHHhCC-CCCCCeEEEEeCC-----CHHHHHHHHHcC--ceeccCchhhhcCCCEEE
Q 023866            8 AESFILGFIGA---GKMAESIAKGVAKSG-VLPPDRICTAVHS-----NLKRRDAFESIG--VKVLSDNNAVVEYSDVVV   76 (276)
Q Consensus         8 ~~~~kIgiIG~---G~mG~~la~~l~~~g-~~~~~~V~v~~~r-----~~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~   76 (276)
                      .+..||+++|-   +++..+++..+.+-| .    +++++ .+     +++-.+.+.+.+  +....+..+++.++|+|.
T Consensus       152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~----~~~i~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy  226 (310)
T d1tuga1         152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGN----RFYFI-APDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILY  226 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSC----EEEEE-CCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEE
T ss_pred             cccceEEEEeccccCcchHHHHHHHHhccCc----eEEEe-CCcccccchhcccccccccceeeeeechhhhccCCceee
Confidence            35689999997   788899888877664 4    78877 43     333444555544  456688899999999887


Q ss_pred             Ee
Q 023866           77 FS   78 (276)
Q Consensus        77 la   78 (276)
                      ..
T Consensus       227 ~~  228 (310)
T d1tuga1         227 MT  228 (310)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.61  E-value=0.62  Score=34.17  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=51.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--C--chhhh-----cCCCEEEEee
Q 023866           10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--D--NNAVV-----EYSDVVVFSV   79 (276)
Q Consensus        10 ~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~--~~~~~-----~~aDvI~lav   79 (276)
                      ..+|-|-| .|.+|+...+-....|.    +|+.. .+++++.+.+++.|....-  +  ..+.+     +..|+||=++
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga----~Viat-~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGY----TVEAS-TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCC----ceEEe-cCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence            35689998 59999988887778888    89888 8889999988887764321  1  11111     2456666666


Q ss_pred             CcccHHHHHHHH
Q 023866           80 KPQVDKAAVITE   91 (276)
Q Consensus        80 ~~~~~~~vl~~~   91 (276)
                      -...+...+..+
T Consensus       107 gg~~~~~~l~~l  118 (176)
T d1xa0a2         107 GGRTLATVLSRM  118 (176)
T ss_dssp             TTTTHHHHHHTE
T ss_pred             CchhHHHHHHHh
Confidence            555555555444

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.60  E-value=0.52  Score=37.48  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      +||-|.|+ |-+|+.++..|++.||    +|++. +|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~----~V~~~-~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY----RVHGL-VARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence            47788865 9999999999999999    99988 7754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=0.42  Score=35.81  Aligned_cols=30  Identities=17%  Similarity=0.116  Sum_probs=27.9

Q ss_pred             EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      |.|||+|.-|...|..+.+.|.    +|.++ +++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~----kV~ii-E~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ----KCALI-EAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC----CEEEE-ESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC----EEEEE-ecc
Confidence            7899999999999999999998    99998 875

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=84.59  E-value=0.67  Score=33.63  Aligned_cols=76  Identities=12%  Similarity=0.083  Sum_probs=54.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchh----hh-----cCCCEEEEeeC
Q 023866           11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNA----VV-----EYSDVVVFSVK   80 (276)
Q Consensus        11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~----~~-----~~aDvI~lav~   80 (276)
                      ..|-|-| +|.+|....+-....|.    +|+.. .+++++.+.+++.|....-+..+    ..     +..|+||-++-
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga----~Viat-~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGY----DVVAS-TGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTC----CEEEE-ESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC----ceEEE-ecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            3588887 59999988887777888    89988 88899999999888653221111    11     24788888887


Q ss_pred             cccHHHHHHHH
Q 023866           81 PQVDKAAVITE   91 (276)
Q Consensus        81 ~~~~~~vl~~~   91 (276)
                      ...+.+.+..+
T Consensus       100 g~~~~~~~~~l  110 (167)
T d1tt7a2         100 GKQLASLLSKI  110 (167)
T ss_dssp             THHHHHHHTTE
T ss_pred             HHHHHHHHHHh
Confidence            66666665544

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.49  E-value=0.55  Score=37.60  Aligned_cols=32  Identities=13%  Similarity=0.080  Sum_probs=26.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      +++-|.|+ |-+|+.++..|++.||    +|+++ +|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~----~V~~~-~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY----EVHGL-IRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC----EEEEE-ECC
Confidence            44555555 9999999999999999    99998 774

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.36  E-value=0.5  Score=36.44  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=30.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR   51 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~   51 (276)
                      +.+++-|-|+ +.||.++++.|.+.|+    +|.+. +|+.+..
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~   44 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH----KVAVT-HRGSGAP   44 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCcchh
Confidence            4445555555 6899999999999999    99999 8886544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.30  E-value=0.48  Score=38.31  Aligned_cols=31  Identities=10%  Similarity=0.069  Sum_probs=27.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      +||.|.|+ |-+|+.|++.|++.|+    +|++. |+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~----~V~~l-d~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY----LPVVI-DN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC----CEEEE-EC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC----EEEEE-EC
Confidence            58988865 9999999999999999    99887 53

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=84.22  E-value=0.46  Score=34.85  Aligned_cols=45  Identities=9%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES   56 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~   56 (276)
                      |||||=|.|++|+.+.+.++.... +.-+|..+++.. .+....|-+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~ayLlk   46 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLK   46 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECTTCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEEcCCCCHHHHHHHHh
Confidence            699999999999999998876432 212555553543 333444444

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.00  E-value=0.87  Score=29.40  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      |||.+||.|.=-.+|+..|.++.+    +++++ .-|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~----~v~~~-pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGY----EVHFY-PGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTC----EEEEE-ECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCC----eEEEe-cCCc
Confidence            799999999999999999998776    88887 5554

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.40  E-value=2.9  Score=28.34  Aligned_cols=97  Identities=18%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccHH
Q 023866            9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVDK   85 (276)
Q Consensus         9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~~   85 (276)
                      +..||-+-|. |..|+.-++..++.|-    +|..-++....- +.  -.|+.++++..|+++  ++|.=++.|||....
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT----~iVaGVtPgkgG-~~--~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~   78 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGT----KIVAGVTPGKGG-ME--VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAA   78 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTT-CE--ETTEEEESSHHHHHHHSCCSEEEECCCHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCC----ceEeeeecCCCC-cE--EECCchHhhHHHHHHhcCCeEEEEeeCHHHHH
Confidence            4568999998 9999999999999986    766443433211 00  157888888888765  689999999988654


Q ss_pred             -HHHHHHhhccccccCCcccCCCCcccHHHHHH
Q 023866           86 -AAVITEEAFGFCCCRSEIERPSGLQRWSRWVE  117 (276)
Q Consensus        86 -~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~  117 (276)
                       .+++.+. .|.   +.++--.-|+ +..++.+
T Consensus        79 dAi~EAi~-agI---~liv~ITEgV-Pv~Dm~~  106 (121)
T d1oi7a1          79 DAALEAAH-AGI---PLIVLITEGI-PTLDMVR  106 (121)
T ss_dssp             HHHHHHHH-TTC---SEEEECCSCC-CHHHHHH
T ss_pred             HHHHHHHh-CCC---cEEEEecCCC-CHHHHHH
Confidence             5555552 232   2223333677 6655433

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.40  E-value=0.55  Score=34.61  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=29.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      ..+|.|||.|.-|..-|..+.+.|.    ++.++ ++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~----~v~vi-e~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL----KPLLF-EGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC----CCEEE-CCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC----cEEEE-Eee
Confidence            4689999999999998888999998    88888 754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.64  E-value=0.96  Score=33.21  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce
Q 023866            9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK   60 (276)
Q Consensus         9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~   60 (276)
                      +..+|-|.| +|.+|+..++-....|.   ..|+.+ .+++++...+.+ .|..
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga---~~vi~~-~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGC---SRVVGI-CGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTC---SEEEEE-ESSHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCC---cceecc-cchHHHHhhhhhcccce
Confidence            335788888 59999988886666775   145555 667777666654 5654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=82.56  E-value=0.56  Score=38.36  Aligned_cols=32  Identities=9%  Similarity=0.249  Sum_probs=25.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS   46 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r   46 (276)
                      |||-|.|+ |-+|+.++..|++.|+    ++++.+|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~----~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ----DTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS----CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC----CEEEEEeC
Confidence            79999965 9999999999999998    65443254

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=82.40  E-value=0.35  Score=37.84  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCC
Q 023866           11 FILGFIGA-GKMAESIAKGVAKSGV   34 (276)
Q Consensus        11 ~kIgiIG~-G~mG~~la~~l~~~g~   34 (276)
                      |||.|.|+ |-+|+.+++.|.+.|+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~   25 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN   25 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC
Confidence            79999986 9999999999998885

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.34  E-value=0.81  Score=36.58  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=27.0

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           11 FILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        11 ~kIgiI-G-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      -|+.+| | .+.||.+++..|.+.|.    +|.+. +|+.
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga----~Vvi~-d~~~   41 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA----LVVVN-DLGG   41 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CCCB
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCc
Confidence            356666 4 48899999999999999    99998 7653

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.26  E-value=0.79  Score=37.03  Aligned_cols=36  Identities=28%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             CeEEEE-ccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH
Q 023866           11 FILGFI-GAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRR   51 (276)
Q Consensus        11 ~kIgiI-G~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~   51 (276)
                      .||++| |+|   .+|.++|+.|.+.|.    +|.+. +++....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA----~V~i~-~~~~~~~   41 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV----KIIFG-IWPPVYN   41 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-ECGGGHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC----EEEEE-eCchhhh
Confidence            478888 866   699999999999998    99988 7765543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.25  E-value=0.23  Score=36.37  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhCCC
Q 023866           11 FILGFIGAGKMAESIAKGVAKSGV   34 (276)
Q Consensus        11 ~kIgiIG~G~mG~~la~~l~~~g~   34 (276)
                      .+|.|||.|..|.-+|..|.+.|.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~   27 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGY   27 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCC
Confidence            469999999999999999999886

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=0.67  Score=33.93  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=29.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ..+|.|||.|+-|..-|..+.+.|.    +++++ ++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~----~v~ii-e~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANL----QPVLI-TGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC----CCEEE-CCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC----ceEEE-Eeec
Confidence            3579999999999998888999998    89998 7653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=0.8  Score=31.85  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHH----hCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVA----KSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~----~~g~~~~~~V~v~~~r~   47 (276)
                      .++|.|||.|..|.-+|..|.    +.|.    +|+++ .++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~----~Vt~i-~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT----EVIQL-FPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC----EEEEE-CSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC----EEEEe-ccc
Confidence            368999999999988888874    3576    88887 553

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.62  E-value=0.42  Score=37.16  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             EEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866           15 FIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES   56 (276)
Q Consensus        15 iIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~   56 (276)
                      |-|+ +.+|.++|..|.+.|+    +|.+. +|+.++.+++++
T Consensus         5 VTGas~GiG~aiA~~la~~Ga----~V~i~-~r~~~~~~~~~~   42 (252)
T d1zmta1           5 VTNVKHFGGMGSALRLSEAGH----TVACH-DESFKQKDELEA   42 (252)
T ss_dssp             ESSTTSTTHHHHHHHHHHTTC----EEEEC-CGGGGSHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHh
Confidence            3354 6699999999999999    99999 999888877765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.99  E-value=0.61  Score=34.80  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=29.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866           10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN   47 (276)
Q Consensus        10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~   47 (276)
                      .-=+.|||.|.-|...|..+.+.|.    +|.++ +++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~----kV~vi-e~~   35 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGF----KTTCI-EKR   35 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTC----CEEEE-ECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC----cEEEE-Eec
Confidence            3458899999999999999999998    99998 765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.90  E-value=0.81  Score=32.40  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=27.1

Q ss_pred             eEEEE--cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiI--G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      ++-|+  |.|.+|..+|..|.+.|.    +|++. .+.+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~----~Vtlv-~~~~   74 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGH----EVTIV-SGVH   74 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTC----EEEEE-ESSC
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCC----eEEEE-ecCC
Confidence            44454  999999999999999999    99998 7654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=80.60  E-value=0.64  Score=36.39  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.3

Q ss_pred             eEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~   48 (276)
                      -|.|||+|.-|.+.|..|.+ .|+    +|.++ ++++
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~----~V~vl-E~~~   67 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV----QVAII-EQSV   67 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS----CEEEE-ESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC----eEEEE-ecCC
Confidence            38999999999999999876 599    99999 8765

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.51  E-value=3.3  Score=28.35  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccH
Q 023866            8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVD   84 (276)
Q Consensus         8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~   84 (276)
                      .+..||-+-|. |.-|+.-++.+++.|-    +|..-+.....-.   .-.|+.++++..|+++  ++|.=++-|||...
T Consensus        13 ~k~TrVivQGiTG~~G~~ht~~m~~YGT----~iVaGVtPgKgG~---~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a   85 (130)
T d1euca1          13 DKNTKVICQGFTGKQGTFHSQQALEYGT----NLVGGTTPGKGGK---THLGLPVFNTVKEAKEQTGATASVIYVPPPFA   85 (130)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCCHHHH
T ss_pred             cCCCeEEEEcCCCcHHHHHHHHHHHhcC----CeEEeeccCCCCc---cccCccchhhHHHHHHhcCCcEEEEecCHHHH
Confidence            35679999998 9999999999999997    7764434432110   0157888999888876  69999999998865


Q ss_pred             H-HHHHHHhhccccccCCcccCCCCcccHHHH
Q 023866           85 K-AAVITEEAFGFCCCRSEIERPSGLQRWSRW  115 (276)
Q Consensus        85 ~-~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l  115 (276)
                      . .+++.+. .|+   +.++--.-|+ +..++
T Consensus        86 ~dAi~EAi~-agI---~liV~ITEgI-Pv~Dm  112 (130)
T d1euca1          86 AAAINEAID-AEV---PLVVCITEGI-PQQDM  112 (130)
T ss_dssp             HHHHHHHHH-TTC---SEEEECCCCC-CHHHH
T ss_pred             HHHHHHHHh-CCC---CEEEEecCCC-CHHHH
Confidence            4 5555552 232   2223333677 66544

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.51  E-value=1.7  Score=30.88  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866            5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA   43 (276)
Q Consensus         5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~   43 (276)
                      |.|.-..||.|||.|+.|.=.|..+.+.|.   ..|+++
T Consensus        40 ~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA---~~V~vi   75 (153)
T d1gtea3          40 PLPSIRGAVIVLGAGDTAFDCATSALRCGA---RRVFLV   75 (153)
T ss_dssp             CCCCCCSEEEEECSSHHHHHHHHHHHHTTC---SEEEEE
T ss_pred             ccccCCCEEEEECCChhHHHHHHHHHHcCC---cceeEE
Confidence            334445689999999999999998888875   257776

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.30  E-value=0.7  Score=34.68  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866           12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL   48 (276)
Q Consensus        12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~   48 (276)
                      -|.|||+|.-|..-|..+.+.|+    +|.++ ++++
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~----kV~li-e~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF----NTACV-EKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC----cEEEE-EecC
Confidence            48999999999999999999999    99999 7653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.21  E-value=2  Score=32.57  Aligned_cols=76  Identities=9%  Similarity=-0.024  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC--cee-ccCchhh--hcCCCEEEEee
Q 023866            9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKV-LSDNNAV--VEYSDVVVFSV   79 (276)
Q Consensus         9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~-~~~~~~~--~~~aDvI~lav   79 (276)
                      +..+|.=||||. |. ++..|.+.|.    +|+.+ |.+++-++.+++    .+  +.. ..+..++  -+..|+|++.-
T Consensus        41 ~~~~iLDiGcGt-G~-~~~~l~~~~~----~v~gv-D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~  113 (251)
T d1wzna1          41 EVRRVLDLACGT-GI-PTLELAERGY----EVVGL-DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF  113 (251)
T ss_dssp             CCCEEEEETCTT-CH-HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred             CCCEEEEeCCCC-Cc-cchhhcccce----EEEEE-eeccccccccccccccccccchheehhhhhcccccccchHhhhh
Confidence            346899999997 54 4556888888    99999 999987766554    23  332 2232221  23568888752


Q ss_pred             ------CcccHHHHHHHH
Q 023866           80 ------KPQVDKAAVITE   91 (276)
Q Consensus        80 ------~~~~~~~vl~~~   91 (276)
                            .+.+...++.++
T Consensus       114 ~~~~~~~~~~~~~~L~~~  131 (251)
T d1wzna1         114 STIMYFDEEDLRKLFSKV  131 (251)
T ss_dssp             SGGGGSCHHHHHHHHHHH
T ss_pred             hhhhcCChHHHHHHHHHH
Confidence                  223455666666

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=1.7  Score=31.66  Aligned_cols=75  Identities=9%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             eEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCch-----hhh--cCCCEEEEeeCccc
Q 023866           12 ILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN-----AVV--EYSDVVVFSVKPQV   83 (276)
Q Consensus        12 kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~-----~~~--~~aDvI~lav~~~~   83 (276)
                      +|-|. |+|.+|..-.+-....|.    +|+.. .+++++.+.+++.|....-+..     +.+  ...|.+|=+|-...
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga----~Via~-~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~  108 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGY----QVVAV-SGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKV  108 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHHH
T ss_pred             cEEEEEccccchHHHHHHHHHcCC----CeEEE-ecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchHH
Confidence            56666 459999988887788898    89988 8999999988888875322111     111  12467766665444


Q ss_pred             HHHHHHHH
Q 023866           84 DKAAVITE   91 (276)
Q Consensus        84 ~~~vl~~~   91 (276)
                      +...+..+
T Consensus       109 ~~~~l~~l  116 (177)
T d1o89a2         109 LAKVLAQM  116 (177)
T ss_dssp             HHHHHHTE
T ss_pred             HHHHHHHh
Confidence            44444433