Citrus Sinensis ID: 023870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEEEcccccccccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHcccEEcHHccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccccHcccccccccccccHHHHccHHHcccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHccccccccccccccccEEccccccccccccccccEEEEcccccHccc
Coil and Loop (DISEMBL)
MDTGKMQSAVLAlsedkilpVSAVLNAIRDLGdeaveqcdpQIITQasslsqlpvesfsIDTVLsissshelpgdqLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIqlksvvpaevvsfgvkgkkptwkigssfaikKAPKSLAklqvdddsdlidedtllteedlkkpqlpsvgdcevgstrkackNCICGRAEAEEKVEKLGLTMDqlknpqsacgscglgdafrcgtcpykglppfklgekvslssnflvadi
Flexible Loop (DISEMBL)
MDTGKMQSAVLalsedkilpVSAVLNAIRDLGDEAVEQCDPQIITQasslsqlpVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYkkltsdkgdVDKAISALEGKLLLAGFLDAQRIQLKSVVPaevvsfgvkgkkptwkigssfaikkapkslaklqvdddsDLIDEDTLlteedlkkpqlpsvgdcevgstrKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGlppfklgekvslssnflvadi
Low Complexity Region (SEG)
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVdddsdlidedtllteedlKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Disordered region (IsUnstruct)
**********LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI********DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIK**************************************DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL*********
Disordered Region (DISOPRED)
*******SAVLALSEDKILPVSAVLNAI*DLGDE*VEQCDPQ**************SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ********VVSFGVKGKKPT*************KSLAKLQVDDDSDLIDEDTLLTEEDL****************************************************SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA**
Disordered Region (DISEMBL)
*********VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Disordered Region (DISPRO)
******QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK*KK**************************SDLIDEDTLLTEEDLKKPQ**SVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
D1I234	272	Anamorsin homolog OS=Viti	yes	no	0.978	0.992	0.735	1e-107
A9PBH9	277	Anamorsin homolog OS=Popu	yes	no	0.996	0.992	0.705	1e-104
B9RBT0	274	Anamorsin homolog OS=Rici	N/A	no	0.989	0.996	0.678	1e-101
B7FNA9	265	Anamorsin homolog OS=Medi	N/A	no	0.960	1.0	0.637	1e-91
C6TKZ5	260	Anamorsin homolog OS=Glyc	no	no	0.942	1.0	0.642	6e-90
Q8L7Z3	272	Anamorsin homolog OS=Arab	yes	no	0.981	0.996	0.581	2e-81
Q7XQ97	265	Anamorsin homolog 1 OS=Or	yes	no	0.923	0.962	0.552	3e-71
A2XYW4	265	Anamorsin homolog 1 OS=Or	N/A	no	0.887	0.924	0.566	3e-71
B8ARI7	264	Anamorsin homolog 2 OS=Or	N/A	no	0.887	0.928	0.566	2e-70
Q7XPW7	264	Anamorsin homolog 2 OS=Or	yes	no	0.822	0.859	0.587	7e-70

>sp|D1I234|DRE2_VITVI Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 226/272 (83%), Gaps = 2/272 (0%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 126 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 244
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 245 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 241 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 272

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.
Vitis vinifera (taxid: 29760)

>sp|A9PBH9|DRE2_POPTR Anamorsin homolog OS=Populus trichocarpa GN=POPTRDRAFT_761104 PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/278 (70%), Positives = 227/278 (81%), Gaps = 3/278 (1%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           SCGLGDAFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 240 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Populus trichocarpa (taxid: 3694)

>sp|B9RBT0|DRE2_RICCO Anamorsin homolog OS=Ricinus communis GN=RCOM_1680640 PE=3 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 223/277 (80%), Gaps = 4/277 (1%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  + Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+
Sbjct: 1   MDRTRKQCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSM 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGF
Sbjct: 61  DIVISICRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ +QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+
Sbjct: 121 LEAQGLQLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LLTEED+KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACGS
Sbjct: 179 LLTEEDMKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGS 237

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRC TCPYKGLPPFKLGEKVSLS NFL ADI
Sbjct: 238 CGLGDAFRCSTCPYKGLPPFKLGEKVSLSGNFLAADI 274

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Ricinus communis (taxid: 3988)

>sp|B7FNA9|DRE2_MEDTR Anamorsin homolog OS=Medicago truncatula PE=2 SV=1

 Score =  336 bits (861), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/276 (63%), Positives = 207/276 (75%), Gaps = 11/276 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  KM  AVLA +++ +LPVS V +AIR+LG+E VE+ DP +IT ASSLS+ PVES S+
Sbjct: 1   MDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+ I  S + P DQL +E+ RVLK GGT LI K   S  G  DK I  LE KLLLAGF
Sbjct: 61  DLVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIRKSSQSAVGSGDKMIPDLENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +Q          S  +K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDE++L
Sbjct: 121 SEIQALQ----------SSVIKAKKPSWKIGSSFALKKVVKSSPKVQIDFDSDLIDENSL 170

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSC 240
           L+EEDLKKP+LPS GDCE+G TRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACGSC
Sbjct: 171 LSEEDLKKPELPS-GDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSC 229

Query: 241 GLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           GLGDAFRC TCPYKGLP FK+GEKV+LS NFL ADI
Sbjct: 230 GLGDAFRCSTCPYKGLPAFKMGEKVALSGNFLAADI 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Medicago truncatula (taxid: 3880)

>sp|C6TKZ5|DRE2_SOYBN Anamorsin homolog OS=Glycine max PE=2 SV=1

 Score =  330 bits (846), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 174/271 (64%), Positives = 205/271 (75%), Gaps = 11/271 (4%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           M  AVLA ++  +LPVS V +AIR+LG+  +EQ DP ++T AS LS+LPV+S S+D V+ 
Sbjct: 1   MDGAVLACTDGAVLPVSQVFDAIRELGNGGLEQWDPLVLTSASLLSKLPVDSSSVDFVIL 60

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S + P DQL++EI RVLK  GTILI K   S  G  DK IS+LE KLLLAGF + Q 
Sbjct: 61  IWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISSLENKLLLAGFTEPQV 120

Query: 126 IQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 185
           +Q          S G+K KKP+WKIGSSFA+KK  +S  K+Q+D DSDLIDED+ LTEED
Sbjct: 121 LQ----------SAGIKAKKPSWKIGSSFALKKVIRSSPKMQIDFDSDLIDEDSFLTEED 170

Query: 186 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDA 245
           LKKPQLP  GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG+CGLGDA
Sbjct: 171 LKKPQLPP-GDCEIGSTRKACKNCTCGRAEEEEKVLKLGLTTEQIDNPQSACGNCGLGDA 229

Query: 246 FRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           FRC TCPYKGLP FKLGEKV+LS NFL ADI
Sbjct: 230 FRCSTCPYKGLPAFKLGEKVALSGNFLAADI 260

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Glycine max (taxid: 3847)

>sp|Q8L7Z3|DRE2_ARATH Anamorsin homolog OS=Arabidopsis thaliana GN=At5g18400 PE=1 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/277 (58%), Positives = 213/277 (76%), Gaps = 6/277 (2%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD+   Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S+
Sbjct: 1   MDSMMNQKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           + VL+IS + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGF
Sbjct: 61  EAVLAISKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGF 117

Query: 121 LDAQRIQLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+ Q + LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +DDD DLIDED+
Sbjct: 118 LEPQCLDLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDS 177

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LLTEEDL KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CGS
Sbjct: 178 LLTEEDLMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGS 235

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRCGTCPYKGLPPFKLGEKV+LS NFL ADI
Sbjct: 236 CGLGDAFRCGTCPYKGLPPFKLGEKVTLSQNFLEADI 272

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XQ97|DRE21_ORYSJ Anamorsin homolog 1 OS=Oryza sativa subsp. japonica GN=Os04g0674400 PE=2 SV=2

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 189/268 (70%), Gaps = 13/268 (4%)

Query: 11  LALSEDKILPVSAVLNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISS 68
           LA++++  LP    L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++  
Sbjct: 9   LAVTDELALP----LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIK 64

Query: 69  SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL 128
             E  GD  + EISRVLK GG +LI     S   D D   ++++ KLLL GF+D Q    
Sbjct: 65  KVENLGDLFITEISRVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAA 119

Query: 129 KSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKK 188
            S      V+  +K KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKK
Sbjct: 120 SSQDSEHSVT--IKAKKVSWSLGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKK 177

Query: 189 PQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRC 248
           P+LP VGDCEVG+TRKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRC
Sbjct: 178 PELPVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRC 237

Query: 249 GTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           GTCPY+GLP FK GEK++L  NFL AD+
Sbjct: 238 GTCPYRGLPAFKPGEKIALPGNFLAADM 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XYW4|DRE21_ORYSI Anamorsin homolog 1 OS=Oryza sativa subsp. indica GN=H0403D02.15 PE=2 SV=1

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/254 (56%), Positives = 181/254 (71%), Gaps = 9/254 (3%)

Query: 25  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 82
           L A+ DL   A V + +  +ITQ +SL  +LP    S+ +VL++    E  G+Q + EIS
Sbjct: 19  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFADASVGSVLAVIKKVENLGNQFITEIS 78

Query: 83  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 142
           RVLK GG +L+     S   D D   +++E KLLL GF+D Q     S      V+  +K
Sbjct: 79  RVLKAGGMVLVQ----SSPSDQDPN-NSIERKLLLGGFVDVQASAASSQDNEHSVN--IK 131

Query: 143 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 132 AKKASWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 191

Query: 203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLG 262
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK G
Sbjct: 192 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPG 251

Query: 263 EKVSLSSNFLVADI 276
           EK++L  NFL AD+
Sbjct: 252 EKIALPGNFLAADM 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|B8ARI7|DRE22_ORYSI Anamorsin homolog 2 OS=Oryza sativa subsp. indica GN=OsI_17963 PE=2 SV=1

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/254 (56%), Positives = 181/254 (71%), Gaps = 9/254 (3%)

Query: 25  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 82
           L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++    E  GD  + EIS
Sbjct: 18  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEIS 77

Query: 83  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 142
           RVLK GG +LI     S   D D   ++++ KLLL GF+D Q     S      V+  +K
Sbjct: 78  RVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IK 130

Query: 143 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 131 AKKVSWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 190

Query: 203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLG 262
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK G
Sbjct: 191 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPG 250

Query: 263 EKVSLSSNFLVADI 276
           EK++L  NFL AD+
Sbjct: 251 EKIALPGNFLAADL 264

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XPW7|DRE22_ORYSJ Anamorsin homolog 2 OS=Oryza sativa subsp. japonica GN=Os04g0682050 PE=2 SV=1

 Score =  264 bits (674), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 172/235 (73%), Gaps = 8/235 (3%)

Query: 43  IITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDK 101
           +ITQ +SL  +LP +  S+ +VL++    E  GD  + EISRVLK GG +LI     S  
Sbjct: 37  VITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEISRVLKAGGMVLIQ----SSP 92

Query: 102 GDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPK 161
            D D   ++++ KLLL GF+D Q     S      V+  +K KK +W +GSSF +KKA K
Sbjct: 93  SDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IKAKKVSWSMGSSFPLKKATK 149

Query: 162 SLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVE 221
            L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+TRKACKNC CGRAEAEEKVE
Sbjct: 150 GLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGATRKACKNCTCGRAEAEEKVE 209

Query: 222 KLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           KL LT +Q+ NPQSACG+CGLGDAFRCGTCPY+GLP FK GEK++L  NFL AD+
Sbjct: 210 KLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPGEKIALPGNFLAADL 264

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
225425061	276	PREDICTED: anamorsin homolog [Vitis vini	0.996	0.996	0.732	1e-107
292630750	272	RecName: Full=Anamorsin homolog; AltName	0.978	0.992	0.735	1e-106
292630769	277	RecName: Full=Anamorsin homolog; AltName	0.996	0.992	0.705	1e-102
118483629	277	unknown [Populus trichocarpa]	0.996	0.992	0.705	1e-102
255537095	274	Anamorsin, putative [Ricinus communis] g	0.989	0.996	0.678	1e-100
224082520	266	predicted protein [Populus trichocarpa]	0.956	0.992	0.691	2e-97
147771846	279	hypothetical protein VITISV_035762 [Viti	0.931	0.921	0.670	1e-93
356543201	267	PREDICTED: anamorsin homolog [Glycine ma	0.963	0.996	0.642	7e-92
388497454	274	unknown [Lotus japonicus]	0.989	0.996	0.646	1e-91
357473847	265	Anamorsin-like protein [Medicago truncat	0.960	1.0	0.637	7e-90

>gi|225425061|ref|XP_002271546.1| PREDICTED: anamorsin homolog [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/277 (73%), Positives = 229/277 (82%), Gaps = 2/277 (0%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MDT  +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+
Sbjct: 1   MDTKMLQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSL 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGF
Sbjct: 61  DIVISICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGF 119

Query: 121 LDAQRIQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+
Sbjct: 120 LEAQAIQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDS 179

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LLTEEDLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGS
Sbjct: 180 LLTEEDLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGS 239

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 240 CGLGDAFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630750|sp|D1I234.1|DRE2_VITVI RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|297738244|emb|CBI27445.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/272 (73%), Positives = 226/272 (83%), Gaps = 2/272 (0%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 126 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 244
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSCGLGD
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 245 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           AFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 241 AFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630769|sp|A9PBH9.1|DRE2_POPTR RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|118483677|gb|ABK93732.1| unknown [Populus trichocarpa]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/278 (70%), Positives = 227/278 (81%), Gaps = 3/278 (1%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           SCGLGDAFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 240 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483629|gb|ABK93709.1| unknown [Populus trichocarpa]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/278 (70%), Positives = 227/278 (81%), Gaps = 3/278 (1%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALADDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           SCGLGDAFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 240 SCGLGDAFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537095|ref|XP_002509614.1| Anamorsin, putative [Ricinus communis] gi|292630771|sp|B9RBT0.1|DRE2_RICCO RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|223549513|gb|EEF51001.1| Anamorsin, putative [Ricinus communis]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 223/277 (80%), Gaps = 4/277 (1%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  + Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+
Sbjct: 1   MDRTRKQCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSM 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGF
Sbjct: 61  DIVISICRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ +QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+
Sbjct: 121 LEAQGLQLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LLTEED+KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACGS
Sbjct: 179 LLTEEDMKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGS 237

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRC TCPYKGLPPFKLGEKVSLS NFL ADI
Sbjct: 238 CGLGDAFRCSTCPYKGLPPFKLGEKVSLSGNFLAADI 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082520|ref|XP_002306726.1| predicted protein [Populus trichocarpa] gi|222856175|gb|EEE93722.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/272 (69%), Positives = 218/272 (80%), Gaps = 8/272 (2%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 2   LQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DK       KLLL GFL+A+ 
Sbjct: 62  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKR------KLLLGGFLEAEA 115

Query: 126 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 116 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 175

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 244
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACGSCGLGD
Sbjct: 176 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 234

Query: 245 AFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           AFRCGTCPYKGLPPFKLGEKVSLS NFLVADI
Sbjct: 235 AFRCGTCPYKGLPPFKLGEKVSLSENFLVADI 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771846|emb|CAN71337.1| hypothetical protein VITISV_035762 [Vitis vinifera]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/276 (67%), Positives = 212/276 (76%), Gaps = 19/276 (6%)

Query: 2   DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID 61
           DT  +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSL+ L        
Sbjct: 22  DTKMLQNSTLALTDHEVLXISTVLDAVRKLDNAGVDQCDPLIITQASSLNHL-------- 73

Query: 62  TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121
             L IS           ++ SRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL
Sbjct: 74  NFLVISC---------WQKSSRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFL 123

Query: 122 DAQRIQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
           +AQ JQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+L
Sbjct: 124 EAQAJQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSL 183

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSC 240
           LTEEDLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACGSC
Sbjct: 184 LTEEDLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSC 243

Query: 241 GLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           GLGDAFRCGTCPYKGLPPFKLG+KVSLS NFLVADI
Sbjct: 244 GLGDAFRCGTCPYKGLPPFKLGDKVSLSGNFLVADI 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543201|ref|XP_003540051.1| PREDICTED: anamorsin homolog [Glycine max]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 178/277 (64%), Positives = 211/277 (76%), Gaps = 11/277 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  K   AVLA ++  +LPVS V +AIR+LG+E VEQ DP ++T AS LS+LPV+S S+
Sbjct: 1   MDGAKTHGAVLACTDGAVLPVSQVFDAIRELGNEGVEQWDPLVLTSASLLSKLPVDSSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D ++ I  S + P DQL++EI RVLK  GTILI K   S  G  DK ISALE KLLLAGF
Sbjct: 61  DFLILIWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISALENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +QL           G+K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDED+L
Sbjct: 121 TETQVLQLT----------GIKAKKPSWKIGSSFALKKVIKSSPKMQIDFDSDLIDEDSL 170

Query: 181 LTEEDLKKPQLP-SVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LTEEDLKKPQLP ++GDCE+GSTRKACKNC CGRAE +EK+ KLGLT +Q+ NPQSACG+
Sbjct: 171 LTEEDLKKPQLPPAIGDCEIGSTRKACKNCTCGRAEEDEKILKLGLTTEQINNPQSACGN 230

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRC TCPYKGLP FKLGEKV+LS NFL ADI
Sbjct: 231 CGLGDAFRCSTCPYKGLPAFKLGEKVALSGNFLAADI 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497454|gb|AFK36793.1| unknown [Lotus japonicus]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/277 (64%), Positives = 216/277 (77%), Gaps = 4/277 (1%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPVESFS 59
           MD  K+  ++LA +++ +LPVS V +AI++LG++ V EQ +P +IT ASSLS+LPVES S
Sbjct: 1   MDAAKIGGSLLACTDEAVLPVSQVFDAIKELGNQGVDEQWNPLVITSASSLSKLPVESSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D  + I  S + P DQL++EI RVLK GGT LI K   S  G VDKAIS LE KLLL G
Sbjct: 61  VDVAILIWQSLDSPVDQLVQEILRVLKAGGTTLIRKSSQSGVGSVDKAISDLESKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           F + Q +Q  S VP+   S  VK KKP+WKIGSSFA+KKA KS  K+Q+D DSDLIDED+
Sbjct: 121 FTETQVLQ--STVPSGSKSSWVKAKKPSWKIGSSFALKKAVKSSPKVQIDFDSDLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
           LLTE+DLKKPQLP +GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQS+CGS
Sbjct: 179 LLTEDDLKKPQLP-LGDCEIGSTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSSCGS 237

Query: 240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           CGLGDAFRC TCPYKGLP FKLGEKV++S NFL AD+
Sbjct: 238 CGLGDAFRCSTCPYKGLPAFKLGEKVAISGNFLAADL 274

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473847|ref|XP_003607208.1| Anamorsin-like protein [Medicago truncatula] gi|292630728|sp|B7FNA9.1|DRE2_MEDTR RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|217075765|gb|ACJ86242.1| unknown [Medicago truncatula] gi|355508263|gb|AES89405.1| Anamorsin-like protein [Medicago truncatula] gi|388492662|gb|AFK34397.1| unknown [Medicago truncatula]

 Score =  336 bits (861), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 176/276 (63%), Positives = 207/276 (75%), Gaps = 11/276 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  KM  AVLA +++ +LPVS V +AIR+LG+E VE+ DP +IT ASSLS+ PVES S+
Sbjct: 1   MDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+ I  S + P DQL +E+ RVLK GGT LI K   S  G  DK I  LE KLLLAGF
Sbjct: 61  DLVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIRKSSQSAVGSGDKMIPDLENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +Q          S  +K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDE++L
Sbjct: 121 SEIQALQ----------SSVIKAKKPSWKIGSSFALKKVVKSSPKVQIDFDSDLIDENSL 170

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSC 240
           L+EEDLKKP+LPS GDCE+G TRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACGSC
Sbjct: 171 LSEEDLKKPELPS-GDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSC 229

Query: 241 GLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
           GLGDAFRC TCPYKGLP FK+GEKV+LS NFL ADI
Sbjct: 230 GLGDAFRCSTCPYKGLPAFKMGEKVALSGNFLAADI 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2146178	272	AT5G18400 [Arabidopsis thalian	0.981	0.996	0.523	2.5e-74
UNIPROTKB|Q6FI81	312	CIAPIN1 "Anamorsin" [Homo sapi	0.297	0.262	0.550	1.6e-30
UNIPROTKB|Q5EAC7	310	CIAPIN1 "Anamorsin" [Bos tauru	0.297	0.264	0.561	2.6e-30
UNIPROTKB|E2RTJ0	315	CIAPIN1 "Uncharacterized prote	0.297	0.260	0.550	1.8e-29
DICTYBASE|DDB_G0285251	256	rsc43 "Protein DRE2" [Dictyost	0.905	0.976	0.350	2.1e-29
UNIPROTKB|I3L704	313	CIAPIN1 "Uncharacterized prote	0.297	0.261	0.561	5.9e-29
MGI|MGI:1922083	309	Ciapin1 "cytokine induced apop	0.297	0.265	0.5	2e-28
RGD|1549737	309	Ciapin1 "cytokine induced apop	0.297	0.265	0.534	4.5e-27
ZFIN|ZDB-GENE-040808-57	349	ciapin1 "cytokine induced apop	0.307	0.243	0.521	4.4e-25
TAIR|locus:4515103586	182	AT5G18362 "AT5G18362" [Arabido	0.347	0.527	0.5	6.3e-21

TAIR|locus:2146178 AT5G18400 [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 145/277 (52%), Positives = 196/277 (70%)

Query:     1 MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
             MD+   Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S+
Sbjct:     1 MDSMMNQKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSV 60

Query:    61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
             + VL+IS + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGF
Sbjct:    61 EAVLAISKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGF 117

Query:   121 LDAQRIQLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXX 179
             L+ Q + LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +           
Sbjct:   118 LEPQCLDLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDS 177

Query:   180 XXXXXXXKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
                     KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CGS
Sbjct:   178 LLTEEDLMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGS 235

Query:   240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
             CGLGDAFRCGTCPYKGLPPFKLGEKV+LS NFL ADI
Sbjct:   236 CGLGDAFRCGTCPYKGLPPFKLGEKVTLSQNFLEADI 272

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6FI81 CIAPIN1 "Anamorsin" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 49/89 (55%), Positives = 59/89 (66%)

Query:   187 KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 243
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + +Q+ + P+SACG+C LG
Sbjct:   225 KKPDPASLRAASCGEGKKRKACKNCTCGLAEELEK-EK---SREQMSSQPKSACGNCYLG 280

Query:   244 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             DAFRC +CPY G+P FK GEKV LS + L
Sbjct:   281 DAFRCASCPYLGMPAFKPGEKVLLSDSNL 309

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q5EAC7 CIAPIN1 "Anamorsin" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 50/89 (56%), Positives = 59/89 (66%)

Query:   187 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 243
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + DQ+ + P+SACG+C LG
Sbjct:   223 KKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEK-EK---SRDQISSQPKSACGNCYLG 278

Query:   244 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             DAFRC +CPY G+P FK GEKV LS + L
Sbjct:   279 DAFRCASCPYLGMPAFKPGEKVLLSDSNL 307

GO:0005737 "cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|E2RTJ0 CIAPIN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 49/89 (55%), Positives = 59/89 (66%)

Query:   187 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 243
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + +Q  + P+SACG+C LG
Sbjct:   228 KKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEK-EK---SREQASSQPKSACGNCYLG 283

Query:   244 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             DAFRC +CPY G+P FK GE+V LS+N L
Sbjct:   284 DAFRCASCPYLGMPAFKPGEQVLLSNNNL 312

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

DICTYBASE|DDB_G0285251 rsc43 "Protein DRE2" [Dictyostelium discoideum (taxid:44689)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 97/277 (35%), Positives = 135/277 (48%)

Query:     6 MQSAVLALS-EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVL 64
             M S  L L+ E ++L +S V N+   +    V++    + T  S   Q    +F  D V+
Sbjct:     1 MNSLSLELNKEQEVLIISDVENSESIINQ--VKELSKTVTTSLSKEQQQIQNNF--DHVI 56

Query:    65 SISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123
              ISS    P    L+   S +LK GG + IY+    ++  V+  +  L G L+   F   
Sbjct:    57 IISSK---PFNSALISMYSNLLKKGGKLSIYQT-NENETLVNSGMDFLIGGLV--DFKAT 110

Query:   124 QRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXX 183
                  K++V A+         KP+W    S  I   P + +                   
Sbjct:   111 SNSTYKTIVHAD---------KPSWDTNESSTIN-IPSTSSNNPWASIEGGDRINENDLV 160

Query:   184 XXXKKPQLPS--VGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQ--SACGS 239
                 K   P+  + DCEVG T+KACKNC CGRAE EE   K  LT + ++NP   S+CG+
Sbjct:   161 SENDKTSKPATTLDDCEVGKTKKACKNCTCGRAE-EENQSKPKLTKEMIENPGVGSSCGN 219

Query:   240 CGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVADI 276
             C LGDAFRCG CPY+GLP FK+GEK+ L  +FLV DI
Sbjct:   220 CSLGDAFRCGGCPYRGLPTFKVGEKIQLPDDFLVDDI 256

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|I3L704 CIAPIN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 50/89 (56%), Positives = 60/89 (67%)

Query:   187 KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLG 243
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + DQ+ + P+SACG+C LG
Sbjct:   226 KKPDPASLRAAPCGEGKKRKACKNCTCGLAEELEK-EK---SRDQMSSQPKSACGNCYLG 281

Query:   244 DAFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             DAFRC +CPY G+P FK GEKV LS++ L
Sbjct:   282 DAFRCASCPYLGMPAFKPGEKVLLSNSNL 310

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:1922083 Ciapin1 "cytokine induced apoptosis inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 44/88 (50%), Positives = 54/88 (61%)

Query:   187 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 244
             K+P   S+    C  G  RKACKNC CG AE  E+ +       Q   P+SACG+C LGD
Sbjct:   223 KRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKA----QSSQPKSACGNCYLGD 278

Query:   245 AFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             AFRC  CPY G+P FK GE+V LS++ L
Sbjct:   279 AFRCANCPYLGMPAFKPGEQVLLSNSNL 306

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

RGD|1549737 Ciapin1 "cytokine induced apoptosis inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 47/88 (53%), Positives = 54/88 (61%)

Query:   187 KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGD 244
             KKP   S+    C  G  RKACKNC CG AE  EK +       Q   P+SACG+C LGD
Sbjct:   223 KKPDPASLKAPSCGEGKKRKACKNCTCGLAEELEKEQSKA----QSSQPKSACGNCYLGD 278

Query:   245 AFRCGTCPYKGLPPFKLGEKVSLSSNFL 272
             AFRC  CPY G+P FK GE+V LSS+ L
Sbjct:   279 AFRCANCPYLGMPAFKPGEQVLLSSSNL 306

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

ZFIN|ZDB-GENE-040808-57 ciapin1 "cytokine induced apoptosis inhibitor 1" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 48/92 (52%), Positives = 57/92 (61%)

Query:   187 KKPQLPSV-GDCEVGSTRK--ACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLG 243
             KKP   S+   C   S +K  ACKNC CG AE  E+  K      Q   P+SACG+C LG
Sbjct:   261 KKPDPSSLKASCGDDSKKKKKACKNCTCGLAEELEQESKAAQKASQ---PKSACGNCYLG 317

Query:   244 DAFRCGTCPYKGLPPFKLGEKVSLSSNFLVAD 275
             DAFRCG+CPY G+P FK GEKV L+ N  +AD
Sbjct:   318 DAFRCGSCPYLGMPAFKPGEKVLLA-NTDIAD 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

TAIR|locus:4515103586 AT5G18362 "AT5G18362" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/98 (50%), Positives = 61/98 (62%)

Query:   142 KGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXXXXXKKPQLPSVGDCEVGS 201
             +GKK +WKIGSSFA+KK  K L K  +                  KKPQ+P+   CE  +
Sbjct:    11 EGKKNSWKIGSSFALKKPAKFLLKDNLDDDLDLIDEDSLLTEDDLKKPQVPAASGCE--T 68

Query:   202 TRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGS 239
              +KACKNC+CGR E E K  KLGLT DQ++NPQS+CGS
Sbjct:    69 PKKACKNCVCGRDEIERKAVKLGLTEDQIENPQSSCGS 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XPW7	DRE22_ORYSJ	No assigned EC number	0.5872	0.8224	0.8598	yes	no
A2XYW4	DRE21_ORYSI	No assigned EC number	0.5669	0.8876	0.9245	N/A	no
B8ARI7	DRE22_ORYSI	No assigned EC number	0.5669	0.8876	0.9280	N/A	no
Q5EAC7	CPIN1_BOVIN	No assigned EC number	0.3769	0.9239	0.8225	yes	no
Q6FI81	CPIN1_HUMAN	No assigned EC number	0.3589	0.9637	0.8525	yes	no
A9PBH9	DRE2_POPTR	No assigned EC number	0.7050	0.9963	0.9927	yes	no
O15692	DRE2_DICDI	No assigned EC number	0.3510	0.8876	0.9570	yes	no
O74821	DRE2_SCHPO	No assigned EC number	0.3135	0.9239	0.8854	yes	no
Q8L7Z3	DRE2_ARATH	No assigned EC number	0.5812	0.9818	0.9963	yes	no
B9RBT0	DRE2_RICCO	No assigned EC number	0.6787	0.9891	0.9963	N/A	no
D1I234	DRE2_VITVI	No assigned EC number	0.7352	0.9782	0.9926	yes	no
B6TB21	DRE2_MAIZE	No assigned EC number	0.5583	0.9311	0.9771	N/A	no
B8LPG7	DRE22_PICSI	No assigned EC number	0.5034	0.9456	0.9422	N/A	no
B7FNA9	DRE2_MEDTR	No assigned EC number	0.6376	0.9601	1.0	N/A	no
Q7XQ97	DRE21_ORYSJ	No assigned EC number	0.5522	0.9239	0.9622	yes	no
C3YFB4	DRE2_BRAFL	No assigned EC number	0.3161	0.8985	0.8025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam05093	97	pfam05093, CIAPIN1, Cytokine-induced anti-apoptosi	1e-34
COG5636	284	COG5636, COG5636, Uncharacterized conserved protei	2e-21
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	4e-08

>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

 Score =  120 bits (302), Expect = 1e-34
 Identities = 46/97 (47%), Positives = 54/97 (55%), Gaps = 13/97 (13%)

Query: 184 EDLKKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQ-----------L 230
           EDLKKP   ++       G  RKACKNC CG AE EE+ +K      Q           +
Sbjct: 1   EDLKKPDPVTLRKCGPGPGKKRKACKNCTCGLAEEEEQEKKDKSAAQQQKVEDDLAEITV 60

Query: 231 KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL 267
           +   S+CG+C LGDAFRC  CPY GLP FK GEKV L
Sbjct: 61  EGKTSSCGNCYLGDAFRCSGCPYLGLPAFKPGEKVKL 97

Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS). CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis. Dre2 has been found to interact with the yeast reductase Tah18, forming a tight cytosolic complex implicated in the response to high levels of oxidative stress. Length = 97

>gnl|CDD|227923 COG5636, COG5636, Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

 Score = 90.6 bits (224), Expect = 2e-21
 Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 85  LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGK 144
           L+ G  +  +KK          + S L  K   +     +          ++ +     +
Sbjct: 79  LQSGSKLPTFKK-------ASSSTSNLPKKADHSRQPIVKETDSFKPPSFKMTTEPKVYR 131

Query: 145 KPTWKIGSSFAIKKAPKSLAK--LQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
                +     ++K  +S A+  ++ D D   I ED LL E+   K    S         
Sbjct: 132 VVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQRSECPPSKTKK 191

Query: 203 RKACKNCICGRAEAEE-------KVEKLGLTMDQLKNPQ--------SACGSCGLGDAFR 247
           ++ACK+C CG  E EE       + + +  T D+L            SACG+C LGDAFR
Sbjct: 192 KRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFR 251

Query: 248 CGTCPYKGLPPFKLGEKVSLSSN 270
           C  CPY GLP F+ G+ VS S N
Sbjct: 252 CSGCPYLGLPAFEPGDVVSFSMN 274

Length = 284

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 30 DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 86
          DL  E +                  LP    S D V+S    H LP  ++ L EI+RVLK
Sbjct: 26 DLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLK 85

Query: 87 PGGTILI 93
          PGG ++I
Sbjct: 86 PGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG4020	257	consensus Protein DRE2, required for cell viabilit	100.0
PF05093	100	CIAPIN1: Cytokine-induced anti-apoptosis inhibitor	100.0
COG5636	284	Uncharacterized conserved protein, contains Zn-rib	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.53
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.47
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.31
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.24
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.21
PLN02244	340	tocopherol O-methyltransferase	99.21
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.2
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.15
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.13
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.06
PLN02490	340	MPBQ/MSBQ methyltransferase	99.03
PLN02336	475	phosphoethanolamine N-methyltransferase	99.01
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.88
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.87
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.85
PRK08317	241	hypothetical protein; Provisional	98.83
KOG4300	252	consensus Predicted methyltransferase [General fun	98.83
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.8
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.78
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.73
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.71
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.67
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.66
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.65
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.65
PRK11207	197	tellurite resistance protein TehB; Provisional	98.62
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.6
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.59
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.57
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.55
PRK05785	226	hypothetical protein; Provisional	98.54
PRK12335	287	tellurite resistance protein TehB; Provisional	98.53
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.52
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.51
PRK06922	677	hypothetical protein; Provisional	98.47
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.43
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.42
PRK04266	226	fibrillarin; Provisional	98.41
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.41
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.36
KOG2940	325	consensus Predicted methyltransferase [General fun	98.33
COG2521	287	Predicted archaeal methyltransferase [General func	98.33
PLN03075	296	nicotianamine synthase; Provisional	98.32
PLN02336	475	phosphoethanolamine N-methyltransferase	98.32
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.27
PRK14967	223	putative methyltransferase; Provisional	98.26
PTZ00146	293	fibrillarin; Provisional	98.26
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.25
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.21
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.2
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.19
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.11
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.1
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.07
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.07
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.02
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.02
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.01
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.99
PRK06202	232	hypothetical protein; Provisional	97.97
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.95
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.95
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.92
PRK14968	188	putative methyltransferase; Provisional	97.92
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.9
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.88
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.88
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.86
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.83
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.83
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.81
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.77
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.77
KOG3010	261	consensus Methyltransferase [General function pred	97.77
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.75
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.74
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.7
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.67
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.64
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.64
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.62
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.6
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.59
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.56
PRK00811	283	spermidine synthase; Provisional	97.5
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.48
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.46
COG4123	248	Predicted O-methyltransferase [General function pr	97.46
PRK01581	374	speE spermidine synthase; Validated	97.46
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.44
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.43
TIGR00438	188	rrmJ cell division protein FtsJ.	97.42
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.41
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.4
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.39
TIGR03438	301	probable methyltransferase. This model represents	97.38
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.37
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.35
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.34
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.32
PRK03612	521	spermidine synthase; Provisional	97.3
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.29
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.26
PRK07402	196	precorrin-6B methylase; Provisional	97.25
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.24
KOG2361	264	consensus Predicted methyltransferase [General fun	97.23
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.22
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.2
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.17
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.15
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.07
PLN02366	308	spermidine synthase	97.06
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.03
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.02
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.0
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.99
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.96
KOG1331	293	consensus Predicted methyltransferase [General fun	96.82
PHA03411	279	putative methyltransferase; Provisional	96.81
PRK04457	262	spermidine synthase; Provisional	96.8
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.78
COG4798	238	Predicted methyltransferase [General function pred	96.77
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.73
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.65
PRK00536	262	speE spermidine synthase; Provisional	96.61
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.61
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.52
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.51
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.48
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.46
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.43
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.4
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.29
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.26
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.18
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.09
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.09
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.05
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.03
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.03
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.97
PLN02823	336	spermine synthase	95.92
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	95.91
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.89
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.85
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.84
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.83
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.72
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.65
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.62
KOG1271	227	consensus Methyltransferases [General function pre	95.49
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.39
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.36
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.16
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.08
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	95.01
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.63
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.61
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	94.59
KOG2899	288	consensus Predicted methyltransferase [General fun	94.56
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	94.39
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.32
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.23
PLN02672	1082	methionine S-methyltransferase	93.68
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	93.65
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	93.35
COG4262	508	Predicted spermidine synthase with an N-terminal m	93.24
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	93.08
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	92.74
PRK13699	227	putative methylase; Provisional	92.63
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	92.37
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	92.24
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	92.19
COG4122	219	Predicted O-methyltransferase [General function pr	92.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	92.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.63
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	91.57
PLN02476	278	O-methyltransferase	91.43
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.28
PHA03412	241	putative methyltransferase; Provisional	90.84
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	90.5
PRK11524	284	putative methyltransferase; Provisional	90.39
COG2890	280	HemK Methylase of polypeptide chain release factor	90.11
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	89.61
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	89.4
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	88.5
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	88.14
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	87.98
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	87.53
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	86.69
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	85.94
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.86
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	85.76
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	85.61
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	84.49
PLN02589	247	caffeoyl-CoA O-methyltransferase	83.71
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	82.62
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	82.28
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	82.0

>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]

Probab=100.00  E-value=4.3e-53  Score=362.83  Aligned_cols=200  Identities=39%  Similarity=0.573  Sum_probs=136.3

Q ss_pred             CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhcccccC
Q 023870           54 PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP  133 (276)
Q Consensus        54 p~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~  133 (276)
                      .++.++||+.+...  .+...-.+....+..|+|+|.+.+.+..-    ...    .+.....+.|+..+......-.+.
T Consensus        46 t~~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~gtl~v~s~~g----~~~----~~l~~~~i~g~~~~~~~s~d~~s~  115 (257)
T KOG4020|consen   46 TLENARYELLTPEA--ATLSGLKVKSLLRASLKPEGTLSVLSHIG----HAD----DLLLFVKITGEKDYCWISPDVSSA  115 (257)
T ss_pred             cccccceeccchhh--ccccccchhhhhhcccCccceEehhhhcc----chh----hHHHHHHHhCCccccccCcccccc
Confidence            34577888555433  12222256666778999999999887542    111    344567888888753322111000


Q ss_pred             CceeEEEEeeccCCCCcCCccccccCc--------ccccccc--CCCCCCccCccccCCccccCCCCCCCCC-CCCCCCc
Q 023870          134 AEVVSFGVKGKKPTWKIGSSFAIKKAP--------KSLAKLQ--VDDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGST  202 (276)
Q Consensus       134 ~~~~~~~i~akKP~~~~g~~~~~~~~~--------~~~~~~~--~~~d~~lided~Ll~~~d~~~p~~~~~~-~C~~~~~  202 (276)
                      +.+        |++....++..+....        ++....+  .|.++|+||||+||++||+.+|++.+.. .|++++|
T Consensus       116 ~ql--------kl~~~K~ss~~~q~a~k~~~~knl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kK  187 (257)
T KOG4020|consen  116 NQL--------KLSITKKSSPSLQSASKNAAAKNLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKK  187 (257)
T ss_pred             ccc--------cccceeccCcccccccccHHHHHhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCccc
Confidence            111        2222222322221111        1111122  2334799999999999999999988776 8999999


Q ss_pred             ccCCCCCccchHHHHHHHHhcCCCccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCccccc
Q 023870          203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA  274 (276)
Q Consensus       203 ~kack~ctcG~ae~~~~~~~~~~~~~~~~~~~ssCg~C~lGDAFRC~~CPy~G~PaFkpGe~v~l~~~~l~~  274 (276)
                      ||||||||||+||++|.|..   ......+++|+||||||||||||+||||||||||||||+|.|+++.+..
T Consensus       188 kkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s~CGnCylGdaFrCs~CPylG~PafkPGe~v~ls~~~~~~  256 (257)
T KOG4020|consen  188 KKACKNCTCGLAEEEEKEKS---REQISSNPKSACGNCYLGDAFRCSGCPYLGMPAFKPGEKVLLSDNSDKE  256 (257)
T ss_pred             chhhhcCCcccHHHHHhhhh---hhhhccCcccccCcccccccceecCCCcCCCCCCCCCCeEEeccccccc
Confidence            99999999999999997742   2223457999999999999999999999999999999999999987653

>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis

Probab=100.00  E-value=1.2e-49  Score=303.92  Aligned_cols=84  Identities=61%  Similarity=1.085  Sum_probs=71.9

Q ss_pred             cccCCCCCCCCCCCCCC--CcccCCCCCccchHHHHHHHHhcC---------CCccc-----cCCCCCCCCCCCCCCccc
Q 023870          184 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKLG---------LTMDQ-----LKNPQSACGSCGLGDAFR  247 (276)
Q Consensus       184 ~d~~~p~~~~~~~C~~~--~~~kack~ctcG~ae~~~~~~~~~---------~~~~~-----~~~~~ssCg~C~lGDAFR  247 (276)
                      |||++|.+..+.+|+++  +||||||||||||||+++++.+..         ++.++     +.+++|||||||||||||
T Consensus         1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR   80 (100)
T PF05093_consen    1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR   80 (100)
T ss_pred             CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence            68999998888899977  999999999999999998765321         22222     346899999999999999


Q ss_pred             cCCCCCCCCCCCCCCCeEEe
Q 023870          248 CGTCPYKGLPPFKLGEKVSL  267 (276)
Q Consensus       248 C~~CPy~G~PaFkpGe~v~l  267 (276)
                      |+||||||||||||||+|+|
T Consensus        81 Ca~CPYlGlPaFkpGe~V~l  100 (100)
T PF05093_consen   81 CAGCPYLGLPAFKPGEKVKL  100 (100)
T ss_pred             ecCCCcCCCCCCCCCCeecC
Confidence            99999999999999999987

It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].

>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

Probab=100.00  E-value=3.5e-44  Score=305.36  Aligned_cols=193  Identities=32%  Similarity=0.461  Sum_probs=122.0

Q ss_pred             CCCCceeEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhccccc
Q 023870           55 VESFSIDTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVV  132 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~  132 (276)
                      .+-+.||.+++..-...|..  ...|++..--|.|||.|-..--......       .+.....++|...+...  .++.
T Consensus        47 ~~IN~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t--~~~~  117 (284)
T COG5636          47 EIINEPDYCWIKMDSSKLNQTVSIPLKKKKTNLQSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKET--DSFK  117 (284)
T ss_pred             hhccCCceEEEEcccchhhccccchhhhhhcccCCCCcccceeccccccc-------cccchhhhcCCceeecC--cccc
Confidence            34568888887543322322  4567777778999999965443321111       23333444554433222  1122


Q ss_pred             CCceeEEEEeeccCCCCcCCccccccCcc---------------c--cccccCCCCCCccCccccCCccccCCCCCCCCC
Q 023870          133 PAEVVSFGVKGKKPTWKIGSSFAIKKAPK---------------S--LAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVG  195 (276)
Q Consensus       133 ~~~~~~~~i~akKP~~~~g~~~~~~~~~~---------------~--~~~~~~~~d~~lided~Ll~~~d~~~p~~~~~~  195 (276)
                      +.++            .+ .+.|.+.+.+               +  ..-+..|+|+++|+||+||+|+--.+.+.  ..
T Consensus       118 ~~~~------------k~-~t~P~~~~~~d~~~edk~~~~~~l~S~~q~~~~~dtd~~~i~edEllde~s~d~~i~--~~  182 (284)
T COG5636         118 PPSF------------KM-TTEPKVYRVVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQ--RS  182 (284)
T ss_pred             CCCc------------cc-eecceEEeecccccccHHHHHHHHhhhhHhhhccCCChhhhhhhhhhccccccceee--cc
Confidence            1111            11 0112111110               0  00123577889999999999953222221  24


Q ss_pred             CCCC--CCcccCCCCCccchHHHHHHH-------HhcCCCccccCC--------CCCCCCCCCCCCccccCCCCCCCCCC
Q 023870          196 DCEV--GSTRKACKNCICGRAEAEEKV-------EKLGLTMDQLKN--------PQSACGSCGLGDAFRCGTCPYKGLPP  258 (276)
Q Consensus       196 ~C~~--~~~~kack~ctcG~ae~~~~~-------~~~~~~~~~~~~--------~~ssCg~C~lGDAFRC~~CPy~G~Pa  258 (276)
                      .|.+  ++|+|||||||||++|+||.+       +.+|||+.++.+        ++|+||||||||||||+|||||||||
T Consensus       183 ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt~Q~~~VK~Te~~~~e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPa  262 (284)
T COG5636         183 ECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPA  262 (284)
T ss_pred             cCCCCcchhhhhcccCCccchhhhhhhhhhhhhhhheeccccceeeeeeeeccccccccccccccccceecCCCccCCCC
Confidence            6875  589999999999999999854       357888776542        47999999999999999999999999


Q ss_pred             CCCCCeEEecCcc
Q 023870          259 FKLGEKVSLSSNF  271 (276)
Q Consensus       259 FkpGe~v~l~~~~  271 (276)
                      |+||+.|.+..|.
T Consensus       263 f~PGd~v~~~~nl  275 (284)
T COG5636         263 FEPGDVVSFSMNL  275 (284)
T ss_pred             CCCCceeeeeccc
Confidence            9999999887653

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=7.1e-14  Score=124.42  Aligned_cols=97  Identities=23%  Similarity=0.265  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      +++|++||+|..|.+--+.              ++.+.|++.|+++....+.. ++|+++|+++|||++++||+|++.+.
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg  128 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG  128 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence            4479999999988863321              23389999999998775544 99999999999999999999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCCC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTSD  100 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~  100 (276)
                      ++++++ +.+|+|++|||||||++++.+.....
T Consensus       129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~  161 (238)
T COG2226         129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD  161 (238)
T ss_pred             hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence            999999 99999999999999999999987643

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.47  E-value=1.7e-13  Score=122.01  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+.|.+||++..|.+.-...               +.+.|++.|+++....+. ++.++++|++++||++++||+|++.+
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            56789999999888643222               239999999998876543 69999999999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .++.+++ ..+++|++|+|||||+|++.++..
T Consensus       125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  125 GLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            9999998 899999999999999999999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.32  E-value=2.4e-11  Score=109.83  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=78.8

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhh----CCCCeEEEeccCCCCCCCCCceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQ----CDPQIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~----~~~~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      ++.|++||+++.|.+....               ++.+.|++.|+++...    ...++.+++++++++|+++++||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            5678999999988874321               1227888888766431    22358899999999999999999999


Q ss_pred             eccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           65 SISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        65 s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      +.+++|++++ ..+++|++|+|||||+|++.++...
T Consensus       151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            9999999988 8999999999999999999998753

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=1.5e-11  Score=103.29  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhhhhC----CCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           23 AVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        23 ~v~~~m~~~A~~~~~~~----~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++.+.|++.|+++....    ..++.++++|++++|+++++||+|++.+++|++++ ..++++++|+|||||.|++.++.
T Consensus         4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~   83 (160)
T PLN02232          4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN   83 (160)
T ss_pred             cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            45678888887665322    23589999999999999999999999999999988 89999999999999999999886


Q ss_pred             C
Q 023870           98 T   98 (276)
Q Consensus        98 ~   98 (276)
                      .
T Consensus        84 ~   84 (160)
T PLN02232         84 K   84 (160)
T ss_pred             C
Confidence            5

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.24  E-value=2e-10  Score=103.92  Aligned_cols=123  Identities=20%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             CCCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEec
Q 023870            3 TGKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      .++.|++||+++.|.+..+.               ++.+.|++.|+++....+. ++.+..++++.+++++++||+|++.
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            36789999999988864311               1227888888887655443 5889999999999999999999999


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCC-c-hhHHH-------------HHHHHHHHHHHCCCcchhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSD-K-GDVDK-------------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~-~-~~~~~-------------~~~~l~~~l~laGF~~v~~  125 (276)
                      .++|++++ ..++++++|+|||||+|++.++.... . ..+..             ..+.+...+..+||..+..
T Consensus       154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence            99999887 88999999999999999998764321 1 01100             1235667788899987643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=5.9e-11  Score=88.80  Aligned_cols=67  Identities=30%  Similarity=0.440  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 023870           25 LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI   93 (276)
Q Consensus        25 ~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i   93 (276)
                      .+.|++.++++....  .+.+.+++++.+|+++++||+|++..++||+++ ..++++++|+|||||+++|
T Consensus        28 ~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   28 SEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHhccccc--CchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            366777777765433  355999999999999999999999999999977 8999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.21  E-value=1.2e-10  Score=109.10  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=78.8

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+.+||+|+.|.+..+..+             .+.|++.+++++...+.  ++.++++|+.++|+++++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            67889999999987543322             27788888776655443  5899999999999999999999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +|+++ ..++++++|+|||||+|++.++..
T Consensus       197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        197 EHMPDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             hccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            99988 889999999999999999988753

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.20  E-value=2.5e-10  Score=103.32  Aligned_cols=122  Identities=15%  Similarity=0.150  Sum_probs=91.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .++++.+||.|+.|.+..+..+.             +.|++.|+++... ..++.+..+|+...|+++++||+|++..++
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l  127 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAI  127 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhH
Confidence            36789999999999876544332             6778888776543 345889999999999999999999998887


Q ss_pred             ccCC--h-HHHHHHHHHhccCCcEEEEEecCCCCchh----HHH----------HHHHHHHHHHHCCCcchhh
Q 023870           70 HELP--G-DQLLEEISRVLKPGGTILIYKKLTSDKGD----VDK----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        70 ~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~----~~~----------~~~~l~~~l~laGF~~v~~  125 (276)
                      +|++  + ..++++++|+|||||+|++.++.......    ...          ....+...|..+||..+..
T Consensus       128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~  200 (263)
T PTZ00098        128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA  200 (263)
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence            7775  4 78999999999999999999875432111    111          1135566788888887654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.15  E-value=4.3e-10  Score=100.10  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             CCCCcEEEEccCCCCc----H----------------HHHHHHHHHHHHHhhhhC----CCCeEEEeccCCCCCCCCCce
Q 023870            5 KMQSAVLALSEDKILP----V----------------SAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~----~----------------~~v~~~m~~~A~~~~~~~----~~~v~~~~~d~~~lp~~~~sf   60 (276)
                      ..|++||++..|.+--    +                -++.+.|++.+++|+...    ...+.|+.+|+++|||++++|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            4578889887776411    1                123378999988877432    334899999999999999999


Q ss_pred             eEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           61 DTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        61 D~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      |..++.+.+..+++ +.+|+|+||||||||+|++.++.+.
T Consensus       179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv  218 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV  218 (296)
T ss_pred             eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            99999999988887 9999999999999999999998763

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.13  E-value=1e-09  Score=96.57  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=77.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.|.+||+++.|.+..+..+.               +.|++.++++....+. ++.++.++++.+++++++||+|++.+
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence            5678999999998875433222               6788888777654443 48899999999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .+|++++ ..++++++|+|||||++++.+...
T Consensus       123 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       123 GLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             ccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            9999887 889999999999999999887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.06  E-value=9.6e-10  Score=98.24  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             CCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+.+||+++.|.+.-...            +.+.|++.++++..    ...++.+|++.+|+++++||+|+++.++||++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~  117 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLATATFDLAWSNLAVQWCG  117 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCCCCcEEEEEECchhhhcC
Confidence            467899999988643222            22778888876532    24678899999999999999999999999998


Q ss_pred             h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHH
Q 023870           74 G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISA  110 (276)
Q Consensus        74 ~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~  110 (276)
                      + ..++.+++|+|||||.|++..+..++..++...|..
T Consensus       118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~  155 (251)
T PRK10258        118 NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA  155 (251)
T ss_pred             CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence            7 899999999999999999999887766666555544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.03  E-value=3e-09  Score=99.71  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             CCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +.+.+||.++.|.+.-...+              .+.|++.|+++...  .++.++.+|++++++++++||+|++..++|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIIEGDAEDLPFPTDYADRYVSAGSIE  189 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--cCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence            46789999998886432222              26788888776432  347789999999999999999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecCCCC--chh-HHH------HHHHHHHHHHHCCCcchhhhhcccccCC-----c
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSD--KGD-VDK------AISALEGKLLLAGFLDAQRIQLKSVVPA-----E  135 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~--~~~-~~~------~~~~l~~~l~laGF~~v~~~~~~~~~~~-----~  135 (276)
                      ++++ ..++++++|+|||||++++.......  ... ...      ..+++...+..+||..++.....+....     +
T Consensus       190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~  269 (340)
T PLN02490        190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG  269 (340)
T ss_pred             hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence            9887 88999999999999999887543211  000 000      1246677899999997654432221111     1


Q ss_pred             -eeEEEEeeccCCC
Q 023870          136 -VVSFGVKGKKPTW  148 (276)
Q Consensus       136 -~~~~~i~akKP~~  148 (276)
                       +-...++++||..
T Consensus       270 ~~~~~~v~~~k~~~  283 (340)
T PLN02490        270 LIMGCSVTGVKPAS  283 (340)
T ss_pred             ceeeEEEEEecccc
Confidence             1345578888764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.01  E-value=4.9e-09  Score=102.14  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=90.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||+|+.|.+..+..+             .+.|++.|+++.......+.+.++|+..+++++++||+|++..+++
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            467889999999987542222             2778888877665445568999999999999999999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecCCCCc---hhHHH----------HHHHHHHHHHHCCCcchh
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK----------AISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~~~----------~~~~l~~~l~laGF~~v~  124 (276)
                      |+++ ..++++++|+|||||+|++.++.....   .....          ..+.+...+..+||..+.
T Consensus       344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~  411 (475)
T PLN02336        344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI  411 (475)
T ss_pred             ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeee
Confidence            9988 899999999999999999998754211   11111          123456677888888653

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.88  E-value=5.9e-09  Score=97.14  Aligned_cols=94  Identities=12%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             CCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..|.+||+|+.|.+..+..            +.+.|++.|+++.....  .++.+++++++++++++++||+|++..+++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            3677999999999865432            23888888887654332  358899999999998889999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      |+.+ ..++++++|+|||||.|++.+...
T Consensus       210 Hv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        210 HVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             hcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            9988 999999999999999999998653

>TIGR00740 methyltransferase, putative

Probab=98.87  E-value=2.9e-08  Score=88.20  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHH----------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAV----------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v----------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      ++.+.+||+++.|.+..+..+                .+.|++.|+++....+  .++.++++++..++++  .+|+|++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence            467889999999887543211                2788999988765533  3588999999998876  4899999


Q ss_pred             ccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+++||+++   ..++++++|+|||||.|++.++.
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            999999874   67999999999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.85  E-value=3.6e-08  Score=88.34  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             CCCCCcEEEEccCCCCcHHH----------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSA----------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~----------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      ++.+.+||+++.|.+.....                ..+.|++.|+++....+.  ++.++++++..+|++  .||+|++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~  131 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL  131 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence            56889999999988754321                228999999888765443  588999999988875  4999999


Q ss_pred             ccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++|++++   ..++++++|+|||||.|++.+..
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            999999875   57999999999999999999854

>PRK08317 hypothetical protein; Provisional

Probab=98.83  E-value=7e-08  Score=84.17  Aligned_cols=94  Identities=23%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+++||.++.|.+.-+..+.               +.|++.++++......++.+..+++..++++.++||+|++...
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~   96 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV   96 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence            5678999999998875444333               3455666665333445688999999999999999999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++.+ ..++++++++|||||.+++.+..
T Consensus        97 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         97 LQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            999887 88999999999999999988753

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=2.1e-08  Score=87.01  Aligned_cols=86  Identities=20%  Similarity=0.350  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhhh-CCCCeE-EEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc
Q 023870           26 NAIRDLGDEAVEQ-CDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK  101 (276)
Q Consensus        26 ~~m~~~A~~~~~~-~~~~v~-~~~~d~~~lp-~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~  101 (276)
                      +.|.+++.+++.. ...++. |+.++.+++| +++.|||+|++.+.++...+ .+.|+++.|+|||||++++.++..+.-
T Consensus       109 ~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y  188 (252)
T KOG4300|consen  109 EKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY  188 (252)
T ss_pred             HHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence            5555555554433 234566 8999999999 99999999999999998888 899999999999999999999987533


Q ss_pred             hhHHHHHHHH
Q 023870          102 GDVDKAISAL  111 (276)
Q Consensus       102 ~~~~~~~~~l  111 (276)
                      +-+...|++.
T Consensus       189 ~~~n~i~q~v  198 (252)
T KOG4300|consen  189 GFWNRILQQV  198 (252)
T ss_pred             hHHHHHHHHH
Confidence            3345555443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.80  E-value=1.5e-08  Score=90.96  Aligned_cols=94  Identities=13%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCC-CCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLP-VESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp-~~~~sfD~V~s~~~l   69 (276)
                      +.+.+||.++.|.+.-+..+            .+.|++.|+++....+.  ++.++++++.+++ +.+++||+|++..++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            45678999999987543322            28899999887766553  5789999998774 678899999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ||+.+ ..++++++|+|||||+|++..+..
T Consensus       123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        123 EWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             HhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            99987 889999999999999999876553

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.79  E-value=3.4e-08  Score=92.07  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh--hCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~--~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .|.+||+|+.|.+.-+..|.             ..|+..++....  ....++.++.++++++|+ +++||+|++..++|
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~  200 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence            47889999999876544343             345544332211  123468899999999998 88999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecCCCC-----chhHHH-----------HHHHHHHHHHHCCCcchhhhh
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSD-----KGDVDK-----------AISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~-----~~~~~~-----------~~~~l~~~l~laGF~~v~~~~  127 (276)
                      |+.+ ..++++++|+|||||.|++.++....     ..+...           ....+...|..+||..++...
T Consensus       201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence            9887 88999999999999999987643110     000000           134677889999999876543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.78  E-value=5.3e-08  Score=80.45  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=77.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~   66 (276)
                      +.+.+||+++.|.+.....+.               +.|++.|++++...+. ++.+.++|+.+++  ++ +.||+|++.
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence            567899999999875533333               7889999887766655 4999999999988  66 899999999


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .++|++.+ ..+++++++.||++|.+++.+..
T Consensus        81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999998 78999999999999999999876

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.73  E-value=4.1e-08  Score=88.13  Aligned_cols=87  Identities=15%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .+.+.+||+++.|.+.-...+.              +.|++.|+++      .+.++++|+++++ ++++||+|+++.++
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l   99 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhh
Confidence            3578899999999875443332              5677776542      3678889998875 56799999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ||+++ ..++++++++|||||+|++..+.
T Consensus       100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103        100 QWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            99988 88999999999999999987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.71  E-value=3.9e-07  Score=79.83  Aligned_cols=93  Identities=25%  Similarity=0.311  Sum_probs=73.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC--CCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      +.+.+||.++.|.+.-+..+.               +.|++.++++....  ..++.+..+++..++++.++||+|++..
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence            457899999988865433222               46667777665432  3457889999999888888999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+|++.+ ..++.++.++|+|||++++.+..
T Consensus       130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        130 GLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             ccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            8998887 88999999999999999988754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.71  E-value=1.7e-07  Score=81.93  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=73.5

Q ss_pred             CCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            7 QSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      +.+||.++.|.+.-...+              .+.|++.++++..   .++.++.++++.+++++++||+|++..++||+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~  111 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC  111 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence            468999988886432222              2556666665532   35788999999999999999999999999999


Q ss_pred             Ch-HHHHHHHHHhccCCcEEEEEecCCCCch
Q 023870           73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKG  102 (276)
Q Consensus        73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~  102 (276)
                      .+ ..++.+++++|||||.|++.++......
T Consensus       112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~  142 (240)
T TIGR02072       112 DDLSQALSELARVLKPGGLLAFSTFGPGTLH  142 (240)
T ss_pred             cCHHHHHHHHHHHcCCCcEEEEEeCCccCHH
Confidence            77 8899999999999999999988765443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.67  E-value=1.5e-07  Score=77.22  Aligned_cols=90  Identities=24%  Similarity=0.313  Sum_probs=63.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCC--------CCeEEEeccCCCCCCCCCceeEEEeccccccCCh-
Q 023870            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCD--------PQIITQASSLSQLPVESFSIDTVLSISSSHELPG-   74 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~--------~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-   74 (276)
                      .+.+.+||.++.|.+.-+    ..|..... ++....        ..+.....+....++++++||+|+++.++||+++ 
T Consensus        20 ~~~~~~vLDiGcG~G~~~----~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~   94 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFL----RALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP   94 (161)
T ss_dssp             TTTTSEEEEESSTTSHHH----HHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH
T ss_pred             cCCCCEEEEEcCCCCHHH----HHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH
Confidence            578999999999997433    23311100 000000        1122223333455678899999999999999998 


Q ss_pred             HHHHHHHHHhccCCcEEEEEecCC
Q 023870           75 DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        75 ~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..+|++++++|||||++++.++..
T Consensus        95 ~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   95 EEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCC
Confidence            999999999999999999999874

...

>TIGR00452 methyltransferase, putative

Probab=98.67  E-value=1.2e-07  Score=88.08  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh--hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~--~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..|.+||+|+.|.+.-...+.             +.|+..++....  .....+.+...+++++|.. .+||+|+++.++
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL  198 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL  198 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence            457889999998875433332             456654332111  1224577788889988864 489999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCCC-Cc-------hhHHH--------HHHHHHHHHHHCCCcchhhh
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLTS-DK-------GDVDK--------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~-~~-------~~~~~--------~~~~l~~~l~laGF~~v~~~  126 (276)
                      +|+++ ..+|++++|+|||||.|++.+..-. ..       ....+        ....+...|..+||.+++..
T Consensus       199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~  272 (314)
T TIGR00452       199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL  272 (314)
T ss_pred             hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence            99987 7899999999999999998764311 00       00110        12466778899999987644

Known examples to date are restricted to the proteobacteria.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.66  E-value=3.3e-08  Score=87.67  Aligned_cols=93  Identities=13%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             CCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .|.+||+|+.|.+.-++            ++.+.+++.|+.++...+..+.|.+..++++....++||+|+|.-+++|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            68899999888875433            445899999998888888888899999999887778999999999999999


Q ss_pred             h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           74 G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        74 ~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      + +.+++.+.+.+||||.+++++...
T Consensus       139 dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         139 DPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEecccc
Confidence            8 889999999999999999998763

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.65  E-value=1.8e-07  Score=80.90  Aligned_cols=90  Identities=14%  Similarity=0.070  Sum_probs=70.9

Q ss_pred             CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+.+||.++.|.+..+..+            .+.|++.+++++...+..+.+...++...+++ ++||+|+++.++|+++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~  108 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ  108 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence            4568999999987653322            27888888777766666677888888777765 5799999999999886


Q ss_pred             h---HHHHHHHHHhccCCcEEEEEec
Q 023870           74 G---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        74 ~---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .   ..++++++|+|||||++++.++
T Consensus       109 ~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477       109 AGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            3   7899999999999999777654

Part of a tellurite-reducing operon tehA and tehB

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.65  E-value=2e-07  Score=81.62  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             cEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            9 AVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         9 ~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      +||.|+.|.+..+..+              .+.|++.++++....+  .++.+...|+...|++ ++||+|++..++||+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            5778877766543322              2566677777765544  3478888998776765 489999999999999


Q ss_pred             Ch-HHHHHHHHHhccCCcEEEEEecCCCCchh-----HH---HHHHHHHHHHHHCCCcchhhh
Q 023870           73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKGD-----VD---KAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~-----~~---~~~~~l~~~l~laGF~~v~~~  126 (276)
                      .+ ..++++++++|||||++++.++.......     ..   -....+...+..+||..++..
T Consensus        81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828       81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            87 89999999999999999998864311000     00   012355667888999876544

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.62  E-value=2.9e-07  Score=79.78  Aligned_cols=90  Identities=19%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+..+..+            .+.|++.+++++...+.. +.+..+|+.+++++ .+||+|+++.++|+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~  107 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF  107 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence            35678999999987654322            277888888776665544 78888999888775 57999999999988


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ++.   ..++++++|+|||||++++..
T Consensus       108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        108 LEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            763   789999999999999975543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.60  E-value=1.6e-06  Score=75.06  Aligned_cols=92  Identities=22%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..+.+||.++.|.+.-...+.               +.+++.++++.. ...++.++.+++.+++++.+.||+|++...+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            367889999888765433222               456666655543 3345788899999998888899999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+..+ ..++++++++|+|||++++.+..
T Consensus       117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       117 RNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            98887 88999999999999999988754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.60  E-value=4.4e-07  Score=70.36  Aligned_cols=89  Identities=22%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh--hCCCCeEEEeccC-CCCCCCCCceeEEEecc-
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE--QCDPQIITQASSL-SQLPVESFSIDTVLSIS-   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~--~~~~~v~~~~~d~-~~lp~~~~sfD~V~s~~-   67 (276)
                      +|.+||+++.|.+.-...+.              +.|++.|+++..  ....++.++++|+ ....+ .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            57899999999875533222              789999988873  3456799999999 33333 44699999988 


Q ss_pred             ccccCC---h-HHHHHHHHHhccCCcEEEEEe
Q 023870           68 SSHELP---G-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~~~~---~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .++++.   . ..+++++++.|+|||+|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            555333   2 789999999999999999875

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.59  E-value=1.3e-06  Score=75.48  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.|.+||+++.|.+..+..+              .+.|++.|++++...+.. ++++.+++++++. .++||+|++..
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            4567899999999988643322              278888888877766653 8999999998887 77999999864


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                          +.+ +.++++++++|||||+|++.....     ..   ..+......+|..-
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----~~---~~l~~~~~~~~~~~  164 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----PE---EEIAELPKALGGKV  164 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----hH---HHHHHHHHhcCceE
Confidence                233 789999999999999999987542     11   13444566668763

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.57  E-value=9.5e-07  Score=81.41  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=71.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+++||+|+.|.+.-+..+.             +.|++.+++++...+.  +++++.+|+...+++.  +|+|+....
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~  224 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI  224 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence            4677899999988875433232             5678888777766553  4889999998766653  699998888


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++.+   ..++++++++|||||+|++.+..
T Consensus       225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            888865   46999999999999999999863

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.55  E-value=4e-07  Score=81.56  Aligned_cols=89  Identities=15%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.+.+||.++.|.+.-...+.              +.|++.|+++.    .++.++.+|+..+. +..+||+|+++.++
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l  103 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASL  103 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccCh
Confidence            4678899999998875432222              67788777663    34778889998765 45699999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ||+++ ..++++++++|||||+|++..+.
T Consensus       104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        104 QWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             hhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            99988 88999999999999999987543

>PRK05785 hypothetical protein; Provisional

Probab=98.54  E-value=8.5e-07  Score=78.60  Aligned_cols=77  Identities=19%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||+++.|.+.....+             .+.|++.|+++.       .+++++++++|+++++||+|++.+++|+
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhc
Confidence            35789999999987543222             277888776541       3578999999999999999999999999


Q ss_pred             CCh-HHHHHHHHHhccCC
Q 023870           72 LPG-DQLLEEISRVLKPG   88 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPg   88 (276)
                      +++ +.+++|++|+|||.
T Consensus       123 ~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        123 SDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             cCCHHHHHHHHHHHhcCc
Confidence            988 89999999999994

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.53  E-value=5.6e-07  Score=82.37  Aligned_cols=89  Identities=17%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             CCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh
Q 023870            7 QSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG   74 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~   74 (276)
                      +.+||+++.|.+..+.-+.            +.|++.+++++...+.++.+...|+...++ +++||+|++..++|+++.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~  199 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR  199 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence            4499999999987643332            788888888777777788888888887766 678999999999998863


Q ss_pred             ---HHHHHHHHHhccCCcEEEEEec
Q 023870           75 ---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        75 ---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                         ..++++++|+|+|||++++..+
T Consensus       200 ~~~~~~l~~~~~~LkpgG~~l~v~~  224 (287)
T PRK12335        200 ERIPAIIKNMQEHTNPGGYNLIVCA  224 (287)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence               7899999999999999776543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.52  E-value=7.6e-08  Score=74.05  Aligned_cols=67  Identities=25%  Similarity=0.434  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCc
Q 023870           23 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGG   89 (276)
Q Consensus        23 ~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~~~~~---~~~l~ei~rvLKPgG   89 (276)
                      ++.+.|++.++++....+.++.++++|+.++++.+++||+|++. .+++|+.+   ..++++++++|||||
T Consensus        31 D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   31 DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            34578888888887766778999999999999999999999995 44888875   789999999999998

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.51  E-value=5.9e-07  Score=81.96  Aligned_cols=92  Identities=18%  Similarity=0.232  Sum_probs=67.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+|+.|-+..+..+.             +...+.+++++...++.  +.+...|..+++.   +||.|+|+-
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~  135 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE  135 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence            47899999999999876644333             55677788877777653  8888888877654   999999999


Q ss_pred             ccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELP--G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++.|+.  + +.++++++|+|||||++++....
T Consensus       136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             chhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            999885  3 89999999999999999988764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06922 hypothetical protein; Provisional

Probab=98.47  E-value=6.1e-07  Score=89.95  Aligned_cols=92  Identities=21%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~~l   69 (276)
                      .|.+||+++.|.+..+..+.              +.|++.|+++....+.++.++++|+.++|  +++++||+|+++..+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence            57899999999875433222              57888888776555566788889998888  889999999999888


Q ss_pred             ccCC-------------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELP-------------G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~-------------~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++.             + ..++++++|+|||||++++.+..
T Consensus       498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            8652             2 68999999999999999999853

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.43  E-value=2.3e-06  Score=74.44  Aligned_cols=111  Identities=14%  Similarity=0.019  Sum_probs=79.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCC-CCeEEEeccC-CCCC--CCCCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCD-PQIITQASSL-SQLP--VESFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~-~~v~~~~~d~-~~lp--~~~~sfD~V~s~   66 (276)
                      +.+..||.++.|.+.....+.              +.|++.|+++....+ .++.++++++ +.++  +++++||+|+++
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            357789999888875433222              667888877665544 3588999999 7777  788899999997


Q ss_pred             cccccCC---------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           67 SSSHELP---------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        67 ~~l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      +...|..         ...++++++++|||||.|++.....       .....+...+..+||..
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~-------~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE-------GYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH-------HHHHHHHHHHHhCcccc
Confidence            6554432         2679999999999999999987542       11224556677788754

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.42  E-value=3.6e-06  Score=72.18  Aligned_cols=110  Identities=17%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             CCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            7 QSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      |.+||+++.|.+..+..              ..+.|++++++++...+. ++.++++++++++ ..++||+|++.. +++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~  120 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS  120 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC
Confidence            88999999988754221              126777777776655554 4899999999875 367999999865 332


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      +  ..+++.++++|||||++++..... ...+    +..+...+...||..+..
T Consensus       121 ~--~~~~~~~~~~LkpgG~lvi~~~~~-~~~~----~~~~~e~~~~~~~~~~~~  167 (181)
T TIGR00138       121 L--NVLLELTLNLLKVGGYFLAYKGKK-YLDE----IEEAKRKCQVLGVEPLEV  167 (181)
T ss_pred             H--HHHHHHHHHhcCCCCEEEEEcCCC-cHHH----HHHHHHhhhhcCceEeec
Confidence            2  578899999999999999885432 1111    224445677788876543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK04266 fibrillarin; Provisional

Probab=98.41  E-value=5.3e-06  Score=73.65  Aligned_cols=121  Identities=19%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             CCCCCCcEEEEccCCCCc---HHHH-----------HHHHHHHHHHhhhhCCCCeEEEeccCCCC----CCCCCceeEEE
Q 023870            3 TGKMQSAVLALSEDKILP---VSAV-----------LNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVL   64 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~---~~~v-----------~~~m~~~A~~~~~~~~~~v~~~~~d~~~l----p~~~~sfD~V~   64 (276)
                      .+++|++||.++.|.+.-   +...           .+.|++.+.+++... .++.++.+|+...    ++. ++||+|+
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~  146 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIY  146 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence            357899999999887642   1111           266666554443322 4578888888652    233 5699999


Q ss_pred             eccccccCChHHHHHHHHHhccCCcEEEEE------ecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhccc
Q 023870           65 SISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKS  130 (276)
Q Consensus        65 s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~------~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~  130 (276)
                      +.....+ ....++++++|+|||||+|++.      ++...    .....+.....+..+||..++.....+
T Consensus       147 ~d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~----~~~~~~~~~~~l~~aGF~~i~~~~l~p  213 (226)
T PRK04266        147 QDVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD----PKEIFKEEIRKLEEGGFEILEVVDLEP  213 (226)
T ss_pred             ECCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC----HHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            6533111 1145789999999999999993      33321    112223455789999999877665443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.41  E-value=1.2e-06  Score=79.46  Aligned_cols=89  Identities=21%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             CCCcEEEEccCCCCcHHH-----------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSA-----------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~-----------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .+.+||.++.|.+.-...                 +.+.|++.|+++.    .++.+.++++.++|+++++||+|++++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCCCcCCceeEEEEecC
Confidence            346789998887643222                 2255777765542    4578899999999999999999998764


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhH
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDV  104 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~  104 (276)
                      .      ..+++++|+|||||+|++..+...++.++
T Consensus       161 ~------~~~~e~~rvLkpgG~li~~~p~~~~l~el  190 (272)
T PRK11088        161 P------CKAEELARVVKPGGIVITVTPGPRHLFEL  190 (272)
T ss_pred             C------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence            2      34689999999999999998876554443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.36  E-value=6.2e-06  Score=70.02  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             CCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+.+||.++.|.+.-+..            +.+.|++.++++....+..+.++.+|+...+  ..+||+|+++..+++.+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence            456789998887643222            2278888888877666667888888886644  45999999987765443


Q ss_pred             h----------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           74 G----------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        74 ~----------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      +                      ..++++++|+|||||++++........       ..+...+...||...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~-------~~~~~~l~~~gf~~~  161 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE-------PDTFDKLDERGFRYE  161 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh-------HHHHHHHHhCCCeEE
Confidence            2                      357999999999999999987653211       144566788898743

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=4.1e-07  Score=80.24  Aligned_cols=81  Identities=12%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhH
Q 023870           26 NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDV  104 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~  104 (276)
                      --|++.++. ++..+..+++.++|.+.|+|.+++||+|+++.++||..+ +..+.++..+|||.|.|+-+.++..+++++
T Consensus       105 ~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  105 YDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hHHHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence            456655533 223344577889999999999999999999999999998 999999999999999999999888788777


Q ss_pred             HHH
Q 023870          105 DKA  107 (276)
Q Consensus       105 ~~~  107 (276)
                      +.+
T Consensus       184 R~s  186 (325)
T KOG2940|consen  184 RCS  186 (325)
T ss_pred             HHH
Confidence            653

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.33  E-value=6.7e-07  Score=79.02  Aligned_cols=125  Identities=17%  Similarity=0.172  Sum_probs=78.9

Q ss_pred             CCCCCCcEEEEccCCCCcH-HHHH------------HHHHHHHHHhh--hh-CCCCeEEEeccCCCC--CCCCCceeEEE
Q 023870            3 TGKMQSAVLALSEDKILPV-SAVL------------NAIRDLGDEAV--EQ-CDPQIITQASSLSQL--PVESFSIDTVL   64 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~-~~v~------------~~m~~~A~~~~--~~-~~~~v~~~~~d~~~l--p~~~~sfD~V~   64 (276)
                      +++.|.+||+.-.|-+-.+ +.+.            +..+++|.-+-  .. ....+..+.+|+.++  .|++++||+|+
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            4677999999988876332 1111            11112221100  00 112367788888655  58999999998


Q ss_pred             ec---ccc-ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           65 SI---SSS-HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        65 s~---~~l-~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                      --   +++ -++...++..|++|+|||||+++.....++....-......+-+.|...||..+....
T Consensus       211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~  277 (287)
T COG2521         211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR  277 (287)
T ss_pred             eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence            62   211 2344589999999999999999999887764321111223566789999999876554

>PLN03075 nicotianamine synthase; Provisional

Probab=98.32  E-value=3.6e-06  Score=77.47  Aligned_cols=88  Identities=11%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             CCCcEEEEccCCCCcHHH-----------------HHHHHHHHHHHhhhh-CC--CCeEEEeccCCCCCCCCCceeEEEe
Q 023870            6 MQSAVLALSEDKILPVSA-----------------VLNAIRDLGDEAVEQ-CD--PQIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~-----------------v~~~m~~~A~~~~~~-~~--~~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      ...+|+.|+.|.. |...                 +.+.|.+.|++.+.. .+  ..+.|.++|+.+++-....||+|++
T Consensus       123 ~p~~VldIGcGpg-pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPL-PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCc-HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            6788999999954 2111                 126778888887643 33  3599999999876434578999999


Q ss_pred             ccccccCC--h-HHHHHHHHHhccCCcEEEEEe
Q 023870           66 ISSSHELP--G-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        66 ~~~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      . ++|++.  + .+++.++++.|+|||.|++..
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9 777773  4 899999999999999999987

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.32  E-value=4.5e-06  Score=81.40  Aligned_cols=119  Identities=15%  Similarity=0.105  Sum_probs=83.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCC--CCCCCCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~--~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .+.+||.++.|.+.....+.            +.|++.+++.. ....++.++++++.  .+++++++||+|++..++||
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence            46789999999875433222            66776654422 22345888899986  56888899999999999999


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCCCCchh--------HHHHHHHHHHHHHHCCCcchhh
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLTSDKGD--------VDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~--------~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      +++   ..++++++|+|||||+|++.+.......+        .-.....+.+.+..+||.....
T Consensus       116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  180 (475)
T PLN02336        116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG  180 (475)
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence            986   67999999999999999998754321100        0011234556688888886543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.28  E-value=8.8e-06  Score=71.01  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCC-CCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~   71 (276)
                      .+.+||.++.|.+.-...+            .+.|++.++++....+. ++.+..+++..++.. .++||+|++...+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            4788999998876533322            15677777776655555 578888888877654 378999999998998


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.+ ..+++++.++|+|||.+++..+.
T Consensus       125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            887 88999999999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.27  E-value=1.2e-05  Score=70.85  Aligned_cols=93  Identities=12%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCC-CCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+.....+            .+.+++.++++....+..+.+...++..++ ...+.||+|++...+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            46788999998876443323            256667777666555556778888887765 34579999999988888


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++ ..+++.+.++|+|||++++..+.
T Consensus       127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        127 VPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            877 88999999999999999998764

>PRK14967 putative methyltransferase; Provisional

Probab=98.26  E-value=2.8e-05  Score=68.42  Aligned_cols=93  Identities=18%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.|++||.++.|.+.-+..             +.+.|++.+++++...+.++.++.+|+.. .+++++||+|+++..++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence            46788999998887532211             22677787777766656667888888865 35678999999975432


Q ss_pred             cCC----------------------hHHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELP----------------------GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~----------------------~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ...                      -..++++++++|||||+|++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            110                      035778899999999999986543

>PTZ00146 fibrillarin; Provisional

Probab=98.26  E-value=2.5e-05  Score=71.80  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=76.0

Q ss_pred             CCCCCcEEEEccCCCCc---HHHHH------------H----HHHHHHHHhhhhCCCCeEEEeccCCC---CCCCCCcee
Q 023870            4 GKMQSAVLALSEDKILP---VSAVL------------N----AIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSID   61 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~---~~~v~------------~----~m~~~A~~~~~~~~~~v~~~~~d~~~---lp~~~~sfD   61 (276)
                      +++|++||++..+...-   +.+++            +    .|+++++++     .+|.++++|+..   +.+..++||
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~vD  204 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPMVD  204 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCCCC
Confidence            68899999998887653   22222            2    244444433     457888888853   222346899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--hhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~~~~~~~l~~~l~laGF~~v~~~~~~~~  131 (276)
                      +|++..+.  ... ..++.+++++|||||+|+|........  .+....+++-...|..+||..++.....|.
T Consensus       205 vV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py  275 (293)
T PTZ00146        205 VIFADVAQ--PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF  275 (293)
T ss_pred             EEEEeCCC--cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence            99987642  222 567778999999999999943222111  122232333236789999998777655443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.25  E-value=9.1e-06  Score=70.16  Aligned_cols=92  Identities=15%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC---CCCCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP---VESFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp---~~~~sfD~V~s~~   67 (276)
                      .+..+|.|+.|.+.-+..+.              ..|++.|++++...+. ++.++++|+..++   +++++||.|++++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            45678888888865433222              6677777776655544 5899999997654   5667999999987


Q ss_pred             ccccCCh---------HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG---------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~---------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+|...         ..++++++|+|||||.|++.+..
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            6555321         57999999999999999988744

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.24  E-value=5.4e-06  Score=79.10  Aligned_cols=89  Identities=17%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +++|++||+|+.|.+..+..+             .+.|++.|++++.  +..+.+...+...+   +++||+|+++..++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e  239 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence            578999999998876543322             2778888887763  34577777887665   46899999998888


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+..   ..++++++|+|||||++++....
T Consensus       240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             hCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            8853   68999999999999999998754

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.21  E-value=1.4e-06  Score=78.94  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           42 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        42 ~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .|.|.++|+.+.+++.++||+|++.++++|+++   ..++++++++|+|||+|++..
T Consensus       186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             cCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            478999999998888899999999999999974   579999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.20  E-value=1.2e-06  Score=66.73  Aligned_cols=66  Identities=23%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 023870           26 NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI   91 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l   91 (276)
                      +.|++.++++...... ..........+..  ...++||+|+++.++||+++ ..+++.++++|||||+|
T Consensus        30 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   30 PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            4566666666655442 3333333333322  12369999999999999987 99999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.19  E-value=1.4e-05  Score=69.24  Aligned_cols=93  Identities=19%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             CCCCCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            3 TGKMQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .++ +.++|+++.|.+.++-            +..+..++.+++.+...++.|.+.+.|+++..++ ..||+|++..+++
T Consensus        28 ~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~  105 (192)
T PF03848_consen   28 LLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM  105 (192)
T ss_dssp             TS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred             hcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence            344 4589999999987632            1115555656666666778899999999988885 6899999988888


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++.   +.+++.+...++|||++++....
T Consensus       106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen  106 FLQRELRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence            8875   67899999999999999886553

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.11  E-value=3.5e-05  Score=65.84  Aligned_cols=111  Identities=12%  Similarity=0.077  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      +..+.+||.++.|.+.....+.              +.|++.+++++...+. ++.++.+++. .++ ..+||+|++...
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~  106 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS  106 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence            4678899999999875432221              6778888776655443 4788888774 344 358999998754


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      .+++  ..++.+++++|+|||+|++......   .    ...+...+..+||..++.
T Consensus       107 ~~~~--~~~l~~~~~~Lk~gG~lv~~~~~~~---~----~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287        107 GGNL--TAIIDWSLAHLHPGGRLVLTFILLE---N----LHSALAHLEKCGVSELDC  154 (187)
T ss_pred             ccCH--HHHHHHHHHhcCCCeEEEEEEecHh---h----HHHHHHHHHHCCCCcceE
Confidence            3322  5688999999999999998764321   1    125556788899976653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.10  E-value=2e-05  Score=68.80  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .++.+..||.++.|.+..+..+              .+.|++.|+++.    ..+.+.++++.+ |+++++||+|++..+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGV  114 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence            3567889999999998654333              267888887653    346677888888 899999999999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++|+++   ..++++++|++  ++++++.++..
T Consensus       115 L~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       115 LIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             hhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            988864   78999999998  57888887643

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.07  E-value=2.4e-05  Score=68.09  Aligned_cols=87  Identities=11%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.|++||.++.|.+.....               +.+.|.+.|++++...+.  ++.++.+|+........+||+|++.
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~  149 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT  149 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence            46789999999988754221               227788888877766554  3788999998755456799999998


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .+.++++     .++++.|+|||+|++..
T Consensus       150 ~~~~~~~-----~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        150 AAASTIP-----SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCcchhh-----HHHHHhcCcCcEEEEEE
Confidence            8776554     57889999999998765

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.07  E-value=3e-05  Score=60.66  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~   67 (276)
                      +..+.+||.++.|.+..+..+.              +.|.+.+++++...+. ++.++.+++.. ++....+||+|++..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            3467889999998875533222              6667777766554433 47777787764 344456899999876


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ..+..  .+++++++|.|||||+|++..
T Consensus        97 ~~~~~--~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        97 SGGLL--QEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             cchhH--HHHHHHHHHHcCCCCEEEEEe
Confidence            44322  589999999999999999764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.02  E-value=3.6e-05  Score=71.81  Aligned_cols=112  Identities=19%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             CCCCCCcEEEEccCCCCcH-H-----------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPV-S-----------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~-~-----------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .++.|..||+...|.+.-+ .           ++.+.|++.++.++...+.. +.+..+|+.++|+++++||+|++...+
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY  258 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence            3577888999988876431 1           22277888887776655543 678899999999988999999996432


Q ss_pred             c--------cCCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           70 H--------ELPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        70 ~--------~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      .        ....  ..++++++|+|||||++++..+...          .+...+..+|| .++.
T Consensus       259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~----------~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI----------DLESLAEDAFR-VVKR  313 (329)
T ss_pred             cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC----------CHHHHHhhcCc-chhe
Confidence            1        1112  6799999999999999998876531          23345888999 4443

This family is found exclusively in the Archaea.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.02  E-value=1.3e-05  Score=71.90  Aligned_cols=77  Identities=25%  Similarity=0.312  Sum_probs=61.1

Q ss_pred             EEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           44 ITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        44 ~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      .++.+|+.++|++++|.|+++...++....-..++.|++|+|||||.++|.+...... +.+    .+.+.+..-||-..
T Consensus       213 ~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~-dv~----~f~r~l~~lGF~~~  287 (325)
T KOG3045|consen  213 RVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFS-DVK----GFVRALTKLGFDVK  287 (325)
T ss_pred             ceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcc-cHH----HHHHHHHHcCCeee
Confidence            3567899999999999999998877665544889999999999999999999764311 222    46778999999865


Q ss_pred             hh
Q 023870          124 QR  125 (276)
Q Consensus       124 ~~  125 (276)
                      +.
T Consensus       288 ~~  289 (325)
T KOG3045|consen  288 HK  289 (325)
T ss_pred             eh
Confidence            44

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.01  E-value=3.8e-05  Score=67.33  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.|++||.++.|.+.....               +.+.|.+.|+++....+. ++.++.+|+.....+...||+|++..
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~  153 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA  153 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence            57899999999997754221               227788888887766554 48999999887666678999999877


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ..+++     ...+++.|||||+|++..
T Consensus       154 ~~~~~-----~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        154 AGPDI-----PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             Ccccc-----hHHHHHhhCCCcEEEEEE
Confidence            65544     356788999999998764

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.00  E-value=1e-05  Score=70.72  Aligned_cols=76  Identities=25%  Similarity=0.313  Sum_probs=52.4

Q ss_pred             EEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           45 TQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        45 ~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      +..+|+.++|++++++|+++...++....-..++.|.+|+|||||.|.|.+...... ..    +.....+..-||....
T Consensus       108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~-~~----~~F~~~~~~~GF~~~~  182 (219)
T PF05148_consen  108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFE-NV----KQFIKALKKLGFKLKS  182 (219)
T ss_dssp             EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S--H----HHHHHHHHCTTEEEEE
T ss_pred             EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCc-CH----HHHHHHHHHCCCeEEe
Confidence            466999999999999999998887766544899999999999999999999864311 12    2555668888998655


Q ss_pred             h
Q 023870          125 R  125 (276)
Q Consensus       125 ~  125 (276)
                      .
T Consensus       183 ~  183 (219)
T PF05148_consen  183 K  183 (219)
T ss_dssp             E
T ss_pred             c
Confidence            3

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.99  E-value=3e-05  Score=70.86  Aligned_cols=93  Identities=12%  Similarity=0.137  Sum_probs=73.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||.|+.|-+.-+.-             +.+.+.+.+++++...+..  +++...|..++.   +.||.|+|+-
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg  145 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG  145 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence            479999999999988654221             2277888888888777765  677666666653   4499999999


Q ss_pred             ccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++|+..   +.+++.++++|+|||++++.....
T Consensus       146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            9988864   899999999999999998887653

>PRK06202 hypothetical protein; Provisional

Probab=97.97  E-value=3.5e-05  Score=68.04  Aligned_cols=90  Identities=12%  Similarity=0.024  Sum_probs=67.3

Q ss_pred             CCCCcEEEEccCCCCcHHH------------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSA------------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~------------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      +.+.+||+++.|.+.-...                  +.+.|++.|+++....  ++.+...+...+++++++||+|+++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GVTFRQAVSDELVAEGERFDVVTSN  136 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CCeEEEEecccccccCCCccEEEEC
Confidence            4567899999988743211                  1378888887764332  3566667777788888899999999


Q ss_pred             cccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 SSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .++||+++   ..++++++|+++  |.+++.+...
T Consensus       137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             CeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            99999987   469999999998  6677776653

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.95  E-value=4.1e-05  Score=67.04  Aligned_cols=94  Identities=16%  Similarity=0.040  Sum_probs=63.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhh-------hCCCCeEEEeccCCCCC--------CCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVE-------QCDPQIITQASSLSQLP--------VESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~-------~~~~~v~~~~~d~~~lp--------~~~~sfD~V~s~~   67 (276)
                      .++.|+.||+++.|.+.-...+.+.+-.  ...+-       ..-.++.++++|+.+.+        +...+||+|++..
T Consensus        48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~  125 (209)
T PRK11188         48 LFKPGMTVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM  125 (209)
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence            3688999999999986422112111100  00000       01124788999998853        6788999999987


Q ss_pred             ccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG------------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~------------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.++..+            ..+|++++++|||||.|++..+..
T Consensus       126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            6665432            358999999999999999988764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.95  E-value=1.4e-05  Score=71.84  Aligned_cols=89  Identities=15%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhC---CC----CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            7 QSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQC---DP----QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~---~~----~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      |+++|+|+.|.++-++            ++++.|++.|+++....   +.    ++++...+++.+.   ..||+|+++.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence            5778888888765422            55699999998874321   22    2445556666653   3499999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++|+.+ ++++..+.+.|||||.+++++...
T Consensus       167 vleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            9999987 999999999999999999998653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.92  E-value=5.9e-05  Score=69.41  Aligned_cols=85  Identities=22%  Similarity=0.356  Sum_probs=63.4

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-CC----c---hh---HHH----
Q 023870           43 IITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-SD----K---GD---VDK----  106 (276)
Q Consensus        43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~-~~----~---~~---~~~----  106 (276)
                      +.++-..++++|. .+.||+|++..+++|..+ -..|.++...|+|||.+++.+..- +.    +   ..   .+.    
T Consensus       167 ~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi  245 (315)
T PF08003_consen  167 VFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI  245 (315)
T ss_pred             EEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence            3333356888887 789999999999988876 889999999999999999877531 10    0   00   011    


Q ss_pred             -HHHHHHHHHHHCCCcchhhhhc
Q 023870          107 -AISALEGKLLLAGFLDAQRIQL  128 (276)
Q Consensus       107 -~~~~l~~~l~laGF~~v~~~~~  128 (276)
                       +...|...|..+||.+++....
T Consensus       246 Ps~~~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  246 PSVAALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             CCHHHHHHHHHHcCCceEEEecC
Confidence             1357888999999999887653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14968 putative methyltransferase; Provisional

Probab=97.92  E-value=0.00016  Score=60.99  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCC---eEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQ---IITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~---v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..|.++|.++.|.+.-+..+            .+.|.+.+++++...+..   +.++.+|+.+ ++...+||+|+++..+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY  100 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence            56778999988887543322            267777777766544433   7788888765 4556689999986543


Q ss_pred             ccC---------------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           70 HEL---------------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        70 ~~~---------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ...                     .. ..+++++.++|||||.+++......   ..    ..+...+..+||....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~----~~l~~~~~~~g~~~~~  170 (188)
T PRK14968        101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GE----DEVLEYLEKLGFEAEV  170 (188)
T ss_pred             CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CH----HHHHHHHHHCCCeeee
Confidence            220                     01 4579999999999999988765421   11    1455677888997543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.90  E-value=0.00015  Score=62.61  Aligned_cols=110  Identities=13%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCC--CCeEEEeccCCCC-CCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCD--PQIITQASSLSQL-PVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~l-p~~~~sfD~V~s   65 (276)
                      +.+|..||+++.|.+.-+.               ++.+.|++.+++++...+  .++.++.+++.+. +.....||.|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            5678899999888863211               112778888887766555  3578888888653 333468999998


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ...   ... ..++.++.++|||||++++....   ...    .+.+...|...|| +.+
T Consensus       118 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~---~~~----~~~~~~~l~~~g~-~~~  166 (198)
T PRK00377        118 GGG---SEKLKEIISASWEIIKKGGRIVIDAIL---LET----VNNALSALENIGF-NLE  166 (198)
T ss_pred             CCC---cccHHHHHHHHHHHcCCCcEEEEEeec---HHH----HHHHHHHHHHcCC-CeE
Confidence            542   223 67899999999999999874432   111    2355566788999 443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.88  E-value=0.00021  Score=63.17  Aligned_cols=110  Identities=19%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +.+||.++.|.+.....+.              +.|++.+++++...+.. +.++.+++.. +++.++||+|+++..++.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence            4578999888875432222              67777777776655544 8889999876 567789999998643321


Q ss_pred             ------CCh---------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           72 ------LPG---------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        72 ------~~~---------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                            +..                     ..++.++.++|+|||.+++.....     .   .+.+...+..+||..+.
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-----~---~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-----Q---GEAVRALFEAAGFADVE  238 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-----H---HHHHHHHHHhCCCCceE
Confidence                  110                     257889999999999999865321     1   12556678889998765


Q ss_pred             h
Q 023870          125 R  125 (276)
Q Consensus       125 ~  125 (276)
                      .
T Consensus       239 ~  239 (251)
T TIGR03534       239 T  239 (251)
T ss_pred             E
Confidence            4

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.88  E-value=0.00012  Score=64.33  Aligned_cols=93  Identities=14%  Similarity=0.055  Sum_probs=66.7

Q ss_pred             CCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhh-------------hCCCCeEEEeccCCCCCCC-CC
Q 023870            5 KMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVE-------------QCDPQIITQASSLSQLPVE-SF   58 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~-------------~~~~~v~~~~~d~~~lp~~-~~   58 (276)
                      +.|.+||+++.|.+..+.-            +++.+++.+.+...             ..+..|.+.++|+.+++.. ..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            5678999999999866432            22555665422110             0234588999999888743 45


Q ss_pred             ceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           59 SIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        59 sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .||.|+-...+|+++.   ...++.+.++|||||++++....
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            7999999888888875   66999999999999987666543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.86  E-value=1.2e-05  Score=70.58  Aligned_cols=68  Identities=18%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           26 NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.|++.|+.+.    ++++|..+|+.++. ++..+|+++++.++||+++ ..+|..+...|.|||.|.++.+..
T Consensus        64 ~~Mla~Aa~rl----p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          64 PAMLAKAAQRL----PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             HHHHHHHHHhC----CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            88999887763    67899999999885 5778999999999999999 999999999999999999998763

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.83  E-value=0.00012  Score=64.15  Aligned_cols=87  Identities=13%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.|.+||.++.|.+..+..+               .+.|.+.|++++...+. ++.++.+|+.........||+|++..
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  154 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA  154 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence            578899999999977542211               26778888887766654 48899999876554557899999876


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ...++     ...+++.|||||+|++..
T Consensus       155 ~~~~~-----~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       155 AGPKI-----PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             Ccccc-----cHHHHHhcCcCcEEEEEE
Confidence            55443     456889999999998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.83  E-value=0.00015  Score=65.05  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             CCCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +..|.+||+++.|.+.-+.             ++.+.|++.|+++....+.....      .++..+.+||+|+++...+
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~~  190 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILAN  190 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcHH
Confidence            4678999999998864321             11177888887776555442111      1122222799999875322


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      .+  ..++.+++++|||||+|+++.....       ....+...+...||..+...
T Consensus       191 ~~--~~l~~~~~~~LkpgG~lilsgi~~~-------~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        191 PL--LELAPDLARLLKPGGRLILSGILEE-------QADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             HH--HHHHHHHHHhcCCCcEEEEEECcHh-------hHHHHHHHHHHCCCEEEEEE
Confidence            11  5788999999999999999875521       12256667888999865543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.81  E-value=0.00012  Score=63.97  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=67.7

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||+++.|.+.-...+            .+.|++.|+++....+.  ++.+.++++.+++   ++||+|++...++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~  130 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI  130 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence            45889999999887543322            27889988887765543  5889999998876   7899999988887


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEE
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      +++.   ..+++++++++++++.+.+.
T Consensus       131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       131 HYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            7764   67899999999987776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.77  E-value=0.00013  Score=63.36  Aligned_cols=72  Identities=13%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 023870           24 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        24 v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.+..+++|++|.... .+|.|+++++... .|.+.||+|+.+-+++++.+    ..++..+...|+|||.|++..+.
T Consensus        73 is~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen   73 ISPRALARARERLAGL-PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             S-HHHHHHHHHHTTT--SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             CCHHHHHHHHHhcCCC-CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            4467788888887643 5699999999764 57899999999999999864    56889999999999999999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.77  E-value=0.00022  Score=62.30  Aligned_cols=85  Identities=11%  Similarity=0.043  Sum_probs=62.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||.|+.|.+.-...+.            +.|++.|+++....+.  ++.+..+++   +..+++||+|++..++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~  138 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhh
Confidence            567899999999875443332            7888888887665544  588888874   44468899999999988


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEE
Q 023870           71 ELPG---DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~   92 (276)
                      |+++   ..+++++.+.+++++.+.
T Consensus       139 ~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        139 HYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             cCCHHHHHHHHHHHHhhcCCeEEEE
Confidence            7764   568888888776554443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.77  E-value=6.7e-05  Score=66.77  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCc-EEEEEecC
Q 023870           25 LNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL   97 (276)
Q Consensus        25 ~~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG-~l~i~~~~   97 (276)
                      .+.|+++|++.-..  .+........++..|--.++|.|+|++...+||+..++++++++|+||+.| .+.++...
T Consensus        64 s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   64 SEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             CHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            38899988765221  122222222233333334999999999999999998999999999998866 77777655

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.75  E-value=0.00019  Score=63.28  Aligned_cols=107  Identities=18%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             CCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccC-CCCCCCCCceeEEEeccccccCC
Q 023870            7 QSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~-~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      ..-+|+|+.|.++...            ++.+.|++.|.++--+ +   .++.+|+ +-+||..++||.|+++.+++|+=
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e-g---dlil~DMG~GlpfrpGtFDg~ISISAvQWLc  126 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE-G---DLILCDMGEGLPFRPGTFDGVISISAVQWLC  126 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh-c---CeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence            3456777777765533            4559999998764211 1   3455666 68899999999999998887741


Q ss_pred             -------h-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           74 -------G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        74 -------~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                             +     ..++..++.+|++|++.+++-...+     ....+-+.+..+.+||--
T Consensus       127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen-----~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN-----EAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc-----hHHHHHHHHHHHhhccCC
Confidence                   1     3468889999999999998875432     222335667788999973

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.74  E-value=0.00018  Score=68.60  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCC--CCCCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP-QIITQASSLSQL--PVESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l--p~~~~sfD~V~s~~~   68 (276)
                      .+..+|.|+.|.+.-+..+              ...|++.+.+++...+. ++.++++|+..+  .+++++||.|++++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            3567899988886442222              25677777776666554 488999998754  578999999999876


Q ss_pred             cccCCh-------HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG-------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~-------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..|...       ..++.+++|+|||||.+.+.+-.
T Consensus       202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            655322       57999999999999999998744

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.70  E-value=0.00012  Score=57.10  Aligned_cols=90  Identities=18%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870            7 QSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLP--VESFSIDTVLSISSS   69 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp--~~~~sfD~V~s~~~l   69 (276)
                      |.+||.+..|.+.-+..+.             +...+.++.+....+.  ++.++++|+..+.  +++++||+|+++-.+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            5677888777764322222             5566777777665543  5899999998775  889999999997655


Q ss_pred             ccCC--------h-HHHHHHHHHhccCCcEEEEEec
Q 023870           70 HELP--------G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~--------~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ....        . ..+++++.++|||||.+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4321        2 6789999999999999998764

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.67  E-value=0.00021  Score=65.52  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .+.|.+||+++.|.+.-+..+             .+.|++.|+++....+..  +.+..++.  .++..++||+|+++..
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL  234 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence            467899999999987532222             167788887776654433  44444442  3345679999999754


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+.+  ..++.+++++|||||+|+++...
T Consensus       235 ~~~l--~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       235 AEVI--KELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HHHH--HHHHHHHHHHcCCCcEEEEEeCc
Confidence            3322  57899999999999999998765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.64  E-value=0.00047  Score=60.86  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHH-h-hh-----------hCCCCeEEEeccCCCCCCC-CC
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDE-A-VE-----------QCDPQIITQASSLSQLPVE-SF   58 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~-~-~~-----------~~~~~v~~~~~d~~~lp~~-~~   58 (276)
                      ..+.+||+++.|.+..+.-+            .+..++.+.+ + ..           .....|.+.++|+.+++.. ..
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            56789999999997653322            2444443321 1 10           0134588899999888543 35


Q ss_pred             ceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 023870           59 SIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        59 sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      .||.|+-...+++++.   ..+++.++++|||||++++.
T Consensus       116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            8999999888888875   78999999999999975553

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.64  E-value=0.00027  Score=66.58  Aligned_cols=89  Identities=16%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      ..+||+++.|.+.-+..+.              +.|++.|++.....+....++.+|+...  ..+.||+|+++..+|+.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence            3479999988875432222              5788888877766666666676776542  36789999999888863


Q ss_pred             C-----h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           73 P-----G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        73 ~-----~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .     . ..+++++.+.|||||.|++....
T Consensus       275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            2     2 78999999999999999887654

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.62  E-value=0.00028  Score=62.62  Aligned_cols=85  Identities=18%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +....|++|+.|.+.-+..+.             +.+++.+++     ..+|+++.+|+. -++|.  +|+|+....+|.
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~  170 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD  170 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhhh
Confidence            344578999999875444343             555555544     367999999997 57776  999999999999


Q ss_pred             CCh---HHHHHHHHHhccCC--cEEEEEecC
Q 023870           72 LPG---DQLLEEISRVLKPG--GTILIYKKL   97 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPg--G~l~i~~~~   97 (276)
                      |++   ..+|+.+++.|+||  |+|+|.+..
T Consensus       171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             S-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            987   77999999999999  999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.60  E-value=0.00066  Score=57.28  Aligned_cols=91  Identities=20%  Similarity=0.213  Sum_probs=64.6

Q ss_pred             CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .+.+||.++.|.+.-+-.+              .+.+++.+++.+...+.. +.++.+|+.. +++..+||+|+++-.+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence            4678899988886321111              167778888877776666 8888888754 34478999999988766


Q ss_pred             cCCh------HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .-..      ..++.+..+.|||||.|++....
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            5432      77899999999999999776543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.59  E-value=0.00053  Score=59.67  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+++||.++.|.+.....+.            +.|++.++++....+. ++.+..+++.....+.+.||+|++....+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP  155 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence            4678999999999875432221            5677778777665554 38888888765322357899999977655


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEec
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++     ..++++.|+|||++++...
T Consensus       156 ~~-----~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        156 EI-----PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             hh-----hHHHHHhcCCCcEEEEEEc
Confidence            44     4568899999999998765

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.56  E-value=0.00026  Score=61.17  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=70.2

Q ss_pred             CCCCCCCcEEEEccCCCCcHHHHHHHHH------HHHHHhhhh-CCCCeEEEeccCC-CC-CCCCCceeEEEeccccccC
Q 023870            2 DTGKMQSAVLALSEDKILPVSAVLNAIR------DLGDEAVEQ-CDPQIITQASSLS-QL-PVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~~~~~v~~~m~------~~A~~~~~~-~~~~v~~~~~d~~-~l-p~~~~sfD~V~s~~~l~~~   72 (276)
                      +-+++|.+||+++.|.+.-+..+.+...      ++..+++.+ -...+.++++|++ .| .|++.+||+|+.+.+++++
T Consensus         9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~   88 (193)
T PF07021_consen    9 EWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV   88 (193)
T ss_pred             HHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence            3578999999999998654433332110      000111110 0122567889986 45 4999999999999999998


Q ss_pred             Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      .. ..+|.|+.|+   |...+++-+.-+       .| ..+..+.+.|=+.+.
T Consensus        89 ~~P~~vL~EmlRV---gr~~IVsFPNFg-------~W-~~R~~l~~~GrmPvt  130 (193)
T PF07021_consen   89 RRPDEVLEEMLRV---GRRAIVSFPNFG-------HW-RNRLQLLLRGRMPVT  130 (193)
T ss_pred             hHHHHHHHHHHHh---cCeEEEEecChH-------HH-HHHHHHHhcCCCCCC
Confidence            87 8899999888   445565554321       12 223356666766544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00811 spermidine synthase; Provisional

Probab=97.50  E-value=0.00086  Score=61.44  Aligned_cols=93  Identities=16%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh------CCCCeEEEeccCCC-CCCCCCceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ------CDPQIITQASSLSQ-LPVESFSIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~------~~~~v~~~~~d~~~-lp~~~~sfD~V   63 (276)
                      +...+||+++.|.+.-++.+.              +.|++.|++....      .+.++.++.+|+.. +....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            456789999988765444333              7788888776542      24568888898764 33356799999


Q ss_pred             EeccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        64 ~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++-..-.+.+     ..++++.+++.|+|||.+++....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9865433322     267899999999999999986443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.48  E-value=0.0014  Score=60.97  Aligned_cols=83  Identities=16%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhC------CCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~------~~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .|.+||+++.|.+.....+            .+.|++.|+++....      ...+.|..+|++.+   +++||+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence            4789999999987543222            378999988876543      23477888887664   57899999999


Q ss_pred             ccccCCh---HHHHHHHHHhccCCcEEE
Q 023870           68 SSHELPG---DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        68 ~l~~~~~---~~~l~ei~rvLKPgG~l~   92 (276)
                      +++|+++   ..+++.+.+ +.+||.++
T Consensus       221 vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        221 VLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            8888875   345565554 45555544

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.46  E-value=0.0021  Score=57.74  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=72.5

Q ss_pred             CCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhh-hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~-~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..+.+||.++.|.+.....+              .+.|++.|+++.. ....++.++.+|+.. +++.++||+|+++..+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence            45678999988876442222              2567777777665 233458888888854 3446799999985322


Q ss_pred             cc------C--------------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           70 HE------L--------------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        70 ~~------~--------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ..      +                    .. ..++.++.++|||||++++....     ...   +.+...+..+||..
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-----~~~---~~~~~~l~~~gf~~  257 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-----DQG---EAVRALLAAAGFAD  257 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-----hHH---HHHHHHHHhCCCce
Confidence            10      0                    01 45778888999999999985422     111   24556677899986


Q ss_pred             hhh
Q 023870          123 AQR  125 (276)
Q Consensus       123 v~~  125 (276)
                      ++.
T Consensus       258 v~~  260 (275)
T PRK09328        258 VET  260 (275)
T ss_pred             eEE
Confidence            554

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.46  E-value=0.0018  Score=58.28  Aligned_cols=135  Identities=11%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             CCCCCCcEEEEccCCCCc-H-------------HHHHHHHHHHHHHhhhhCC--CCeEEEeccCCCCC--CCCCceeEEE
Q 023870            3 TGKMQSAVLALSEDKILP-V-------------SAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLP--VESFSIDTVL   64 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~-~-------------~~v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp--~~~~sfD~V~   64 (276)
                      .++...++|+++.|.+.- +             -.+.+.|.++|++.+...+  .++.++++|+.++.  +..++||+|+
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii  120 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII  120 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence            345578889998877632 1             0123888899988876644  45899999998774  4556899999


Q ss_pred             ecccc----------------cc-CC-h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           65 SISSS----------------HE-LP-G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        65 s~~~l----------------~~-~~-~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      |+-.+                +| .. + +++++-..++|||||+|++.-...    .+    ..+...+...+|.....
T Consensus       121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e----rl----~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE----RL----AEIIELLKSYNLEPKRI  192 (248)
T ss_pred             eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----HH----HHHHHHHHhcCCCceEE
Confidence            96321                11 22 2 789999999999999999886431    12    24455667667765443


Q ss_pred             hhcccccCCceeEEEEeecc
Q 023870          126 IQLKSVVPAEVVSFGVKGKK  145 (276)
Q Consensus       126 ~~~~~~~~~~~~~~~i~akK  145 (276)
                      ..+.|........+.+.+.|
T Consensus       193 ~~V~p~~~k~A~~vLv~~~k  212 (248)
T COG4123         193 QFVYPKIGKAANRVLVEAIK  212 (248)
T ss_pred             EEecCCCCCcceEEEEEEec
Confidence            33222211223455566665

>PRK01581 speE spermidine synthase; Validated

Probab=97.46  E-value=0.0011  Score=62.70  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=76.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHh--h------hhCCCCeEEEeccCCC-CCCCCCcee
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEA--V------EQCDPQIITQASSLSQ-LPVESFSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~--~------~~~~~~v~~~~~d~~~-lp~~~~sfD   61 (276)
                      ..-.+||+++.|.+..++.+.              +.|++.|++.  .      ...+.++.++.+|+.. +.-..+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            345689999988764444333              7788888751  1      1134678888888865 444567899


Q ss_pred             EEEeccccc------cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           62 TVLSISSSH------ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        62 ~V~s~~~l~------~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      +|++-..-.      .+...++++.+++.|+|||.|+++...+.   ........+...+..+||...
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~---~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA---DAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh---hhHHHHHHHHHHHHHhCCceE
Confidence            999864211      12237899999999999999988754431   112222346677888888654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.44  E-value=0.00039  Score=59.71  Aligned_cols=79  Identities=16%  Similarity=0.050  Sum_probs=57.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCC-C-CCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~-l-p~~~~sfD~V~s~~   67 (276)
                      .++.+.+||.++.|.+.-...+.             +.|++.+++      ..+.++++++.+ + ++++++||+|+++.
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence            46778899999988874432221             344444432      135677788865 5 47888999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccC
Q 023870           68 SSHELPG-DQLLEEISRVLKP   87 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKP   87 (276)
                      ++||+++ ..++++++|++++
T Consensus        84 ~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        84 TLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             HhHcCcCHHHHHHHHHHhCCe
Confidence            9999988 8899999998765

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.43  E-value=0.00025  Score=67.24  Aligned_cols=96  Identities=21%  Similarity=0.249  Sum_probs=69.0

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ..++|+.++.+.-+...+.+-+-             +.-..++......  ......++.+++-+.|+++++||.+.++-
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            45677888888888776643222             1111111111111  11223458889999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.+|.++ ..+++|++|++||||+++..+|..
T Consensus       187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             ecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            9999998 999999999999999999998753

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.42  E-value=0.00081  Score=57.47  Aligned_cols=91  Identities=16%  Similarity=0.002  Sum_probs=57.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHH--hhh-----h--CCCCeEEEeccCCCCC--------CCCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDE--AVE-----Q--CDPQIITQASSLSQLP--------VESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~--~~~-----~--~~~~v~~~~~d~~~lp--------~~~~sfD~V~s   65 (276)
                      .++.|++||.++.|.+.-..    .+.+....  ++-     .  ....+.++++++.+.+        ++.++||+|++
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~----~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQ----VAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHH----HHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            46789999999999874222    22221111  000     0  1124667778876643        46778999998


Q ss_pred             ccccc----cCC-------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSH----ELP-------G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~----~~~-------~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+.+    |..       . +.++.+++++|+|||++++..+.
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            54321    111       1 57899999999999999997654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.41  E-value=0.00049  Score=60.41  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEccCCCCcHH---HHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVS---AVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      +++|++||.|+.|.+-...   .++            +.+.+.|+++....+. ++.++.+|....--....||.|+...
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~  149 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA  149 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence            7899999999999864422   221            6677788888776665 58899999865433456899999987


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +...++     ..+.+.||+||++++-..
T Consensus       150 a~~~ip-----~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  150 AVPEIP-----EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             BBSS-------HHHHHTEEEEEEEEEEES
T ss_pred             ccchHH-----HHHHHhcCCCcEEEEEEc
Confidence            765544     457888999999997653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.40  E-value=0.0026  Score=61.59  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~   67 (276)
                      .+.|++||++..|.+.-...+              .+.|++.+++++...+..+.++.+|+..++  ++.++||.|++..
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            467899999988876432212              266778888877777777788999998764  3467899999532


Q ss_pred             c------------cccCCh-----------HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 S------------SHELPG-----------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~------------l~~~~~-----------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .            +.|...           ..++.+++++|||||+|++++-+
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            1            112111           36899999999999999988864

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.39  E-value=0.0016  Score=47.60  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=44.7

Q ss_pred             CCeEEEeccCCCCCC-CCCceeEEEecccccc-CCh-HHHHHHHHHhccCCcEEEEE
Q 023870           41 PQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LPG-DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        41 ~~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~-~~~-~~~l~ei~rvLKPgG~l~i~   94 (276)
                      ..+.+...++.+... ....||+|++...+++ ... ..+++.+.+.|+|||.+++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          47 DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            457888888887654 5678999999988877 444 88999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03438 probable methyltransferase

Probab=97.38  E-value=0.0011  Score=61.11  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCC--CCeEEEeccCCC-CCCCCCc----ee
Q 023870            4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCD--PQIITQASSLSQ-LPVESFS----ID   61 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~-lp~~~~s----fD   61 (276)
                      ++.+..||.++.|.+.-...               +.+.|++.++++.....  .++.++++|+.+ ++++...    ..
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence            45677889998888753222               33678888877765533  457788999876 4554433    23


Q ss_pred             EEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++.+++++++.   ..+|++++++|+|||.|++....
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            3444456777764   67899999999999999886544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.37  E-value=0.0014  Score=62.51  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC----CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP----QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~----~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      +.+||+++.|.+.-...+.              +.|++.|++++...+.    ++.+..+|+.. .++..+||+|+++-.
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence            4589999888864322221              5788888776654332    46777777743 234568999999877


Q ss_pred             cccCC---h---HHHHHHHHHhccCCcEEEEEec
Q 023870           69 SHELP---G---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        69 l~~~~---~---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +|...   +   .+++.+++++|||||.|++...
T Consensus       308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            76542   2   6789999999999999998864

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.35  E-value=0.0027  Score=61.54  Aligned_cols=94  Identities=19%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCC----CCCCceeEE
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLP----VESFSIDTV   63 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp----~~~~sfD~V   63 (276)
                      .+.|++||++..+.+.-..               ++.+.|++.+++++...+. ++.++.+|+..++    +..++||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            4678999999887753211               2237777778777776665 4888899998776    456799999


Q ss_pred             Eecc------ccccCC-----------------hHHHHHHHHHhccCCcEEEEEecC
Q 023870           64 LSIS------SSHELP-----------------GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        64 ~s~~------~l~~~~-----------------~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++-.      +++..+                 ..++|.+++++|||||+|+.++-.
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            9621      222211                 146799999999999999988754

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.34  E-value=0.00022  Score=69.40  Aligned_cols=72  Identities=25%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             CCCCCCCCCceeEEEecccc-ccCCh-HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCc
Q 023870           50 LSQLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        50 ~~~lp~~~~sfD~V~s~~~l-~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      -..|||++++||+|.|.-.+ .|... .-+|-|+.|+|+|||+|+++.+...  +..+....|..++...+.--+.
T Consensus       172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~  247 (506)
T PF03141_consen  172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK  247 (506)
T ss_pred             cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999986544 45444 6789999999999999998876533  2234555666665544444443

; GO: 0008168 methyltransferase activity

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0022  Score=57.61  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=79.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      .+.+|.+|+-.+-|.+.-...+.               +...+.|+++....+.  .+.+..+|+.+.-+++ .||+|+.
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L  169 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL  169 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE
Confidence            47889999999888763322111               5566778887766443  3778889998876655 9999987


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        66 ~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                      =..-    +-.++..++++|||||.+.+..+.-   ....+    +...|...||++++.++
T Consensus       170 Dmp~----PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~k----t~~~l~~~g~~~ie~~E  220 (256)
T COG2519         170 DLPD----PWNVLEHVSDALKPGGVVVVYSPTV---EQVEK----TVEALRERGFVDIEAVE  220 (256)
T ss_pred             cCCC----hHHHHHHHHHHhCCCcEEEEEcCCH---HHHHH----HHHHHHhcCccchhhhe
Confidence            5421    2578999999999999999998762   22333    33445666999988765

>PRK03612 spermidine synthase; Provisional

Probab=97.30  E-value=0.0013  Score=65.29  Aligned_cols=113  Identities=20%  Similarity=0.254  Sum_probs=76.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHh--hhh------CCCCeEEEeccCCC-CCCCCCcee
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEA--VEQ------CDPQIITQASSLSQ-LPVESFSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~--~~~------~~~~v~~~~~d~~~-lp~~~~sfD   61 (276)
                      +...+||+++.|.+.-.+.+.              +.|++.+++.  ...      .+++++++.+|+.. +....++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            556789999888765433322              7788888772  211      23568888898865 333457999


Q ss_pred             EEEeccccccCC------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870           62 TVLSISSSHELP------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (276)
Q Consensus        62 ~V~s~~~l~~~~------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF  120 (276)
                      +|++.....+.+      .+++++.+++.|||||.++++...+..  . .+....+.+.+...||
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~--~-~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF--A-PKAFWSIEATLEAAGL  437 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc--c-hHHHHHHHHHHHHcCC
Confidence            999975433322      257999999999999999987644321  1 2223466777888999

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.29  E-value=0.0034  Score=60.73  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEccCCCCcH---H-----------HHHHHHHHHHHHhhhhCCCCeE--EEeccCCCCCC--CCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPV---S-----------AVLNAIRDLGDEAVEQCDPQII--TQASSLSQLPV--ESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~---~-----------~v~~~m~~~A~~~~~~~~~~v~--~~~~d~~~lp~--~~~sfD~V~s   65 (276)
                      .+.|..||++..+.+.-.   .           ++.+.|++.+++++...+..+.  +..++....++  +.++||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            457889999988776221   1           1226777778777777666543  36666655544  5678999995


Q ss_pred             c------cccccCCh-----------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 I------SSSHELPG-----------------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~------~~l~~~~~-----------------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      -      ..++..++                 .++|.+++++|||||+|++++.+-
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2      12222221                 469999999999999999998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.28  E-value=0.0037  Score=60.27  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=75.7

Q ss_pred             CCCCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCC-CCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~-~~sfD~V~s~~~   68 (276)
                      ++.+.+||+++.|.+.-+.              ++.+.|++.|++++...+.++.++++|+.+..++ ..+||+|+++-.
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP  328 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP  328 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence            4566789999888763321              1227899999888777667789999998654433 458999999653


Q ss_pred             ccc------------------C---Ch-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           69 SHE------------------L---PG-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        69 l~~------------------~---~~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ...                  +   .+     ..+++++.+.|+|||.+++.....     ..   +.+...+...||..
T Consensus       329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-----Q~---e~V~~ll~~~Gf~~  400 (423)
T PRK14966        329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-----QG---AAVRGVLAENGFSG  400 (423)
T ss_pred             CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-----HH---HHHHHHHHHCCCcE
Confidence            210                  0   01     356667778999999988654321     11   15556677789976


Q ss_pred             hhh
Q 023870          123 AQR  125 (276)
Q Consensus       123 v~~  125 (276)
                      ++.
T Consensus       401 v~v  403 (423)
T PRK14966        401 VET  403 (423)
T ss_pred             EEE
Confidence            544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0023  Score=56.09  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      -+++|++||-|+.|.+=.+..|.            +.+.+.|+++....+. +|.+.++|...-=-+...||.|+...+.
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa  148 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA  148 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence            36899999999999875533333            5556678887777776 5899999986532234789999988776


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ..+|     ..+.+-|||||++++-..
T Consensus       149 ~~vP-----~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         149 PEVP-----EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCC-----HHHHHhcccCCEEEEEEc
Confidence            6665     457788999999998775

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.25  E-value=0.0019  Score=55.50  Aligned_cols=91  Identities=14%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~   67 (276)
                      ++.|..||.++.|.+.-...+              .+.|++.+++++...+. +++++.+++.. ++.-...+|.|+...
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            457889999999887532211              17788888877655443 48888888754 332223467665432


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .   ..-..++++++++|+|||+|++....
T Consensus       118 ~---~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        118 G---RPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             C---cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            1   11268999999999999999998764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.24  E-value=0.0028  Score=58.52  Aligned_cols=116  Identities=19%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-CceeEEEeccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISS   68 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-~sfD~V~s~~~   68 (276)
                      .++.|.+||+++.|.+.-+..+.             +..++.|++++...+..-.....-...+..+. ..||+|+++-.
T Consensus       159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL  238 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL  238 (300)
T ss_pred             hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence            45689999999999875433222             55566677766655544111111122233444 59999999752


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                      .+-  -..+..++++.|||||+++++--.       ....+.+...+..+||..+....
T Consensus       239 A~v--l~~La~~~~~~lkpgg~lIlSGIl-------~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         239 AEV--LVELAPDIKRLLKPGGRLILSGIL-------EDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             HHH--HHHHHHHHHHHcCCCceEEEEeeh-------HhHHHHHHHHHHhCCCeEeEEEe
Confidence            211  157889999999999999988533       12223566678889998766543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.23  E-value=0.0016  Score=58.17  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=56.1

Q ss_pred             CCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHH----------------------
Q 023870           52 QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK----------------------  106 (276)
Q Consensus        52 ~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~----------------------  106 (276)
                      .-|...+++|+|++++++..++.   +.++..++++|||||.+++.+.+...+..++-                      
T Consensus       137 ~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF  216 (264)
T KOG2361|consen  137 KEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFF  216 (264)
T ss_pred             cCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeec
Confidence            44678999999999999888875   88999999999999999999886431100000                      


Q ss_pred             HHHHHHHHHHHCCCcchhh
Q 023870          107 AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus       107 ~~~~l~~~l~laGF~~v~~  125 (276)
                      ..+.|...+..+||..++.
T Consensus       217 ~~eeL~~~f~~agf~~~~~  235 (264)
T KOG2361|consen  217 TEEELDELFTKAGFEEVQL  235 (264)
T ss_pred             cHHHHHHHHHhcccchhcc
Confidence            1246667789999987764

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.22  E-value=0.0056  Score=56.13  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             CCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .+.+||+++.|.+.-+.              ++.+.|++.|++++...+.  ++.++.+|+.. +++..+||+|+++-..
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            35689999888864321              1227788888887766554  48899999853 3456689999986221


Q ss_pred             -------------ccCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           70 -------------HELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        70 -------------~~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                                   ++.+            . ..+++++.+.|+|||++++.....     .    ..+...+..+||.-
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-----~----~~v~~~~~~~~~~~  269 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-----M----EALEEAYPDVPFTW  269 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-----H----HHHHHHHHhCCCce
Confidence                         1111            1 467888999999999999766431     1    14455566677764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.20  E-value=0.002  Score=60.24  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.|++||.++.|.+.-+.               +..+.|++.|++++...+. ++.++.+|+...+.....||+|++..
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~  157 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV  157 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence            5688999999998753211               1226788888877665554 47888999877665567899999876


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ..+.+     ...+.+.|+|||++++..
T Consensus       158 g~~~i-----p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        158 GVDEV-----PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             chHHh-----HHHHHHhcCCCCEEEEEe
Confidence            54433     345789999999998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.17  E-value=0.0056  Score=55.97  Aligned_cols=109  Identities=20%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             CcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc---
Q 023870            8 SAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS---   68 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~---   68 (276)
                      .+||+++.|.+..+..+              .+.+++.|++++...+.  ++.++++|+.. +++...||+|+++-.   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            57999988886432212              26678888887765554  38899998865 455558999999621   


Q ss_pred             ----------cccCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHH-HCCCcchh
Q 023870           69 ----------SHELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQ  124 (276)
Q Consensus        69 ----------l~~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~-laGF~~v~  124 (276)
                                .+|.+            . ..++.++.+.|+|||.|++.....     ...   .+...+. ..||..++
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----q~~---~~~~~~~~~~~~~~~~  266 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----QQK---SLKELLRIKFTWYDVE  266 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----HHH---HHHHHHHhcCCCceeE
Confidence                      11111            1 467888999999999998766431     111   3333444 36887654


Q ss_pred             h
Q 023870          125 R  125 (276)
Q Consensus       125 ~  125 (276)
                      .
T Consensus       267 ~  267 (284)
T TIGR00536       267 N  267 (284)
T ss_pred             E
Confidence            4

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.15  E-value=0.00053  Score=63.06  Aligned_cols=53  Identities=15%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             eEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           43 IITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        43 v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      |.|.+.++.+.+++ .+.||+|+|.+++.++..   ..+++.+++.|+|||+|++..
T Consensus       206 V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        206 VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             CEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            78888998876554 678999999999888864   789999999999999988664

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.07  E-value=0.0038  Score=60.73  Aligned_cols=94  Identities=17%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             CCCCCcEEEEccCCCCc---HH------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEec-
Q 023870            4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSI-   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~---~~------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~-   66 (276)
                      ...|++||++..|.+.-   +.            ++.+.|++.+++++...+.. +.++.+|+..++ ++++||+|+.- 
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence            35788999998887631   11            12277788888877766654 788999998775 56789999952 


Q ss_pred             ---c--cc------ccC-C--------h--HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 ---S--SS------HEL-P--------G--DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ---~--~l------~~~-~--------~--~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                         .  .+      .|. .        .  ..+|.+++++|||||+|++++-+-
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence               1  11      111 1        1  358999999999999999998664

>PLN02366 spermidine synthase

Probab=97.06  E-value=0.0025  Score=59.23  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=63.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCC--CCCCCceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~l--p~~~~sfD~V   63 (276)
                      +...+||+|+.|.+.-++.+.              +.|++.+++....     .+.+++++.+|+...  ..+.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            567889999988765444333              4678888776532     245688998986432  1235789999


Q ss_pred             EeccccccCC-----hHHHHHHHHHhccCCcEEEEEe
Q 023870           64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        64 ~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ++-..-.+.+     ..++++.+++.|+|||.|+++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            9854332222     2679999999999999998754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.03  E-value=0.0079  Score=58.37  Aligned_cols=95  Identities=14%  Similarity=0.078  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCC-CCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLP-VESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp-~~~~sfD~V~s~   66 (276)
                      ++.|.+||++..+.+.-.-               ++.+.|++.+++++...+.. +.+.++|+..++ +..++||.|++-
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4678899999877763211               12267778888777766654 788899988776 556789999962


Q ss_pred             c---ccccC---C----------------h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 S---SSHEL---P----------------G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~---~l~~~---~----------------~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .   .+..+   +                . .++|.++++.|||||+++.++-+-
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            1   11111   1                1 456889999999999999988764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.02  E-value=0.0054  Score=55.25  Aligned_cols=114  Identities=16%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCC---CCceeE
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVE---SFSIDT   62 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~---~~sfD~   62 (276)
                      .+++|++|+=.+.|.+.-...+.               +...+.|++.....+.  .+.+...|+..-.|+   ++.||.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            47899999999888874322222               5556777777776665  488899998654443   368999


Q ss_pred             EEeccccccCChHHHHHHHHHhc-cCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           63 VLSISSSHELPGDQLLEEISRVL-KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        63 V~s~~~l~~~~~~~~l~ei~rvL-KPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                      |+.=..--    -.++..+.++| ||||+|.+..+.      +.+. +.+...|...||.+++..+
T Consensus       117 vfLDlp~P----w~~i~~~~~~L~~~gG~i~~fsP~------ieQv-~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  117 VFLDLPDP----WEAIPHAKRALKKPGGRICCFSPC------IEQV-QKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             EEEESSSG----GGGHHHHHHHE-EEEEEEEEEESS------HHHH-HHHHHHHHHTTEEEEEEEE
T ss_pred             EEEeCCCH----HHHHHHHHHHHhcCCceEEEECCC------HHHH-HHHHHHHHHCCCeeeEEEE
Confidence            98754322    35789999999 999999998876      2221 1344567888999887654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.00  E-value=0.00099  Score=57.94  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           42 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        42 ~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .|.|.+.++.+.+.+.+.||+|+|.+++.++..   ..+++.+++.|+|||+|++..
T Consensus       119 ~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  119 MVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             ceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            488999998885556789999999999999886   789999999999999999865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.00  E-value=0.0012  Score=58.24  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc
Q 023870           26 NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK  101 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~  101 (276)
                      +..++.|++........ ..+.+..+++..-+...||+|++-..+.|+.+   -++|+.+...|+|+|.+++.+......
T Consensus        88 ~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~  167 (218)
T PF05891_consen   88 EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG  167 (218)
T ss_dssp             HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred             HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence            55566666554432233 45666778777655679999999999999987   678999999999999999998654211


Q ss_pred             --------hhHHHHHHHHHHHHHHCCCcchhhh
Q 023870          102 --------GDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus       102 --------~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                              ..+.+..+.+.+.+..||+.-+...
T Consensus       168 ~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  168 FDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             EEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             CcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence                    1112223466777899999876644

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.99  E-value=0.008  Score=54.43  Aligned_cols=94  Identities=12%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      +++|++||++..+.+.-.-               ++.+.|++.+++++...+. ++.+..+|+..++.....||+|+.-.
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            4678899999887653211               2226677777777766654 47888888887766566799999632


Q ss_pred             c------cc--------cC-------C-h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 S------SH--------EL-------P-G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~------l~--------~~-------~-~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .      +.        +.       . . .++|.++.+.|||||+|+.++-+
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            1      10        10       0 1 45899999999999999988754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.96  E-value=0.0065  Score=54.04  Aligned_cols=93  Identities=12%  Similarity=-0.073  Sum_probs=66.1

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhh-------------hhCCCCeEEEeccCCCCCCC---
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAV-------------EQCDPQIITQASSLSQLPVE---   56 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~-------------~~~~~~v~~~~~d~~~lp~~---   56 (276)
                      ..|.+||+...|.+..+.-+            .+..++.+.+..             ...+..+.+.++|+-+++..   
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            35689999999986543211            133344332210             11245689999999988642   


Q ss_pred             CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           57 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+.||+|+-...++.++.   ....+.++++|+|||.+++....
T Consensus       122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            257999999888888886   78999999999999999887653

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.82  E-value=0.00099  Score=60.70  Aligned_cols=55  Identities=36%  Similarity=0.526  Sum_probs=50.4

Q ss_pred             EEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 023870           44 ITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        44 ~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ....+|+.++|+.+.+||.++++.++||+..    ..+++|+.|+|+|||...++.|..
T Consensus        88 ~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen   88 NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            5677999999999999999999999999875    779999999999999999999874

>PHA03411 putative methyltransferase; Provisional

Probab=96.81  E-value=0.0081  Score=54.92  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .+.+||.++.|.+.....+              .+.|++.++++.    .++.++.+|+..+.. ..+||+|+++-.+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~  138 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES-NEKFDVVISNPPFGK  138 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence            4568999988887553222              267777776653    357889999987653 468999999776655


Q ss_pred             CCh---------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           72 LPG---------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        72 ~~~---------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      .+.                     ..++....++|+|+|.+++.-.+.. ...-.-..++.++.|..+||+..
T Consensus       139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-~y~~sl~~~~y~~~l~~~g~~~~  210 (279)
T PHA03411        139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-YYDGTMKSNKYLKWSKQTGLVTY  210 (279)
T ss_pred             cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-cccccCCHHHHHHHHHhcCcEec
Confidence            321                     2456777889999998877644321 10000112366778999999854

>PRK04457 spermidine synthase; Provisional

Probab=96.80  E-value=0.0097  Score=53.93  Aligned_cols=94  Identities=9%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC--CCCeEEEeccCCC-CCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~-lp~~~~sfD~V~s~~   67 (276)
                      +...+||+|+.|.+.-+..+.              +.|++.|++.....  ..++.++.+|+.. +.-..++||+|+.-.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            456789999888765322221              78888888765432  3568888898753 232346899999742


Q ss_pred             c-cccC----ChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 S-SHEL----PGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~-l~~~----~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      . ....    ...++++++.++|+|||+|++..+..
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            1 1111    22799999999999999999976653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.78  E-value=0.018  Score=55.92  Aligned_cols=93  Identities=18%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s   65 (276)
                      ++.|++||++..+.+.-...+               .+.|++.+++++...+. ++.++.+|+..++  ++ ++||+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence            467889999988876422111               15667777777766654 3888999987763  33 78999997


Q ss_pred             cccc------ccCC----------------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSS------HELP----------------G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l------~~~~----------------~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ....      .+.+                . ..+|.+++++|||||+|+.++-.
T Consensus       327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            4321      1000                0 35799999999999999977644

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.77  E-value=0.0074  Score=52.42  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             CCCCCCCcEEEEccCCCCcHHHH-------------------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCC
Q 023870            2 DTGKMQSAVLALSEDKILPVSAV-------------------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVE   56 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~~~~~v-------------------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~   56 (276)
                      ..+|+|+.|..+|.|.+-=-+.+                         ...|...+++.. .  -+++.+-..+-.++ +
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~--aN~e~~~~~~~A~~-~  119 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-Y--ANVEVIGKPLVALG-A  119 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-h--hhhhhhCCcccccC-C
Confidence            46899999999999875210101                         133333333321 1  12223333344444 4


Q ss_pred             CCceeEEEeccccccC------Ch--HHHHHHHHHhccCCcEEEEEecCCCC---chhH----HHHHHHHHHHHHHCCCc
Q 023870           57 SFSIDTVLSISSSHEL------PG--DQLLEEISRVLKPGGTILIYKKLTSD---KGDV----DKAISALEGKLLLAGFL  121 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~------~~--~~~l~ei~rvLKPgG~l~i~~~~~~~---~~~~----~~~~~~l~~~l~laGF~  121 (276)
                      .+..|+++.....|-+      +.  ..+.+++++.|||||.+.+.++....   ..+.    +.....+..+...+||.
T Consensus       120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk  199 (238)
T COG4798         120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK  199 (238)
T ss_pred             CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence            5566666654433222      22  78999999999999999999986421   1110    01123566788899998


Q ss_pred             chh
Q 023870          122 DAQ  124 (276)
Q Consensus       122 ~v~  124 (276)
                      -..
T Consensus       200 l~a  202 (238)
T COG4798         200 LEA  202 (238)
T ss_pred             eee
Confidence            543

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.00042  Score=57.90  Aligned_cols=55  Identities=22%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.++.-.....+|.++|.|+|++..++.|+.-   ..++++++|+|||||+|-+..+.
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            33333333466899999999999888777653   78999999999999999999775

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.65  E-value=0.013  Score=54.98  Aligned_cols=92  Identities=21%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             CCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhh-------C----CCCeEEEeccCCCC----CCCC
Q 023870            6 MQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQ-------C----DPQIITQASSLSQL----PVES   57 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~-------~----~~~v~~~~~d~~~l----p~~~   57 (276)
                      .+..||++..|.+..+..             +...-++.|++|..+       .    .....++.+|....    -+++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            789999999987765332             224445556666511       1    12356777766432    1333


Q ss_pred             --CceeEEEeccccccCC-h----HHHHHHHHHhccCCcEEEEEecC
Q 023870           58 --FSIDTVLSISSSHELP-G----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        58 --~sfD~V~s~~~l~~~~-~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                        ..||+|-+.+++|+.- +    +.+|..+.+.|||||+|+.+.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence              5999999999998843 2    67999999999999999999875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.61  E-value=0.02  Score=52.03  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhh-----hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            7 QSAVLALSEDKILPVSAVL------------NAIRDLGDEAVE-----QCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      =.+||+++.|-+.-++.+.            +.+++.+++-..     -.+++++.+.. +.  .-..++||+|+.=.. 
T Consensus        73 pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~-  148 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE-  148 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC-
Confidence            3689999998877777666            667777766322     23556665532 21  112468999997532 


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                         .++++++.++|+|+|||.++.+..++...   ......+.+.+.. .|..+
T Consensus       149 ---~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~---~~~~~~i~~~l~~-~F~~v  195 (262)
T PRK00536        149 ---PDIHKIDGLKRMLKEDGVFISVAKHPLLE---HVSMQNALKNMGD-FFSIA  195 (262)
T ss_pred             ---CChHHHHHHHHhcCCCcEEEECCCCcccC---HHHHHHHHHHHHh-hCCce
Confidence               34788999999999999999886543211   2222344445554 56543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.61  E-value=0.012  Score=54.63  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             CcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc--
Q 023870            8 SAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS--   69 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l--   69 (276)
                      .+||+++.|.+.-+..              +.+.|++.|++++...+.  ++.++.+|+.. +++..+||+|+++-..  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            5799998888643221              227788888887766554  48899999754 3345689999986311  


Q ss_pred             -----------ccCC-----------h--HHHHHHHHHhccCCcEEEEEec
Q 023870           70 -----------HELP-----------G--DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 -----------~~~~-----------~--~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                                 ++.+           .  ..+++++.+.|+|||++++...
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                       1111           1  4678899999999999998653

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.52  E-value=0.017  Score=53.46  Aligned_cols=111  Identities=19%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .+.|.+||+++.|.++-+-...             +..++.|++++...+....+....  ...+....||+|+++-...
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~  236 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD  236 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence            5678999999999875421111             455666777666555442222222  2233458999999975332


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      -+  ..++..+.+.|+|||+|+++-...   ....    .+...+.. ||..++..
T Consensus       237 vL--~~l~~~~~~~l~~~G~lIlSGIl~---~~~~----~v~~a~~~-g~~~~~~~  282 (295)
T PF06325_consen  237 VL--LELAPDIASLLKPGGYLILSGILE---EQED----EVIEAYKQ-GFELVEER  282 (295)
T ss_dssp             HH--HHHHHHCHHHEEEEEEEEEEEEEG---GGHH----HHHHHHHT-TEEEEEEE
T ss_pred             HH--HHHHHHHHHhhCCCCEEEEccccH---HHHH----HHHHHHHC-CCEEEEEE
Confidence            11  567888999999999999986542   1111    44445554 99865543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.51  E-value=0.013  Score=51.29  Aligned_cols=41  Identities=32%  Similarity=0.590  Sum_probs=36.7

Q ss_pred             CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           57 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+||+|++++++|..+-   +.+++...++|+|||.|+++-+.
T Consensus       100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen  100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            569999999999998874   88999999999999999998764

The function of this family is unknown.

>TIGR00417 speE spermidine synthase

Probab=96.48  E-value=0.021  Score=51.78  Aligned_cols=90  Identities=17%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCC-CCCCCCceeEEEe
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQ-LPVESFSIDTVLS   65 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~-lp~~~~sfD~V~s   65 (276)
                      ...+||+++.|.+.-++.+.              +.|++.+++.....     ..++.++.+|+.. +.-..++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            45599999888764333332              55677776654321     2456677676533 2223578999998


Q ss_pred             ccccccCC-----hHHHHHHHHHhccCCcEEEEEe
Q 023870           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        66 ~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ......-+     ..++++.+++.|+|||.+++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            55422211     3688999999999999999874

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.46  E-value=0.0053  Score=54.02  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             EEeccCCCCCCC---CCceeEEEeccccccCCh----HHHHHHHHHhccCCcE-----EEEEecCCCCchhHHHHHHHHH
Q 023870           45 TQASSLSQLPVE---SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALE  112 (276)
Q Consensus        45 ~~~~d~~~lp~~---~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~-----l~i~~~~~~~~~~~~~~~~~l~  112 (276)
                      ..+.|+-+.|+|   ++.||+|.++.++.++|+    -+.+..+++.|+|+|.     |++..+.+-....--...+.+.
T Consensus        87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~  166 (219)
T PF11968_consen   87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLR  166 (219)
T ss_pred             ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHH
Confidence            355677777764   779999999999999996    5699999999999999     9888876421100000112556


Q ss_pred             HHHHHCCCcchhhh
Q 023870          113 GKLLLAGFLDAQRI  126 (276)
Q Consensus       113 ~~l~laGF~~v~~~  126 (276)
                      ..+..-||..+...
T Consensus       167 ~im~~LGf~~~~~~  180 (219)
T PF11968_consen  167 EIMESLGFTRVKYK  180 (219)
T ss_pred             HHHHhCCcEEEEEE
Confidence            67899999987654

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.43  E-value=0.013  Score=54.94  Aligned_cols=113  Identities=21%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             CCCCCCCcEEEEccCCCCc------------HHHHHHHHHHHHHHhhhhCCCC-eEEEec-cCCCCCCCCCceeEEEecc
Q 023870            2 DTGKMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQ-IITQAS-SLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~~------------~~~v~~~m~~~A~~~~~~~~~~-v~~~~~-d~~~lp~~~~sfD~V~s~~   67 (276)
                      ..++.|..||+=-.|.+.=            ..++.+.|.+-|+.+....+.. ..+... |+..+||++++||.|++=.
T Consensus       193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            3567777777643333211            2366789999888888776643 444444 9999999999999999832


Q ss_pred             c------ccc--CCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           68 S------SHE--LPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        68 ~------l~~--~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      .      ..-  +..  .++|..++++||+||++++..+.            .-...+...||..+...
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~------------~~~~~~~~~~f~v~~~~  329 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR------------DPRHELEELGFKVLGRF  329 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC------------cchhhHhhcCceEEEEE
Confidence            1      111  223  78999999999999999998763            11335777888865543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.40  E-value=0.013  Score=49.12  Aligned_cols=89  Identities=9%  Similarity=0.023  Sum_probs=61.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +..|..||.++.|.+.-...+.            +.|.+.++++... ..++.++.+|+.++++++..||.|+++..+|.
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence            3567789999998864433232            5677777766543 34688999999999988878999999876654


Q ss_pred             CChHHHHHHHHHh--ccCCcEEEEEe
Q 023870           72 LPGDQLLEEISRV--LKPGGTILIYK   95 (276)
Q Consensus        72 ~~~~~~l~ei~rv--LKPgG~l~i~~   95 (276)
                      .  ...+..+.+.  +.++|.|+++.
T Consensus        90 ~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       90 S--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             H--HHHHHHHHhcCCCcceEEEEEEH
Confidence            2  3444444433  44788887765

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.29  E-value=0.046  Score=49.10  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCC-CCCCC-ceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQL-PVESF-SIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~l-p~~~~-sfD~V   63 (276)
                      +...+||+++.|.+..++.+.              +.+++.+++-...     .+.+++.+.+|+... .-... .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            356789999988876555443              6777777664432     346788888887532 22233 89999


Q ss_pred             Eecccc-----ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870           64 LSISSS-----HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (276)
Q Consensus        64 ~s~~~l-----~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF  120 (276)
                      +.-..-     ..+-..++++.+.+.|+|||.+++........   ......+.+.++....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~---~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH---PELFKSILKTLRSVFP  213 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT---HHHHHHHHHHHHTTSS
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc---hHHHHHHHHHHHHhCC
Confidence            973221     11224799999999999999999887443211   1222344455555444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.26  E-value=0.047  Score=54.16  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             CCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            7 QSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +.+||.++.|.+.-+..              +.+.|++.|++++...+.  ++.++.+|+.. +++.++||+|+++-...
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence            46799998888643221              227788888887765553  47888888743 34466899999953211


Q ss_pred             --------------cCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           71 --------------ELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        71 --------------~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                                    +.+            . ..++.++.++|+|||.|++.....     ..   +.+...+...||..+
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-----q~---~~v~~~~~~~g~~~~  289 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-----QE---EAVTQIFLDHGYNIE  289 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-----hH---HHHHHHHHhcCCCce
Confidence                          100            0 346678889999999998754321     11   145555677898755


Q ss_pred             hh
Q 023870          124 QR  125 (276)
Q Consensus       124 ~~  125 (276)
                      ..
T Consensus       290 ~~  291 (506)
T PRK01544        290 SV  291 (506)
T ss_pred             EE
Confidence            43

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.18  E-value=0.076  Score=45.77  Aligned_cols=109  Identities=12%  Similarity=0.059  Sum_probs=71.9

Q ss_pred             CCCCCCcEEEEccCCCCc-HHHHH-------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILP-VSAVL-------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~-~~~v~-------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|+.+++|+.|.+.- ++-+.             +.+++..++++...+. ++..+.+++-..--...+||.|+..-
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            367899999998888632 22221             4456666666655554 48888888864321223899999876


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      . -  .-+.+|+.+...|||||+++..-...   +    ....+...+...||.
T Consensus       111 g-~--~i~~ile~~~~~l~~ggrlV~naitl---E----~~~~a~~~~~~~g~~  154 (187)
T COG2242         111 G-G--NIEEILEAAWERLKPGGRLVANAITL---E----TLAKALEALEQLGGR  154 (187)
T ss_pred             C-C--CHHHHHHHHHHHcCcCCeEEEEeecH---H----HHHHHHHHHHHcCCc
Confidence            5 2  23689999999999999999776442   1    112444567777774

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.09  E-value=0.025  Score=51.25  Aligned_cols=80  Identities=24%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             EEeccCCCC-CCCC-----CceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCc--------hhHH
Q 023870           45 TQASSLSQL-PVES-----FSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVD  105 (276)
Q Consensus        45 ~~~~d~~~l-p~~~-----~sfD~V~s~~~l~~~~----~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--------~~~~  105 (276)
                      ++..|+.+. |+..     ..||+|++++.+...-    . ..+++.+.+.|||||.|++......+.        ..+.
T Consensus       138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~  217 (256)
T PF01234_consen  138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP  217 (256)
T ss_dssp             EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred             EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence            455677654 3433     2599999987654322    2 789999999999999999887654321        1122


Q ss_pred             HHHHHHHHHHHHCCCcchh
Q 023870          106 KAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus       106 ~~~~~l~~~l~laGF~~v~  124 (276)
                      -..+.++..|..+||....
T Consensus       218 l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  218 LNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             B-HHHHHHHHHHTTEEEEE
T ss_pred             CCHHHHHHHHHHcCCEEEe
Confidence            2235778889999997543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.09  E-value=0.081  Score=46.93  Aligned_cols=124  Identities=23%  Similarity=0.251  Sum_probs=76.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHH---HH----------------HHHHHHHHHhhhhCCCCeEEEeccCCCC---CCCCCce
Q 023870            3 TGKMQSAVLALSEDKILPVSA---VL----------------NAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSI   60 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~---v~----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~~sf   60 (276)
                      -+++|.+||.++-..++.+..   ++                ..++++|++|     .+|.-+.+|+..-   ..--+.+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--E
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcccccc
Confidence            367899999998877665443   33                2445667766     7788788888642   1123489


Q ss_pred             eEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccccCC
Q 023870           61 DTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPA  134 (276)
Q Consensus        61 D~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~  134 (276)
                      |+|++-.+   .++  +-++......||+||.+++.--...  +..+...+++.-...|+..||...+.....|+..+
T Consensus       145 DvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d  219 (229)
T PF01269_consen  145 DVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD  219 (229)
T ss_dssp             EEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT
T ss_pred             cEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC
Confidence            99988543   233  5677778889999999998864321  11233455666667788889998777766555433

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.05  E-value=0.0098  Score=54.22  Aligned_cols=84  Identities=18%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             CeEEEeccCCCCCCCC---CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchh--------HHHHHH
Q 023870           42 QIITQASSLSQLPVES---FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGD--------VDKAIS  109 (276)
Q Consensus        42 ~v~~~~~d~~~lp~~~---~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~--------~~~~~~  109 (276)
                      ++....||+..+..++   ++||+|++.+-+---++ -+.+..|+++|||||.++=.-+..-+..+        +.-+++
T Consensus       145 ~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~e  224 (270)
T PF07942_consen  145 NLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLE  224 (270)
T ss_pred             ceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHH
Confidence            4677788887776555   79999999876655556 78999999999999966533221111111        333467


Q ss_pred             HHHHHHHHCCCcchhh
Q 023870          110 ALEGKLLLAGFLDAQR  125 (276)
Q Consensus       110 ~l~~~l~laGF~~v~~  125 (276)
                      ++.......||..+..
T Consensus       225 Ei~~l~~~~GF~~~~~  240 (270)
T PF07942_consen  225 EIKELIEKLGFEIEKE  240 (270)
T ss_pred             HHHHHHHHCCCEEEEE
Confidence            8888888999997654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.03  E-value=0.024  Score=51.31  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      ...++|+|+-|-+.--..|.            ..|+.+.++    .+-.+..    ..++.-.+..||+|.+.+.+-...
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~~vl~----~~~w~~~~~~fDvIscLNvLDRc~  165 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGFTVLD----IDDWQQTDFKFDVISCLNVLDRCD  165 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCCeEEe----hhhhhccCCceEEEeehhhhhccC
Confidence            34568999766642112222            445444333    3333322    222333356899999999986655


Q ss_pred             h-HHHHHHHHHhccCCcEEEEEec
Q 023870           74 G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        74 ~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      . ..+|++|++.|+|+|++++...
T Consensus       166 ~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  166 RPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             CHHHHHHHHHHHhCCCCEEEEEEE
Confidence            4 8899999999999999988754

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.03  E-value=0.074  Score=46.08  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             CCeEEEeccCCC-CC--CCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870           41 PQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        41 ~~v~~~~~d~~~-lp--~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .++.++.+++.. ++  ++++++|.|+.++.--|.         ..+.++.+++++|+|||.|.+.+-
T Consensus        67 ~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   67 KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            458899999877 33  567999999998853332         237899999999999999999874

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.97  E-value=0.013  Score=52.25  Aligned_cols=116  Identities=15%  Similarity=0.111  Sum_probs=77.4

Q ss_pred             CcEEEEccCCCCc---HHH---------HHHHHHHHHHHhhhhCCCCeEEEeccCC-CCC-CCCCceeEEEeccccccCC
Q 023870            8 SAVLALSEDKILP---VSA---------VLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP   73 (276)
Q Consensus         8 ~~vL~v~~~~~~~---~~~---------v~~~m~~~A~~~~~~~~~~v~~~~~d~~-~lp-~~~~sfD~V~s~~~l~~~~   73 (276)
                      .++|+++.|.++.   +++         +++.|+++|+++--..    ...++++. -++ ...+.||+|++.-++.++-
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG  202 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD----TLYVAEAVLFLEDLTQERFDLIVAADVLPYLG  202 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH----HHHHHHHHHHhhhccCCcccchhhhhHHHhhc
Confidence            4567777777654   343         4488999988763211    12334443 233 5678999999999888888


Q ss_pred             h-HHHHHHHHHhccCCcEEEEEecCCCC-----chhHHH---HHHHHHHHHHHCCCcchhhhh
Q 023870           74 G-DQLLEEISRVLKPGGTILIYKKLTSD-----KGDVDK---AISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        74 ~-~~~l~ei~rvLKPgG~l~i~~~~~~~-----~~~~~~---~~~~l~~~l~laGF~~v~~~~  127 (276)
                      + +.++.-+...|+|||.|.|+.-....     +.+..+   .-+.+...+...||..++...
T Consensus       203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence            7 88999999999999999998643221     112111   123566778999998766543

>PLN02823 spermine synthase

Probab=95.92  E-value=0.031  Score=52.56  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEEe
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS   65 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~s   65 (276)
                      ...+||+++.|.+.-++.+.              +.+++.|++....     .+.+++++.+|+.. +.-..++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            34689999888764433332              7778888776532     24568888888754 3445678999998


Q ss_pred             cccc-------ccCChHHHHH-HHHHhccCCcEEEEEe
Q 023870           66 ISSS-------HELPGDQLLE-EISRVLKPGGTILIYK   95 (276)
Q Consensus        66 ~~~l-------~~~~~~~~l~-ei~rvLKPgG~l~i~~   95 (276)
                      -..-       ..+-..++++ .+.+.|+|||.++++.
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            4321       1223468888 8999999999988764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.06  Score=49.71  Aligned_cols=89  Identities=22%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCe-EEEeccCCCCCCCCCceeEEEecccccc
Q 023870            7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v-~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +-+||+++.|-+.-..              ++....++.|++.+...++.. .+..+++-+ +..+ +||+|+++-.+|.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccC
Confidence            3389999998864321              111445666777766655553 444555433 4444 9999999988875


Q ss_pred             CCh------HHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPG------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      =..      .+++.+..+.|++||.|.|.-..
T Consensus       237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~  268 (300)
T COG2813         237 GKAVVHSLAQEIIAAAARHLKPGGELWIVANR  268 (300)
T ss_pred             CcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence            322      58999999999999999888763

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.89  E-value=0.014  Score=53.15  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      |.|.+.++..-++..+.||+|+|-+++-++..   .+++..++..|+|||.|++-.
T Consensus       186 V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         186 VRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             cEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            67777777665545678999999999988875   789999999999999999865

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.85  E-value=0.022  Score=53.02  Aligned_cols=94  Identities=17%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             CCCCCcEEEEccCCCCcH-------------HHHHHHHHHHHHHhhhhC-------CCCeEEEeccCC------CCCCCC
Q 023870            4 GKMQSAVLALSEDKILPV-------------SAVLNAIRDLGDEAVEQC-------DPQIITQASSLS------QLPVES   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~-------------~~v~~~m~~~A~~~~~~~-------~~~v~~~~~d~~------~lp~~~   57 (276)
                      .++++-||.++.|.+..+             .++.+..++.|++|...-       -..+.|+.+|-.      .+++++
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            356666777666655432             144466666676665321       123677777643      345567


Q ss_pred             CceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecC
Q 023870           58 FSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~-~~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+||+|-+-+++|+. .+    +.+|+.+.+.|||||+|+-+.+.
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            779999998888873 32    67899999999999999988865

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.84  E-value=0.14  Score=46.06  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             CcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCC-CCC-CCCceeEEEeccccc-
Q 023870            8 SAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSH-   70 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~-lp~-~~~sfD~V~s~~~l~-   70 (276)
                      .+||++..|.+.-+-              ++.+.|++.|++++...+  +.++++|+.+ ++- ....||+|+++-... 
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            478999888763211              122678888887765544  4677888764 221 135799999875321 


Q ss_pred             -------------cCC--------h-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           71 -------------ELP--------G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        71 -------------~~~--------~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                                   +.+        +     ..++..+.++|||||+|++.....    ..    ..+...+...||..
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~~----~~v~~~l~~~g~~~  235 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----QA----PLAVEAFARAGLIA  235 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----hH----HHHHHHHHHCCCCc
Confidence                         100        0     366777789999999999876431    11    14556677788863

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.83  E-value=0.056  Score=47.71  Aligned_cols=89  Identities=20%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHH-HHhhh-h-----------CCCCeEEEeccCCCCCCCC-
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLG-DEAVE-Q-----------CDPQIITQASSLSQLPVES-   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A-~~~~~-~-----------~~~~v~~~~~d~~~lp~~~-   57 (276)
                      .+++.+||+...|.+..+.-+.            +..++.+ +++.. .           ...+|.+.++|+-+++-.. 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            5677889999998875533222            4444444 22111 0           1224788999998886543 


Q ss_pred             CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 023870           58 FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~   92 (276)
                      +.||+|+=...++-++.   +...+.++++|+|||+++
T Consensus       115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence            47999998888888875   789999999999999943

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.72  E-value=0.0051  Score=48.47  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=29.4

Q ss_pred             ceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEe
Q 023870           59 SIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        59 sfD~V~s~~~l~~~~----~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .||+|+|.++.-|++    |   ..+++.+++.|+|||.|++..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            499999988877765    2   568999999999999999764

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.65  E-value=0.047  Score=50.00  Aligned_cols=87  Identities=15%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             CcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhh---hCCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            8 SAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVE---QCDPQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~---~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+|+.|+.|. .|...+.                 +...+++++-+.   ..+..+.|+.+|+...+..-..||+|+...
T Consensus       122 ~rVaFIGSGP-LPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  122 SRVAFIGSGP-LPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             -EEEEE---S-S-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             ceEEEEcCCC-cchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            3899999987 6743333                 344555655444   234568999999988877777999998644


Q ss_pred             cc--ccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           68 SS--HELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l--~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ..  ..-+-.+++.++.+.++||..+++..
T Consensus       201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            22  11223899999999999999999884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.62  E-value=0.048  Score=50.09  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             cEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCCC-CCCCCceeEEEeccc
Q 023870            9 AVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQL-PVESFSIDTVLSISS   68 (276)
Q Consensus         9 ~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~l-p~~~~sfD~V~s~~~   68 (276)
                      +||+|+.|.+.-++.+.              +.+++.+++.....     .+++..+.+|.-+. .-...+||+|+.-..
T Consensus        79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t  158 (282)
T COG0421          79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST  158 (282)
T ss_pred             eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC
Confidence            89999999887666555              78888888865432     36688888887544 322338999998543


Q ss_pred             cc-----cCChHHHHHHHHHhccCCcEEEEEec
Q 023870           69 SH-----ELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        69 l~-----~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      -.     .+...++++.++|.|+++|.++.+..
T Consensus       159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            22     22248999999999999999999843

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=95.49  E-value=0.075  Score=45.89  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             CCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccc-
Q 023870            6 MQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISS-   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~-   68 (276)
                      .-++||+++.|-+.-+.              +..+...++|+..++..+..  |+|.+.|+.+-.+-...||+|+---+ 
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence            34488888776542221              22366666666655555443  99999999987888899999986332 


Q ss_pred             ----ccc-CCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           69 ----SHE-LPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 ----l~~-~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                          ++- -+.   ...+..+.++|+|||+|+|..=.. +.       ++|.....-.||.-....
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-T~-------dELv~~f~~~~f~~~~tv  204 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-TK-------DELVEEFENFNFEYLSTV  204 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-cH-------HHHHHHHhcCCeEEEEee
Confidence                221 111   346778899999999999875321 11       255556666667654433

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.39  E-value=0.085  Score=39.97  Aligned_cols=56  Identities=36%  Similarity=0.504  Sum_probs=43.0

Q ss_pred             eEEEeccCCC--CCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           43 IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        43 v~~~~~d~~~--lp~~~-~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.+..++...  +++.. ..||++......++......+.++.++|+|+|.+++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         100 VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            5677777765  78887 59999943444444434789999999999999999998764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.36  E-value=0.058  Score=48.00  Aligned_cols=88  Identities=14%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-C----CCCcee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-V----ESFSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~----~~~sfD   61 (276)
                      ....+||-++.+.+..+-.+.               +.+.+.|++.....+.  ++.++.+++.+. + +    +..+||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            456678888776664311111               6777788887776654  488999988653 2 1    246899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +|+.-..-   +. ...+.++.+.|||||.+++-+
T Consensus       147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence            99885321   22 578899999999999988765

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.16  E-value=0.21  Score=42.99  Aligned_cols=84  Identities=26%  Similarity=0.351  Sum_probs=56.2

Q ss_pred             cEEEEccCCCCcHHHHH-----------HHHH---HHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            9 AVLALSEDKILPVSAVL-----------NAIR---DLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         9 ~vL~v~~~~~~~~~~v~-----------~~m~---~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      ++++|+.|.+.|.-.+.           +.+.   ...+.-+...++. +.++.+++++ +....+||+|++....   +
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence            79999999999843222           1111   1112222333444 8899999999 6668899999997642   1


Q ss_pred             hHHHHHHHHHhccCCcEEEEEec
Q 023870           74 GDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        74 ~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      -..++.-+.+.|++||++++.-.
T Consensus       127 l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  127 LDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcC
Confidence            25788889999999999998764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.08  E-value=0.072  Score=47.11  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=56.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCC--CCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l   69 (276)
                      ..|-+||=|+=|.++-..-++             +...++-+...-.+..+|..+.+.-++.  .+++.+||.|+.-.-.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~  179 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS  179 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence            357788888766654211121             2222323222222224466666666543  3779999999985433


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+..+ ..+.+.+.|.|||+|+|.+.+..
T Consensus       180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             hHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            33444 78889999999999999877643

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=95.01  E-value=0.14  Score=45.66  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=50.4

Q ss_pred             HHHHHhhhhCCC-CeEEEeccCCCC---CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870           30 DLGDEAVEQCDP-QIITQASSLSQL---PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        30 ~~A~~~~~~~~~-~v~~~~~d~~~l---p~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ..+.+++.+.++ ++..+..|+..+   =+++++.|-|+.++.=-|.         ....+++.+.++|||||.|.+.+-
T Consensus        86 ~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220          86 AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            334455666677 889998988754   2455599999998864332         237899999999999999998874

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.63  E-value=0.027  Score=45.42  Aligned_cols=72  Identities=25%  Similarity=0.343  Sum_probs=46.8

Q ss_pred             CCeEEEeccCCC-CCCCCCceeEEEec-cccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHH
Q 023870           41 PQIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL  115 (276)
Q Consensus        41 ~~v~~~~~d~~~-lp~~~~sfD~V~s~-~~l~~~~---~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l  115 (276)
                      ..+....+|+.. ++--...||+|+.- ++...-+   +.+++++++|.++|||.|......           ..+++.|
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~L   99 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRAL   99 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHHH
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHHH
Confidence            346677788753 34334799999873 3322222   278999999999999998865533           1677899


Q ss_pred             HHCCCcch
Q 023870          116 LLAGFLDA  123 (276)
Q Consensus       116 ~laGF~~v  123 (276)
                      ..+||...
T Consensus       100 ~~aGF~v~  107 (124)
T PF05430_consen  100 QQAGFEVE  107 (124)
T ss_dssp             HHCTEEEE
T ss_pred             HHcCCEEE
Confidence            99999853

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.61  E-value=0.072  Score=52.03  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=47.2

Q ss_pred             CCeEEEeccCCCCCCCCCceeEEEeccccccCC---------h--HHHHHHHHHhccCCcEEEEEecC
Q 023870           41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---------G--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        41 ~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~---------~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+.+...++..+.|++++||+|+....++.+.         .  ...+.+++|+|+|||+++..+..
T Consensus        96 ~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen   96 PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            557899999999999999999999977665432         1  45678999999999999888773

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=94.59  E-value=0.4  Score=46.15  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             CCCCcEEEEccCCCCc-HH------------HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCCC--C--CCCceeEEE
Q 023870            5 KMQSAVLALSEDKILP-VS------------AVLNAIRDLGDEAVEQCDP---QIITQASSLSQLP--V--ESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~-~~------------~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp--~--~~~sfD~V~   64 (276)
                      ..|.+||.+..+.+.- +.            ++.+.+++.|++++...+.   ++.++++|+...-  +  ...+||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            4578899998777532 11            1227788888887766553   4789999986541  2  245899999


Q ss_pred             eccccccC---------Ch-HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHEL---------PG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~---------~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.-....-         .+ ..++....++|+|||.|+...-+
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            86432111         11 34555678999999999976643

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=94.56  E-value=0.043  Score=49.27  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=34.2

Q ss_pred             CCCCCCceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEe
Q 023870           53 LPVESFSIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        53 lp~~~~sfD~V~s~~~l~~~~----~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +.+....||+|+|.+...|++    +   ..+++.|++.|.|||+|++-.
T Consensus       160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence            356678999999977655543    3   789999999999999999654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=94.39  E-value=0.3  Score=47.45  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC----CCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ----LPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~----lp~~~~sfD~V~s~   66 (276)
                      +..|.+||++..|.+.-+..+            .+.|++.|++++...+. ++.++.+|+.+    +++.+++||+|++.
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            356789999999987542222            28888888887765554 48899999864    34556789999986


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      -.....  ...+..+.+ ++|++.++++..
T Consensus       375 PPr~g~--~~~~~~l~~-~~~~~ivyvSCn  401 (443)
T PRK13168        375 PPRAGA--AEVMQALAK-LGPKRIVYVSCN  401 (443)
T ss_pred             cCCcCh--HHHHHHHHh-cCCCeEEEEEeC
Confidence            543322  355655555 699999998863

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.32  E-value=0.11  Score=44.26  Aligned_cols=69  Identities=22%  Similarity=0.282  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecccccc-C------Ch--HHHHHHHHHhccCCcEEEEE
Q 023870           26 NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSSHE-L------PG--DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~------~~--~~~l~ei~rvLKPgG~l~i~   94 (276)
                      +.|++.|++++...+..  +.+.+.|+..+++.++++|+|++...+-. +      ..  ..+++++.|+|++ ..+++.
T Consensus        71 ~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~  149 (179)
T PF01170_consen   71 PKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT  149 (179)
T ss_dssp             HHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred             HHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence            46677777777666653  88999999999988899999999764321 1      11  5678899999999 334433


Q ss_pred             e
Q 023870           95 K   95 (276)
Q Consensus        95 ~   95 (276)
                      .
T Consensus       150 ~  150 (179)
T PF01170_consen  150 T  150 (179)
T ss_dssp             E
T ss_pred             E
Confidence            3

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.27  E-value=0.043  Score=46.32  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CCceeEEEeccccccC------------ChHHHHHHHHHhccCCcEEEEEecCCC-C-chhHHHHHHHHHHHHHHCCCcc
Q 023870           57 SFSIDTVLSISSSHEL------------PGDQLLEEISRVLKPGGTILIYKKLTS-D-KGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~------------~~~~~l~ei~rvLKPgG~l~i~~~~~~-~-~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      .++||.+.+..++.|+            .+...+.++.++|||||.|++..+.-. . .....++...++..+.+.||.-
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~  140 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW  140 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence            5679999998877553            126788999999999999999987532 1 1223344556677899999987


Q ss_pred             hhhhh
Q 023870          123 AQRIQ  127 (276)
Q Consensus       123 v~~~~  127 (276)
                      +....
T Consensus       141 i~tfs  145 (177)
T PF03269_consen  141 IDTFS  145 (177)
T ss_pred             Eeeec
Confidence            76543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.23  E-value=0.2  Score=51.61  Aligned_cols=93  Identities=13%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             CCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCC-CCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDP---QIITQASSLSQL-PVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l-p~~~~sfD~V~s~~   67 (276)
                      ..|.+||.+..+.+.-+-             ++.+.+++.|++++...+.   ++.++++|+.+. .-...+||+|++.-
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            357889998777753211             2237788888887765543   488999997542 11146899999853


Q ss_pred             ccc-------c----CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSH-------E----LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~-------~----~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ...       .    ..+ ..++..+.++|+|||.|++....
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            210       1    112 56888899999999999887644

>PLN02672 methionine S-methyltransferase

Probab=93.68  E-value=0.66  Score=49.99  Aligned_cols=113  Identities=14%  Similarity=0.030  Sum_probs=72.3

Q ss_pred             CCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCC-----------------CCeEEEeccCCCCCC
Q 023870            7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCD-----------------PQIITQASSLSQLPV   55 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~-----------------~~v~~~~~d~~~lp~   55 (276)
                      |.+||+++.|.+.-+-              ++.+.+++.|++++...+                 .++.++++|+.+.. 
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence            4578999888753211              222778888877765421                 24889999986532 


Q ss_pred             CC--CceeEEEecccc---------------c------c-------C------Ch-----HHHHHHHHHhccCCcEEEEE
Q 023870           56 ES--FSIDTVLSISSS---------------H------E-------L------PG-----DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        56 ~~--~sfD~V~s~~~l---------------~------~-------~------~~-----~~~l~ei~rvLKPgG~l~i~   94 (276)
                      ..  ..||+|+++-..               |      |       +      .+     +.++.+..++|||||.+++-
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            32  269999996321               0      0       0      11     46777888899999999876


Q ss_pred             ecCCCCchhHHHHHHHHH-HHHHHCCCcchhhhhc
Q 023870           95 KKLTSDKGDVDKAISALE-GKLLLAGFLDAQRIQL  128 (276)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~-~~l~laGF~~v~~~~~  128 (276)
                      ....     ...   .+. +.+...||..+..++.
T Consensus       278 iG~~-----q~~---~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        278 MGGR-----PGQ---AVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             ECcc-----HHH---HHHHHHHHHCCCCeeEEeee
Confidence            6431     122   455 4677799998776654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=93.65  E-value=0.72  Score=41.39  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCC---CCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVE---SFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~---~~sfD~V~s~~~l   69 (276)
                      .|.++|+++|+--+.+....             +.+++.-++.+...+.+++.+..|+.+ |+|   .+.||++++--..
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPPy  122 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPPY  122 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---S
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCCC
Confidence            47789999988765533222             666676666666667889998898864 444   4789999985321


Q ss_pred             ccCCh-HHHHHHHHHhccCCc-EEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           70 HELPG-DQLLEEISRVLKPGG-TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG-~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      . ... .-+++.-...||.-| ..++.-...   ......|..+++.+...||+....
T Consensus       123 T-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~---~~s~~~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  123 T-PEGLKLFLSRGIEALKGEGCAGYFGFTHK---EASPDKWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             S-HHHHHHHHHHHHHTB-STT-EEEEEE-TT---T--HHHHHHHHHHHHTS--EEEEE
T ss_pred             C-HHHHHHHHHHHHHHhCCCCceEEEEEecC---cCcHHHHHHHHHHHHHCCcCHHHH
Confidence            1 122 678889999999766 444433221   123445778888999999985443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=93.35  E-value=0.42  Score=46.74  Aligned_cols=52  Identities=15%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             CCCeEEEeccCCCCCCCCCceeEEEeccccccCC---hHHHHHHHHHhccCCcEEE
Q 023870           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        40 ~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~---~~~~l~ei~rvLKPgG~l~   92 (276)
                      +..|+++.++++++..+. .+|+|+|-..-....   ..+.|....|.|||+|.++
T Consensus       240 ~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  240 GDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             TTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             CCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            456999999999998765 999999943211111   2678888999999999885

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=93.24  E-value=0.35  Score=46.06  Aligned_cols=117  Identities=17%  Similarity=0.152  Sum_probs=78.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhh-----h---hCCCCeEEEeccCCCC-CCCCCc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAV-----E---QCDPQIITQASSLSQL-PVESFS   59 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~-----~---~~~~~v~~~~~d~~~l-p~~~~s   59 (276)
                      .++.--+||+++.|.++.++.+.              +.|++.+++..     .   -.++++.++..|+-+. --..+.
T Consensus       286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~  365 (508)
T COG4262         286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM  365 (508)
T ss_pred             cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence            35566789999988887766554              88999887321     1   1245688887877654 334569


Q ss_pred             eeEEEecc------ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           60 IDTVLSIS------SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        60 fD~V~s~~------~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ||.|+.-.      ++--+.+.++..-+.|.|+++|.++++-.++-...+  ..| .+...++.+||..
T Consensus       366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~--vfw-~i~aTik~AG~~~  431 (508)
T COG4262         366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR--VFW-RIDATIKSAGYRV  431 (508)
T ss_pred             ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc--eee-eehhHHHhCccee
Confidence            99998733      222233478899999999999999998766532111  112 3456789999874

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=93.08  E-value=0.98  Score=39.89  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=68.2

Q ss_pred             CCcEEEEccCCCCcHHHHH-----------HHHHH---HHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            7 QSAVLALSEDKILPVSAVL-----------NAIRD---LGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-----------~~m~~---~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +.++++|+.|.+.|.-.+-           +...+   .-+......+++ ++++.+++|++.-....||+|++..... 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~-  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS-  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence            6899999999998843211           11111   123333345665 8999999998864322299999965321 


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                        -..++.-....+|+||.++..-+..     ....+.+.+......||....
T Consensus       147 --L~~l~e~~~pllk~~g~~~~~k~~~-----~~~e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         147 --LNVLLELCLPLLKVGGGFLAYKGLA-----GKDELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             --hHHHHHHHHHhcccCCcchhhhHHh-----hhhhHHHHHHHHHhhcCcEEE
Confidence              1456666788999999986554332     122233556667777776543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=92.74  E-value=0.63  Score=45.83  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHH---------------HHHHHHHHhhhhCCCC-eEEEeccCCCCC-CCCCceeEEEe-
Q 023870            4 GKMQSAVLALSEDKILPVSAVLN---------------AIRDLGDEAVEQCDPQ-IITQASSLSQLP-VESFSIDTVLS-   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~---------------~m~~~A~~~~~~~~~~-v~~~~~d~~~lp-~~~~sfD~V~s-   65 (276)
                      .++|++||++....+.=.-.+..               .-++..++++...+.. +.+...|...++ ...+.||.|+. 
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            36889999986655422222222               2233345555555654 666667776553 33467999994 


Q ss_pred             ---ccc--c--------ccC-------Ch--HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ---ISS--S--------HEL-------PG--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ---~~~--l--------~~~-------~~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                         +..  +        .|-       ..  .++|...++.|||||+|+.++=+
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence               211  1        111       01  56888899999999999877644

>PRK13699 putative methylase; Provisional

Probab=92.63  E-value=0.23  Score=44.06  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=43.2

Q ss_pred             EEeccCCCC--CCCCCceeEEEeccccc----c-----C-----Ch--HHHHHHHHHhccCCcEEEEEecCCCCchhHHH
Q 023870           45 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L-----PG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK  106 (276)
Q Consensus        45 ~~~~d~~~l--p~~~~sfD~V~s~~~l~----~-----~-----~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~  106 (276)
                      ...+|..++  .++++++|+|+.--...    .     +     ..  ..++.|++|+|||||.+++.....    ... 
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~~-   78 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RVD-   78 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cHH-
Confidence            344555433  57788888888742110    0     0     01  578899999999999998643221    111 


Q ss_pred             HHHHHHHHHHHCCCcchh
Q 023870          107 AISALEGKLLLAGFLDAQ  124 (276)
Q Consensus       107 ~~~~l~~~l~laGF~~v~  124 (276)
                         .+...+..+||.-.+
T Consensus        79 ---~~~~al~~~GF~l~~   93 (227)
T PRK13699         79 ---RFMAAWKNAGFSVVG   93 (227)
T ss_pred             ---HHHHHHHHCCCEEee
Confidence               333456788997543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=92.37  E-value=0.87  Score=42.08  Aligned_cols=101  Identities=11%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhhhCCCC--eEEEeccCCCC-CCC--CCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEe-
Q 023870           26 NAIRDLGDEAVEQCDPQ--IITQASSLSQL-PVE--SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYK-   95 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~--v~~~~~d~~~l-p~~--~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~-   95 (276)
                      +.-++..++.+...++.  ++|.++|+-+. .+.  .-..++++.+-.+..+++    ...++-+++++.|||+++... 
T Consensus       171 ~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ  250 (311)
T PF12147_consen  171 PINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ  250 (311)
T ss_pred             HHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence            33445555655565654  48999987543 122  335688888777777776    446778999999999999876 


Q ss_pred             -cCCCC----------ch--hH---HHHHHHHHHHHHHCCCcchhhh
Q 023870           96 -KLTSD----------KG--DV---DKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        96 -~~~~~----------~~--~~---~~~~~~l~~~l~laGF~~v~~~  126 (276)
                       |++.-          .+  .+   +++-.++......|||..++..
T Consensus       251 PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~  297 (311)
T PF12147_consen  251 PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR  297 (311)
T ss_pred             CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence             54321          00  00   1122467778899999977654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=92.24  E-value=1.1  Score=43.18  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCC----CCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQL----PVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l----p~~~~sfD~V~s~   66 (276)
                      ++.+.+||++..|.+.-+-.+            .+.|++.|++++...+. ++.++.+|+...    ++...+||+|+..
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            356788999999887442212            27788888887665554 488999998652    3445689999875


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      -.-..+ ...+++.+.+ ++|++.++++.
T Consensus       370 PPr~G~-~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       370 PPRKGC-AAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             cCCCCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence            432111 2567776654 89998887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=92.19  E-value=0.55  Score=44.17  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=42.2

Q ss_pred             eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |..+.+|+-+- .|.  -|+|+.-..+|+|.|   -++|+.++..|+|||++++.+..
T Consensus       223 V~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  223 VEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             cceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            66677777533 343  349999999999997   78999999999999999999873

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=92.10  E-value=0.33  Score=42.99  Aligned_cols=70  Identities=20%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhhhhCCCC--eEEEe-ccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           26 NAIRDLGDEAVEQCDPQ--IITQA-SSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~--v~~~~-~d~~-~lp-~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.+.+.|++.....+..  ++.+. +|.. .+. +..++||+|+.=..   =.+ +.++..+.+.|+|||.+++-+...
T Consensus        94 ~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122          94 EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            78888898888777654  66666 3543 222 45789999998432   122 789999999999999999887654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=92.00  E-value=1.1  Score=39.08  Aligned_cols=93  Identities=8%  Similarity=-0.041  Sum_probs=58.4

Q ss_pred             CCCCcEEEEccCCCCcH-HHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPV-SAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~-~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~~l   69 (276)
                      ..|.+||++..|.+.-. ..+.            +.+.+.+++.++..+. ++.++.+|+.. ++....+||+|++.-.+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            35788999988875321 1111            4555666666655443 47888888764 33334579999997664


Q ss_pred             ccCChHHHHHHHHH--hccCCcEEEEEecC
Q 023870           70 HELPGDQLLEEISR--VLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~~~~l~ei~r--vLKPgG~l~i~~~~   97 (276)
                      +.--...++..+.+  +|+|+|.+++....
T Consensus       132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        132 RKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            32112556666655  37999988877654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.84  E-value=0.61  Score=46.31  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=42.3

Q ss_pred             CeEEEeccCCCC--CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870           42 QIITQASSLSQL--PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        42 ~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++.++..++..+  -|+++++|.|+.++.--|.         ..+.++..++++|||||.|.+.+-
T Consensus       398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            466666676533  3788999999998864442         238899999999999999998874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.63  E-value=0.15  Score=50.06  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=36.8

Q ss_pred             CCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 023870           51 SQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        51 ~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |.++.=+.+||+|.+...+..+.+    ..+|-|+-|+|+|+|.++|.+..
T Consensus       419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            445555789999998765544332    78999999999999999999854

; GO: 0008168 methyltransferase activity

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.57  E-value=0.98  Score=39.89  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhhhC-----------CCCeEEEeccCCCCC
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVEQC-----------DPQIITQASSLSQLP   54 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~~~-----------~~~v~~~~~d~~~lp   54 (276)
                      .+++|.+.|.++.|.+- +..+.                 +.+.+++++++...           ...+.++.+|....-
T Consensus        79 ~L~pG~s~LdvGsGSGY-Lt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~  157 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGY-LTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY  157 (237)
T ss_pred             hhccCcceeecCCCccH-HHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence            46788888888777652 11121                 34445555544321           234678899998887


Q ss_pred             CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           55 VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      -+.+.||.|..-.+.     ++..+++...|+|||++++-..
T Consensus       158 ~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  158 AEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CccCCcceEEEccCc-----cccHHHHHHhhccCCeEEEeec
Confidence            778899999987543     3556889999999999997653

>PLN02476 O-methyltransferase

Probab=91.43  E-value=0.69  Score=42.45  Aligned_cols=89  Identities=12%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC-C----CCCcee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP-V----ESFSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp-~----~~~sfD   61 (276)
                      ....+||-++.+.+...-.+.               +.+.+.|++.....+.  +|.++.+++.+ |+ +    ..++||
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            445677777777654321111               5667778877776665  48888898754 32 2    146899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .|+.=..-   .. ...+..+.+.|+|||.+++-+.
T Consensus       197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence            99985421   12 6788999999999999987654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.28  E-value=2.3  Score=40.82  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             CCCCCceeEEEeccccccCCh-HH--------------------------------------HHHHHHHhccCCcEEEEE
Q 023870           54 PVESFSIDTVLSISSSHELPG-DQ--------------------------------------LLEEISRVLKPGGTILIY   94 (276)
Q Consensus        54 p~~~~sfD~V~s~~~l~~~~~-~~--------------------------------------~l~ei~rvLKPgG~l~i~   94 (276)
                      =||+++.+++++++++||+.. ++                                      +|+-=++-|+|||++++.
T Consensus       157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~  236 (386)
T PLN02668        157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV  236 (386)
T ss_pred             ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence            378999999999999999763 11                                      122224568899999999


Q ss_pred             ecCCCCc----hh-HHHHH----HHHHHHHHHCCCcchhhhh
Q 023870           95 KKLTSDK----GD-VDKAI----SALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        95 ~~~~~~~----~~-~~~~~----~~l~~~l~laGF~~v~~~~  127 (276)
                      ..+....    .+ ....|    ......|..-|.++.+...
T Consensus       237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~d  278 (386)
T PLN02668        237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRD  278 (386)
T ss_pred             EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            8664211    11 12222    2334567788888766553

>PHA03412 putative methyltransferase; Provisional

Probab=90.84  E-value=0.93  Score=40.70  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             CCcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            7 QSAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+||++..|.+.-+..+.                 +.|.++|++..    ..+.++.+|+...++ +.+||+|+++-.+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~-~~~FDlIIsNPPY  124 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTEF-DTLFDMAISNPPF  124 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence            5688888777763322222                 44456665543    347788899987665 5689999997543


Q ss_pred             ccC--------C---h--HHHHHHHHHhccCCcE
Q 023870           70 HEL--------P---G--DQLLEEISRVLKPGGT   90 (276)
Q Consensus        70 ~~~--------~---~--~~~l~ei~rvLKPgG~   90 (276)
                      +-.        +   .  ..++....|++++|+.
T Consensus       125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            311        1   1  5688888887777765

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=90.50  E-value=0.75  Score=43.30  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=58.6

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .+-.||+|+.|.+.- .-+-             ..|.+.|++.+...+..  |+++++.++++.+|-..+|+|++-+.-+
T Consensus        60 ~dK~VlDVGcGtGIL-S~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy  138 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGIL-SMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY  138 (346)
T ss_pred             CCCEEEEcCCCccHH-HHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence            345678888776532 1111             45556676665554443  7899999999888889999999976544


Q ss_pred             cCC--h--HHHHHHHHHhccCCcEEE
Q 023870           71 ELP--G--DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        71 ~~~--~--~~~l~ei~rvLKPgG~l~   92 (276)
                      ++-  +  ..+|-.=-+.|+|||.++
T Consensus       139 ~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  139 FLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHhhhhhhhhhhhhhccCCCceEc
Confidence            332  1  455555568999999986

>PRK11524 putative methyltransferase; Provisional

Probab=90.39  E-value=0.33  Score=44.31  Aligned_cols=52  Identities=21%  Similarity=0.209  Sum_probs=36.0

Q ss_pred             EEEeccCCCC--CCCCCceeEEEeccccc-------c---C-----Ch--HHHHHHHHHhccCCcEEEEEe
Q 023870           44 ITQASSLSQL--PVESFSIDTVLSISSSH-------E---L-----PG--DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        44 ~~~~~d~~~l--p~~~~sfD~V~s~~~l~-------~---~-----~~--~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .++.+|..+.  .+++++||+|++.-.+.       .   +     ..  ..++.+++|+|||||.|++..
T Consensus        10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524         10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            4566776553  46788999999842210       0   0     01  468999999999999999864

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=90.11  E-value=4  Score=37.37  Aligned_cols=102  Identities=23%  Similarity=0.313  Sum_probs=64.0

Q ss_pred             cEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc--c-
Q 023870            9 AVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS--H-   70 (276)
Q Consensus         9 ~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l--~-   70 (276)
                      +||+++.|.+.-+-              ++.+..++.|++++...+. ++.++++++-. ++.. .||+|+++-.+  . 
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLRG-KFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccCC-ceeEEEeCCCCCCCc
Confidence            58888887764321              2226667788888777663 34555554432 2323 99999997421  0 


Q ss_pred             ----------c------------CCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870           71 ----------E------------LPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (276)
Q Consensus        71 ----------~------------~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF  120 (276)
                                +            +.- ..++.++.+.|+|||.+++......     .   ..+...+...||
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-----~---~~v~~~~~~~~~  255 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-----G---EAVKALFEDTGF  255 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-----H---HHHHHHHHhcCC
Confidence                      0            001 5678888999999999987764321     1   156667888884

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.61  E-value=9.3  Score=33.72  Aligned_cols=120  Identities=23%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------------HHHHHHHHHhhhhCCCCeEEEeccCCCC---CCCCCceeE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------------NAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSIDT   62 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~~sfD~   62 (276)
                      ++.|.+||.++-..++.+.+|.                  ..++..+++|     .++.-+.+|+..-   .+-=+..|+
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccccE
Confidence            6789999999877776655444                  3345556655     5666677777532   122345888


Q ss_pred             EEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870           63 VLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (276)
Q Consensus        63 V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~  131 (276)
                      |+.--+   .++  +-+...+...||+||.+++.--..+  +-.+...++......|...||...+.....|.
T Consensus       149 iy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy  218 (231)
T COG1889         149 IYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY  218 (231)
T ss_pred             EEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence            876322   233  5577788999999998777654322  22334555555566788899887766655443

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.40  E-value=3  Score=38.01  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-C-eEEEeccC-CCCCCCCCceeEEEecccc
Q 023870            8 SAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-Q-IITQASSL-SQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~-v~~~~~d~-~~lp~~~~sfD~V~s~~~l   69 (276)
                      .+||+++.|.++.+..+.               +.|+++++.-...... . ..+..... +..++.  ..|+|++.+++
T Consensus        35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L  112 (274)
T PF09243_consen   35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVL  112 (274)
T ss_pred             ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhh
Confidence            478888888765433222               6677776664332211 1 11111111 122332  33999999998


Q ss_pred             ccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           70 HELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ..+++   ..+++.+.+.+.+  .|++.+++..  ... +....++..|...||..+.
T Consensus       113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~--~Gf-~~i~~aR~~l~~~~~~v~A  165 (274)
T PF09243_consen  113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTP--AGF-RRIAEARDQLLEKGAHVVA  165 (274)
T ss_pred             hcCCchHHHHHHHHHHHhccC--cEEEEcCCCh--HHH-HHHHHHHHHHhhCCCceEC
Confidence            88876   4566666666554  9999998742  222 2233556667777777554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=88.50  E-value=3.3  Score=37.19  Aligned_cols=65  Identities=8%  Similarity=0.018  Sum_probs=47.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +..|+.||.++.|.+.-...+.            +.|.+.++++... ..++.++.+|+..++++  .||.|+++..++.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i  103 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP--EFNKVVSNLPYQI  103 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence            4578899999999975433333            5677777766543 34688999999988876  4899999877653

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=88.14  E-value=1.7  Score=37.97  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC-C----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           26 NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp-~----~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +.+.+.|++.....+.  +|+++.+++.+ ++ +    +.+.||+|+.=..-   .. ...+..+.+.|+|||.+++-+.
T Consensus        80 ~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen   80 PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence            5566777776666554  58999998754 22 1    13589999985422   12 5678889999999999998764


Q ss_pred             C
Q 023870           97 L   97 (276)
Q Consensus        97 ~   97 (276)
                      .
T Consensus       157 l  157 (205)
T PF01596_consen  157 L  157 (205)
T ss_dssp             T
T ss_pred             c
Confidence            3

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=87.98  E-value=1.8  Score=40.92  Aligned_cols=86  Identities=14%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCcEEEEccCCCCcH-HHH-----------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            7 QSAVLALSEDKILPV-SAV-----------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         7 g~~vL~v~~~~~~~~-~~v-----------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      |--||+|+.|.++-+ =..           ...|.++|++.+...++  +|.++.+.++++.+| +..|+|++--.-..+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL  256 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYML  256 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhh
Confidence            334688887775421 001           16788888887665543  488899999999886 579999984322222


Q ss_pred             ChH---HHHHHHHHhccCCcEEEE
Q 023870           73 PGD---QLLEEISRVLKPGGTILI   93 (276)
Q Consensus        73 ~~~---~~l~ei~rvLKPgG~l~i   93 (276)
                      -++   +..-...|.|||.|.++=
T Consensus       257 ~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  257 VNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             hhHHHHHHHHHHHhhcCCCCcccC
Confidence            232   233346799999999863

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=87.53  E-value=1.4  Score=36.32  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCC--CCCCceeEEEecccc-----ccCC---h--HHHHHHHHHhccCCc
Q 023870           24 VLNAIRDLGDEAVEQCDP--QIITQASSLSQLP--VESFSIDTVLSISSS-----HELP---G--DQLLEEISRVLKPGG   89 (276)
Q Consensus        24 v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp--~~~~sfD~V~s~~~l-----~~~~---~--~~~l~ei~rvLKPgG   89 (276)
                      +++..++..+++..+.+.  ++.++..+=+++.  ++.+.+|+|+.+...     |.+.   +  -.++..+.+.|+|||
T Consensus         7 IQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG   86 (140)
T PF06962_consen    7 IQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGG   86 (140)
T ss_dssp             S-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCC
Confidence            455666667777766543  4787777666664  233589999887642     2221   1  568899999999999


Q ss_pred             EEEEEecC
Q 023870           90 TILIYKKL   97 (276)
Q Consensus        90 ~l~i~~~~   97 (276)
                      .+.+....
T Consensus        87 ~i~iv~Y~   94 (140)
T PF06962_consen   87 IITIVVYP   94 (140)
T ss_dssp             EEEEEE--
T ss_pred             EEEEEEeC
Confidence            99887643

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=86.69  E-value=3.4  Score=38.21  Aligned_cols=90  Identities=10%  Similarity=-0.042  Sum_probs=59.3

Q ss_pred             CCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCC-CCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPV-ESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~   71 (276)
                      .+.+||++..|.+.-+.            ++.+.|++.|++++...+. ++.++++|+..+.. ..+.||+|+..-.-..
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G  252 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG  252 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence            46789999988864321            2227888888887766665 48999999987543 3457999998744221


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +. ..++ ++...++|++.++++...
T Consensus       253 ~~-~~~~-~~l~~~~~~~ivyvsc~p  276 (315)
T PRK03522        253 IG-KELC-DYLSQMAPRFILYSSCNA  276 (315)
T ss_pred             cc-HHHH-HHHHHcCCCeEEEEECCc
Confidence            21 2333 444557888888877644

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=85.94  E-value=1.5  Score=42.24  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCC-CC---CCCceeEEEec---cc---cccC---Ch-HHHHHHHHHhc
Q 023870           23 AVLNAIRDLGDEAVEQCDP---QIITQASSLSQL-PV---ESFSIDTVLSI---SS---SHEL---PG-DQLLEEISRVL   85 (276)
Q Consensus        23 ~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l-p~---~~~sfD~V~s~---~~---l~~~---~~-~~~l~ei~rvL   85 (276)
                      ++....++.|+++..-.+.   .+.|+++|+-.. ..   ....||+|+.=   ++   -..+   .+ ..++....++|
T Consensus       247 D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL  326 (393)
T COG1092         247 DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL  326 (393)
T ss_pred             eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence            4557778888887765553   378999987433 22   23499999972   11   1112   23 67888999999


Q ss_pred             cCCcEEEEEecCC
Q 023870           86 KPGGTILIYKKLT   98 (276)
Q Consensus        86 KPgG~l~i~~~~~   98 (276)
                      +|||.+++++-..
T Consensus       327 ~pgG~l~~~s~~~  339 (393)
T COG1092         327 APGGTLVTSSCSR  339 (393)
T ss_pred             CCCCEEEEEecCC
Confidence            9999999988664

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.86  E-value=1.7  Score=41.68  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CCeEEEeccCCCC--CCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           41 PQIITQASSLSQL--PVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        41 ~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      .++.++.+++.+.  ..++++||.++.+-.+.|+++   .+.+++|.|.++|||++++......
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            4578888888754  257899999999888889886   7899999999999999999987643

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=85.76  E-value=3.1  Score=35.09  Aligned_cols=42  Identities=29%  Similarity=0.437  Sum_probs=29.7

Q ss_pred             CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           56 ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        56 ~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ....||+|+..-.++.-.. +.+++-+.+.|+|+|.+++....
T Consensus       116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            4568999999877665444 88999999999999997776643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=85.61  E-value=5  Score=35.78  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCcee---EEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID---TVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD---~V~s~~~   68 (276)
                      +..++.||.++.|.+.-...+.            +.|.+.++++... ..++.++.+|+..++++  +||   +|+++..
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP  103 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLP  103 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence            3567899999999875433333            5666766655432 35688899999998876  577   7777766


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEE
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILI   93 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i   93 (276)
                      +|.  ....+.++..  .+++...+
T Consensus       104 y~i--~~~il~~ll~--~~~~~~~~  124 (253)
T TIGR00755       104 YNI--SSPLIFKLLE--KPKFRLAV  124 (253)
T ss_pred             hhh--HHHHHHHHhc--cCCCceEE
Confidence            542  2344444444  45544433

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=84.49  E-value=23  Score=32.23  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             CCCCCcEEEEccCCCCcHH---HHH----------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCC----CCCce
Q 023870            4 GKMQSAVLALSEDKILPVS---AVL----------------NAIRDLGDEAVEQCDPQIITQASSLSQLPV----ESFSI   60 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---~v~----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~----~~~sf   60 (276)
                      +++|.+||.+.-...+.+.   +++                ..++.+|++|     .+|.-+.-|+.. |.    --...
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArh-P~KYRmlVgmV  227 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARH-PAKYRMLVGMV  227 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCC-chheeeeeeeE
Confidence            6899999999877766543   333                4556778776     666666556543 22    12367


Q ss_pred             eEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCCCc--hhHHHHHHHHHHHHHHCCCcchhhhhccc
Q 023870           61 DTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLDAQRIQLKS  130 (276)
Q Consensus        61 D~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~~~~~~~l~~~l~laGF~~v~~~~~~~  130 (276)
                      |+|++-.+   -++  +.+.-...-.||+||-|+++....-..  -.....++.-.+.|+..-|...+.+...|
T Consensus       228 DvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP  298 (317)
T KOG1596|consen  228 DVIFADVA---QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEP  298 (317)
T ss_pred             EEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecccc
Confidence            88877432   123  344445778899999999987654211  11122233333445555555544443333

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=83.71  E-value=1.9  Score=38.85  Aligned_cols=69  Identities=13%  Similarity=0.129  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhhhhCC--CCeEEEeccCCC-CC-CC-----CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           26 NAIRDLGDEAVEQCD--PQIITQASSLSQ-LP-VE-----SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~--~~v~~~~~d~~~-lp-~~-----~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +.+.+.|++.....+  .+|.++.+++.+ |+ +.     .++||+|+.=..-...  ...+..+.+.|+|||.+++-+.
T Consensus       114 ~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y--~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        114 RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNY--INYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHh--HHHHHHHHHhcCCCeEEEEcCC
Confidence            455667777766665  358899898754 23 11     3689999985321111  5678888999999999887543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=82.62  E-value=1.9  Score=40.29  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-------CC--chhHHHHHHHHHHHHHHCCCcchhh
Q 023870           58 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-------SD--KGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~-------~~--~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      ++||+|+..+-+..-++ -+.+..|+.+|||||.++=.-+..       +.  ...+.-+.+.+.+-...-||.....
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke  335 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE  335 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence            46999998765544455 789999999999999986432211       11  0112234557777788899986544

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=82.28  E-value=2.2  Score=43.63  Aligned_cols=69  Identities=19%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             eEEEeccCCC-CCCCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHH
Q 023870           43 IITQASSLSQ-LPVESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL  117 (276)
Q Consensus        43 v~~~~~d~~~-lp~~~~sfD~V~s-~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~l  117 (276)
                      +....+|+.+ ++--...||+|+. -++...-+.   .+++++|+|.++|||+|.-.+..           ..+++.|..
T Consensus       149 l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a-----------~~vr~~l~~  217 (662)
T PRK01747        149 LDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSA-----------GFVRRGLQE  217 (662)
T ss_pred             EEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehH-----------HHHHHHHHH
Confidence            4466777753 3322356999986 333333333   78999999999999999866532           167778999


Q ss_pred             CCCcc
Q 023870          118 AGFLD  122 (276)
Q Consensus       118 aGF~~  122 (276)
                      +||..
T Consensus       218 ~GF~v  222 (662)
T PRK01747        218 AGFTV  222 (662)
T ss_pred             cCCee
Confidence            99974

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=82.00  E-value=7.2  Score=33.99  Aligned_cols=86  Identities=15%  Similarity=0.056  Sum_probs=48.1

Q ss_pred             CCCCCCcEEEEccCCCCc---HHHH-----------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEec
Q 023870            3 TGKMQSAVLALSEDKILP---VSAV-----------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~---~~~v-----------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      .++.|+.|++.-.|.+.=   +...           .+...+..++.+...+  ..+....+|...+.- ...||.|++.
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            467888899887777521   1110           0233344444333333  347888999987755 8899999987


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEE
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~   92 (276)
                      ...+.   ..+|..+.+.+|+||.+.
T Consensus       177 lp~~~---~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  177 LPESS---LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -TSSG---GGGHHHHHHHEEEEEEEE
T ss_pred             ChHHH---HHHHHHHHHHhcCCcEEE
Confidence            64221   357889999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2ld4_A	176	Solution Structure Of The N-Terminal Domain Of Huma		6e-05
2yui_A	182	Solution Structure Of The N-Terminal Domain In Huma		2e-04

>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Anamorsin Length = 176

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 59  SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 114
           S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   
Sbjct: 63  SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 122
Query: 115 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGSS 153
           L L+G ++ + +Q + + P EV S                + GKKP +++GSS
Sbjct: 123 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175

>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human Cytokine-Induced Apoptosis Inhibitor Anamorsin Length = 182

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 2   DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSI 60
           D G      +A+  DK  PV A+   +  L  +A+   + ++ +     L Q   +  S 
Sbjct: 10  DFGISAGQFVAVVWDKSSPVEALKGLVDKL--QALTGNEGRVSVENIKQLLQSAHKESSF 67
Query: 61  DTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLL 116
           D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   L 
Sbjct: 68  DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT 127
Query: 117 LAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGS 152
           L+G ++ + +Q + + P EV S                + GKKP +++GS
Sbjct: 128 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGS 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	7e-14
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	7e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-06
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	9e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	2e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	9e-05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	3e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	6e-04
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	7e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-04

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176

 Score = 67.2 bits (163), Expect = 7e-14
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)

Query: 44  ITQASSLSQLPVESFSIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD- 100
           +     L Q   +  S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  
Sbjct: 48  VENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAV 107

Query: 101 -KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAE--------------VVSFGVKGKK 145
                 K  S L   L L+G ++ + +Q + + P E              ++   + GKK
Sbjct: 108 DNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167

Query: 146 PTWKIGSS 153
           P +++GSS
Sbjct: 168 PNFEVGSS 175

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 30  DLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG 88
           D+   A+++   +  +  +      +   S+D +L  +S H++     ++ E+ R+LK  
Sbjct: 46  DINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDD 105

Query: 89  GTILI--YKKLTSDKGD-VDKAISALEGKLLLAGF 120
           G ++I  ++K  +  G  +   +   +     + F
Sbjct: 106 GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNF 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 28  IRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLK 86
           +    ++  +     +    S  +++P+   ++D +    + HEL    + LEE+ RV K
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134

Query: 87  PGGTILI--YKKLTSDKG-DVDKAISALEGKLLL--AGFLDAQ 124
           P   + I  +KK   DKG   ++  S  E  L+L  AG    +
Sbjct: 135 PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 30  DLGDEAVEQ---------CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEE 80
           DL  + +E          C  ++     S+  LP ++  +D + S  + + +  ++ + E
Sbjct: 76  DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNE 135

Query: 81  ISRVLKPGGTILIY 94
            S+ LK GG I + 
Sbjct: 136 WSKYLKKGGFIAVS 149

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 33  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92
           D  V  CD         ++Q+P+E  S+D  +   S         LEE +RVLKPGG + 
Sbjct: 98  DPRVTVCD---------MAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLK 148

Query: 93  IYKKLTSDKGDVDKAISALEGKLLLAGF 120
           +  +++S   DV   + A+       GF
Sbjct: 149 VA-EVSSRFEDVRTFLRAVT----KLGF 171

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 40  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94
             ++     S+  LP  +  +D + S  + + +  ++ L E  + LK GG + + 
Sbjct: 95  QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 34  EAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGT 90
               + + ++      + +LP +  S+  V S  +   +  +   + ++EI RVLKPGG 
Sbjct: 64  NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123

Query: 91  ILIY 94
             I 
Sbjct: 124 ACIN 127

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 30  DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 86
           +      +Q    PQ+         L +   S+D V+SI + H     ++  +E+ R+++
Sbjct: 63  EPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 87  PGGTILIY 94
            G  +L+ 
Sbjct: 123 DGTIVLLT 130

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISR 83
           +     VE      P +     +++ L         +L+  S   +   +L   L  +  
Sbjct: 70  EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129

Query: 84  VLKPGGTILI 93
            ++ GG +L+
Sbjct: 130 AVEDGGGLLM 139

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 94
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 96  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 108
              V + SIDT++S  + H L  D+    + + S++L  GG I+    + +D+   DK +
Sbjct: 100 SFEVPT-SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTV 158

Query: 109 SALEGK 114
            A + +
Sbjct: 159 EAAKQR 164

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP E+   + +++I+S        + L EI RVLK  G   I
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACI 151

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP++  S D  L +++   +   ++ L+E  R+LK GG +++
Sbjct: 95  NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 137

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 53  LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
           +P+E    D ++S  S            EI R+LK GG   I 
Sbjct: 105 IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG 147

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 48  SSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94
             L    V+   ID + ++  +H    ++        L+  GTI I+
Sbjct: 102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW 148

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 33  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISRVLKPGG 89
            EA       +  +   L     +    D V        +P D+     E +   + PGG
Sbjct: 82  AEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG 140

Query: 90  TILI 93
            +  
Sbjct: 141 VVEF 144

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 52  QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 108
                  + D + S  +   L     ++L ++  + LKP GT+LI     ++K + D   
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEF 172

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 33  DEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGT 90
            EA  +   P +  +  ++  + +E  + + VLS  + H +   D + +++   LK  G+
Sbjct: 81  TEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGS 140

Query: 91  ILI 93
            + 
Sbjct: 141 FIF 143

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            +P+   S+  V+ +   H +P   ++L E  RVLKPGG +L 
Sbjct: 97  AIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE 139

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 35  AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
             +     +    +++  LP E  S D +        L   ++ L+ + +VLKPGGTI +
Sbjct: 81  TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
            LP E  S D V ++ S H +P   + L E++RVL+PGGT+ I 
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 40  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIYKK 96
           + ++    +  S+   E    D V+S  S H L  +   +L +    +LK  G  +    
Sbjct: 91  NLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149

Query: 97  LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127
           +  +   ++     +  + +    L  + I 
Sbjct: 150 VHGETAFIENLNKTIWRQYVENSGLTEEEIA 180

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 21  VSAV---LNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGD- 75
           V A      +I ++      +    + T+   L+ L     +  D +LS      L    
Sbjct: 57  VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY--DFILSTVVLMFLEAKT 114

Query: 76  --QLLEEISRVLKPGGTILIYKKL 97
              L+  + R  KPGG  LI   +
Sbjct: 115 IPGLIANMQRCTKPGGYNLIVAAM 138

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSS-HELPGDQL---LEEIS 82
           DL    ++      P+       LS   +     D ++S  +    L  D     L  I 
Sbjct: 75  DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIH 134

Query: 83  RVLKPGGTILI 93
           R L   G  +I
Sbjct: 135 RALGADGRAVI 145

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLK 86
           D+   A++      PQ+    +S  +LP    S+D ++ I +          EE++RV+K
Sbjct: 116 DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------PCKAEELARVVK 169

Query: 87  PGGTILI 93
           PGG ++ 
Sbjct: 170 PGGWVIT 176

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP    S D +    ++H      + + E++RVLK  G  L+
Sbjct: 80  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 122

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 44  ITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
           I   ++     V   S+D V+S    +       L +EI RVL+ GG +   
Sbjct: 151 IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS 202

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 52  QLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLKPGGTILI 93
            LP  S + + VL++      +   D+   EI RVL P G ++ 
Sbjct: 107 DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 52  QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94
             P +  ++    +  S+  +    L  E SR LK GG  +  
Sbjct: 178 DTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTI 220

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 35  AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTI 91
           +    D          +Q+  E    + +   +  H +P ++   L + +  +L   G +
Sbjct: 104 SYRLLD---GLVPEQAAQIHSEIGDAN-IYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159

Query: 92  LI 93
            +
Sbjct: 160 YL 161

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP    S D VL  ++   +   +++L E  RVL+PGG +++
Sbjct: 88  ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.75
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.37
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.24
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.23
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.2
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.19
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.18
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.16
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.16
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.15
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.14
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.14
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.13
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.12
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.1
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.1
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.09
3ocj_A	305	Putative exported protein; structural genomics, PS	99.09
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.08
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.06
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.03
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.02
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.01
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.0
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.0
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.99
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.98
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.95
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.94
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.94
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.94
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.91
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.91
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.9
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.89
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.89
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.89
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.88
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.88
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.88
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.87
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.87
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.86
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.85
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.85
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.85
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.84
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.84
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.84
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.83
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.82
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.81
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.8
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.79
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.79
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.79
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.78
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.78
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.77
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.73
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.73
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.72
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.72
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.72
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.71
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.71
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.7
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.7
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.69
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.69
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.68
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.66
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.63
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.61
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.6
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.6
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.6
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.58
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.58
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.55
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.52
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.5
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.5
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.5
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.49
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.47
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.47
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.47
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.46
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.46
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.46
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.45
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.45
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.44
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.44
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.4
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.38
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.38
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.36
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.34
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.34
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.33
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.33
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.31
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.3
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.3
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.28
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.28
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.26
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.25
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.25
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.25
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.24
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.24
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.24
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.22
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.22
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.2
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.19
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.19
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.19
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.16
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.15
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.14
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.13
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.13
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.11
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.1
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.09
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.09
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.08
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.07
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.07
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.07
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.06
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.03
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.02
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.02
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.02
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.0
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.99
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.99
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.98
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.98
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.95
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.94
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.94
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.92
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.92
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.91
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.87
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.85
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.85
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.84
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.84
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.84
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.82
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.8
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.8
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.8
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.8
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.79
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.78
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.77
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.76
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.75
2o07_A	304	Spermidine synthase; structural genomics, structur	97.74
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.73
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.71
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.69
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.69
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.68
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.65
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.65
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.63
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.59
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.59
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.57
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.55
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.55
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.5
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.5
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.47
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.45
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.45
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.45
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.44
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.44
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.43
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.43
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.43
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.38
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.37
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.37
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.31
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.29
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.29
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.25
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.25
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.23
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.21
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.2
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.19
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.18
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.16
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.13
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.09
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.05
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.04
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.03
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.0
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.0
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.97
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.92
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.89
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.87
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.83
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	96.77
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.73
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.52
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.42
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.34
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.33
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	95.98
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	95.88
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.77
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.68
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	94.88
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.67
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.66
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	94.65
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.45
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	94.24
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.83
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	93.82
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	93.7
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.19
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.73
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	92.46
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	91.26
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	91.16
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	91.12
3cvo_A	202	Methyltransferase-like protein of unknown functio;	90.74
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	90.41
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	90.36
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	89.92
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	89.54
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	89.19
3ll7_A	410	Putative methyltransferase; methytransferase, stru	86.81
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	86.81
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	85.83
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	85.13
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	84.22
3khk_A	544	Type I restriction-modification system methylation	83.38
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	82.57
3lkd_A	542	Type I restriction-modification system methyltrans	82.46
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	80.99
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	80.76
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	80.58

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.75  E-value=4.9e-18  Score=141.43  Aligned_cols=146  Identities=22%  Similarity=0.314  Sum_probs=109.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCC---CCCceeEEEeccccccC-Ch-HHHH
Q 023870            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV---ESFSIDTVLSISSSHEL-PG-DQLL   78 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~---~~~sfD~V~s~~~l~~~-~~-~~~l   78 (276)
                      ++.|++||+++.+.+.  -++.+.|++.|+++...   .+.+.+++++++++   ++++||+|++.+++||+ ++ ..++
T Consensus        10 ~~~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l   84 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSP--VEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEIL   84 (176)
T ss_dssp             CCTTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHH
T ss_pred             CCCCCEEEEecCCcee--eeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHH
Confidence            7889999999999864  67999999999887532   37899999999988   89999999999999999 66 9999


Q ss_pred             HHHHHhccCCcEEEEEecCCCCch--hHHHHHHHHHHHHHHCCCcchhhhhcccccC--------------CceeEEEEe
Q 023870           79 EEISRVLKPGGTILIYKKLTSDKG--DVDKAISALEGKLLLAGFLDAQRIQLKSVVP--------------AEVVSFGVK  142 (276)
Q Consensus        79 ~ei~rvLKPgG~l~i~~~~~~~~~--~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~--------------~~~~~~~i~  142 (276)
                      ++++|+|||||+|++..+......  ......+.+...|..+||+.+......+..+              +.+..+.+.
T Consensus        85 ~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGfi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  164 (176)
T 2ld4_A           85 AEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQIT  164 (176)
T ss_dssp             HHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTCEEEEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEE
T ss_pred             HHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCCcEeecCcccCCCHHHHHHHHHHhcccCCceEEEEEe
Confidence            999999999999999765321100  0001124677789999994433221111111              123467889


Q ss_pred             eccCCCCcCCcc
Q 023870          143 GKKPTWKIGSSF  154 (276)
Q Consensus       143 akKP~~~~g~~~  154 (276)
                      ++||+|++|||+
T Consensus       165 a~Kp~~~~gs~~  176 (176)
T 2ld4_A          165 GKKPNFEVGSSR  176 (176)
T ss_dssp             EECCCSSCCSCC
T ss_pred             ccCCcccccCCC
Confidence            999999999984

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.37  E-value=5.7e-12  Score=112.41  Aligned_cols=94  Identities=15%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CCCCCCcEEEEccCCCCcHH----------------HHHHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEE
Q 023870            3 TGKMQSAVLALSEDKILPVS----------------AVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~----------------~v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      .+++|.+||.++.|.+.-..                ++.+.|+++|++++...+  .++.++++|+.++|++  .||+|+
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccce
Confidence            36899999999999874321                233899999999876654  3589999999999875  599999


Q ss_pred             eccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++++|++++   ..+|++++|+|||||+|++.+...
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            9999999985   468999999999999999998654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.24  E-value=5.1e-11  Score=104.55  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=78.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||+|+.|.+.-...+            .+.|++.|+++....+. ++.++++|++++|+++++||+|++..++|
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            467899999999986543333            27888988887765553 58999999999999999999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+++ ..+|++++|+|||||+|++.++.
T Consensus       115 ~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          115 HFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             GCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            9998 89999999999999999998754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.23  E-value=7.2e-11  Score=100.54  Aligned_cols=138  Identities=18%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.+.+||.++.|.+.-+..+.               +.|++.++++....+. ++.+..+++..+++++++||+|++..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence            4678899999998875533222               7778888877665554 58999999999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc---hhH--HHHHHHHHHHHHHCCCcchhhhhcccccCCceeEEEE
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK---GDV--DKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGV  141 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~--~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i  141 (276)
                      +++++++ ..++++++|+|||||++++.++.....   ...  .-..+.+...+..+||..++.....+      ..+.+
T Consensus       115 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~------~~~~~  188 (219)
T 3dh0_A          115 TFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK------YCFGV  188 (219)
T ss_dssp             CGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT------TEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC------ceEEE
Confidence            9999987 899999999999999999998764311   000  00124677789999999776544322      23455


Q ss_pred             eeccCC
Q 023870          142 KGKKPT  147 (276)
Q Consensus       142 ~akKP~  147 (276)
                      .++||.
T Consensus       189 ~~~k~~  194 (219)
T 3dh0_A          189 YAMIVK  194 (219)
T ss_dssp             EEECC-
T ss_pred             EEEecc
Confidence            666654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.20  E-value=2.6e-10  Score=98.22  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ...+.+||.++.|.+.-...+.              +.|++.|+++....+ ++.++++|+..++++ ++||+|++..++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~l  119 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFE-EKYDMVVSALSI  119 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCCC-CCceEEEEeCcc
Confidence            4578999999999875433222              778888888765544 799999999999987 899999999999


Q ss_pred             ccCChH---HHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPGD---QLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~~---~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      |++++.   .++++++|+|||||+|++.++..
T Consensus       120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          120 HHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999872   59999999999999999998654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.19  E-value=1.1e-10  Score=101.72  Aligned_cols=121  Identities=14%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||+|+.|.+..+..+.             +.|++.|++++...+.  ++.++++|+.++++ +++||+|++..+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~  112 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA  112 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence            5788999999999875433222             7888888887766554  59999999999988 889999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc---hhHHH-----------HHHHHHHHHHHCCCcchhh
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK-----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~~~-----------~~~~l~~~l~laGF~~v~~  125 (276)
                      +|++++ ..+|++++|+|||||+|++.++.....   ..+..           ....+...+..+||..++.
T Consensus       113 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  184 (256)
T 1nkv_A          113 TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM  184 (256)
T ss_dssp             GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred             hHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence            999987 899999999999999999987532110   11110           1235667788899987543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.18  E-value=5.6e-11  Score=105.82  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      ..+.+||+|+.|.+.-...+.            +.|++.|++     ..++.+++++++++|+++++||+|++..++||+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-----~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~  112 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-----HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF  112 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----cCCceeehhhhhhhcccCCcccEEEEeeehhHh
Confidence            456789999999886554443            777776644     257999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEecCCC
Q 023870           73 PGDQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        73 ~~~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      +.+.++++++|+|||||+|++..+...
T Consensus       113 ~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          113 DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            888999999999999999999887643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.16  E-value=3.6e-10  Score=95.44  Aligned_cols=121  Identities=15%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+ +||.++.|.+..+..+.             +.|++.|+++....+.  ++.++++++.++++++++||+|++..++
T Consensus        43 ~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  121 (219)
T 3dlc_A           43 TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSV  121 (219)
T ss_dssp             CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCG
T ss_pred             CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchH
Confidence            345 89999998875433222             7788888887766553  5899999999999999999999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--hhH--------------------HHHHHHHHHHHHHCCCcchhhh
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--GDV--------------------DKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~--------------------~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ||+++ ..++++++|+|||||++++.+......  ..+                    ....+.+...+..+||..++..
T Consensus       122 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  201 (219)
T 3dlc_A          122 FFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII  201 (219)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             hhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence            99987 899999999999999999987543210  000                    0012466778999999877654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.16  E-value=4.5e-10  Score=97.88  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=93.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.|.+||.++.|.+..+..+.             +.|++.|+++....+..  +.++++|+..+|+++++||+|++..
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence            35788999999999875533332             77888888877665543  8999999999999999999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecC--CC-CchhHHHHH----------HHHHHHHHHCCCcchhh
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKL--TS-DKGDVDKAI----------SALEGKLLLAGFLDAQR  125 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~--~~-~~~~~~~~~----------~~l~~~l~laGF~~v~~  125 (276)
                      ++|++....++++++|+|||||+|++.++.  .. ........|          ..+...+..+||..+..
T Consensus       123 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (257)
T 3f4k_A          123 AIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH  193 (257)
T ss_dssp             CSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred             hHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            999995589999999999999999999853  11 111122222          35567788889887653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.15  E-value=1.7e-10  Score=100.62  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.|.+||.++.|.+..+..+.             +.|++.|+++.... .++.++++|+..+|+++++||+|++..++|
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  131 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAIL  131 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEEEEeHHHHHH
Confidence            5678899999999875433222             67788887765444 578999999999999999999999999999


Q ss_pred             cC--Ch-HHHHHHHHHhccCCcEEEEEecCCCCchh----HHH----------HHHHHHHHHHHCCCcchhh
Q 023870           71 EL--PG-DQLLEEISRVLKPGGTILIYKKLTSDKGD----VDK----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        71 ~~--~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~----~~~----------~~~~l~~~l~laGF~~v~~  125 (276)
                      |+  .+ ..++++++|+|||||++++.++.......    +..          ..+.+...+..+||..++.
T Consensus       132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  203 (266)
T 3ujc_A          132 ALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS  203 (266)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             hcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence            99  55 88999999999999999999865432111    111          1245667788899976543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.14  E-value=4.1e-10  Score=99.20  Aligned_cols=122  Identities=15%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||.|+.|.+..+..+.             +.|++.|+++....+.  ++.++++|+.++|+++++||+|++..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence            5789999999999875433332             7888888887766654  499999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCC--C-CchhHHHHH----------HHHHHHHHHCCCcchhh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLT--S-DKGDVDKAI----------SALEGKLLLAGFLDAQR  125 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~--~-~~~~~~~~~----------~~l~~~l~laGF~~v~~  125 (276)
                      ++++....++++++|+|||||++++.+...  . ........|          ..+...+..+||..++.
T Consensus       124 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (267)
T 3kkz_A          124 IYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT  193 (267)
T ss_dssp             GGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred             ceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            999955899999999999999999988541  1 111222222          35667788899987644

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.14  E-value=3.3e-10  Score=98.44  Aligned_cols=96  Identities=17%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .++.+.+||.++.|.+.-...+            .+.|++.++++....+ .++.+++++++.+|+++++||+|++..++
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence            3578899999999986543322            2778888877765544 35899999999999999999999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ||+++ ..++++++|+|||||+|++.++..
T Consensus        98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           98 HHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             hhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            99988 899999999999999999987653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.13  E-value=2e-10  Score=102.69  Aligned_cols=123  Identities=19%  Similarity=0.220  Sum_probs=93.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.+.+||.|+.|.+..+..+.             +.|++.|+++....+  .++.++.+++..+|+++++||+|++..
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence            45788999999999875433332             678888887765544  358999999999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc---hhHHH-----------HHHHHHHHHHHCCCcchhh
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK-----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~~~-----------~~~~l~~~l~laGF~~v~~  125 (276)
                      +++|+++ ..++++++|+|||||+|++.++.....   ..+..           ....+...+..+||..++.
T Consensus       159 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  231 (297)
T 2o57_A          159 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  231 (297)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            9999988 899999999999999999998653211   11111           1234566788889986543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.12  E-value=5.1e-10  Score=98.52  Aligned_cols=95  Identities=23%  Similarity=0.338  Sum_probs=80.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||.|+.|.+..+..+.             +.|++.++++....+.  ++.++.+|+..+|+++++||+|++..+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  138 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES  138 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence            4688999999999875533332             6788888887766553  489999999999999999999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++|+++ ..++++++|+|||||++++.++..
T Consensus       139 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          139 LHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             TTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             hhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            999987 899999999999999999998653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.10  E-value=8.1e-10  Score=94.39  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC------CeEEEeccCCCCCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP------QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~------~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      ++.+.+||.++.|.+.-+..+.            +.|++.++++....+.      ++.+..+++..+++++++||+|++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            5788999999999875433332            7788888887665554      578999999999999999999999


Q ss_pred             ccccccCCh-H---HHHHHHHHhccCCcEEEEEecCC
Q 023870           66 ISSSHELPG-D---QLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~l~~~~~-~---~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..+++++++ .   .++++++|+|||||+|++.++..
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            999999976 4   89999999999999999998754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.10  E-value=9.3e-10  Score=95.90  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=78.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .++.+.+||.++.|.+.-...+.            +.|++.++++......++.+++++++.+++++++||+|++..++|
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            35778999999999876544333            788888888763334569999999999999999999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEE
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~   94 (276)
                      |+++ ..++++++|+|||||+|++.
T Consensus       116 ~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          116 LVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9987 88999999999999999987

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.09  E-value=4e-10  Score=97.23  Aligned_cols=121  Identities=22%  Similarity=0.175  Sum_probs=92.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+.+||.++.|.+.-+..+.            +.|++.++++.  ...++.++++++.++++++++||+|++..++||
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            5688999999999875433332            77888877664  335689999999999999999999999999999


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecCCCCchh---HH-----------HHHHHHHHHHHHCCCcchhhh
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKLTSDKGD---VD-----------KAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~---~~-----------~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +++ ..++++++|+|||||+|++.++.......   ..           -....+...+..+||..++..
T Consensus       129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            987 89999999999999999999865431100   00           012366778899999876543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.09  E-value=1.9e-10  Score=103.83  Aligned_cols=138  Identities=17%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.+.+||.|+.|.+..+..+               .+.|++.|+++....+..  +.++++|+.+++++ ++||+|+++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence            577889999998876433222               288899998887766554  89999999999988 999999999


Q ss_pred             cccccCCh-H---HHHHHHHHhccCCcEEEEEecCCCCc----h-----hHH----------------------HHHHHH
Q 023870           67 SSSHELPG-D---QLLEEISRVLKPGGTILIYKKLTSDK----G-----DVD----------------------KAISAL  111 (276)
Q Consensus        67 ~~l~~~~~-~---~~l~ei~rvLKPgG~l~i~~~~~~~~----~-----~~~----------------------~~~~~l  111 (276)
                      .++||+++ .   .++++++|+|||||+|++.++.....    .     ...                      ...+.+
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT  274 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence            99999876 3   37999999999999999998653210    0     000                      013467


Q ss_pred             HHHHHHCCCcchhhhhcccccCCceeEEEEeeccCC
Q 023870          112 EGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPT  147 (276)
Q Consensus       112 ~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~akKP~  147 (276)
                      ...+..+||..++......    . ....+.++||+
T Consensus       275 ~~~l~~aGF~~v~~~~~~~----~-~~~~v~a~Kpa  305 (305)
T 3ocj_A          275 RAQLEEAGFTDLRFEDDRA----R-LFPTVIARKPA  305 (305)
T ss_dssp             HHHHHHTTCEEEEEECCTT----S-SSCEEEEECCC
T ss_pred             HHHHHHCCCEEEEEEcccC----c-eeeEEEEecCC
Confidence            7889999999766543111    1 12345677773

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.08  E-value=1.4e-09  Score=92.45  Aligned_cols=90  Identities=21%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      +.+.+||.++.|.+.-+..+.            +.|++.++++..   .++.++.+++..++++ ++||+|++..++|++
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL  119 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-SCCSEEEEESCGGGS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-CCeEEEEECcchhcC
Confidence            468899999999875443332            778888877653   4578999999999988 999999999999999


Q ss_pred             Ch-HH--HHHHHHHhccCCcEEEEEecCC
Q 023870           73 PG-DQ--LLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        73 ~~-~~--~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++ ..  ++++++|+|||||++++.++..
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          120 TDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            87 44  9999999999999999998653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.08  E-value=6.5e-10  Score=90.99  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+.+||.++.|.+.-+..+.            +.|++.++++    ..++.+..++   +++++++||+|++..++++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK----FDSVITLSDP---KEIPDNSVDFILFANSFHD   87 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH----CTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence            4677899999999876544333            7777877766    3468888888   7888999999999999999


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecCCCCc--h---hHHHHHHHHHHHHHHCCCcchhhhhc
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKLTSDK--G---DVDKAISALEGKLLLAGFLDAQRIQL  128 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~---~~~~~~~~l~~~l~laGF~~v~~~~~  128 (276)
                      +++ ..++++++|+|||||++++.++.....  .   ...-..+.+...+.  ||..++....
T Consensus        88 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~  148 (170)
T 3i9f_A           88 MDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP  148 (170)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred             ccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence            987 899999999999999999998764311  0   00001235555555  9998766543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.08  E-value=6.2e-10  Score=104.01  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=93.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhC-----C----CCeEEEeccCCCC------
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQC-----D----PQIITQASSLSQL------   53 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~-----~----~~v~~~~~d~~~l------   53 (276)
                      +..|.+||.++.|.+..+..+               .+.|++.|++++...     +    .++.+++++++.+      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            568899999999987532222               267888887765432     2    5799999999988      


Q ss_pred             CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--hhH---HH----------HHHHHHHHHHH
Q 023870           54 PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--GDV---DK----------AISALEGKLLL  117 (276)
Q Consensus        54 p~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~---~~----------~~~~l~~~l~l  117 (276)
                      ++++++||+|+++.+++++++ ..+|++++|+|||||+|++.++.....  ...   ..          .++.+...|..
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  240 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE  240 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence            999999999999999999988 899999999999999999987653211  011   00          12567788999


Q ss_pred             CCCcchhhh
Q 023870          118 AGFLDAQRI  126 (276)
Q Consensus       118 aGF~~v~~~  126 (276)
                      +||..++..
T Consensus       241 aGF~~v~~~  249 (383)
T 4fsd_A          241 AGFRDVRLV  249 (383)
T ss_dssp             TTCCCEEEE
T ss_pred             CCCceEEEE
Confidence            999876543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.07  E-value=8.3e-10  Score=94.91  Aligned_cols=90  Identities=14%  Similarity=0.074  Sum_probs=74.9

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      ..+.+||.|+.|.+.-+..+            .+.|++.|+++...   ++.+++++++++ +++++||+|++..++||+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~  116 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI  116 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence            46789999999886543333            27888888877533   689999999888 578899999999999999


Q ss_pred             Ch-HHHHHHHH-HhccCCcEEEEEecCC
Q 023870           73 PG-DQLLEEIS-RVLKPGGTILIYKKLT   98 (276)
Q Consensus        73 ~~-~~~l~ei~-rvLKPgG~l~i~~~~~   98 (276)
                      ++ ..+|++++ |+|||||+|++.++..
T Consensus       117 ~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          117 DDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             cCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            87 89999999 9999999999998764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.07  E-value=4.3e-10  Score=98.04  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      .+.+||.++.|.+.-+..+.             +.|++.|+++..  ..++.++++++..+++++++||+|++..+++++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  121 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI  121 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence            68899999999874433222             778888877654  456899999999999999999999999999999


Q ss_pred             Ch-HHHHHHHHHhccCCcEEEEEec
Q 023870           73 PG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        73 ~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++ ..++++++|+|||||+|++..+
T Consensus       122 ~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          122 ASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            87 8999999999999999999854

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.06  E-value=1.2e-09  Score=98.89  Aligned_cols=122  Identities=11%  Similarity=0.100  Sum_probs=93.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||+++.|.+.-...+.             +.|++.|++++...+.  ++.++.+|+.++|+++++||+|++..+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  194 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES  194 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence            5788999999999875432222             7788888887776654  499999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCch----h----HHH-------HHHHHHHHHHHCCCcchhh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKG----D----VDK-------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~----~----~~~-------~~~~l~~~l~laGF~~v~~  125 (276)
                      +++++...++++++|+|||||+|++.++......    .    +..       ..+.+...+..+||..++.
T Consensus       195 l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~  266 (312)
T 3vc1_A          195 TMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI  266 (312)
T ss_dssp             GGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence            9999658999999999999999999986543211    1    111       1245667788888876543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.05  E-value=7.4e-10  Score=93.94  Aligned_cols=141  Identities=18%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .++.+.+||.++.|.+.-+..+.            +.|++.++++.     .+.+..+++..++ ++++||+|++..+++
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~fD~v~~~~~l~  113 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDAYDAVWAHACLL  113 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSCEEEEEECSCGG
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCcEEEEEecCchh
Confidence            46778999999999875433332            77888887764     4567789999988 789999999999999


Q ss_pred             cCC--h-HHHHHHHHHhccCCcEEEEEecCCCCch--hH-----HHHHHHHHHHHHHCC-CcchhhhhcccccCCc--ee
Q 023870           71 ELP--G-DQLLEEISRVLKPGGTILIYKKLTSDKG--DV-----DKAISALEGKLLLAG-FLDAQRIQLKSVVPAE--VV  137 (276)
Q Consensus        71 ~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~--~~-----~~~~~~l~~~l~laG-F~~v~~~~~~~~~~~~--~~  137 (276)
                      +++  + ..++++++|+|||||+|++..+......  ..     .-..+.+...+..+| |..++........+..  ..
T Consensus       114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~  193 (211)
T 3e23_A          114 HVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQ  193 (211)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEE
T ss_pred             hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCce
Confidence            998  4 7899999999999999999876532110  00     001246777899999 9977654322211111  13


Q ss_pred             EEEEeeccCCCC
Q 023870          138 SFGVKGKKPTWK  149 (276)
Q Consensus       138 ~~~i~akKP~~~  149 (276)
                      .+.+..++|+++
T Consensus       194 wl~~~~~~~~~~  205 (211)
T 3e23_A          194 FLHVSVRKPELE  205 (211)
T ss_dssp             EEEEEEECCCC-
T ss_pred             EEEEEEecCccc
Confidence            445566666554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.05  E-value=8.5e-10  Score=97.39  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||.|+.|.+.-...+.              +.|++.++++....+. ++.+..+|+..+++++++||+|++..+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            5788999999998875433222              6778888877766554 589999999999999999999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++++ ..++++++|+|||||+|++.++.
T Consensus       115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          115 LEHLQSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            999987 89999999999999999998854

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.04  E-value=9.5e-10  Score=92.59  Aligned_cols=117  Identities=13%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             CCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-
Q 023870            7 QSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-   73 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~-   73 (276)
                      +.+||.++.|.+.-+..+.            +.|++.++++.    .++.++++++.++++++++||+|++..+++|++ 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP  117 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----CCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence            7899999999875433332            77888877762    468899999999999999999999999999986 


Q ss_pred             -h-HHHHHHHHHhccCCcEEEEEecCCCCchhH--------HHHHHHHHHHHHHCCCcchhhhh
Q 023870           74 -G-DQLLEEISRVLKPGGTILIYKKLTSDKGDV--------DKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        74 -~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~--------~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                       + ..++++++|+|||||+|++..+.......+        ....+.+...+..+||..++...
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence             4 889999999999999999998764321100        00124677789999999776543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.03  E-value=2e-09  Score=92.54  Aligned_cols=91  Identities=12%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc-cccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~-~l~~   71 (276)
                      ..+.+||.++.|.+.-+..+.            +.|++.++++....+.++.++++++..++++ ++||+|++.. ++||
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccc
Confidence            367899999998876544332            7888888887766666789999999999887 8999999998 9999


Q ss_pred             C---Ch-HHHHHHHHHhccCCcEEEEEec
Q 023870           72 L---PG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        72 ~---~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +   .+ ..++++++|+|||||+|++..+
T Consensus       115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            8   34 7899999999999999998644

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.02  E-value=7.7e-10  Score=95.92  Aligned_cols=117  Identities=15%  Similarity=-0.002  Sum_probs=87.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCC--CCCCCceeEEEeccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISS   68 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l--p~~~~sfD~V~s~~~   68 (276)
                      .++.+.+||.|+.|.+.-+..+.            +.|++.++++       +.++.+++.++  ++++++||+|++..+
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHF  110 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence            35788999999999875433332            5566665543       67888888775  889999999999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHH-----------HHHHHHHHHHHCCCcchhhh
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK-----------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~-----------~~~~l~~~l~laGF~~v~~~  126 (276)
                      ++|+++   ..++++++|+|||||+|++..+.......+..           ..+.+...+..+||..+...
T Consensus       111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  182 (240)
T 3dli_A          111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE  182 (240)
T ss_dssp             GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred             hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence            999983   78999999999999999999887543221111           12466777888999866544

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=1.7e-09  Score=95.90  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+.+||.|+.|.+.-...+.            +.|++.++++.    .++.+.++|++.+|+ +++||+|++..++||
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFRV-DKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCC-SSCEEEEEEESCGGG
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCc-CCCcCEEEEcchhhh
Confidence            4578899999999875433332            67888887764    457889999999998 579999999999999


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecCCCC
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKLTSD  100 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~  100 (276)
                      +++ ..++++++|+|||||+|++..+....
T Consensus       130 ~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~  159 (279)
T 3ccf_A          130 VKEPEAAIASIHQALKSGGRFVAEFGGKGN  159 (279)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             CcCHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence            988 88999999999999999998876543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.00  E-value=7.1e-10  Score=96.83  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=86.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCC--CCCCCceeEEEe----
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLS----   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l--p~~~~sfD~V~s----   65 (276)
                      ..|.+||.|+.|.+..+..+.             +.|+++|+++....+..+.++.++++.+  ++++++||.|+.    
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~  138 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence            678999999999986544333             8899999998887777888888888654  688999999974    


Q ss_pred             -ccccccCCh-HHHHHHHHHhccCCcEEEEEecCC------CCchhHHH-HHHHHHHHHHHCCCcchh
Q 023870           66 -ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT------SDKGDVDK-AISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        66 -~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~------~~~~~~~~-~~~~l~~~l~laGF~~v~  124 (276)
                       ...++++++ ..++++++|+|||||+|++.+...      ........ ..+.....|..+||....
T Consensus       139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             cccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence             334556666 889999999999999998875321      00011111 122445668889998654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.00  E-value=6.6e-10  Score=94.72  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=72.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhh-------------CCCCeEEEeccCCCCCCCC-
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQ-------------CDPQIITQASSLSQLPVES-   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~-------------~~~~v~~~~~d~~~lp~~~-   57 (276)
                      ++.|.+||+++.|.+..+..+.            +.|++.|+++...             ...++.++++|+.++++++ 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            4678999999999876544332            8899998877542             1356899999999999876 


Q ss_pred             CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 023870           58 FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      ++||+|++..++|+++.   ..++++++|+|||||++++.
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            89999999888998875   56899999999999994443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.99  E-value=2.7e-09  Score=95.23  Aligned_cols=93  Identities=8%  Similarity=0.036  Sum_probs=78.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||.|+.|.+.-+..+               .+.|++.|+++....+.++.+.++|+.+++++ ++||+|++..+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~   98 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF   98 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence            567899999999886443222               27788888887766666899999999999984 69999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++++ ..++++++|+|||||+|++.++.
T Consensus        99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           99 LLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            999988 89999999999999999999876

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.98  E-value=6.9e-10  Score=96.38  Aligned_cols=121  Identities=9%  Similarity=0.074  Sum_probs=90.2

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +.+.+||.|+.|.+.-+..+             .+.|++.|+++.... .++.++++++..+++++++||+|++..++||
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  170 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence            46889999999886543222             267888888776443 4688999999999999999999999999999


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCCCCc--------hhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~--------~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +++   ..++++++|+|||||+|++.++.....        .......+.+...+..+||..++..
T Consensus       171 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  236 (254)
T 1xtp_A          171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence            953   789999999999999999998632100        0000112467777899999876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.95  E-value=2.7e-09  Score=89.89  Aligned_cols=95  Identities=22%  Similarity=0.300  Sum_probs=78.1

Q ss_pred             CCCCCcEEEEccCCCCc-HHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILP-VSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~-~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ...+.+||.++.|.+.. ...+            .+.|++.|+++....+.++.++++|+.++++++++||+|++..+++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  100 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF  100 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence            45688999999987754 2222            1788888888776556678899999999999999999999998889


Q ss_pred             cCC--h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           71 ELP--G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        71 ~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      |++  + ..++++++|+|||||++++.++..
T Consensus       101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A          101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            884  4 889999999999999999988653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.94  E-value=1.3e-08  Score=86.03  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+.+||.++.|.+.-+..+.            +.|++.+++.   ...++.++++|+.++ +++++||+|++..++||
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~  119 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAH  119 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTSC-CCSSCEEEEEEESCGGG
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc---CCCCeEEEecccccC-CCCCceeEEEEechhhc
Confidence            5678899999999875433332            6777777661   225689999999988 88999999999999999


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++   ..++++++|+|||||+|++.++..
T Consensus       120 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            987   789999999999999999998754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.94  E-value=3e-09  Score=94.48  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=77.3

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCC-CCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLP-VESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~   70 (276)
                      .+.+||.|+.|.+.-+..+.            +.|++.|+++....+.  ++.++++++..++ +.+++||+|++..+++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            46799999999875443332            7888888887766554  4899999999988 8899999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+++ ..++++++|+|||||+|++..+.
T Consensus       148 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            9988 89999999999999999998864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.94  E-value=2.7e-09  Score=92.53  Aligned_cols=121  Identities=13%  Similarity=0.084  Sum_probs=90.6

Q ss_pred             CCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhC-CCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~-~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .+.+||.|+.|.+.-+..             +.+.|++.|+++.... ..++.++.+++..+++++++||+|++..++++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            588999999888643322             1278888888876554 34588999999999998889999999999999


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCCCC-------chhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLTSD-------KGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~-------~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +++   ..++++++|+|||||+|++.++....       ........+.+...+..+||..++..
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            986   37999999999999999998753211       00000023467778899999876644

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.91  E-value=2.1e-09  Score=92.49  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+.-+..+.             +.|++.++++...  .++.++++++..+++++++||+|++..++|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  119 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQDSFDLAYSSLALHY  119 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCCCCceEEEEeccccc
Confidence            368899999998864332222             6778878776533  3588999999999998999999999999999


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +++ ..++++++++|||||+|++.++
T Consensus       120 ~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          120 VEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            987 8999999999999999999874

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.91  E-value=1.8e-08  Score=90.28  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC----CCeEEEeccCCCCCCCCCceeEEEe-ccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLS-ISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~----~~v~~~~~d~~~lp~~~~sfD~V~s-~~~   68 (276)
                      .+.+||.|+.|.+.-+..+.            +.|++.|+++....+    .++.++++|+.++++ +++||+|++ ...
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~  160 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS  160 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence            34599999999876544333            889999988877665    569999999999998 789998885 466


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +|+++.   ..+|++++|+|||||+|++..+..
T Consensus       161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          161 INELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             HTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            777773   789999999999999999988764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.90  E-value=1.1e-08  Score=87.59  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             CCCcEEEEccCCCCcHHHH--------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HH
Q 023870            6 MQSAVLALSEDKILPVSAV--------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQ   76 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~   76 (276)
                      ++.+||.++.|.+..+..+        .+.|++.++++      ++.++.+++..+++++++||+|++..+++++++ ..
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~  120 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER  120 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence            3889999999987654433        27788877665      468889999999999999999999999999987 88


Q ss_pred             HHHHHHHhccCCcEEEEEecCCCCchh-HH---------------HHHHHHHHHHHHCCCcchhh
Q 023870           77 LLEEISRVLKPGGTILIYKKLTSDKGD-VD---------------KAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        77 ~l~ei~rvLKPgG~l~i~~~~~~~~~~-~~---------------~~~~~l~~~l~laGF~~v~~  125 (276)
                      ++++++++|||||+|++.++....... ..               -..+.+...+..+||..++.
T Consensus       121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~  185 (219)
T 1vlm_A          121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  185 (219)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence            999999999999999999875432100 00               01246667788888876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.89  E-value=9e-09  Score=91.36  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||.|+.|.+..+..+.             +.|++.|+++....+.  ++.+..+|+..+|   ++||+|++..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~  138 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA  138 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence            5678999999999875433333             6788888887765543  5889999998776   79999999999


Q ss_pred             cccCC--h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHELP--G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++|++  + ..++++++|+|||||+|++.++..
T Consensus       139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             hhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            99984  4 889999999999999999988653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.89  E-value=3.5e-09  Score=91.18  Aligned_cols=91  Identities=12%  Similarity=0.179  Sum_probs=73.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-----------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc-cccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-----------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-----------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~-~l~~   71 (276)
                      ++.+.+||.++.|.+.-+..+           .+.|++.|+++....+.++.++++++.+++++ ++||+|++.. +++|
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNY  109 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhh
Confidence            567889999999886543322           27888888887766666789999999998876 8999999976 7888


Q ss_pred             CC---h-HHHHHHHHHhccCCcEEEEEe
Q 023870           72 LP---G-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        72 ~~---~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +.   + ..++++++++|||||+|++..
T Consensus       110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          110 LQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            73   3 679999999999999999853

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=2.3e-09  Score=94.37  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=85.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      +.+.+||.|+.|.+.-...+.            +.|++.++++     .++.++++|++++|+++++||+|++..++||+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  107 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-----PQVEWFTGYAENLALPDKSVDGVISILAIHHF  107 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-----TTEEEECCCTTSCCSCTTCBSEEEEESCGGGC
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-----cCCEEEECchhhCCCCCCCEeEEEEcchHhhc
Confidence            678999999999875433332            5566655443     27899999999999999999999999999999


Q ss_pred             Ch-HHHHHHHHHhccCCcEEEEEecCCCCc-----hh-HHH----------HHHHHHHHHHHCCCcchhh
Q 023870           73 PG-DQLLEEISRVLKPGGTILIYKKLTSDK-----GD-VDK----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~-----~~-~~~----------~~~~l~~~l~laGF~~v~~  125 (276)
                      ++ ..++++++|+|| ||++++.++.....     .. +..          ....+. .|..+||..++.
T Consensus       108 ~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~  175 (261)
T 3ege_A          108 SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEA  175 (261)
T ss_dssp             SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEE
T ss_pred             cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeE
Confidence            88 899999999999 99998888764211     01 010          123456 788899986654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.88  E-value=2.1e-09  Score=95.07  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             CCCCcEEEEccCCCCcH-------------HHHHHHHHHHHHHhhhhCC------------------------------C
Q 023870            5 KMQSAVLALSEDKILPV-------------SAVLNAIRDLGDEAVEQCD------------------------------P   41 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~-------------~~v~~~m~~~A~~~~~~~~------------------------------~   41 (276)
                      ..|.+||+|+.|.+.-.             -++.+.|++.|++++....                              .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            46788999998885321             1233788888776543211                              1


Q ss_pred             CeE-EEeccCCC-CCCC---CCceeEEEeccccccC----Ch-HHHHHHHHHhccCCcEEEEEecCCCCch---h-----
Q 023870           42 QII-TQASSLSQ-LPVE---SFSIDTVLSISSSHEL----PG-DQLLEEISRVLKPGGTILIYKKLTSDKG---D-----  103 (276)
Q Consensus        42 ~v~-~~~~d~~~-lp~~---~~sfD~V~s~~~l~~~----~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~---~-----  103 (276)
                      .+. ++++|+.. .|++   .++||+|++++++|++    ++ ..++++++|+|||||+|++.........   .     
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~  213 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  213 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence            233 78899887 3543   6799999999999885    23 6899999999999999999975432110   0     


Q ss_pred             HHHHHHHHHHHHHHCCCcchhhh
Q 023870          104 VDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus       104 ~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ..-..+.+...|..+||..++..
T Consensus       214 ~~~~~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          214 VALEKGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cccCHHHHHHHHHHCCCEEEEEe
Confidence            00012367778999999866543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.88  E-value=7.1e-09  Score=91.77  Aligned_cols=91  Identities=12%  Similarity=-0.018  Sum_probs=73.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhh------------------CCCCeEEEeccCCCCC
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQ------------------CDPQIITQASSLSQLP   54 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~------------------~~~~v~~~~~d~~~lp   54 (276)
                      +.+.+||+++.|.+..+..+.            +.|++.|+++...                  .+.++.++++|+.+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            578899999999987644333            8889988765431                  2356999999999999


Q ss_pred             CCC-CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           55 VES-FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        55 ~~~-~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +++ ++||+|++..++++++.   ..++++++|+|||||+|++.+
T Consensus       147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            875 89999999888888874   579999999999999997554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.88  E-value=7.7e-09  Score=87.62  Aligned_cols=116  Identities=19%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCC---CCCCC-ceeEEEeccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQL---PVESF-SIDTVLSISS   68 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~~-sfD~V~s~~~   68 (276)
                      ..+.+||.++.|.+.-+..+.            +.|++.++++     ..+.+..+++..+   ++..+ +||+|++..+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~  125 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANFA  125 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECch
Confidence            356899999999875443332            7788888766     4456777777766   65554 5999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchh-----------H-------------HHHHHHHHHHHHHCCCcch
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGD-----------V-------------DKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~-----------~-------------~~~~~~l~~~l~laGF~~v  123 (276)
                      +| ..+ ..++++++|+|||||+|++.++.......           +             ....+.+...|..+||..+
T Consensus       126 l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  204 (227)
T 3e8s_A          126 LL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV  204 (227)
T ss_dssp             CC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred             hh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence            88 555 89999999999999999999874321100           0             0023577788999999976


Q ss_pred             hhh
Q 023870          124 QRI  126 (276)
Q Consensus       124 ~~~  126 (276)
                      +..
T Consensus       205 ~~~  207 (227)
T 3e8s_A          205 SLQ  207 (227)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.87  E-value=4.1e-09  Score=91.32  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=84.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCC--CCCCCceeEEEe-ccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLS-ISS   68 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l--p~~~~sfD~V~s-~~~   68 (276)
                      +.+.+||.|+.|.+.....+.             +.|++.|+++....+.++.+++++++++  ++++++||+|++ .+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~  138 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence            578899999999875543332             7899999888776667799999999988  899999999999 544


Q ss_pred             c--ccCC--h-HHHHHHHHHhccCCcEEEEEecCCC------CchhHHHHH-HHHHHHHHHCCCcc
Q 023870           69 S--HELP--G-DQLLEEISRVLKPGGTILIYKKLTS------DKGDVDKAI-SALEGKLLLAGFLD  122 (276)
Q Consensus        69 l--~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~~------~~~~~~~~~-~~l~~~l~laGF~~  122 (276)
                      +  +.++  . ..++++++|+|||||+|++.+....      ........+ +.....|..+||..
T Consensus       139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            3  2222  2 4679999999999999998765310      001111111 23345688899985

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.87  E-value=1.8e-08  Score=89.33  Aligned_cols=94  Identities=18%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCC-CCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPV-ESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~-~~~sfD~V~s~~   67 (276)
                      ++.+.+||.++.|.+..+..+.             +.|++.|+++....+.  ++.++++|+..+++ ++++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            4688999999999875433222             7788888887765543  48899999999998 688999999999


Q ss_pred             cccc--CC--h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHE--LP--G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~--~~--~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++|+  .+  + ..++++++|+|||||+|++..+.
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            8887  22  3 78999999999999999998754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.86  E-value=3.1e-08  Score=81.72  Aligned_cols=113  Identities=13%  Similarity=0.036  Sum_probs=85.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~   70 (276)
                      ++.+.+||.++.|.+.....+.            +.|++.++++.    .++.++.+++..+++++++||+|++. ..++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~  119 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVMG  119 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCCCceeEEEECCcHHh
Confidence            5678999999998865433332            66777777654    34788999999999988999999998 6777


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      +++.   ..++++++++|||||++++........ .    ...+...+..+||..++.
T Consensus       120 ~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~-~----~~~~~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          120 FLAEDGREPALANIHRALGADGRAVIGFGAGRGW-V----FGDFLEVAERVGLELENA  172 (195)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC-C----HHHHHHHHHHHTEEEEEE
T ss_pred             hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc-C----HHHHHHHHHHcCCEEeee
Confidence            7753   789999999999999999987653211 1    125667788899986544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.85  E-value=1.3e-08  Score=89.13  Aligned_cols=87  Identities=11%  Similarity=0.212  Sum_probs=71.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc-ccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~-~l~   70 (276)
                      ++.+.+||.|+.|.+.-...+            .+.|++.|+++..    ++.++++|+.++++ +++||+|++.. +++
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~  122 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL-GRRFSAVTCMFSSIG  122 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence            356789999999987543332            2788888877642    68899999999988 78999999997 999


Q ss_pred             cCCh----HHHHHHHHHhccCCcEEEEEe
Q 023870           71 ELPG----DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        71 ~~~~----~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      |+++    ..++++++++|||||+|++..
T Consensus       123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          123 HLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             GSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9863    678999999999999999964

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.85  E-value=2.5e-08  Score=89.43  Aligned_cols=93  Identities=8%  Similarity=0.119  Sum_probs=76.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      +++|.+||.|+.|.+..+..+.             +.|++.|+++....+.  ++.++.+|+.++   +++||+|++..+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~  146 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA  146 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence            5789999999999875533332             7788888888776654  488999999876   789999999999


Q ss_pred             cccCCh----------HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           69 SHELPG----------DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        69 l~~~~~----------~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      +||+++          ..++++++|+|||||+|++.++...
T Consensus       147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            999943          6899999999999999999987643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.85  E-value=9.2e-09  Score=92.17  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=76.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC---CCCeEEEeccCCCCCCCC------Cce
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC---DPQIITQASSLSQLPVES------FSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~---~~~v~~~~~d~~~lp~~~------~sf   60 (276)
                      +.+.+||.|+.|.+..+..+.               +.|++.|+++....   ..++.+++++++++++++      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            578899999999875543333               77888888877655   567999999999999888      899


Q ss_pred             eEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        61 D~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      |+|++..++||+....++++++|+|||||.|++..+
T Consensus       115 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~  150 (299)
T 3g5t_A          115 DMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGY  150 (299)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999999339999999999999999998544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.84  E-value=2.2e-08  Score=90.37  Aligned_cols=93  Identities=9%  Similarity=0.125  Sum_probs=75.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||+|+.|.+..+..+.             +.|++.|+++....+.  .+.+..+|+.++|   ++||+|++..+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~  164 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA  164 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence            4678999999999875433222             6788888887766553  4889999998875   78999999999


Q ss_pred             cccCC--h-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           69 SHELP--G-DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        69 l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      +++++  + ..++++++|+|||||+|++.++...
T Consensus       165 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          165 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            99994  4 8899999999999999999987653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.84  E-value=2.6e-08  Score=92.29  Aligned_cols=121  Identities=10%  Similarity=0.037  Sum_probs=90.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC--CCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQL--PVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l--p~~~~sfD~V~s~~   67 (276)
                      ..+.+||+|+.|.+..+..+.             +.|++.|+++....+.  ++.++.+|+.+.  |++ ++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            356789999999876544333             6788888887766553  599999999875  576 7899999999


Q ss_pred             ccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHH----------------------HHHHHHHHHHHHCCCcc
Q 023870           68 SSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVD----------------------KAISALEGKLLLAGFLD  122 (276)
Q Consensus        68 ~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~----------------------~~~~~l~~~l~laGF~~  122 (276)
                      .+|++++   ..+|++++|+|||||+|++.+..........                      .+.+++...+..+||..
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~  336 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV  336 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence            9999986   4789999999999999999886532111000                      01345667788889987


Q ss_pred             hhhh
Q 023870          123 AQRI  126 (276)
Q Consensus       123 v~~~  126 (276)
                      ++..
T Consensus       337 v~~~  340 (363)
T 3dp7_A          337 EEIQ  340 (363)
T ss_dssp             SCCC
T ss_pred             EEEE
Confidence            7654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.84  E-value=8.5e-10  Score=98.87  Aligned_cols=94  Identities=13%  Similarity=-0.014  Sum_probs=70.7

Q ss_pred             CCCCcEEEEccCCCCcH--------------------HHHHHHHHHHHHHhhhhC-CC-C--eEEEeccCCCCC------
Q 023870            5 KMQSAVLALSEDKILPV--------------------SAVLNAIRDLGDEAVEQC-DP-Q--IITQASSLSQLP------   54 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~--------------------~~v~~~m~~~A~~~~~~~-~~-~--v~~~~~d~~~lp------   54 (276)
                      ..+.+||.|+.|.+.-.                    -+..+.|++.|++++... +. +  +.+..++++.++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            46789999999887210                    011267888888776542 22 2  445566666554      


Q ss_pred             CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           55 VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++++||+|++.+++||+++ ..+|++++|+|||||+|++.....
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            67899999999999999998 889999999999999999987553

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.83  E-value=6.7e-09  Score=89.53  Aligned_cols=117  Identities=14%  Similarity=0.103  Sum_probs=86.8

Q ss_pred             CcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            8 SAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+||.++.|.+..+..+            .+.|++.|+++....+  .++.++++|+.+++ ++.+||+|++..++++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  146 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE  146 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence            48999999887543322            2888888888765432  45899999999987 456999999999999998


Q ss_pred             --h-HHHHHHHHHhccCCcEEEEEecCCCCc--h-hHHHHHHHHHHHHHHCCCcchhh
Q 023870           74 --G-DQLLEEISRVLKPGGTILIYKKLTSDK--G-DVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        74 --~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~-~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                        + ..++++++|+|||||+|++.++.....  . ......+.+...+..+||..+..
T Consensus       147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          147 PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence              5 889999999999999999988754211  0 01011236677788999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.82  E-value=2.9e-08  Score=84.48  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=74.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC------CeEEEeccCCCCCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP------QIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~------~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      ..+.+||.++.|.+.-+..+.              +.|++.|+++....+.      ++.++++|+..+++++++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            457899999998875433332              7888888877654332      68999999999998899999999


Q ss_pred             eccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 023870           65 SISSSHELPG---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        65 s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +..+++++++   ..++++++|+|||||.+++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            9999999985   4899999999999997776654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.81  E-value=1.7e-08  Score=87.78  Aligned_cols=90  Identities=10%  Similarity=0.049  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.+.+||.++.|.+.-...+.              +.|++.++++    ..++.++.+|++.++ ++++||+|++..++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l  105 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK-PAQKADLLYANAVF  105 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC-CSSCEEEEEEESCG
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC-ccCCcCEEEEeCch
Confidence            4578899999998865433222              5677777665    246889999999998 78899999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ||+++ ..++++++|+|||||+|++.++..
T Consensus       106 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A          106 QWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             GGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             hhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            99987 899999999999999999998753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.80  E-value=5.3e-09  Score=88.49  Aligned_cols=92  Identities=20%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             CCCCCcEEEEccCCCCcHH----------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            4 GKMQSAVLALSEDKILPVS----------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~----------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      +..+.+||.++.|.+....          ++.+.|++.++++.    .++.++++++.++|+++++||+|++..++||++
T Consensus        34 ~~~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  109 (211)
T 2gs9_A           34 LPPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFDVVLLFTTLEFVE  109 (211)
T ss_dssp             CCCCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred             cCCCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence            3478899999888753221          23377888887764    457889999999999999999999999999998


Q ss_pred             h-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           74 G-DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        74 ~-~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      + ..++++++|+|||||++++.++...
T Consensus       110 ~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          110 DVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            7 8999999999999999999987653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.79  E-value=2.3e-08  Score=83.23  Aligned_cols=91  Identities=19%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+..+..+.            +.|++.++++....+. ++.+..+|+.++++ +++||+|++..++|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~  109 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF  109 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence            467799999998865433332            7788888777655444 58999999999988 889999999999999


Q ss_pred             CC--h-HHHHHHHHHhccCCcEEEEEec
Q 023870           72 LP--G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        72 ~~--~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++  + ..++++++|+|||||++++.++
T Consensus       110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          110 LEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             SCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            87  4 7899999999999999888764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.79  E-value=3.7e-08  Score=83.83  Aligned_cols=92  Identities=11%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC------CeEEEeccCCCCCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP------QIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~------~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      ..+.+||.++.|.+.-+..+.              +.|++.|+++....+.      ++.++++|+..++++.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            467899999998875433222              7888888887654443      68999999998888889999999


Q ss_pred             eccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 023870           65 SISSSHELPG---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        65 s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +..+++|+++   ..++++++|+|||||.|++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            9999999985   6899999999999998877654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.79  E-value=2.3e-08  Score=85.04  Aligned_cols=94  Identities=22%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc--
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS--   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l--   69 (276)
                      ++.+.+||.++.|.+.-...+.            +.|++.|+++....+.++.++.+|+.++++++++||+|++..++  
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence            4568899999999875433222            77888888877666667899999999999988999999998884  


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++..+ ..++++++++|||||+|++.++.
T Consensus       116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            44434 78999999999999999998764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.78  E-value=1.3e-08  Score=92.52  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC-------CeEEEeccC------CCC--CCC
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP-------QIITQASSL------SQL--PVE   56 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~-------~v~~~~~d~------~~l--p~~   56 (276)
                      +.|.+||+|+.|.+..+..+             .+.|++.|+++....+.       .+.|.++++      +++  +++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            45889999999987543322             28899999888765443       256777877      333  367


Q ss_pred             CCceeEEEeccccccC-C--h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           57 SFSIDTVLSISSSHEL-P--G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~-~--~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++||+|++.+++|++ +  . ..++++++|+|||||+|++.++.
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            7899999999998874 2  2 78999999999999999998865

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.78  E-value=1.7e-08  Score=87.96  Aligned_cols=122  Identities=15%  Similarity=0.138  Sum_probs=84.5

Q ss_pred             CCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCC------------------------------
Q 023870            5 KMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDP------------------------------   41 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~------------------------------   41 (276)
                      ..|.+||.++.|.+....             ++.+.|++.++++....+.                              
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            456789999888764321             2237888888776644321                              


Q ss_pred             Ce-EEEeccCCCCC-CCC---CceeEEEeccccc----cCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--------hh
Q 023870           42 QI-ITQASSLSQLP-VES---FSIDTVLSISSSH----ELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--------GD  103 (276)
Q Consensus        42 ~v-~~~~~d~~~lp-~~~---~sfD~V~s~~~l~----~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--------~~  103 (276)
                      .+ .+.++++.+++ +++   ++||+|++..++|    ++++ ..++++++|+|||||+|++.++.....        ..
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  214 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS  214 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence            16 88999998764 466   8999999999988    5445 789999999999999999987543210        00


Q ss_pred             HHHHHHHHHHHHHHCCCcchhhh
Q 023870          104 VDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus       104 ~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ..-..+.+...+..+||..++..
T Consensus       215 ~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          215 LPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCHHHHHHHHHHCCCEEEEEE
Confidence            00012366777899999876543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.77  E-value=1.9e-08  Score=84.94  Aligned_cols=132  Identities=12%  Similarity=0.004  Sum_probs=90.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.+.+||.++.|.+..+..+.             +.|++.|+++....+.. +.+.++|+...  .+++||+|++...+
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~  135 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA  135 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence            5678999999999875433222             78888888877666554 88999998764  46899999998766


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhcccccCCceeEEEEeeccCCCC
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWK  149 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~akKP~~~  149 (276)
                      +++  ..++++++++|||||++++.++...   .    ...+...+..+||..+.....     +.. ...+..++|..+
T Consensus       136 ~~~--~~~l~~~~~~L~~gG~l~~~~~~~~---~----~~~~~~~~~~~Gf~~~~~~~~-----~~w-~~~~~~~~~~~~  200 (205)
T 3grz_A          136 EIL--LDLIPQLDSHLNEDGQVIFSGIDYL---Q----LPKIEQALAENSFQIDLKMRA-----GRW-IGLAISRKHEGH  200 (205)
T ss_dssp             HHH--HHHGGGSGGGEEEEEEEEEEEEEGG---G----HHHHHHHHHHTTEEEEEEEEE-----TTE-EEEEEEECC---
T ss_pred             HHH--HHHHHHHHHhcCCCCEEEEEecCcc---c----HHHHHHHHHHcCCceEEeecc-----CCE-EEEEEecccccc
Confidence            653  6789999999999999999876532   1    125667788999987654432     122 223566677666


Q ss_pred             cCC
Q 023870          150 IGS  152 (276)
Q Consensus       150 ~g~  152 (276)
                      .++
T Consensus       201 ~~~  203 (205)
T 3grz_A          201 HHH  203 (205)
T ss_dssp             ---
T ss_pred             ccc
Confidence            554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.77  E-value=2.5e-08  Score=84.61  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=74.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      ..+.+||.++.|.+.-...+.            +.|++.++++.... .++.++++|+.+++ ++++||+|++..++||+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~  127 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQFS-TAELFDLIVVAEVLYYL  127 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTCC-CSCCEEEEEEESCGGGS
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhCC-CCCCccEEEEccHHHhC
Confidence            456789999999875433332            78888888876543 37899999999988 68899999999999999


Q ss_pred             Ch----HHHHHHHHHhccCCcEEEEEecC
Q 023870           73 PG----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        73 ~~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++    ..++++++|+|||||+|++.++.
T Consensus       128 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          128 EDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            85    46799999999999999998764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.76  E-value=2.9e-08  Score=83.28  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+ +||.++.|.+..+..+.            +.|++.|+++....+.++.+.++|+..+++++++||+|++... |+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~~  105 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC-HL  105 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC-CC
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh-cC
Confidence            5667 99999988865433322            7788888887766666889999999999999999999998542 33


Q ss_pred             C-Ch-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           72 L-PG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        72 ~-~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      . .+ ..++++++++|||||+|++.++..
T Consensus       106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A          106 PSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            2 23 789999999999999999998754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.73  E-value=4.8e-08  Score=82.09  Aligned_cols=94  Identities=23%  Similarity=0.291  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||.++.|.+.-...+.             +.|++.++++... ..++.+.++|+..+++++++||+|++..+++
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            4778999999998865433222             6778888776543 3468899999999999999999999977765


Q ss_pred             cCC---------------h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           71 ELP---------------G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        71 ~~~---------------~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++.               + ..++++++|+|||||++++.++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            543               3 789999999999999999999863

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.73  E-value=7.9e-08  Score=81.47  Aligned_cols=87  Identities=17%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCC--CCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQ--LPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~--lp~~~~sfD~V~s~~~l~   70 (276)
                      +.+.+||.++.|.+.....+.            +.|++.++++.      ..+..+++..  +++++++||+|++..+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~  104 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFDCVIFGDVLE  104 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence            478899999998865433332            56666666542      2678888876  678889999999999999


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+++ ..++++++++|||||++++..+.
T Consensus       105 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          105 HLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             GSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             hcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9987 88999999999999999998765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.72  E-value=1.3e-07  Score=79.82  Aligned_cols=111  Identities=9%  Similarity=0.024  Sum_probs=82.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||+++.|.+..+..+.              +.|++.|++++...+. ++.++.+++........+||+|++...
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  117 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS  117 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence            5678999999999864422222              7788888887665553 588999999665444478999999876


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      .+  ....++++++++|||||+|++.....       .....+...+..+|| +++
T Consensus       118 ~~--~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~l~~~g~-~~~  163 (204)
T 3e05_A          118 GG--MLEEIIDAVDRRLKSEGVIVLNAVTL-------DTLTKAVEFLEDHGY-MVE  163 (204)
T ss_dssp             TT--CHHHHHHHHHHHCCTTCEEEEEECBH-------HHHHHHHHHHHHTTC-EEE
T ss_pred             Cc--CHHHHHHHHHHhcCCCeEEEEEeccc-------ccHHHHHHHHHHCCC-cee
Confidence            65  23789999999999999999987642       123356677889999 544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.72  E-value=5.1e-08  Score=88.38  Aligned_cols=121  Identities=21%  Similarity=0.179  Sum_probs=88.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHHH-------------HHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVLN-------------AIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~~-------------~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+.+||.++.|.+.-+..+..             .|++.|+++....+.  ++.++.+|+.+.+++.+ ||+|++.+.+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence            5678999999988754333332             577778777655443  48999999988887765 9999999999


Q ss_pred             ccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc--hh-HHH----------------HHHHHHHHHHHCCCcchhhh
Q 023870           70 HELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--GD-VDK----------------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~-~~~----------------~~~~l~~~l~laGF~~v~~~  126 (276)
                      |++++   ..++++++++|||||++++.++.....  .. ...                ..+.+...+..+||..++..
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~  321 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH  321 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence            99964   689999999999999999998764311  00 000                12456667888899876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.72  E-value=2.1e-08  Score=91.07  Aligned_cols=90  Identities=8%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             CCCCCCcEEEEccCCCC-cHH-------------HHHHHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKIL-PVS-------------AVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~-~~~-------------~v~~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+|+.|.+. .+.             ++.+.|+++|++++...+ .++.++++|+.++|  +++||+|++..
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECC
Confidence            57899999999999742 111             122889999998876655 46999999998876  78999999754


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .   .++ ..++++++|+|||||+|++.+..
T Consensus       197 ~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          197 L---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             T---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             C---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            3   355 78999999999999999998854

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.72  E-value=4.8e-08  Score=88.96  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+.+||+|+.|.+.-+..+.             +.|++.|+++....+  .++.++.+|+. .+++. .||+|++.+++
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl  245 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL  245 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence            456789999999875543333             668888887766554  45999999997 46665 89999999999


Q ss_pred             ccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc-----hhHH---------HHHHHHHHHHHHCCCcchhhh
Q 023870           70 HELPG---DQLLEEISRVLKPGGTILIYKKLTSDK-----GDVD---------KAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~-----~~~~---------~~~~~l~~~l~laGF~~v~~~  126 (276)
                      |++++   ..+|++++++|||||+|++.+......     .++.         .+.+++...+..+||..++..
T Consensus       246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  319 (332)
T 3i53_A          246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH  319 (332)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            99987   689999999999999999998753211     0110         012456677888898876654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.71  E-value=1.2e-07  Score=83.34  Aligned_cols=95  Identities=7%  Similarity=-0.052  Sum_probs=73.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHHH---------------------HHHHHHHhhhhCCC--CeEEEecc---CCCCCCCC
Q 023870            4 GKMQSAVLALSEDKILPVSAVLNA---------------------IRDLGDEAVEQCDP--QIITQASS---LSQLPVES   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~~---------------------m~~~A~~~~~~~~~--~v~~~~~d---~~~lp~~~   57 (276)
                      ++.|.+||.|+.|.+.-+..+...                     |++.|+++....+.  ++.++.+|   ...+|+++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            578999999999987554433322                     67778777765543  58999998   56778889


Q ss_pred             CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           58 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++||+|++..++||+++ ..+++.+.++++|||++++.++..
T Consensus       121 ~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             CCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             CCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            99999999999999987 556666666666799999998764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.71  E-value=1.9e-07  Score=79.93  Aligned_cols=114  Identities=16%  Similarity=0.185  Sum_probs=82.7

Q ss_pred             CCCCCCcEEEEccC-CCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCC-CCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSED-KILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~-~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~l-p~~~~sfD~V~s~~   67 (276)
                      .++.|.+||.++.| .+.....+             .+.|++.|++++...+.++.++++|+..+ ++++++||+|+++.
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            45789999999999 65432211             17788888888777777889999997543 56678999999986


Q ss_pred             ccccCCh--------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           68 SSHELPG--------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        68 ~l~~~~~--------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      .+++...                    ..++++++++|||||+|++..+..   .   .....+...+..+||..
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~---~~~~~~~~~l~~~g~~~  200 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK---E---KLLNVIKERGIKLGYSV  200 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC---H---HHHHHHHHHHHHTTCEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc---H---hHHHHHHHHHHHcCCce
Confidence            6554332                    678999999999999999976542   1   11236667788899953

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.70  E-value=1.3e-07  Score=82.11  Aligned_cols=112  Identities=12%  Similarity=0.042  Sum_probs=83.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCC---CCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVE---SFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~---~~sfD~V~s~   66 (276)
                      +.+.+||+++.|.+.....+.              +.|++.|++++...+. ++.++++++++++++   +++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            578899999999986533222              7888888887766554 599999999888764   6799999986


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      .    +.+ ..++++++++|||||+|++..... .    ......+...+..+||..++.
T Consensus       149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~-~----~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          149 A----VARLSVLSELCLPLVKKNGLFVALKAAS-A----EEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             C----CSCHHHHHHHHGGGEEEEEEEEEEECC--C----HHHHHHHHHHHHHTTEEEEEE
T ss_pred             c----cCCHHHHHHHHHHhcCCCCEEEEEeCCC-c----hHHHHHHHHHHHHcCCeEeEE
Confidence            5    234 789999999999999999875331 1    112235666788899976543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.70  E-value=1e-07  Score=83.72  Aligned_cols=124  Identities=13%  Similarity=0.055  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEccCCCCc---HHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCC---CCCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILP---VSAVL------------NAIRDLGDEAVEQCDPQIITQASSLS---QLPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~---~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~---~lp~~~~sfD~V~s   65 (276)
                      +++|++||.++.|.+.-   +..++            +.|++.+++++... .++..+.++..   ..++..+++|+|++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-cCeeEEEEeccCccccccccceEEEEEE
Confidence            78999999999999754   22232            78888887765443 45777777764   45677889999987


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--hhHHHHHHHHHHHHHHCCCcchhhhhccc
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLDAQRIQLKS  130 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~~~~~~~l~~~l~laGF~~v~~~~~~~  130 (276)
                      ....  ..+ ..++.+++|+|||||++++........  .+.....+.....|..+||..++.....|
T Consensus       154 d~~~--~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          154 DVAQ--PEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             CCCC--TTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             eccC--ChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence            5432  234 789999999999999999876443110  11112233455678899998776654433

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.69  E-value=1.9e-08  Score=89.63  Aligned_cols=121  Identities=15%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             CCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhC-----------------C--------------C
Q 023870            6 MQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQC-----------------D--------------P   41 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~-----------------~--------------~   41 (276)
                      .|.+||.|+.|.+....             ++.+.|++.|++++...                 +              .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            57889999888764210             22378888877754321                 1              0


Q ss_pred             CeEEEeccCCC-CCC-----CCCceeEEEecccccc----CCh-HHHHHHHHHhccCCcEEEEEecCCCCch--------
Q 023870           42 QIITQASSLSQ-LPV-----ESFSIDTVLSISSSHE----LPG-DQLLEEISRVLKPGGTILIYKKLTSDKG--------  102 (276)
Q Consensus        42 ~v~~~~~d~~~-lp~-----~~~sfD~V~s~~~l~~----~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~--------  102 (276)
                      .+.++.+|+.+ +|+     ++++||+|++++++||    +++ ..+|++++|+|||||+|++.........        
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~  230 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  230 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence            14567778887 664     4467999999999998    555 8899999999999999999753321100        


Q ss_pred             hHHHHHHHHHHHHHHCCCcchhhh
Q 023870          103 DVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus       103 ~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ...-..+.+...|..+||..+...
T Consensus       231 ~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          231 VVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             eccCCHHHHHHHHHHcCCeEEEee
Confidence            000012367778899999876543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.69  E-value=6.2e-08  Score=88.74  Aligned_cols=133  Identities=18%  Similarity=0.244  Sum_probs=93.2

Q ss_pred             CCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCC-CCCCceeEEEeccccc
Q 023870            7 QSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLP-VESFSIDTVLSISSSH   70 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~   70 (276)
                      +.+||.|+.|.+.-+..+.             +.|++.++++....+.  ++.++.+|+...+ +....||+|++...+|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh  259 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLH  259 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccc
Confidence            7899999998875443333             4467777776655443  4999999998876 2456699999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCCCCc--hhH-H----------------HHHHHHHHHHHHCCCcchhhhhc
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--GDV-D----------------KAISALEGKLLLAGFLDAQRIQL  128 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~-~----------------~~~~~l~~~l~laGF~~v~~~~~  128 (276)
                      ++++   ..+|++++++|||||+|++.+......  ... .                ...+.+...+..+||..++.. .
T Consensus       260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~-~  338 (352)
T 3mcz_A          260 YFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS-I  338 (352)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE-E
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec-c
Confidence            9986   689999999999999999988643210  000 0                012456677899999877632 1


Q ss_pred             ccccCCceeEEEEeeccCC
Q 023870          129 KSVVPAEVVSFGVKGKKPT  147 (276)
Q Consensus       129 ~~~~~~~~~~~~i~akKP~  147 (276)
                           .  ....+.++||+
T Consensus       339 -----g--~~~l~~a~kp~  350 (352)
T 3mcz_A          339 -----G--RYTLLIGQRSS  350 (352)
T ss_dssp             -----T--TEEEEEEECCC
T ss_pred             -----C--ceEEEEEecCC
Confidence                 1  12346778874

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.68  E-value=7.4e-08  Score=85.48  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=75.9

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+.+||.++.|.+..+..+.            +.|++.|+++....+.++.++++|+.++++ +++||+|++..++||++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~  198 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN  198 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence            67899999999875433332            788888888877777789999999999887 88999999999999986


Q ss_pred             h---HHHHHHHHHhccCCcEEEEEec
Q 023870           74 G---DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        74 ~---~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .   ..++++++++|||||.+++...
T Consensus       199 ~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          199 RERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4   5899999999999999877654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.66  E-value=1.4e-07  Score=87.41  Aligned_cols=121  Identities=14%  Similarity=0.193  Sum_probs=88.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||+|+.|.+.-+..+.             +.|++.|+++....+  .++.++.+|+. .+++. .||+|++.++
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  277 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV  277 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence            3567889999998875443333             567888887766554  35999999998 56766 8999999999


Q ss_pred             cccCChH---HHHHHHHHhccCCcEEEEEecCCCCch-h------HH---------HHHHHHHHHHHHCCCcchhhh
Q 023870           69 SHELPGD---QLLEEISRVLKPGGTILIYKKLTSDKG-D------VD---------KAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 l~~~~~~---~~l~ei~rvLKPgG~l~i~~~~~~~~~-~------~~---------~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +|++++.   .+|++++++|||||+|++.+....... .      +.         .+.+++...+..+||..++..
T Consensus       278 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          278 LHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            9999973   699999999999999999886543211 0      00         012355666788888876654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.66  E-value=1.3e-07  Score=80.99  Aligned_cols=87  Identities=14%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEe-cccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS-ISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s-~~~l~~   71 (276)
                      ..+.+||.++.|.+..+..+.            +.|++.|+++.    .++.++.+|+.++++ +++||+|++ ..+++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~  113 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY  113 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----TTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence            568899999999875433332            67788777663    357899999999887 789999996 447888


Q ss_pred             CC---h-HHHHHHHHHhccCCcEEEEEec
Q 023870           72 LP---G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        72 ~~---~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++   + ..++++++++|||||+|++.++
T Consensus       114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          114 LKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             CCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            74   2 6899999999999999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.65  E-value=2.5e-07  Score=85.41  Aligned_cols=136  Identities=20%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +...+|++|+.|.+.-+..+.             +.+++.|+++..... .+|+++.+|+...|++  .+|+|+....+|
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh  255 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLH  255 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecc
Confidence            456789999999875544443             678888877665433 4599999999776655  579999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCCCC--chhH-HH---------------HHHHHHHHHHHCCCcchhhhhcc
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLTSD--KGDV-DK---------------AISALEGKLLLAGFLDAQRIQLK  129 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~--~~~~-~~---------------~~~~l~~~l~laGF~~v~~~~~~  129 (276)
                      .|++   ..+|++++++|+|||+|+|.+.....  ..+. ..               +.+++...+..+||..++.....
T Consensus       256 ~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~  335 (353)
T 4a6d_A          256 DWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTG  335 (353)
T ss_dssp             GSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCS
T ss_pred             cCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcC
Confidence            9987   46899999999999999999864321  1111 00               13456677999999987755321


Q ss_pred             cccCCceeEEEEeeccCCC
Q 023870          130 SVVPAEVVSFGVKGKKPTW  148 (276)
Q Consensus       130 ~~~~~~~~~~~i~akKP~~  148 (276)
                           +... .|.|+|.+.
T Consensus       336 -----~~~~-~i~ArKgt~  348 (353)
T 4a6d_A          336 -----AIYD-AILARKGTH  348 (353)
T ss_dssp             -----SSCE-EEEEECCCC
T ss_pred             -----CceE-EEEEEecCc
Confidence                 1122 367887654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.63  E-value=3.5e-07  Score=77.85  Aligned_cols=112  Identities=15%  Similarity=0.029  Sum_probs=82.5

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~   68 (276)
                      .+..||.++.|.+.-+..+.              +.|++.|++++...+. ++.++++|+..++  +++++||+|++++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            47889999999875432222              7788888887766554 6899999999887  88889999999876


Q ss_pred             cccCC---------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           69 SHELP---------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        69 l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ..|..         ...++.+++++|||||.|++.....    ..   .+.+...+..+||..+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~---~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR----GL---FEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH----HH---HHHHHHHHHHHTCEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH----HH---HHHHHHHHHHCCCeeee
Confidence            55432         1579999999999999999986431    11   23455567778987543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.61  E-value=1.7e-08  Score=94.77  Aligned_cols=117  Identities=9%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCe---EEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQI---ITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v---~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||.|+.|.+.-+..+.            +.|++.|+++    +...   .+...+++.+++++++||+|++..+
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT  180 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence            4578899999999876655443            6777777665    2221   1334566677888999999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCC--------------CchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTS--------------DKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--------------~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +||+++ ..++++++|+|||||+|++..+...              +..-.  ..+.+...+..+||..++..
T Consensus       181 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~ll~~aGf~~~~~~  251 (416)
T 4e2x_A          181 LCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLF--SATSVQGMAQRCGFELVDVQ  251 (416)
T ss_dssp             GGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEEC--CHHHHHHHHHHTTEEEEEEE
T ss_pred             HHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcC--CHHHHHHHHHHcCCEEEEEE
Confidence            999988 8999999999999999999876410              00000  12367778999999876544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.61  E-value=2.7e-07  Score=85.03  Aligned_cols=122  Identities=14%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||.|+.|.+.-+..+.             +.|++.|+++....+.  ++.++.+|+.+ +++. .||+|++..+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  257 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV  257 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence            4567899999998875433222             6788888887765554  59999999865 4544 3999999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEec--CC-CCch-hHHH---------------HHHHHHHHHHHCCCcchhhh
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKK--LT-SDKG-DVDK---------------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~--~~-~~~~-~~~~---------------~~~~l~~~l~laGF~~v~~~  126 (276)
                      +|++++   ..++++++++|||||+|++.++  .. .... ....               ..+.+...+..+||..++..
T Consensus       258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~  337 (374)
T 1qzz_A          258 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER  337 (374)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence            999987   3899999999999999999887  32 1100 0000               12355667888999876654


Q ss_pred             h
Q 023870          127 Q  127 (276)
Q Consensus       127 ~  127 (276)
                      .
T Consensus       338 ~  338 (374)
T 1qzz_A          338 T  338 (374)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.60  E-value=1.5e-07  Score=77.83  Aligned_cols=96  Identities=11%  Similarity=0.001  Sum_probs=70.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCC-CCeEEEeccCCCCC-CCCCceeEEEeccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCD-PQIITQASSLSQLP-VESFSIDTVLSISS   68 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp-~~~~sfD~V~s~~~   68 (276)
                      .++.|.+||+++.|.+.-...+            .+.|++.|+++....+ .++.+++++++.++ +.+++||+|++...
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~   98 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG   98 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence            4678999999999987543322            2889999988876655 45888888887764 55789999987643


Q ss_pred             c-cc-------CC-h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 S-HE-------LP-G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l-~~-------~~-~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      . ++       .+ . ..++++++|+|||||+|++..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            2 21       11 2 578899999999999999988753

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.60  E-value=1.8e-07  Score=84.28  Aligned_cols=93  Identities=16%  Similarity=0.030  Sum_probs=72.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhC--------CCCeEEEeccCCCCC----CC--C
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQC--------DPQIITQASSLSQLP----VE--S   57 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~--------~~~v~~~~~d~~~lp----~~--~   57 (276)
                      +.+.+||.++.|.+.-+..+.             +.|++.|+++....        ..++.++++|++.++    ++  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            478899999998876543332             67888887765432        235889999999886    64  4


Q ss_pred             CceeEEEeccccccC-C---h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           58 FSIDTVLSISSSHEL-P---G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~-~---~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++||+|++..++||+ .   + ..++++++|+|||||.|++..+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            599999999999997 3   2 68999999999999999999876

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.60  E-value=1.1e-07  Score=82.31  Aligned_cols=93  Identities=8%  Similarity=0.034  Sum_probs=75.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-----CceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-----~sfD~V~s~   66 (276)
                      ++.+.+||.++.|.+..+..+.            +.|++.|+++..  ..++.++++|+.++++..     ..||+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCccEEEEc
Confidence            5788999999999875543332            788888887752  236899999999876543     349999999


Q ss_pred             cccccCC--h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 SSSHELP--G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .++|+++  + ..++++++|+|||||+|++.++..
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9999998  4 789999999999999999998864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.58  E-value=4.2e-07  Score=83.61  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||+|+.|.+.-+..+.             +.|++.|+++....+.  ++.++.+|+.+.+++..  |+|++...
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~v  265 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRI  265 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEech
Confidence            4567899999998875443333             4577888777665443  49999999998887654  99999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++++   ..+|++++++|||||+|++.++.
T Consensus       266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             hccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            999986   77899999999999999998854

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.58  E-value=9.6e-08  Score=85.72  Aligned_cols=55  Identities=20%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             CeEEEeccCCCCC-----CCCCceeEEEeccccccCC------h-HHHHHHHHHhccCCcEEEEEec
Q 023870           42 QIITQASSLSQLP-----VESFSIDTVLSISSSHELP------G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        42 ~v~~~~~d~~~lp-----~~~~sfD~V~s~~~l~~~~------~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++.+.++|+...+     +..++||+|++..+++|++      . ..++++++++|||||+|++...
T Consensus       155 ~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            5899999987654     6788999999999988874      3 7899999999999999999754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.58  E-value=3.3e-07  Score=84.05  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=86.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||.|+.|.+.-+..+.             +.|++.|+++....+.  ++.++.+|+.+ +++. .||+|++...
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  258 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV  258 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence            3567899999998875433332             5678888877665544  59999999875 4554 4999999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecC-C-CCch-hHHH---------------HHHHHHHHHHHCCCcchhhhh
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKL-T-SDKG-DVDK---------------AISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~-~-~~~~-~~~~---------------~~~~l~~~l~laGF~~v~~~~  127 (276)
                      +|++++   ..++++++++|||||+|++.++. . .... ....               ..+.+...+..+||..++...
T Consensus       259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  338 (360)
T 1tw3_A          259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ  338 (360)
T ss_dssp             GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence            999987   37999999999999999999876 2 1100 0100               124566678888998765443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.57  E-value=1.2e-07  Score=87.18  Aligned_cols=118  Identities=13%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh--hCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~--~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.+.+||+|+.|.+..+..+.             +.+..  +++..  ....++.++.+|+. .+++  +||+|++..+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v  256 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI  256 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence            4567899999999876544343             22222  22221  12345899999996 4555  8999999999


Q ss_pred             cccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc-hh-HH---------------HHHHHHHHHHHHCCCcchhhh
Q 023870           69 SHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK-GD-VD---------------KAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~-~~-~~---------------~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +|++++   ..+|++++|+|||||+|++.+...... .. ..               ...+++...+..+||..++..
T Consensus       257 lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  334 (348)
T 3lst_A          257 LHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV  334 (348)
T ss_dssp             GGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence            999987   489999999999999999998643211 00 00               012456667888888876554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.56  E-value=6.3e-07  Score=73.67  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCC---eEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQ---IITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~---v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .+.+.+||.++.|.+.....+            .+.|++.++++....+..   +.+..+++.+ +++.++||+|++...
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  128 (194)
T 1dus_A           50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP  128 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCC
Confidence            357889999999886443322            277888888777655443   8999999877 456789999999888


Q ss_pred             cccC-Ch-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHEL-PG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~-~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +|+. .. ..++++++++|||||++++..+..
T Consensus       129 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             STTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            7763 33 789999999999999999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.55  E-value=1.2e-06  Score=75.52  Aligned_cols=116  Identities=20%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCC----CCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~----lp~~~~sfD~V~s   65 (276)
                      ++.|.+||+++.|.+..+..+.              +.|++.+++++... .++.++.+|+..    +++. ++||+|+.
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~  149 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE  149 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE
Confidence            4678899999999875432222              66777777765443 568999999988    7777 79999993


Q ss_pred             ccccccCC-h---HHHHHHHHHhccCCcEEEEEecCC--CCchhHHHH-HHHHHHHHHHCCCcchhhhh
Q 023870           66 ISSSHELP-G---DQLLEEISRVLKPGGTILIYKKLT--SDKGDVDKA-ISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        66 ~~~l~~~~-~---~~~l~ei~rvLKPgG~l~i~~~~~--~~~~~~~~~-~~~l~~~l~laGF~~v~~~~  127 (276)
                           +++ .   ..++++++|+|||||+|++.....  ......... .+.+. .|..+||..++...
T Consensus       150 -----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~  212 (230)
T 1fbn_A          150 -----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVD  212 (230)
T ss_dssp             -----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred             -----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence                 222 2   567999999999999999962111  111111121 23555 77888998665443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.53  E-value=1.8e-07  Score=83.06  Aligned_cols=93  Identities=15%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC-----CCeEEEeccCCCCC---CCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD-----PQIITQASSLSQLP---VESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~-----~~v~~~~~d~~~lp---~~~~sfD~V~   64 (276)
                      ..+.+||.|+.|.+..+..+.            +.|++.|+++.....     .++.+..+++..++   +++++||+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            457889999999875544333            788888876542221     34778889999888   8899999999


Q ss_pred             ec-cccccCCh--------HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SI-SSSHELPG--------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~-~~l~~~~~--------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +. .+++|+++        ..++++++|+|||||+|++..+.
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            98 78887764        67999999999999999998764

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.52  E-value=7e-07  Score=76.38  Aligned_cols=110  Identities=13%  Similarity=0.066  Sum_probs=79.6

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~   68 (276)
                      .+..||.|+.|.+.-+..+.              +.|++.|++++...+. ++.++++|+..++  +++++||.|++.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            47789999999875433222              7788888887766654 5899999999876  78899999998765


Q ss_pred             cccCC---------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           69 SHELP---------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        69 l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ..|..         ...++++++|+|||||.|++.+...    ..   ...+...+..+||..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~----~~---~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR----GL---FEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH----HH---HHHHHHHHHHHTCEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH----HH---HHHHHHHHHHCCCcc
Confidence            44432         2579999999999999999987431    11   123344566678754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.50  E-value=6.5e-07  Score=78.85  Aligned_cols=114  Identities=16%  Similarity=0.056  Sum_probs=82.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCC---CCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVE---SFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~---~~sfD~V~s~   66 (276)
                      +.+.+||+|+.|.+.++..+.              +.|++.|++++...+. ++.++++++++++..   +++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            568899999999987733222              7788888887776665 499999999988753   4799999996


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ...   +-..++.+++++|||||+|++..... ...++    ..+...+...||...+..
T Consensus       159 a~~---~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~e~----~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          159 AVA---PLCVLSELLLPFLEVGGAAVAMKGPR-VEEEL----APLPPALERLGGRLGEVL  210 (249)
T ss_dssp             SSC---CHHHHHHHHGGGEEEEEEEEEEECSC-CHHHH----TTHHHHHHHHTEEEEEEE
T ss_pred             CcC---CHHHHHHHHHHHcCCCeEEEEEeCCC-cHHHH----HHHHHHHHHcCCeEEEEE
Confidence            432   12789999999999999999876431 11222    245556777898865543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.50  E-value=6.5e-07  Score=78.63  Aligned_cols=114  Identities=11%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             CC-CCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCC--CCCCceeEEEe
Q 023870            4 GK-MQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLP--VESFSIDTVLS   65 (276)
Q Consensus         4 ~~-~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp--~~~~sfD~V~s   65 (276)
                      ++ .+.+||+++.|.+..+..+             .+.|++.|++++...+.  ++.++++|+.+++  ++.++||+|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            45 7889999999887542222             27888888887766554  4899999998876  56889999999


Q ss_pred             ccccccC--------------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           66 ISSSHEL--------------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        66 ~~~l~~~--------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      +..++..                    .+ ..++++++++|||||+|++.....    ...    .+...+...||....
T Consensus       126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~----~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE----RLL----DIIDIMRKYRLEPKR  197 (259)
T ss_dssp             CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT----THH----HHHHHHHHTTEEEEE
T ss_pred             CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH----HHH----HHHHHHHHCCCceEE
Confidence            7544322                    11 569999999999999999965432    122    445567778887654


Q ss_pred             h
Q 023870          125 R  125 (276)
Q Consensus       125 ~  125 (276)
                      .
T Consensus       198 ~  198 (259)
T 3lpm_A          198 I  198 (259)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.50  E-value=2.7e-07  Score=80.84  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc-cc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l-~~   71 (276)
                      +.+.+||.++.|.+.-+..+.            +.|++.|+++..    . .++++++..+++++++||+|++...+ |+
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~----~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  127 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----K-NVVEAKAEDLPFPSGAFEAVLALGDVLSY  127 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----S-CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC----C-CEEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence            468899999998875433332            788888877643    1 27889999999999999999997755 44


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .++ ..++++++|+|||||+|++..+.
T Consensus       128 ~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          128 VENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            455 88999999999999999998865

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.49  E-value=5.7e-07  Score=77.89  Aligned_cols=91  Identities=14%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc-cccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~-~l~~   71 (276)
                      +.+.+||.++.|.+.-+..+.            +.|++.|+++....+.++.++++|+.+++++ ++||+|++.. .+++
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            467899999999875433332            7888988888776677799999999998875 6899999864 4455


Q ss_pred             CC--h-HHHHHHHHHhccCCcEEEEEec
Q 023870           72 LP--G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        72 ~~--~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++  + ..++++++++|||||.|++..+
T Consensus       119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          119 FDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            54  2 7899999999999999987654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.47  E-value=3.2e-07  Score=85.17  Aligned_cols=115  Identities=10%  Similarity=0.067  Sum_probs=81.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||+|+.|.+..+..+.             +.|++.|++     ..++.++.+|+.+ |++..  |+|++...+|
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh  272 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-----FSGVEHLGGDMFD-GVPKG--DAIFIKWICH  272 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-----CTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh-----cCCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence            4567899999999875544333             334443332     2568999999987 77754  9999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCCCCc--h----------hHHH----------HHHHHHHHHHHCCCcchhh
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--G----------DVDK----------AISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~--~----------~~~~----------~~~~l~~~l~laGF~~v~~  125 (276)
                      ++++   ..+|++++|+|||||+|++.+......  .          ++..          +.+++...+..+||..++.
T Consensus       273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~  352 (368)
T 3reo_A          273 DWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKV  352 (368)
T ss_dssp             GBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEE
Confidence            9986   478999999999999999998653210  0          0000          0234566788888887665


Q ss_pred             h
Q 023870          126 I  126 (276)
Q Consensus       126 ~  126 (276)
                      .
T Consensus       353 ~  353 (368)
T 3reo_A          353 A  353 (368)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.47  E-value=7.7e-07  Score=82.49  Aligned_cols=86  Identities=15%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||+|+.|.+.-+..+.             +.|++.|++     ..++.++.+|+.+ |++..  |+|++.+.+|
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh  270 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-----FPGVTHVGGDMFK-EVPSG--DTILMKWILH  270 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-----CTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-----cCCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence            4567899999999875544343             334433322     2569999999987 88764  9999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++   ..+|++++++|||||+|++.+..
T Consensus       271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          271 DWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             GSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9976   57899999999999999999865

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.47  E-value=4e-07  Score=78.19  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccC-CCCCCC-CCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSL-SQLPVE-SFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~-~~lp~~-~~sfD~V~s~~~l   69 (276)
                      ++.|.+||.++.|.+.-+..+.            +.|++.++++    ..++.++++|+ +.+|++ +++||+|++..  
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~--  119 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----APHADVYEWNGKGELPAGLGAPFGLIVSRR--  119 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCCTTCCCCEEEEEEES--
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----CCCceEEEcchhhccCCcCCCCEEEEEeCC--
Confidence            4678999999999875433222            7888888776    34689999999 688998 89999999872  


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                         ....++++++|+|||||+|+..... .+..       .+...+..+||..+..
T Consensus       120 ---~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~-------~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          120 ---GPTSVILRLPELAAPDAHFLYVGPR-LNVP-------EVPERLAAVGWDIVAE  164 (226)
T ss_dssp             ---CCSGGGGGHHHHEEEEEEEEEEESS-SCCT-------HHHHHHHHTTCEEEEE
T ss_pred             ---CHHHHHHHHHHHcCCCcEEEEeCCc-CCHH-------HHHHHHHHCCCeEEEE
Confidence               1257899999999999999933221 1111       4566788899986543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.46  E-value=8.6e-07  Score=80.30  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=82.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCCCC--CCCceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQLPV--ESFSIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~lp~--~~~sfD~V   63 (276)
                      +.+.+||+++.|.+.-+..+.              +.|++.|+++...     ...++.++.+|+...+.  ++++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            567899999999875544333              7788888776521     24568999999887654  47899999


Q ss_pred             EeccccccCCh-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           64 LSISSSHELPG-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        64 ~s~~~l~~~~~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ++....++.+.     .+++++++|+|||||+|++........   ......+...+..+||..+...
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---~~~~~~~~~~l~~~GF~~v~~~  238 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD---LELIEKMSRFIRETGFASVQYA  238 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC---HHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc---hHHHHHHHHHHHhCCCCcEEEE
Confidence            99765554332     589999999999999999986543111   1223466677888999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.46  E-value=1.4e-06  Score=71.05  Aligned_cols=107  Identities=9%  Similarity=-0.055  Sum_probs=74.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC--CeEEEeccCC-CCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP--QIITQASSLS-QLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~--~v~~~~~d~~-~lp~~~~sfD~V~s~   66 (276)
                      ++.|.+||+++.|.+.-+..+.              +.|++.|+++....+.  ++ ++.+++. .++...++||+|++.
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence            4678899999998864433222              7788888887766554  47 7778774 334333899999998


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      ..+++   ..++++++++|||||++++......   .    ...+...+...|+.
T Consensus       102 ~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~---~----~~~~~~~~~~~~~~  146 (178)
T 3hm2_A          102 GGLTA---PGVFAAAWKRLPVGGRLVANAVTVE---S----EQMLWALRKQFGGT  146 (178)
T ss_dssp             C-TTC---TTHHHHHHHTCCTTCEEEEEECSHH---H----HHHHHHHHHHHCCE
T ss_pred             CcccH---HHHHHHHHHhcCCCCEEEEEeeccc---c----HHHHHHHHHHcCCe
Confidence            88776   5789999999999999999886521   1    12344456666654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.46  E-value=9.8e-07  Score=78.76  Aligned_cols=91  Identities=13%  Similarity=0.195  Sum_probs=71.4

Q ss_pred             CCcEEEEccCC---CCcHHH--------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCC-----------CCCC
Q 023870            7 QSAVLALSEDK---ILPVSA--------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLP-----------VESF   58 (276)
Q Consensus         7 g~~vL~v~~~~---~~~~~~--------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-----------~~~~   58 (276)
                      ...||+|+.|.   +.-...              +.+.|++.|+++... ..++.++++|+.+.+           ++.+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            36899999988   422111              118899999887643 346899999997531           3345


Q ss_pred             ceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           59 SIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        59 sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +||+|++..++||+++   ..+|++++|+|||||+|++.+...
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            8999999999999985   789999999999999999999875

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.45  E-value=2.3e-07  Score=78.60  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhh---CCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHH
Q 023870            5 KMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQ---CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEE   80 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~---~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~e   80 (276)
                      ..+.+||.++.|.+..+..+       + .++..   ....+.+.++++.++|+++++||+|++..++|+ .+ ..++++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l-------~-~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~  136 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI-------R-NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEE  136 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC-------C-SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHH
T ss_pred             CCCCeEEEECCcCCHHHHHh-------h-ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHH
Confidence            56789999999886432221       1 11111   111356788999999999999999999999886 44 899999


Q ss_pred             HHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           81 ISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        81 i~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      ++++|||||++++.++.....     ..+.+...+..+||..+..
T Consensus       137 ~~~~L~~gG~l~i~~~~~~~~-----~~~~~~~~l~~~Gf~~~~~  176 (215)
T 2zfu_A          137 ANRVLKPGGLLKVAEVSSRFE-----DVRTFLRAVTKLGFKIVSK  176 (215)
T ss_dssp             HHHHEEEEEEEEEEECGGGCS-----CHHHHHHHHHHTTEEEEEE
T ss_pred             HHHhCCCCeEEEEEEcCCCCC-----CHHHHHHHHHHCCCEEEEE
Confidence            999999999999998753211     1236677789999987653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.45  E-value=1.2e-06  Score=73.14  Aligned_cols=95  Identities=9%  Similarity=0.023  Sum_probs=72.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCC-CCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLP-VESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp-~~~~sfD~V~s   65 (276)
                      ++.|.+||+++.|.+.-...+.               +.|++.|+++....+.  ++.++++|+..++ +.+++||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            5788999999999874322221               6788888888776654  5899999998886 66789999998


Q ss_pred             ccccc-----cC-C---h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 ISSSH-----EL-P---G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~l~-----~~-~---~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ...+.     ++ .   + ..++++++++|||||++++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            76441     11 1   2 579999999999999999988653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.44  E-value=5.8e-07  Score=81.62  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             CcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhC--CCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            8 SAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         8 ~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      .+||.|+.|.+..+..+.             +.|++.|+++....  ..++.++.+|+.+ +++ .+||+|++...+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~  246 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDL  246 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCC
Confidence            789999988875444343             23666676665433  2458999999977 666 689999999999988


Q ss_pred             Ch---HHHHHHHHHhccCCcEEEEEecC
Q 023870           73 PG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        73 ~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++   ..++++++++|||||+|++.+..
T Consensus       247 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          247 DEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            86   38999999999999999999865

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.44  E-value=1.1e-06  Score=82.39  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=77.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc--
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE--   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~--   71 (276)
                      .|.+||+++.|.+.-+..+.            +.|++.|++++...+..+.++.+|+.+.+.++++||+|+++..+|+  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            67899999999986544333            7889999888877777789999999998887789999999988887  


Q ss_pred             ---CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           72 ---LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ---~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                         ... ..++++++++|||||+|++....
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence               333 78999999999999999998755

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.44  E-value=7.4e-07  Score=77.34  Aligned_cols=112  Identities=14%  Similarity=0.027  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhC-C-CCeEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQC-D-PQIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~-~-~~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.|.+||.++.|.+..+..+               .+.|++.|+++.... + .++.+..+|+.+.++++++||+|++.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            568899999999886432211               166777777766544 3 45899999999888888999999983


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                           +++ ..++++++++|||||++++..+..       .....+...+..+||..++...
T Consensus       174 -----~~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          174 -----LMEPWKVLEKAALALKPDRFLVAYLPNI-------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             -----SSCGGGGHHHHHHHEEEEEEEEEEESCH-------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             -----CcCHHHHHHHHHHhCCCCCEEEEEeCCH-------HHHHHHHHHHHHCCCceEEEEE
Confidence                 233 578999999999999999998652       1122445566679998766543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.40  E-value=1.8e-06  Score=70.82  Aligned_cols=111  Identities=16%  Similarity=0.131  Sum_probs=80.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCC-CceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVES-FSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~-~sfD~V~s~~~   68 (276)
                      +..+.+||.++.|.+.....+.            +.|++.++++....+.  ++.+..+++.. +++. .+||+|++...
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~  109 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS  109 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence            4678899999998865433332            6778888777665554  68888888876 4444 58999999876


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      ++++  ..++++++++|+|||++++..+..       .....+...+...|| .++.
T Consensus       110 ~~~~--~~~l~~~~~~l~~gG~l~~~~~~~-------~~~~~~~~~l~~~g~-~~~~  156 (192)
T 1l3i_A          110 GGEL--QEILRIIKDKLKPGGRIIVTAILL-------ETKFEAMECLRDLGF-DVNI  156 (192)
T ss_dssp             TTCH--HHHHHHHHHTEEEEEEEEEEECBH-------HHHHHHHHHHHHTTC-CCEE
T ss_pred             hHHH--HHHHHHHHHhcCCCcEEEEEecCc-------chHHHHHHHHHHCCC-ceEE
Confidence            5533  689999999999999999988652       112355667888999 4443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.39  E-value=5e-06  Score=70.61  Aligned_cols=108  Identities=7%  Similarity=-0.047  Sum_probs=78.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.|.+||+++.|.+.-...+.            +.|++.|++++...+.  ++.++.+|+.+.......||+|++...+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            4678999999999864432222            7888888887766654  4899999998743334689999987633


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                         ... ++++++++|||||+|++.....       .....+...+...||..
T Consensus       133 ---~~~-~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~~g~~i  174 (204)
T 3njr_A          133 ---SQA-LYDRLWEWLAPGTRIVANAVTL-------ESETLLTQLHARHGGQL  174 (204)
T ss_dssp             ---CHH-HHHHHHHHSCTTCEEEEEECSH-------HHHHHHHHHHHHHCSEE
T ss_pred             ---cHH-HHHHHHHhcCCCcEEEEEecCc-------ccHHHHHHHHHhCCCcE
Confidence               235 9999999999999999988652       11224555677777653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.38  E-value=1.5e-06  Score=73.71  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHH----HHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDL----GDEAVEQCDP-QIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~----A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      ++.|.+||.++.|.+..+..+.              +.|++.    |+++....+. ++.++++|++++|+++++ |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            4678899999999875543333              444443    3333323333 689999999999998877 8777


Q ss_pred             eccc---c--ccCCh-HHHHHHHHHhccCCcEEEEEecCCCC---------c--hhHHHHHHHHHHHHHHCCCcchh
Q 023870           65 SISS---S--HELPG-DQLLEEISRVLKPGGTILIYKKLTSD---------K--GDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        65 s~~~---l--~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~---------~--~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ....   .  ||+++ ..++++++|+|||||+|++.......         .  .......+.+...+..+||...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            4432   2  25555 88999999999999999996532110         0  00111223477788999997543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.38  E-value=7.6e-07  Score=74.12  Aligned_cols=94  Identities=14%  Similarity=0.073  Sum_probs=74.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEeccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISS   68 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~   68 (276)
                      ..|.+||+++.|.+.-...+.             +.|++.|++++...+. ++.++++|+.+++  +++++||+|++...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            468899999999875432122             7888988887766554 6899999998764  45789999999888


Q ss_pred             cccC-Ch-HHHHHHHHH--hccCCcEEEEEecCC
Q 023870           69 SHEL-PG-DQLLEEISR--VLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~-~~-~~~l~ei~r--vLKPgG~l~i~~~~~   98 (276)
                      +++. .. ..++.++.+  +|||||+|++.....
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            7775 34 889999999  999999999987653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.38  E-value=1.4e-06  Score=77.34  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=80.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC-C-CCeEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC-D-PQIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~-~-~~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.|.+||+++.|.+.....+.               +.|++.|+++.... + .++.+..+|+.. ++++++||+|++.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD  186 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence            5678999999998764322221               67778887776554 4 358999999987 7778899999982


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                           +++ ..++++++++|||||++++..+..    .   ....+...+..+||..++..
T Consensus       187 -----~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~---~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          187 -----IPDPWNHVQKIASMMKPGSVATFYLPNF----D---QSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             -----CSCGGGSHHHHHHTEEEEEEEEEEESSH----H---HHHHHHHHSGGGTEEEEEEE
T ss_pred             -----CcCHHHHHHHHHHHcCCCCEEEEEeCCH----H---HHHHHHHHHHHCCCeEEEEE
Confidence                 333 689999999999999999998652    1   12345566777899866543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.36  E-value=1.7e-06  Score=72.95  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||.++.|.+.....+.            +.|++.|+++....+. ++.+..+|+...+.+.++||+|++...++
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence            4678999999999865433222            7788888887766553 48999999988777788999999999888


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++     +++++|||||+|++....
T Consensus       155 ~~~~-----~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          155 EIPT-----ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SCCT-----HHHHTEEEEEEEEEEECS
T ss_pred             hhhH-----HHHHhcccCcEEEEEEcC
Confidence            8874     689999999999998765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.35  E-value=3.6e-06  Score=72.41  Aligned_cols=120  Identities=13%  Similarity=0.086  Sum_probs=74.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCC---CCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~---lp~~~~sfD~V~s   65 (276)
                      ++.|.+||+++.|.+.-+..+.               +.|++.+.+.+.. ..++.++.+|+.+   +++.+++||+|++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-RTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-CTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-cCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            5678999999999874432222               2222322222222 1568999999987   5666789999998


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCC--CCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~--~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ...  .... ..++.+++++|||||+|++.....  .........+......|..+||..++..
T Consensus       154 ~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  215 (233)
T 2ipx_A          154 DVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQL  215 (233)
T ss_dssp             CCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEE
T ss_pred             cCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            654  2222 556889999999999999965431  0001111112122466788899876644

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.34  E-value=2.7e-06  Score=74.48  Aligned_cols=86  Identities=23%  Similarity=0.297  Sum_probs=67.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +.+.+||+++.|.+.-...+.              +.|++.|+++.    .++.+..++++.+|+++++||+|+++.+. 
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAP-  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCC-
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCCCceeEEEEeCCh-
Confidence            578899999998865543332              56777776653    45788999999999999999999986553 


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSD  100 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~  100 (276)
                           .++++++|+|||||+|++.++....
T Consensus       159 -----~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          159 -----CKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             -----CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             -----hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence                 3589999999999999999887543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.34  E-value=2.4e-06  Score=74.25  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=81.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.|.+||+++.|.+.-...+.               +.|++.|+++....+.  .+.+..+|+.+. +++++||+|++.
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~  169 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILD  169 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEEC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEEC
Confidence            5688999999999864422221               6777888777665443  389999999864 778899999984


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCC--Ccchhhhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG--FLDAQRIQ  127 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laG--F~~v~~~~  127 (276)
                      .     ++ ..++++++++|||||++++..+..       ...+.+...+..+|  |..++...
T Consensus       170 ~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          170 L-----PQPERVVEHAAKALKPGGFFVAYTPCS-------NQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             S-----SCGGGGHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             C-----CCHHHHHHHHHHHcCCCCEEEEEECCH-------HHHHHHHHHHHHcCCCccccEEEE
Confidence            3     23 578999999999999999987652       11235566788899  98776543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.33  E-value=7.5e-07  Score=81.81  Aligned_cols=86  Identities=9%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||.|+.|.+.-+..+.             +.|++.|++.     .++.++.+|+.. +++.  ||+|++..++|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----~~v~~~~~d~~~-~~p~--~D~v~~~~~lh  257 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-----NNLTYVGGDMFT-SIPN--ADAVLLKYILH  257 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB-----TTEEEEECCTTT-CCCC--CSEEEEESCGG
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccC-----CCcEEEeccccC-CCCC--ccEEEeehhhc
Confidence            4567899999999875444333             2344444331     348999999966 6663  99999999999


Q ss_pred             cCCh-H--HHHHHHHHhccC---CcEEEEEecC
Q 023870           71 ELPG-D--QLLEEISRVLKP---GGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~--~~l~ei~rvLKP---gG~l~i~~~~   97 (276)
                      ++++ .  .+|++++|+|||   ||+|++.++.
T Consensus       258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            9987 4  899999999999   9999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.33  E-value=9.9e-07  Score=76.08  Aligned_cols=92  Identities=9%  Similarity=-0.010  Sum_probs=71.0

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCC-C--CCCCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQL-P--VESFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~l-p--~~~~sfD~V~s~~   67 (276)
                      .+..||.|+.|.+.-+..+.              +.|++.|++++...+. ++.++++|+..+ +  +++++||.|++++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            57789999999875433222              7788888887766654 599999999874 4  7899999999986


Q ss_pred             ccccCCh---------HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG---------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~---------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ...|...         ..++++++|+|||||+|++.+..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            6555432         25999999999999999998743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.32  E-value=7.2e-06  Score=70.12  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCC----CCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l----p~~~~sfD~V~s   65 (276)
                      ++.|++||+++.|.+.-...+.              +.|++.+.+++.. ..++.++++|+...    ++. ++||+|++
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~  132 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIV-EKVDLIYQ  132 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence            4789999999999874322111              4433322222221 14578888888763    555 79999998


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCC--CCchhHHHHHHHHHHHHHHCCCcchhhhhc
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQL  128 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~--~~~~~~~~~~~~l~~~l~laGF~~v~~~~~  128 (276)
                      ... +. .. ..++++++|+|||||+|++.....  ................+..+ |..++....
T Consensus       133 ~~~-~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~  195 (210)
T 1nt2_A          133 DIA-QK-NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL  195 (210)
T ss_dssp             CCC-ST-THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             ecc-Ch-hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence            742 22 22 456999999999999999985321  01111222221112236777 887665543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.31  E-value=8.4e-07  Score=78.07  Aligned_cols=113  Identities=15%  Similarity=0.093  Sum_probs=81.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.|.+||+++.|.+.-+..+.            +.|++.|++++...+..+.+..+++.. ++++++||+|+++...++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH
Confidence            4678999999999865432222            566777777766555557888888866 356779999998754443


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +  ..++.+++++|||||+++++.....   .    ...+...+..+||..++..
T Consensus       197 ~--~~~l~~~~~~LkpgG~lils~~~~~---~----~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          197 H--AALAPRYREALVPGGRALLTGILKD---R----APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             H--HHHHHHHHHHEEEEEEEEEEEEEGG---G----HHHHHHHHHHTTCEEEEEE
T ss_pred             H--HHHHHHHHHHcCCCCEEEEEeeccC---C----HHHHHHHHHHCCCEEEEEe
Confidence            2  6789999999999999999875431   1    1256667888999876543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.30  E-value=3.4e-06  Score=74.32  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC-C---CCeEEEeccCCCCCCCCCceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC-D---PQIITQASSLSQLPVESFSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~-~---~~v~~~~~d~~~lp~~~~sfD~V~   64 (276)
                      ++.|.+||.++.|.+.-+..+.               +.|++.|+++.... +   .++.+..+|+...++++++||+|+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~  176 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  176 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEE
Confidence            5688999999998764322221               66777777766544 3   468999999999888888999999


Q ss_pred             eccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHH-CCCcchhhh
Q 023870           65 SISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL-AGFLDAQRI  126 (276)
Q Consensus        65 s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~l-aGF~~v~~~  126 (276)
                      +...    ....++.+++++|||||+|++..+..   ..+.    .+...+.. .||..++.+
T Consensus       177 ~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~---~~~~----~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          177 LDML----APWEVLDAVSRLLVAGGVLMVYVATV---TQLS----RIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             EESS----CGGGGHHHHHHHEEEEEEEEEEESSH---HHHH----HHHHHHHHHSSBCCCEEE
T ss_pred             ECCc----CHHHHHHHHHHhCCCCCEEEEEeCCH---HHHH----HHHHHHHhcCCcCCcEEE
Confidence            8432    12578999999999999999998652   1121    33333444 789876544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.30  E-value=2.6e-06  Score=74.26  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh------CC-CCeEEEeccCCC-CC--CCCCce
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ------CD-PQIITQASSLSQ-LP--VESFSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~------~~-~~v~~~~~d~~~-lp--~~~~sf   60 (276)
                      ..+..||.|+.|.+.-+..+.              +.|++.|++++..      .+ .++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            446678999988875433222              7788887765432      22 458999999986 77  889999


Q ss_pred             eEEEeccccccCC---------hHHHHHHHHHhccCCcEEEEEecC
Q 023870           61 DTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        61 D~V~s~~~l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |.|++.+...|..         ...++++++|+|||||.|++....
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            9999876544432         147999999999999999998643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.28  E-value=2.3e-06  Score=78.82  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=69.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +..|.+||+|+.|.+.-+..+.            ..|++.|++++...+..  +.+++++++++++++++||+|++....
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3567899999999874432222            13777888777665543  899999999999999999999996543


Q ss_pred             ccC---Ch-HHHHHHHHHhccCCcEEEEE
Q 023870           70 HEL---PG-DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        70 ~~~---~~-~~~l~ei~rvLKPgG~l~i~   94 (276)
                      +++   .. ..++.++.|+|||||+|+..
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            333   34 78999999999999999743

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.28  E-value=1.1e-06  Score=81.28  Aligned_cols=86  Identities=12%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.+.+||.|+.|.+.-+..+.             +.|++.|++     ..++.++.+|+.+ +++.  ||+|++..++|
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh  278 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-----LSGIEHVGGDMFA-SVPQ--GDAMILKAVCH  278 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-----CTTEEEEECCTTT-CCCC--EEEEEEESSGG
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-----cCCCEEEeCCccc-CCCC--CCEEEEecccc
Confidence            4567899999999875443332             334443332     1458999999987 7765  99999999999


Q ss_pred             cCCh-H--HHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-D--QLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~--~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++++ .  .+|++++|+|||||+|++.+..
T Consensus       279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          279 NWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            9987 4  8999999999999999998754

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.26  E-value=6.7e-07  Score=84.77  Aligned_cols=95  Identities=13%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhh-------hhCC---CCeEEEeccCCCCCCCC-
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAV-------EQCD---PQIITQASSLSQLPVES-   57 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~-------~~~~---~~v~~~~~d~~~lp~~~-   57 (276)
                      .++.|+.||+|+.|.+..+..+.              +.|+++|++.+       ...+   .+|.++++|+.++|+.+ 
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            36789999999999975432221              56677766532       2222   46999999999999865 


Q ss_pred             -CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           58 -FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        58 -~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                       ..||+|++++.++ .++ ...|.+++|+|||||+|++.+...
T Consensus       250 ~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          250 IANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             HHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             cCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence             5799999877654 345 888999999999999999887653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.25  E-value=3.9e-06  Score=71.67  Aligned_cols=89  Identities=12%  Similarity=0.053  Sum_probs=69.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.+.+||.++.|.+.....+.            +.|++.++++....+ ++.++.+|+......+++||+|++...+++
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  146 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPT  146 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHH
Confidence            4678899999999865433222            778888888766555 789999999873335679999999998888


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.     .+++++|||||++++.....
T Consensus       147 ~~-----~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          147 LL-----CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             CC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             HH-----HHHHHHcCCCcEEEEEEcCC
Confidence            76     46899999999999997653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.25  E-value=3.3e-06  Score=75.21  Aligned_cols=89  Identities=16%  Similarity=0.066  Sum_probs=65.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCC-----CCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPV-----ESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~-----~~~sfD~V~s   65 (276)
                      .++.|.+||+++.|.+.-+..+.            +.|++.|++++....     +..++..++.     .+++||+|++
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeecccccccccCCCccEEEE
Confidence            35678999999999875432222            889999988765442     2233333332     2578999999


Q ss_pred             ccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..++||+..   ..++++++++| |||+|+++...
T Consensus       117 ~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          117 DRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             hhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            999988764   67999999999 99999998754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.25  E-value=3.3e-06  Score=77.59  Aligned_cols=89  Identities=12%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecc--
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSIS--   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~--   67 (276)
                      +..|.+||+|+.|.+.-+..+.            ..|++.|++++...+  .++.+++++++++++++++||+|++..  
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            4578899999999864322221            127777877766555  358999999999999989999999865  


Q ss_pred             -ccccCCh-HHHHHHHHHhccCCcEEE
Q 023870           68 -SSHELPG-DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        68 -~l~~~~~-~~~l~ei~rvLKPgG~l~   92 (276)
                       .+++... ..++.++.|+|||||+++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence             3344444 779999999999999997

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.24  E-value=9.5e-06  Score=71.50  Aligned_cols=95  Identities=9%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhh---CCC--CeEEEeccCCCC-------CCC
Q 023870            3 TGKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQ---CDP--QIITQASSLSQL-------PVE   56 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~---~~~--~v~~~~~d~~~l-------p~~   56 (276)
                      .++.+.+||+++.|.+.....+              .+.|++.|++++..   .+.  ++.++++|+.++       +++
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            3567889999999887542211              17788888887765   444  389999999887       367


Q ss_pred             CCceeEEEeccccccC-----------------C-h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           57 SFSIDTVLSISSSHEL-----------------P-G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~-----------------~-~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++||+|+++..++..                 . . ..+++++.++|||||+|++....
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            8899999997433322                 1 2 68899999999999999987643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.24  E-value=5.4e-06  Score=73.30  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ++.|.+||.++.|.+.-+..+               .+.|++.|+++....+.  ++.+..+|+.+. +++++||+|++.
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~  188 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD  188 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence            467889999998886432211               16677778777665554  588999999876 777899999984


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      .     ++ ..++.+++++|||||+|++..+..   ..    ...+...+..+||..++..
T Consensus       189 ~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~---~~----~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          189 V-----PDPWNYIDKCWEALKGGGRFATVCPTT---NQ----VQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             C-----SCGGGTHHHHHHHEEEEEEEEEEESSH---HH----HHHHHHHHHHSSEEEEEEE
T ss_pred             C-----cCHHHHHHHHHHHcCCCCEEEEEeCCH---HH----HHHHHHHHHHCCCceeEEE
Confidence            3     33 578999999999999999998642   11    2244556777999876544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.24  E-value=5.4e-06  Score=73.38  Aligned_cols=112  Identities=16%  Similarity=0.213  Sum_probs=79.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..+.+||+++.|.+..+..+.              +.|++.|++++...+. ++.++++|+.. ++++++||+|+++..+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy  186 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY  186 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCC
Confidence            467799999888865432222              6788888887765554 58999999876 3557799999997443


Q ss_pred             ccC-------------C------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           70 HEL-------------P------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        70 ~~~-------------~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      +..             +            . ..++.+++++|||||++++.....    . .   +.+...+..+||..+
T Consensus       187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~-~---~~~~~~l~~~Gf~~v  258 (276)
T 2b3t_A          187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ----Q-G---EAVRQAFILAGYHDV  258 (276)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS----C-H---HHHHHHHHHTTCTTC
T ss_pred             CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch----H-H---HHHHHHHHHCCCcEE
Confidence            221             1            2 678899999999999999875432    1 1   145566788999866


Q ss_pred             hh
Q 023870          124 QR  125 (276)
Q Consensus       124 ~~  125 (276)
                      +.
T Consensus       259 ~~  260 (276)
T 2b3t_A          259 ET  260 (276)
T ss_dssp             CE
T ss_pred             EE
Confidence            53

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.22  E-value=7.5e-06  Score=76.03  Aligned_cols=112  Identities=14%  Similarity=0.054  Sum_probs=77.3

Q ss_pred             CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC-CCC-CCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ-LPV-ESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~-~~~sfD~V~s~~~   68 (276)
                      .|.+||+++ |.+.-+..+              .+.|++.|++++...+. ++.++++|+.. +|. .+++||+|++...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            578999999 876432211              27888989888776555 69999999988 764 4578999999876


Q ss_pred             cccCChHHHHHHHHHhccCCcEE-EEEecC-CCCchhHHHHHHHHHHHHH-HCCCcc
Q 023870           69 SHELPGDQLLEEISRVLKPGGTI-LIYKKL-TSDKGDVDKAISALEGKLL-LAGFLD  122 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l-~i~~~~-~~~~~~~~~~~~~l~~~l~-laGF~~  122 (276)
                      ++......++++++++|||||++ ++.... ..+.    ..+..+...+. ..||..
T Consensus       251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          251 ETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSL----DKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             SSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCH----HHHHHHHHHHHHTSCCEE
T ss_pred             CchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCH----HHHHHHHHHHHHhcCcch
Confidence            55443478999999999999954 444433 1221    11234555555 678754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.22  E-value=2.2e-07  Score=77.90  Aligned_cols=114  Identities=6%  Similarity=-0.040  Sum_probs=64.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-----CceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-----~sfD~V~s   65 (276)
                      +.+.+||.++.|.+.-+..+.              +.|++.|+++....+.++.++++|+.+ ++++     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence            678899999999875433222              667777777665554467888888877 6666     89999999


Q ss_pred             ccccccCCh---------------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHH--
Q 023870           66 ISSSHELPG---------------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL--  116 (276)
Q Consensus        66 ~~~l~~~~~---------------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~--  116 (276)
                      +..+++...                           ..++++++++|||||++++.+......       +.+...+.  
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-------~~~~~~l~~~  180 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQA-------DEVARLFAPW  180 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCH-------HHHHHHTGGG
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccH-------HHHHHHHHHh
Confidence            654432211                           567888999999999955554432111       14455566  


Q ss_pred             HCCCcchhhh
Q 023870          117 LAGFLDAQRI  126 (276)
Q Consensus       117 laGF~~v~~~  126 (276)
                      .+||..+...
T Consensus       181 ~~gf~~~~~~  190 (215)
T 4dzr_A          181 RERGFRVRKV  190 (215)
T ss_dssp             GGGTEECCEE
T ss_pred             hcCCceEEEE
Confidence            7889776543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.20  E-value=5.5e-06  Score=73.83  Aligned_cols=114  Identities=9%  Similarity=-0.025  Sum_probs=82.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ++.|.+||+++.|.+.-+..+             .+.|++.|++++...+.  .+.++++|+.+++. .++||+|++...
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence            567899999999987542222             17888888887765554  38899999998876 789999998643


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      .   ....++.+++++|||||+|++.+..+.... .....+.+...+..+||..
T Consensus       202 ~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~i~~~~~~~G~~~  251 (278)
T 2frn_A          202 V---RTHEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             S---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTCEE
T ss_pred             h---hHHHHHHHHHHHCCCCeEEEEEEeeccccc-cccHHHHHHHHHHHcCCee
Confidence            2   126789999999999999999887642110 0111235667788889864

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.19  E-value=6.2e-06  Score=83.99  Aligned_cols=92  Identities=7%  Similarity=0.081  Sum_probs=73.8

Q ss_pred             CCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhh------CC-CCeEEEeccCCCCCCCCCceeE
Q 023870            5 KMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQ------CD-PQIITQASSLSQLPVESFSIDT   62 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~------~~-~~v~~~~~d~~~lp~~~~sfD~   62 (276)
                      ..+.+||+|+.|.+..+.               ++.+.|++.|++++..      .+ .++.++++|+..+++++++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            368899999988864322               2338888888775432      12 3589999999999999999999


Q ss_pred             EEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           63 VLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        63 V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++..+++|+++   ..++++++|+|||| .+++.++.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            999999999997   35899999999999 88888754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.19  E-value=1.5e-05  Score=64.83  Aligned_cols=104  Identities=4%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +..+.+||.++.|.+.-...+.            +.|++.++++....+. ++.++.+|+.+ ++++++||+|++...  
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~--  109 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT--  109 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc--
Confidence            4578899999999875433332            7888888887766554 58899999987 788889999999876  


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                        .. ..++++++++  |||.+++..+..   .    ....+...+..+||.
T Consensus       110 --~~~~~~l~~~~~~--~gG~l~~~~~~~---~----~~~~~~~~l~~~g~~  150 (183)
T 2yxd_A          110 --KNIEKIIEILDKK--KINHIVANTIVL---E----NAAKIINEFESRGYN  150 (183)
T ss_dssp             --SCHHHHHHHHHHT--TCCEEEEEESCH---H----HHHHHHHHHHHTTCE
T ss_pred             --ccHHHHHHHHhhC--CCCEEEEEeccc---c----cHHHHHHHHHHcCCe
Confidence              33 7899999999  999999998652   1    123566678888974

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.19  E-value=2.9e-06  Score=73.42  Aligned_cols=121  Identities=10%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHH---HHhhhhCCC-CeEEEeccCCCCCCC-CCceeEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLG---DEAVEQCDP-QIITQASSLSQLPVE-SFSIDTV   63 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A---~~~~~~~~~-~v~~~~~d~~~lp~~-~~sfD~V   63 (276)
                      .++|.+||+|+.|.+..+..+.               +.|+++|   ++++...+. ++.+.+++++.+|.. ...||.|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence            4678899999999875543332               6677666   666655554 589999999998642 2455555


Q ss_pred             Eecccccc-----CCh-HHHHHHHHHhccCCcEEEEEecCCCCch-------h----HHHH-H-HHHHHHHHHCCCcchh
Q 023870           64 LSISSSHE-----LPG-DQLLEEISRVLKPGGTILIYKKLTSDKG-------D----VDKA-I-SALEGKLLLAGFLDAQ  124 (276)
Q Consensus        64 ~s~~~l~~-----~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~-------~----~~~~-~-~~l~~~l~laGF~~v~  124 (276)
                      ++++...+     ..+ ..++++++|+|||||+|++.........       .    .... . .++...+..+||....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~  181 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD  181 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence            55443211     112 5789999999999999998332211100       0    0011 1 1366778889997543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.16  E-value=3.3e-06  Score=77.66  Aligned_cols=85  Identities=9%  Similarity=0.093  Sum_probs=64.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +.+.+||+|+.|.+.-+..+.             +.|++.|++     ..++.++.+|+.. +++  .||+|++...+|+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~  263 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-----NENLNFVGGDMFK-SIP--SADAVLLKWVLHD  263 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-----CSSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-----CCCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence            456789999998875433333             223332222     1348999999987 776  4999999999999


Q ss_pred             CCh-H--HHHHHHHHhccC---CcEEEEEecC
Q 023870           72 LPG-D--QLLEEISRVLKP---GGTILIYKKL   97 (276)
Q Consensus        72 ~~~-~--~~l~ei~rvLKP---gG~l~i~~~~   97 (276)
                      +++ .  .+|++++|+|||   ||+|++.++.
T Consensus       264 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          264 WNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             SCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            987 5  899999999999   9999998864

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.15  E-value=1.1e-05  Score=72.52  Aligned_cols=92  Identities=8%  Similarity=0.046  Sum_probs=69.4

Q ss_pred             CcEEEEccCCCC--cHHHH---------------HHHHHHHHHHhhhhCC-CCeEEEeccCCCCC------CCCCcee--
Q 023870            8 SAVLALSEDKIL--PVSAV---------------LNAIRDLGDEAVEQCD-PQIITQASSLSQLP------VESFSID--   61 (276)
Q Consensus         8 ~~vL~v~~~~~~--~~~~v---------------~~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp------~~~~sfD--   61 (276)
                      ..+|+|+.|..+  +...+               .+.|+++|+++..... .++.|+++|+.+++      ...++||  
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~  159 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT  159 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence            468999999632  22211               1899999988775432 35899999998863      1145676  


Q ss_pred             ---EEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           62 ---TVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        62 ---~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                         .|+++.++||+++    ..+++++++.|+|||+|++++....
T Consensus       160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence               5888999999987    3699999999999999999987753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.14  E-value=2.3e-06  Score=76.69  Aligned_cols=53  Identities=13%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             CeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 023870           42 QIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        42 ~v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      .|.|.++|+.+.|++ .+.||+|+|.++++|+++   ..++++++++|||||+|++.
T Consensus       195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            488999999887776 678999999999999876   68999999999999999974

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.13  E-value=1.3e-05  Score=72.88  Aligned_cols=116  Identities=17%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.|.+||++..|.+.-...+.               +.|++.+++++...+. ++.++++|+..++...++||+|++..
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            5678999999888764322222               6677888777766555 58999999988876567899999842


Q ss_pred             c------cccCCh-----------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           68 S------SHELPG-----------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        68 ~------l~~~~~-----------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      .      ++..++                 ..+|.+++++|||||+|++++..-..... ..   .+...+...||..+
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~En-e~---~v~~~l~~~~~~~~  270 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEEN-EF---VIQWALDNFDVELL  270 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGT-HH---HHHHHHHHSSEEEE
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHh-HH---HHHHHHhcCCCEEe
Confidence            1      221111                 47899999999999999998765322111 11   33344555676543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.13  E-value=4.2e-06  Score=70.77  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=69.3

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC---CeEEEeccCCCCC--CCCCc-eeEEEec
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP---QIITQASSLSQLP--VESFS-IDTVLSI   66 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp--~~~~s-fD~V~s~   66 (276)
                      .|.+||+++.|.+.-+..+.             +.|++.|++++...+.   ++.++++|+.++.  +++++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            57889999888875422211             7889999888776664   6899999987653  24678 9999998


Q ss_pred             cccccCCh-HHHHHHH--HHhccCCcEEEEEecC
Q 023870           67 SSSHELPG-DQLLEEI--SRVLKPGGTILIYKKL   97 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei--~rvLKPgG~l~i~~~~   97 (276)
                      ..++ ... ..+++++  .|+|||||.|++....
T Consensus       133 ~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          133 PPFH-FNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CCCC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            7755 344 7889999  7789999999988765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.11  E-value=1.5e-05  Score=65.47  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=75.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-----------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            5 KMQSAVLALSEDKILPVSAVL-----------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-----------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      ..+.+||.++.|.+.-+..+.           +.|++.        ..++.++++|+.+ ++++++||+|+++..+++.+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~   92 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES--------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDT   92 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT--------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc--------ccCCeEEECChhh-hcccCCCCEEEECCCCccCC
Confidence            457799999999875432221           334433        3457889999987 77779999999988877543


Q ss_pred             h----------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           74 G----------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        74 ~----------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      +          ..++.++.+.| |||++++..+....   .    +.+...+..+||..+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~---~----~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR---P----KEVLARLEERGYGTRILK  147 (170)
T ss_dssp             CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC---H----HHHHHHHHHTTCEEEEEE
T ss_pred             ccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC---H----HHHHHHHHHCCCcEEEEE
Confidence            2          47889999999 99999998865321   1    256667889999865543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.10  E-value=3.6e-06  Score=68.91  Aligned_cols=95  Identities=8%  Similarity=-0.045  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp~~~~sfD~V~s~~   67 (276)
                      ...+.+||.++.|.+..+..+.             +.|++.|++++...+.  ++.++.+|+.+ ++...+.||+|++..
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            3578899999999875433222             7888888887766654  48899999876 455557899999986


Q ss_pred             ccccCChHHHHHHHH--HhccCCcEEEEEecCC
Q 023870           68 SSHELPGDQLLEEIS--RVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~--rvLKPgG~l~i~~~~~   98 (276)
                      .++......++..+.  ++|||||.|++.....
T Consensus       109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            654322267778887  9999999999988664

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.09  E-value=4.2e-05  Score=65.16  Aligned_cols=87  Identities=20%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC---CCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp---~~~~sfD~V~s   65 (276)
                      ++.|.+||+++.|.+..+..+.               +.|++.+++++... .++.++++|+....   ...++||+|++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            5678999999999875432222               55666665555433 56899999998732   12458999997


Q ss_pred             ccccccCCh--HHHHHHHHHhccCCcEEEEE
Q 023870           66 ISSSHELPG--DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        66 ~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~   94 (276)
                      ...   .++  ..++.+++++|||||+|++.
T Consensus       150 ~~~---~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVA---QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            654   222  35599999999999999987

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.09  E-value=1.7e-05  Score=66.32  Aligned_cols=87  Identities=11%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .+.+||.++.|.+..+..+.              +.|++.+++++...+.. +.+..+++.+++ +.++||+|++..   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~---  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA---  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec---
Confidence            47899999999987644333              66888888877665543 899999998876 567999999753   


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                       +.+ ..++.+++++|||||++++....
T Consensus       141 -~~~~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          141 -FASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             -SSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             -cCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence             233 78999999999999999988643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.08  E-value=1.1e-05  Score=73.12  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      +++|++||.++.|.+.-+..+               .+.|++.|+++....+. ++.+..+|+...+.+.++||+|++..
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence            578999999999986432222               15777888877765553 48999999988665678999999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++++.     .+++++|||||++++....
T Consensus       153 ~~~~~~-----~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          153 GVDEVP-----ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             BBSCCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred             CHHHHH-----HHHHHhcCCCcEEEEEECC
Confidence            988876     5789999999999998643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.07  E-value=5.1e-06  Score=77.38  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=69.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +..|.+||+|+.|.+.-+..+.            ..|++.|++++...+.  ++.++.+++++++++ ++||+|++....
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence            4678899999999864432222            2567777777766554  389999999999887 899999996655


Q ss_pred             ccCC---h-HHHHHHHHHhccCCcEEEEEec
Q 023870           70 HELP---G-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~---~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +++.   . ..++.+++|+|||||.|++...
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            5543   2 6799999999999999976543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.07  E-value=8.4e-06  Score=68.94  Aligned_cols=92  Identities=9%  Similarity=-0.026  Sum_probs=69.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~~l~   70 (276)
                      .|.+||+++.|.+.-...+.             +.|++.|++++...+. ++.++++|+.+ ++...++||+|++...++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            57889999888865422211             7889999888776664 68999999876 566778999999977655


Q ss_pred             cCChHHHHHHHHH--hccCCcEEEEEecC
Q 023870           71 ELPGDQLLEEISR--VLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~~~~l~ei~r--vLKPgG~l~i~~~~   97 (276)
                      .-....+++++.+  +|||||+|++....
T Consensus       134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          134 RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            3223778888865  59999999988754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.07  E-value=9.7e-06  Score=65.10  Aligned_cols=91  Identities=14%  Similarity=-0.010  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHHHHHHHH--HHhhhh-------CCCCeEEEeccCCCCC--------CCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVLNAIRDLG--DEAVEQ-------CDPQIITQASSLSQLP--------VESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~~m~~~A--~~~~~~-------~~~~v~~~~~d~~~lp--------~~~~sfD~V~s~   66 (276)
                      ++.+.+||.++.|.+.-+.    .+.+..  ..++..       .-.++.+.++|+.+.+        +++++||+|++.
T Consensus        20 ~~~~~~vLd~G~G~G~~~~----~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~   95 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQ----YVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD   95 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHH----HHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCCeEEEeCCCCCHHHH----HHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence            5788999999998854222    222221  011100       0134788899998887        788899999998


Q ss_pred             cccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 SSSHELPG------------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~~l~~~~~------------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..+++...            ..++++++++|||||.+++..+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            88776643            378999999999999999988764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.06  E-value=5.3e-06  Score=68.08  Aligned_cols=94  Identities=14%  Similarity=0.009  Sum_probs=70.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC----CCCCCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQL----PVESFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l----p~~~~sfD~V~s   65 (276)
                      ..+.+||.++.|.+.....+.             +.|++.|++++...+.  ++.++++|+.+.    ++..++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            468899999998875433222             7788888887766553  589999998763    233789999999


Q ss_pred             ccccccCChHHHHHHH--HHhccCCcEEEEEecCC
Q 023870           66 ISSSHELPGDQLLEEI--SRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~l~~~~~~~~l~ei--~rvLKPgG~l~i~~~~~   98 (276)
                      ...++.......+..+  +|+|||||.+++.....
T Consensus       123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            8775533346778888  99999999999987664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.06  E-value=2.5e-05  Score=67.13  Aligned_cols=89  Identities=8%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.|.+||+++.|.+.-...+            .+.|++.|+++....+  .++.+..+++.+..+++.+||+|++..  
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--  166 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV--  166 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence            467899999999875432222            2677888877765555  358899999987554677999999843  


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                         ++ ..++++++++|||||++++..+.
T Consensus       167 ---~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          167 ---REPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             ---SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ---cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence               23 57899999999999999999865

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.06  E-value=1.2e-05  Score=68.46  Aligned_cols=89  Identities=12%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCC------CCeEEEeccCCCCCCCCCceeE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCD------PQIITQASSLSQLPVESFSIDT   62 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~------~~v~~~~~d~~~lp~~~~sfD~   62 (276)
                      ++.|.+||.++.|.+.-...+.               +.|++.++++....+      .++.++.+|+...+...++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            6789999999998864322222               567777777665433      3688999999877666789999


Q ss_pred             EEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           63 VLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        63 V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++...++++     +.+++++|||||+|++....
T Consensus       155 i~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVV-----PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSC-----CHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHH-----HHHHHHhcCCCcEEEEEEec
Confidence            9998877665     46899999999999998764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.05  E-value=3.4e-07  Score=79.06  Aligned_cols=89  Identities=11%  Similarity=-0.048  Sum_probs=72.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .|.+||+++.|.+..+..+.            +.|++.|++++...+.  ++.++++|+.+++ ++++||+|++...+++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence            68899999999875533332            7889999888777765  6999999998877 6789999999988888


Q ss_pred             CCh-HHHHHHHHHhccCCcEEEEEe
Q 023870           72 LPG-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        72 ~~~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ... ...+.+++++|+|||.+++..
T Consensus       157 ~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          157 PDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             GGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             cchhhhHHHHHHhhcCCcceeHHHH
Confidence            776 557888999999999976553

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.03  E-value=7.5e-06  Score=75.07  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||+++.|.+.-+..+.              +.|++.++++....+..+.++.+|+...  .+++||+|+++..+|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFH  272 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCC
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCcc
Confidence            346788999888875433222              6788888888777666677788888654  377999999998887


Q ss_pred             cC-----Ch-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 EL-----PG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~-----~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.     .. ..++++++|+|||||.|++....
T Consensus       273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            52     22 78999999999999999998765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.02  E-value=2.1e-05  Score=66.35  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      ++.+.+||.++.|.+.....+               .+.|++.++++....+. ++.+..+++.......++||+|++..
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence            467899999999876432222               15677777776654443 48888898854322367899999999


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+++++     .+++++|||||++++....
T Consensus       155 ~~~~~~-----~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          155 AGPKIP-----EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             BBSSCC-----HHHHHTEEEEEEEEEEESS
T ss_pred             chHHHH-----HHHHHHcCCCcEEEEEECC
Confidence            988876     4889999999999998865

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.02  E-value=9e-05  Score=64.75  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHH----HHHHHhhhhCCCCeEEEeccCCCCCC---CCCcee
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIR----DLGDEAVEQCDPQIITQASSLSQLPV---ESFSID   61 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~----~~A~~~~~~~~~~v~~~~~d~~~lp~---~~~sfD   61 (276)
                      +++|++||+++.+.+.-...+.               +.|+    +.++++     .++.++++|+.....   ..++||
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccccchhhhccccceE
Confidence            6799999999988864322111               4443    333322     468899999876431   246899


Q ss_pred             EEEeccccccCCh-HH-HHHHHHHhccCCcEEEEEecCCC---CchhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870           62 TVLSISSSHELPG-DQ-LLEEISRVLKPGGTILIYKKLTS---DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~-~l~ei~rvLKPgG~l~i~~~~~~---~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~  131 (276)
                      +|++..+.   ++ .. ++..+.++|||||+|++......   +.. .....+.....|..+||...+.....|.
T Consensus       149 ~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~-~~e~~~~~~~~L~~~gf~~~~~~~l~p~  219 (232)
T 3id6_C          149 VLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKD-PKEIYKTEVEKLENSNFETIQIINLDPY  219 (232)
T ss_dssp             EEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CC-SSSSTTHHHHHHHHTTEEEEEEEECTTT
T ss_pred             EEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCC-HHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            99987653   33 33 44556669999999998853211   100 0001123445677889987776655443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.00  E-value=1.7e-05  Score=72.38  Aligned_cols=89  Identities=18%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||+|+.|.+.-+..+.            ..|++.|++++...+.  ++.++.++++++++++++||+|++....+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            467899999999864322111            2367777777665543  48999999999999889999999875433


Q ss_pred             c---CCh-HHHHHHHHHhccCCcEEEE
Q 023870           71 E---LPG-DQLLEEISRVLKPGGTILI   93 (276)
Q Consensus        71 ~---~~~-~~~l~ei~rvLKPgG~l~i   93 (276)
                      .   ... ..++.++.|+|||||+++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          117 FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            3   233 6889999999999999973

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.99  E-value=2.5e-06  Score=80.57  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             CCCeEEEeccCCCCCCC------CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           40 DPQIITQASSLSQLPVE------SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        40 ~~~v~~~~~d~~~lp~~------~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..++.++++|+.++|+.      +++||+|++.. .|++.+ ..+|++++|+|||||+|++.++.
T Consensus       263 ~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          263 ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            35699999999999987      78999999865 466666 88999999999999999998865

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.99  E-value=5.5e-05  Score=65.68  Aligned_cols=93  Identities=13%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC--------C-CCeEEEeccCCC-CC--CCC
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC--------D-PQIITQASSLSQ-LP--VES   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~--------~-~~v~~~~~d~~~-lp--~~~   57 (276)
                      ++.+..||.++.|.+.-+..+.              +.|++.+++++...        + .++.++.+|+.. ++  ++.
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            3567889999999875432222              66777776655432        3 358999999986 67  788


Q ss_pred             CceeEEEeccccccCC---------hHHHHHHHHHhccCCcEEEEEec
Q 023870           58 FSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ++||.|+..+.-.|..         ...++.++.++|||||.|++.+.
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            9999998765433321         14899999999999999999753

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.98  E-value=4.7e-05  Score=71.16  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             CCcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCC---CCeEEEec-----------------------------------
Q 023870            7 QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCD---PQIITQAS-----------------------------------   48 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~---~~v~~~~~-----------------------------------   48 (276)
                      ..+|++++.+.+.+.-.++..|++..+++....+   +.+.+...                                   
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5778999999987766666667665544432211   22333332                                   


Q ss_pred             -------cCCCCCCCCCceeEEEeccccccCCh---------------------------------------HHHHHHHH
Q 023870           49 -------SLSQLPVESFSIDTVLSISSSHELPG---------------------------------------DQLLEEIS   82 (276)
Q Consensus        49 -------d~~~lp~~~~sfD~V~s~~~l~~~~~---------------------------------------~~~l~ei~   82 (276)
                             +...-.||+++||+|+|++++||+..                                       ..+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   22223578999999999999999873                                       23688889


Q ss_pred             HhccCCcEEEEEecCCCC
Q 023870           83 RVLKPGGTILIYKKLTSD  100 (276)
Q Consensus        83 rvLKPgG~l~i~~~~~~~  100 (276)
                      |.|+|||++++...+.++
T Consensus       213 ~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEEEEEEEEEEEECCC
T ss_pred             HHhCCCCEEEEEEecCCC
Confidence            999999999999887643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.98  E-value=4.2e-06  Score=67.58  Aligned_cols=92  Identities=11%  Similarity=0.042  Sum_probs=68.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCC-C-CC--CCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQL-P-VE--SFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l-p-~~--~~sfD~V~s~~~l   69 (276)
                      .+.+||.++.|.+..+..+.            +.|++.|+++....+.++.++.+|+.+. + ++  .++||+|++...+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence            68899999999875433222            7888888887766555788999998763 3 22  3489999998776


Q ss_pred             ccCChHHHHHHHH--HhccCCcEEEEEecCC
Q 023870           70 HELPGDQLLEEIS--RVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~~~~l~ei~--rvLKPgG~l~i~~~~~   98 (276)
                      + .....+++.+.  ++|||||.+++.....
T Consensus       121 ~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          121 A-MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             T-SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             c-hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            5 22266777777  9999999999988654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.95  E-value=2e-05  Score=71.72  Aligned_cols=90  Identities=16%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC------------CCCeEEEeccCCCC--C
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC------------DPQIITQASSLSQL--P   54 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~------------~~~v~~~~~d~~~l--p   54 (276)
                      ++.|.+||.++.|.+.-...+.               +.|++.|+++....            ..++.+..+|+.++  +
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            5689999999998864322221               66777777766532            24689999999877  5


Q ss_pred             CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           55 VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++++||+|++.....    ..++.+++++|||||+|++..+.
T Consensus       183 ~~~~~fD~V~~~~~~~----~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          183 IKSLTFDAVALDMLNP----HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -----EEEEEECSSST----TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cCCCCeeEEEECCCCH----HHHHHHHHHhcCCCcEEEEEeCC
Confidence            7778999999864322    34789999999999999988864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.94  E-value=1.6e-05  Score=73.08  Aligned_cols=90  Identities=12%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..|.+||.|+.|.+.-+..+.            ..|.+.|++++...+  .++.++.+++++++++ ++||+|++....+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence            478899999999874322221            136677777666555  3589999999998876 5899999987666


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ++..   ...+.+++|+|||||.+++..
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            5543   578889999999999998553

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.94  E-value=3.6e-05  Score=66.19  Aligned_cols=89  Identities=12%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCC-ceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESF-SIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~-sfD~V~s~~~   68 (276)
                      ++.|.+||.++.|.+.-...+             .+.|++.|+++....+. ++.+..+|+ ..++++. .||+|++...
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSB
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCc
Confidence            467889999999876432222             26677888777665553 488888987 4566555 4999999988


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++++.     .+++++|||||++++.....
T Consensus       168 ~~~~~-----~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          168 APKIP-----EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             BSSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             HHHHH-----HHHHHhcCCCcEEEEEEecC
Confidence            88775     37899999999999988653

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.92  E-value=4.5e-05  Score=70.03  Aligned_cols=94  Identities=16%  Similarity=0.040  Sum_probs=72.8

Q ss_pred             CCCCCcEEEEccCCCCcHH---HH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVS---AV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+.+..||++..|.+.-..   .+            .+.|++.|++++...+. .+.+.++|+.+++.+..+||+|+++.
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence            4678899999888875421   11            16788888888877765 58999999999998888899999976


Q ss_pred             ccccCC-------h--HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELP-------G--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~-------~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+.+..       .  ..+++++.++|||||++++.++.
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            543321       1  57899999999999999999865

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.92  E-value=3.3e-05  Score=72.01  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC----CeEEEeccCCCCCCCCCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP----QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~----~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      ..+.+||+++.|.+.-+..+.              +.|++.|++++...+.    ++.+..+|+.+ ++++++||+|+++
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN  299 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence            345789999998874422222              7788888887665442    47889999987 6778899999998


Q ss_pred             cccccC---Ch---HHHHHHHHHhccCCcEEEEEecC
Q 023870           67 SSSHEL---PG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        67 ~~l~~~---~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+|+.   ..   ..++++++++|||||+|++....
T Consensus       300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            887752   22   47899999999999999997654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.91  E-value=2.4e-05  Score=66.68  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             CCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC--CeEEEeccCCC-CCCCC-----Ccee
Q 023870            5 KMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP--QIITQASSLSQ-LPVES-----FSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp~~~-----~sfD   61 (276)
                      ..+.+||.++.|.+.....+               .+.|++.|++++...+.  ++.++++|+.. ++...     ++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            45778999988876432222               27888888887766554  48999999754 34322     7899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++....+++.. ..++..+ ++|||||+|++.+..
T Consensus       137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            9999876666554 5677777 999999999987765

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.87  E-value=1.7e-05  Score=66.07  Aligned_cols=92  Identities=13%  Similarity=0.069  Sum_probs=63.5

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHH---Hhhhh-------CCCCeEEEeccCCCCC------------------
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGD---EAVEQ-------CDPQIITQASSLSQLP------------------   54 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~---~~~~~-------~~~~v~~~~~d~~~lp------------------   54 (276)
                      .++.|.+||+++.|.+.-..    .+.+...   .++-.       ...++.++++|+.+++                  
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~----~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~   94 (201)
T 2plw_A           19 FLKKNKIILDIGCYPGSWCQ----VILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV   94 (201)
T ss_dssp             CCCTTEEEEEESCTTCHHHH----HHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred             CCCCCCEEEEeCCCCCHHHH----HHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhh
Confidence            36789999999999864322    2222211   11110       1124788899998877                  


Q ss_pred             -------CCCCceeEEEeccccccCC----h-H-------HHHHHHHHhccCCcEEEEEecCC
Q 023870           55 -------VESFSIDTVLSISSSHELP----G-D-------QLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        55 -------~~~~sfD~V~s~~~l~~~~----~-~-------~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                             +++.+||+|++...+|+..    + .       .++++++++|||||.|++..+..
T Consensus        95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                   6778999999987776631    2 1       37899999999999999977653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.87  E-value=8.4e-05  Score=66.40  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.+.+||+++.|.+..+..+.              +.|++.|+++....     ..++.++.+|+.. ++...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            467899999988875444332              77888888876432     4568999999865 333467899999


Q ss_pred             eccccccCCh-----HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELPG-----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~~-----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +....++.+.     .+++++++++|||||.|++....
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            8554333222     58999999999999999988643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.85  E-value=6.8e-05  Score=68.30  Aligned_cols=92  Identities=16%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.+.+||+|+.|.+.-+..+.              +.|++.|+++....     ..++.++.+|+.. ++...++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            456789999988865433332              78889888876532     4568999999865 444578999999


Q ss_pred             eccccccCCh-----HHHHHHHHHhccCCcEEEEEec
Q 023870           65 SISSSHELPG-----DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        65 s~~~l~~~~~-----~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +....++.+.     .+++++++++|||||.|++...
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            8654332221     5889999999999999998863

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.85  E-value=4.5e-05  Score=69.74  Aligned_cols=90  Identities=13%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             cEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-CCCeEEEeccCCCC--CCCCCceeEEEecccccc
Q 023870            9 AVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHE   71 (276)
Q Consensus         9 ~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-~~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~   71 (276)
                      +||+|+.|.+.-...+.              +.|++.|+++.... ..++.++.+|+...  .+++++||+|++....++
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~  171 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA  171 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc
Confidence            89999888765433332              77889888876432 45689999998654  355789999998543332


Q ss_pred             -----CChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           72 -----LPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        72 -----~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                           +...+++++++|+|||||+|++.....
T Consensus       172 ~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          172 ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             ccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                 223789999999999999999887643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.84  E-value=4.1e-05  Score=65.98  Aligned_cols=90  Identities=10%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-CCCCceeEEEec
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-VESFSIDTVLSI   66 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~~~~sfD~V~s~   66 (276)
                      ..+.+||.++.|.+.....+.              +.|++.|+++....+.  ++.++.+|+... + ..+++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            467889999988875433222              7888888888776664  599999999764 4 447899999976


Q ss_pred             cccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..   ... ..++++++++|||||+|++.+..
T Consensus       150 ~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          150 AA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             TT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             Cc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            43   333 67999999999999999986543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.84  E-value=6.3e-05  Score=66.99  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      ..+.+||+++.|.+.-+..+.              +.|++.|++....     ...++.++.+|+.. ++...++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            356789999988865433332              7888888876532     24568999999865 444567999999


Q ss_pred             eccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +....++.+     ..+++++++|+|||||.|++....
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            965443322     268999999999999999988644

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.84  E-value=4e-05  Score=71.89  Aligned_cols=95  Identities=18%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             CCcEEEEccCCCCcHHHHHHHHHHHHHHhhhh-----CCCCeEEEeccCC------------------------------
Q 023870            7 QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLS------------------------------   51 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~-----~~~~v~~~~~d~~------------------------------   51 (276)
                      .-++++++.+.+.+.-.++..|++..+++...     ..+.+.+...|+-                              
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            35678899888877666667777766554322     1122333333322                              


Q ss_pred             ---------CCCCCCCceeEEEeccccccCCh-HH------------------------H---------------HHHHH
Q 023870           52 ---------QLPVESFSIDTVLSISSSHELPG-DQ------------------------L---------------LEEIS   82 (276)
Q Consensus        52 ---------~lp~~~~sfD~V~s~~~l~~~~~-~~------------------------~---------------l~ei~   82 (276)
                               .-.||+++||+|+|++++||+.. +.                        +               |+-.+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     24578999999999999999764 21                        1               44558


Q ss_pred             HhccCCcEEEEEecCCCCc
Q 023870           83 RVLKPGGTILIYKKLTSDK  101 (276)
Q Consensus        83 rvLKPgG~l~i~~~~~~~~  101 (276)
                      |.|+|||++++...+.++.
T Consensus       213 ~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTT
T ss_pred             HHhccCCeEEEEEecCCCc
Confidence            9999999999999887654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.82  E-value=5.7e-05  Score=64.51  Aligned_cols=89  Identities=10%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH--------------------HHHHHHHHHHhhhhCC------CCeEEEeccCCCCCCC
Q 023870            3 TGKMQSAVLALSEDKILPVSAV--------------------LNAIRDLGDEAVEQCD------PQIITQASSLSQLPVE   56 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v--------------------~~~m~~~A~~~~~~~~------~~v~~~~~d~~~lp~~   56 (276)
                      .++.|.+||.++.|.+.-...+                    .+.|++.|+++....+      .++.+..+|+.. +++
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~  159 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP  159 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence            3678999999998876432211                    1456677776654432      458899999877 555


Q ss_pred             C-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           57 S-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        57 ~-~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      . ++||+|++...++++.     .++++.|||||+|++....
T Consensus       160 ~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEESC
T ss_pred             cCCCccEEEECCchHHHH-----HHHHHHhcCCCEEEEEEec
Confidence            5 7899999998888764     7899999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.80  E-value=4.9e-05  Score=64.68  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH-------------------HHHHHHHHHHhhhhCC------CCeEEEeccCCCCC---
Q 023870            3 TGKMQSAVLALSEDKILPVSAV-------------------LNAIRDLGDEAVEQCD------PQIITQASSLSQLP---   54 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v-------------------~~~m~~~A~~~~~~~~------~~v~~~~~d~~~lp---   54 (276)
                      .++.|.+||.++.|.+.....+                   .+.|++.|+++....+      .++.++.+|+....   
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            3678999999998876432211                   1566777777665544      35899999998765   


Q ss_pred             -CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           55 -VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        55 -~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                       +..++||+|++...++++     +.+++++|||||+|++..+.
T Consensus       157 ~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASEL-----PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHCCEEEEEECSBBSSC-----CHHHHHHEEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEEEcc
Confidence             667899999998887765     47889999999999988764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.80  E-value=1.1e-05  Score=68.78  Aligned_cols=91  Identities=11%  Similarity=-0.010  Sum_probs=69.8

Q ss_pred             CCCCCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+.++||+++.|.+.-+-.              +.+.|++++++++...+....+..++.... .+..+||+|++...+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML  125 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence            46688999999998633222              238999999999887776533333555443 567899999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEe
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      |++.+ +..+..+++.|||||.|+-..
T Consensus       126 HlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          126 PVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             HhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            99954 667779999999999998776

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.80  E-value=5.6e-05  Score=71.94  Aligned_cols=92  Identities=15%  Similarity=0.013  Sum_probs=63.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHH-------HHhhhhCC---CCeEEEeccCCCC--CC--
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLG-------DEAVEQCD---PQIITQASSLSQL--PV--   55 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A-------~~~~~~~~---~~v~~~~~d~~~l--p~--   55 (276)
                      ++.|++||+++.|.+.-+..+.              +.|++.|       ++++...+   .++.+++++....  ++  
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~  319 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  319 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence            5678999999999875422221              2244444       77766655   4588887754322  23  


Q ss_pred             CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           56 ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        56 ~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ..++||+|++++.+ +.++ ..+|++++|+|||||+|++.+.
T Consensus       320 ~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          320 LIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             HGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence            25789999987655 3344 7789999999999999998864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.80  E-value=7e-05  Score=68.80  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCC--CCCCCceeE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDT   62 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~l--p~~~~sfD~   62 (276)
                      .+.+.+||+|+.|.+.-+..+.              +.|++.|+++...     ...++.++.+|+...  .+++++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            3566789999988875433322              7888888887643     245689999998653  245679999


Q ss_pred             EEeccccccC--C---hHHHHHHHHHhccCCcEEEEEe
Q 023870           63 VLSISSSHEL--P---GDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        63 V~s~~~l~~~--~---~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      |++....++.  .   ...++++++|+|||||.|++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9986542211  1   2689999999999999999874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.79  E-value=2.2e-05  Score=67.66  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=65.2

Q ss_pred             CCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC---CeEEEeccCCCC-C-CCCCceeEEEe
Q 023870            6 MQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP---QIITQASSLSQL-P-VESFSIDTVLS   65 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l-p-~~~~sfD~V~s   65 (276)
                      .+.+||.++.|.+.....+               .+.|++.|+++....+.   ++.++.+|+.++ + +++++||+|++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            3458999988876432222               27788888888776554   499999988654 3 44789999998


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ....   .. ..++++++|+|||||+|++.+..
T Consensus       136 d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          136 QVSP---MDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             CCCT---TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             cCcH---HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6532   23 67899999999999999986543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.78  E-value=4.4e-05  Score=66.56  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CCCC--CCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LPVE--SFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp~~--~~sfD~V~   64 (276)
                      ..+.+||.|+.|.+.....+.               +.|++.|++++...+.  ++.++.+|+.. ++..  .++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            467899999988865432222               7788888887766554  48999999865 4433  34899999


Q ss_pred             eccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +...   ... ..++++++++|||||+|++.+..
T Consensus       142 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          142 IDAD---KPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ECSC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            8643   333 67999999999999999988754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.77  E-value=0.00022  Score=67.79  Aligned_cols=95  Identities=19%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s   65 (276)
                      ++.|.+||++..|.+.-...+.               +.+++.+++++...+. ++.++.+|+..++  +++++||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            4678899999888764322222               5567777777666665 5889999998876  66688999996


Q ss_pred             c------cccccCCh-----------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 I------SSSHELPG-----------------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~------~~l~~~~~-----------------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .      ..++..++                 ..+|.+++++|||||+|++++...
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2      12222221                 468999999999999999988654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.76  E-value=6.2e-05  Score=64.45  Aligned_cols=91  Identities=14%  Similarity=0.102  Sum_probs=67.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-CCC--CCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-PVE--SFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p~~--~~sfD~V~s   65 (276)
                      ..+.+||.++.|.+.....+.              +.|++.|+++....+.  ++.++.+++... +..  +++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            467899999988764422222              6777888877765554  489999998764 443  578999998


Q ss_pred             ccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ....+  ....+++++.++|||||+|++.+..
T Consensus       133 ~~~~~--~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          133 DAAKG--QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EGGGS--CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CCCHH--HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            76543  1278999999999999999998654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.75  E-value=3.5e-05  Score=70.01  Aligned_cols=93  Identities=15%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh------CCCCeEEEeccCCC-CCCCCCceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ------CDPQIITQASSLSQ-LPVESFSIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~------~~~~v~~~~~d~~~-lp~~~~sfD~V   63 (276)
                      +.+.+||+|+.|.+.-+..+.              +.|++.|+++...      ...++.++.+|+.. ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            456789999988875433332              7788888876543      14568999999876 45557899999


Q ss_pred             Eecccccc---CC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           64 LSISSSHE---LP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        64 ~s~~~l~~---~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++....++   -+     ..+++++++|+|||||.|++....
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            99766554   21     268999999999999999987543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.74  E-value=7.6e-05  Score=67.56  Aligned_cols=93  Identities=11%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.+.+||+|+.|.+.-+..+.              +.|++.|+++...     ...++.++.+|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            567899999988865433332              7888888876543     24568999999865 455578999999


Q ss_pred             eccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +....++.+     ..+++++++|+|||||.|++....
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            865443322     257899999999999999988744

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.73  E-value=4.5e-05  Score=73.46  Aligned_cols=89  Identities=12%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||+|+.|.+..+..+.            ..|++.|++++...+.  ++.++.+++.+++++ ++||+|++....+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchH
Confidence            457899999999875422221            2278888887766554  599999999998775 5899999977655


Q ss_pred             cCC-h--HHHHHHHHHhccCCcEEEEE
Q 023870           71 ELP-G--DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        71 ~~~-~--~~~l~ei~rvLKPgG~l~i~   94 (276)
                      ++. .  ...+.+++++|||||++++.
T Consensus       236 ~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          236 MLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            543 2  56777889999999999853

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.71  E-value=0.00011  Score=65.02  Aligned_cols=95  Identities=8%  Similarity=0.054  Sum_probs=68.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCC----CCCceeEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPV----ESFSIDTV   63 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~----~~~sfD~V   63 (276)
                      ++.|.+||++..|.+.-...+.               +.|++.+++++...+. ++.++.+|+..++.    ..++||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            4678899999888764322222               5677777777766665 58899999987765    36789999


Q ss_pred             Eecccccc------------------CCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           64 LSISSSHE------------------LPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        64 ~s~~~l~~------------------~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++......                  ... ..++.+++++|||||+|++++...
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            98532211                  122 679999999999999999987653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.69  E-value=0.00014  Score=65.44  Aligned_cols=93  Identities=13%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.+.+||+++.|.+.-+..+.              +.|++.|+++...     ...++.++.+|+.. ++...++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            356789999988764333222              7788888776532     14568999999765 455567899999


Q ss_pred             eccccccCC------hHHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELP------GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~------~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +....+++.      ..+++++++++|||||.|++....
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            854333221      268999999999999999998544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.69  E-value=0.00025  Score=64.63  Aligned_cols=93  Identities=17%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.+.+||+++.|.+.-+..+.              +.|++.|+++...     ...++.++.+|+.. ++..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            456789999988865433222              7888888887643     13568999999865 344467899999


Q ss_pred             eccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +....++-+     ..+++++++++|||||.|++....
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            865322211     168999999999999999997644

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.68  E-value=0.00015  Score=64.36  Aligned_cols=92  Identities=11%  Similarity=0.040  Sum_probs=70.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.|.+||++..|.+.-+..+.              +.|++.|++++...+. ++.++.+|+..++. .++||+|++..
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence            36788999999998875422221              7788888887766554 58899999988754 67899999876


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..   ....++.++.+.|||||.++++.+..
T Consensus       195 p~---~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          195 VH---KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CS---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cc---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            53   22678999999999999999998764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.65  E-value=4.3e-05  Score=63.20  Aligned_cols=92  Identities=15%  Similarity=0.002  Sum_probs=59.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHH----------Hhhh------hC-CCCeEEE-eccCCCCC--------CC
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGD----------EAVE------QC-DPQIITQ-ASSLSQLP--------VE   56 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~----------~~~~------~~-~~~v~~~-~~d~~~lp--------~~   56 (276)
                      .++.|.+||+++.|.+.-+.    .+.+...          .++-      .. -..+.++ .+|+...+        ++
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~----~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQ----VAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHH----HHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCCCEEEEeCCCCCHHHH----HHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            46789999999999864222    2222211          1110      01 1236777 88876653        34


Q ss_pred             CCceeEEEecccccc----CCh--------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           57 SFSIDTVLSISSSHE----LPG--------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~----~~~--------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++||+|++...+++    ..+        ..++++++|+|||||+|++..+..
T Consensus        95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            568999998654433    222        278999999999999999998764

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.65  E-value=5.8e-05  Score=63.60  Aligned_cols=87  Identities=9%  Similarity=0.036  Sum_probs=63.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-CCCCCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-PVESFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p~~~~sfD~V~s~~   67 (276)
                      .+.+||.++.|.+.....+.               +.|++.|+++....+.  ++.++.+++... +..++ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            56788999888764432222               6778888777655443  488999988653 54456 99999864


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .   ... ..++++++++|||||+|++.+.
T Consensus       135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          135 D---VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             T---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             C---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            2   233 7899999999999999998664

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.63  E-value=0.00034  Score=66.07  Aligned_cols=95  Identities=14%  Similarity=0.101  Sum_probs=68.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~   67 (276)
                      .++|.+||++..+.+.-...+.              +.+++.+++++...+..+.++.+|+..++  ++.++||+|++..
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            4678999999888864433333              34466677776666667888999998886  6678999999622


Q ss_pred             ------ccccCCh-----------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 ------SSHELPG-----------------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ------~l~~~~~-----------------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                            .++..++                 ..++.+++++|||||+|++++-+-
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                  2222222                 378999999999999999988543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.59  E-value=0.00045  Score=64.03  Aligned_cols=110  Identities=15%  Similarity=0.026  Sum_probs=79.0

Q ss_pred             CCCCCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+.|..||++..|.+.-+..              +.+.|++.|++++...+.  .+.+.++|+.++++++++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            35788899998887643221              228889999988877776  68999999999999889999999976


Q ss_pred             cccc-------CCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870           68 SSHE-------LPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        68 ~l~~-------~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      .+..       +..  ..+++++.|+|  +|.+++.....          ..+.+.+...||.....
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~----------~~~~~~~~~~G~~~~~~  349 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK----------KAIEEAIAENGFEIIHH  349 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH----------HHHHHHHHHTTEEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH----------HHHHHHHHHcCCEEEEE
Confidence            5432       112  56888899999  56665555431          14455677889986543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.59  E-value=7.6e-05  Score=63.29  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-CCC----Ccee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-VES----FSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~~~----~sfD   61 (276)
                      ..+.+||.++.|.+.....+.               +.|++.|+++....+.  ++.++++++... + +..    ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            467789999988865432222               7788888887766554  389999998543 3 221    7999


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++...   ... ..++.+++++|||||+|++.+..
T Consensus       143 ~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          143 LIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9996542   233 77999999999999999998764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.57  E-value=5.9e-05  Score=68.11  Aligned_cols=113  Identities=13%  Similarity=-0.026  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEEccCCCCc---HHHHHHHHHHHHH--Hhhhh-----CCCCeEE-EeccCCCCCCCCCceeEEEecccccc
Q 023870            3 TGKMQSAVLALSEDKILP---VSAVLNAIRDLGD--EAVEQ-----CDPQIIT-QASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~---~~~v~~~m~~~A~--~~~~~-----~~~~v~~-~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .++.|++||+++.|.+..   ...+   +.++..  .++-.     .-.++.+ +++|+.+++++ ++||+|++....++
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs~~---~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~  135 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGTAV---LRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPR  135 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHHH---HHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHHHH---HHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCccc
Confidence            468899999999965211   1111   111111  11100     0013668 99999988765 68999999654322


Q ss_pred             -----------CCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           72 -----------LPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 -----------~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                                 ... ..++++++|+|||||+|++..+......       .+...+...||..++..
T Consensus       136 ~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~-------~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          136 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNA-------DLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             ---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCH-------HHHHHHTTEEEEEEEEE
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHH-------HHHHHHHHcCCcEEEEE
Confidence                       111 4799999999999999999886643222       44456777888765543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.55  E-value=9.1e-05  Score=62.78  Aligned_cols=91  Identities=10%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             CCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-CC---CCceeE
Q 023870            5 KMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP--QIITQASSLSQL-P-VE---SFSIDT   62 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~~---~~sfD~   62 (276)
                      ..+.+||.++.|.+.....+               .+.|++.|+++....+.  ++.++.+|+... + ++   ..+||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            46788999988876442222               27788888887766554  489999998643 2 22   267999


Q ss_pred             EEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           63 VLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        63 V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++.....+  ...++++++++|||||.|++.+..
T Consensus       137 v~~d~~~~~--~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          137 IFIDADKQN--NPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             EEECSCGGG--HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             EEEcCCcHH--HHHHHHHHHHhcCCCcEEEEeCCC
Confidence            998654221  168999999999999999987654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.55  E-value=0.00013  Score=66.83  Aligned_cols=116  Identities=11%  Similarity=0.016  Sum_probs=75.4

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC---CeEEEeccCCCCCC----CCCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP---QIITQASSLSQLPV----ESFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp~----~~~sfD~V~s   65 (276)
                      ..|.+||++..|.+.-+..+            .+.|++.|++++...+.   ++.++++|+.++..    ...+||+|++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            35779999998887542222            27888888887765543   38999999876532    1568999998


Q ss_pred             cccc----------ccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           66 ISSS----------HELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        66 ~~~l----------~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      ....          ++..+ ..++.++.++|||||.|++........ ......+.+...+..+|+.
T Consensus       232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~-~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA-SFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS-CHHHHHHHHHHHTTTSCSE
T ss_pred             CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC-CHHHHHHHHHHHHHHcCCe
Confidence            4321          12233 689999999999999988776553221 1111122444455667775

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.50  E-value=0.00052  Score=59.88  Aligned_cols=114  Identities=15%  Similarity=0.046  Sum_probs=83.4

Q ss_pred             CCCCCCCcEEEEccCCCC-cHH-------------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870            2 DTGKMQSAVLALSEDKIL-PVS-------------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~-~~~-------------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      ..++.|.+|++|+.|.+. ++.             ++.+.+++.|++++...+.  ++.+.++|+.+...+.+.||+|+.
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence            357889999999888863 322             1127888999988877765  499999999876655558999875


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ....-  .. ..++.+..+.|+++|+|+++....         ...+++.|..+||.-++..
T Consensus        97 aGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~~---------~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           97 CGMGG--RLIADILNNDIDKLQHVKTLVLQPNNR---------EDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             EEECH--HHHHHHHHHTGGGGTTCCEEEEEESSC---------HHHHHHHHHHTTEEEEEEE
T ss_pred             eCCch--HHHHHHHHHHHHHhCcCCEEEEECCCC---------hHHHHHHHHHCCCEEEEEE
Confidence            43211  11 568888999999999999887541         1267788999999876544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.50  E-value=0.0015  Score=56.34  Aligned_cols=89  Identities=10%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCC---CCC---CCceeEE
Q 023870            6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP--QIITQASSLSQL---PVE---SFSIDTV   63 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~l---p~~---~~sfD~V   63 (276)
                      .+.+||+++.|.+.-...+              .+.|++.|++++...+.  ++.++++|+.+.   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            5779999999987432211              17888999888766554  389999998762   455   3689999


Q ss_pred             EeccccccCC---------------h-HHHHHHHHHhccCCcEEEEE
Q 023870           64 LSISSSHELP---------------G-DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        64 ~s~~~l~~~~---------------~-~~~l~ei~rvLKPgG~l~i~   94 (276)
                      +++..+++..               + ..++.+++|+|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9985554332               1 24567778888888776544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.47  E-value=5.9e-05  Score=73.89  Aligned_cols=92  Identities=11%  Similarity=0.033  Sum_probs=73.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC-CCeEEEeccCCCC--CCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD-PQIITQASSLSQL--PVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~-~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l   69 (276)
                      ..+.+||+|+.|.+.-+..|.            +.|++.|+.++...+ .++.|.+++++++  ++.+++||+|++..++
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            456799999999986544443            888999988776655 5799999999988  5778899999999999


Q ss_pred             ccCChH---HHHHHHHHhccCCcEEEEEec
Q 023870           70 HELPGD---QLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~~~---~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +|+++.   ..+..+++.|+++|+.++...
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence            999872   334567788889888777654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.45  E-value=0.00028  Score=62.98  Aligned_cols=87  Identities=15%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ++.+++||.++.|.+.-...+.            +.|++.++++....+  .++.++++|+..++++  +||+|+++..+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy  103 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY  103 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCc
Confidence            4678899999999886544333            778888887765443  3589999999988876  79999998776


Q ss_pred             ccCCh--HHHH--------------HHH--HHhccCCcEEE
Q 023870           70 HELPG--DQLL--------------EEI--SRVLKPGGTIL   92 (276)
Q Consensus        70 ~~~~~--~~~l--------------~ei--~rvLKPgG~l~   92 (276)
                      ++..+  ..++              +|+  +++|||||.++
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          104 QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            66443  2333              233  36899999875

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.45  E-value=0.00066  Score=60.26  Aligned_cols=118  Identities=12%  Similarity=0.034  Sum_probs=72.4

Q ss_pred             CCCCcEEEEccCCCCcHH-------------HH-HHHHHHHHHHhh-----hhCCC------CeEEEeccCCCC--CC--
Q 023870            5 KMQSAVLALSEDKILPVS-------------AV-LNAIRDLGDEAV-----EQCDP------QIITQASSLSQL--PV--   55 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~-------------~v-~~~m~~~A~~~~-----~~~~~------~v~~~~~d~~~l--p~--   55 (276)
                      ..|.+||.++.|.+..+.             ++ .+.|++.|++++     ...+.      ++.+...+..+.  .+  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467889999888764321             22 367788887766     33222      466664443331  12  


Q ss_pred             --CCCceeEEEeccccccCCh-HHHHHHHHHhcc---C--CcEEEEEecCCCCchhHHHHHHHHHHHHHHCC-Ccchh
Q 023870           56 --ESFSIDTVLSISSSHELPG-DQLLEEISRVLK---P--GGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ  124 (276)
Q Consensus        56 --~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLK---P--gG~l~i~~~~~~~~~~~~~~~~~l~~~l~laG-F~~v~  124 (276)
                        +..+||+|++...+++.+. ..+++++.++||   |  ||++++.......  .+......+...+..+| |....
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~--~~~~~~~~~~~~l~~~G~f~v~~  233 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP--HLAERDLAFFRLVNADGALIAEP  233 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC----------CTHHHHHHHHSTTEEEEE
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec--ccchhHHHHHHHHHhcCCEEEEE
Confidence              4678999999888888776 889999999999   9  9988765432110  00011123445677889 87543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.45  E-value=0.00028  Score=65.94  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc--
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS--   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~--   68 (276)
                      .|..||+|+.|.++-+ -+.             ..|.+.|++.+...+.  .|.++.++++.+.++ +.||+|++...  
T Consensus        83 ~~k~VLDvG~GtGiLs-~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~  160 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILS-IFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY  160 (376)
T ss_dssp             TTCEEEEETCTTSHHH-HHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred             CCCEEEEeCCCccHHH-HHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence            5788999999986431 111             2256667766655543  499999999999887 68999998433  


Q ss_pred             -cccCCh-HHHHHHHHHhccCCcEEEE
Q 023870           69 -SHELPG-DQLLEEISRVLKPGGTILI   93 (276)
Q Consensus        69 -l~~~~~-~~~l~ei~rvLKPgG~l~i   93 (276)
                       +.+-.. ..++....|.|||||.++-
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccchhhhHHHHHHhhCCCCceECC
Confidence             222222 7888889999999999863

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.44  E-value=0.0025  Score=52.95  Aligned_cols=106  Identities=12%  Similarity=0.003  Sum_probs=74.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..|.+||.++.|.+.-...+.             +.|++.++++....+.++.++++|+.+++   .+||+|++...+++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS  124 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence            468899999998875432222             77888888877666667899999998875   48999999888777


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ...   ..+++++.++|  ||.+++. ...   .   ...+.+...+...||..
T Consensus       125 ~~~~~~~~~l~~~~~~l--~~~~~~~-~~~---~---~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          125 QRKHADRPFLLKAFEIS--DVVYSIH-LAK---P---EVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             SSTTTTHHHHHHHHHHC--SEEEEEE-ECC---H---HHHHHHHHHHHHTTEEE
T ss_pred             ccCCchHHHHHHHHHhc--CcEEEEE-eCC---c---CCHHHHHHHHHHCCCeE
Confidence            652   68899999999  5544433 211   1   11224555677788853

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.44  E-value=0.0003  Score=63.47  Aligned_cols=113  Identities=10%  Similarity=0.020  Sum_probs=68.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEE-EeccCCCCC---CCCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIIT-QASSLSQLP---VESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~-~~~d~~~lp---~~~~sfD~V~s~~~   68 (276)
                      .|..||+++.|.+.-...+.             ..|++.+.++    ..++.. ...++..++   ++..+||+|++..+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s  160 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS  160 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcccceecccCceecchhhCCCCCCCEEEEEee
Confidence            57789999999874322221             3344332211    123322 223443333   34557999998777


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEE---ecCCC--------Cch-h--HHHHHHHHHHHHHHCCCcchh
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIY---KKLTS--------DKG-D--VDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~---~~~~~--------~~~-~--~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ++++  ..+|.+++|+|||||+|++.   .+..+        ... .  -+...+.+...+..+||....
T Consensus       161 f~sl--~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~  228 (291)
T 3hp7_A          161 FISL--NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG  228 (291)
T ss_dssp             SSCG--GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             HhhH--HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            6654  67999999999999999987   22211        100 0  123455677788999998544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.43  E-value=0.00012  Score=63.83  Aligned_cols=90  Identities=12%  Similarity=0.050  Sum_probs=63.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-CCC-----CCcee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-PVE-----SFSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p~~-----~~sfD   61 (276)
                      ..+.+||.++.|.+.....+.               +.|++.|+++....+.  ++.++++|+... +..     .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            356789999988875433232               3444555665555443  589999998654 321     57999


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++...   ... ..++++++++|||||+|++.+..
T Consensus       139 ~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          139 FIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             EEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            9998653   233 67899999999999999997654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.43  E-value=0.00068  Score=65.21  Aligned_cols=94  Identities=11%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             CCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCC-CCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPV-ESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~-~~~sfD~V~s~~   67 (276)
                      +.|.+||++..+.+.-...+               .+.|++.+++++...+. ++.++++|+..++. ..++||+|++..
T Consensus       116 ~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          116 NAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence            38899999988775321111               26777888777766555 58899999988764 567899999721


Q ss_pred             ------cccc-------CC--------h--HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 ------SSHE-------LP--------G--DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ------~l~~-------~~--------~--~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                            .++.       +.        .  ..+|.+++++|||||+|++++-+-
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                  1111       11        1  368999999999999999987653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.43  E-value=0.0002  Score=63.74  Aligned_cols=92  Identities=11%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh----h-------CCCCeEEEeccCCC-CCCCCCc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE----Q-------CDPQIITQASSLSQ-LPVESFS   59 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~----~-------~~~~v~~~~~d~~~-lp~~~~s   59 (276)
                      +.+.+||+++.|.+.-+..+.             +.|++.|+++..    -       ...++.++.+|+.. ++. +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            456789999988764333222             778888887661    1       23568899998754 333 678


Q ss_pred             eeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           60 IDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        60 fD~V~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ||+|++....++.+     ..+++++++++|+|||.|++....
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99999865543221     267899999999999999987543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.40  E-value=0.00014  Score=65.03  Aligned_cols=93  Identities=18%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHH----------HHHHHHHhh-h--hCCCCeEEE--eccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNA----------IRDLGDEAV-E--QCDPQIITQ--ASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~----------m~~~A~~~~-~--~~~~~v~~~--~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|.+||+++.|.+.-...+...          |...++++. .  ..+.++.++  ++|+..+|  +++||+|++..
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~  156 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI  156 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence            3578999999998886432211111          111111110 0  011157888  88998876  78999999976


Q ss_pred             ccccCC----h-H---HHHHHHHHhccCCc--EEEEEecCC
Q 023870           68 SSHELP----G-D---QLLEEISRVLKPGG--TILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~----~-~---~~l~ei~rvLKPgG--~l~i~~~~~   98 (276)
                      + ++..    + .   .+|.+++|+|||||  .|++..+.+
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~  196 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP  196 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence            6 3322    1 1   37899999999999  999988764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.38  E-value=0.00031  Score=60.40  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCC----CCCCC--Ccee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQ----LPVES--FSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~----lp~~~--~sfD   61 (276)
                      ..+.+||.++.|.+.....+.               +.+++.|+++....+.  ++.++.+++.+    ++..+  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            356789999888764322222               6777888776655444  48899898643    33334  7899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++...   ..+ ..++.++.++|||||+|++.+..
T Consensus       151 ~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          151 LIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9997653   233 78999999999999999997654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.37  E-value=0.00011  Score=63.92  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=61.6

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhh----CCCCeEEEe-ccCCCCCCCCCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQ----CDPQIITQA-SSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~----~~~~v~~~~-~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .|.+||+|+.|.+.-...+.             +.|++.|+++...    ...++.+.. .++....+...+||++++..
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence            46789999999875432222             3344444332211    011122222 22222123445666665543


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEec---CCCC--------c-hh--HHHHHHHHHHHHHHCCCcchh
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKK---LTSD--------K-GD--VDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~---~~~~--------~-~~--~~~~~~~l~~~l~laGF~~v~  124 (276)
                             ..++++++|+|||||+|++...   ....        . ..  -....+.+...+..+||....
T Consensus       117 -------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~  180 (232)
T 3opn_A          117 -------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG  180 (232)
T ss_dssp             -------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred             -------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence                   5789999999999999998731   1110        0 00  112345677889999998644

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.37  E-value=0.00028  Score=60.66  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC------------
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP------------   54 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp------------   54 (276)
                      ..+.+||.++.|.+.....+.               +.|++.|+++....+.  ++.+..+++.. ++            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            467899999988764322222               6677778777665544  38888888754 22            


Q ss_pred             --CCC--CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           55 --VES--FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        55 --~~~--~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                        |++  ++||+|++....   .. ..++.+++++|||||+|++.+.
T Consensus       139 ~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence              232  789999987432   23 6889999999999999999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.36  E-value=0.00019  Score=62.65  Aligned_cols=89  Identities=11%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-C-----CCCce
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-V-----ESFSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~-----~~~sf   60 (276)
                      ..+.+||.|+.+.+.....+.               +.|++.|+++....+.  ++.++.+++... + +     +.++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            356789999888765432222               5677888887766654  589999988653 4 2     26799


Q ss_pred             eEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           61 DTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        61 D~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      |+|++...   ... ..++.+++++|||||+|++.+.
T Consensus       158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            99998643   233 7899999999999999998764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.31  E-value=0.00021  Score=60.63  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC--CCCC----Ccee
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL--PVES----FSID   61 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l--p~~~----~sfD   61 (276)
                      ..+.+||.++.|.+.....+.               +.|++.|+++....+.  ++.++.+++...  .+..    ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            467789999888764432222               6677888777665553  589999987543  2222    7899


Q ss_pred             EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|++...   ... ..++.++.++|||||.+++.+..
T Consensus       148 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          148 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            9998653   223 68999999999999999997643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.29  E-value=0.0004  Score=64.49  Aligned_cols=52  Identities=15%  Similarity=0.066  Sum_probs=42.7

Q ss_pred             cCCCCCCCCCceeEEEeccccccCCh-H---------------------------------HHHHHHHHhccCCcEEEEE
Q 023870           49 SLSQLPVESFSIDTVLSISSSHELPG-D---------------------------------QLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        49 d~~~lp~~~~sfD~V~s~~~l~~~~~-~---------------------------------~~l~ei~rvLKPgG~l~i~   94 (276)
                      +...-.||+++||+|+|++++||+.. +                                 .+|+..++.|+|||++++.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            34446799999999999999999764 2                                 2388889999999999999


Q ss_pred             ecCCCC
Q 023870           95 KKLTSD  100 (276)
Q Consensus        95 ~~~~~~  100 (276)
                      ..+.++
T Consensus       209 ~~gr~~  214 (359)
T 1m6e_X          209 ILGRRS  214 (359)
T ss_dssp             EEECSS
T ss_pred             EecCCC
Confidence            887654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.29  E-value=0.0011  Score=55.00  Aligned_cols=81  Identities=6%  Similarity=-0.059  Sum_probs=57.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+.-+..+.             +.|++.|+++..    ++.++++|+..++   ++||+|++...+|+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~---~~~D~v~~~~p~~~  122 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS---GKYDTWIMNPPFGS  122 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC---CCeeEEEECCCchh
Confidence            467899999999875422221             678888877653    6789999998875   68999999998888


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEE
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      +..   ..+++++.++|  |+.+++.
T Consensus       123 ~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          123 VVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             -----CHHHHHHHHHHE--EEEEEEE
T ss_pred             ccCchhHHHHHHHHHhc--CcEEEEE
Confidence            864   67999999999  5544443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.27  E-value=0.0011  Score=58.32  Aligned_cols=114  Identities=13%  Similarity=0.073  Sum_probs=82.1

Q ss_pred             CCCCCCCcEEEEccCCCC-cHH-------------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870            2 DTGKMQSAVLALSEDKIL-PVS-------------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~-~~~-------------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      +.++.|.+||+|+.|.+. ++.             ++.+.+++.|++++...+.  ++.+.++|+.+...+.+.||+|++
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence            357889999999888863 221             1127888999888877765  489999998776554456999886


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ....-  .. ..++.+..+.|+++|+|+++-...     .    ..+++.|..+||.-++..
T Consensus        97 agmGg--~lI~~IL~~~~~~L~~~~~lIlq~~~~-----~----~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           97 AGMGG--TLIRTILEEGAAKLAGVTKLILQPNIA-----A----WQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             EEECH--HHHHHHHHHTGGGGTTCCEEEEEESSC-----H----HHHHHHHHHHTEEEEEEE
T ss_pred             eCCch--HHHHHHHHHHHHHhCCCCEEEEEcCCC-----h----HHHHHHHHHCCCEEEEEE
Confidence            43211  11 567888999999999999987531     1    267778999999865543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.25  E-value=0.00031  Score=58.99  Aligned_cols=91  Identities=13%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhh-------CCCCeEEEeccCCCCCCC-----------CCceeEEE
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQ-------CDPQIITQASSLSQLPVE-----------SFSIDTVL   64 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~-------~~~~v~~~~~d~~~lp~~-----------~~sfD~V~   64 (276)
                      .++.|++||+++.|.+.-.    ..+.+. ..++-.       ...++.++++|+.+.+..           .++||+|+
T Consensus        22 ~~~~g~~VLDlG~G~G~~s----~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl   96 (191)
T 3dou_A           22 VVRKGDAVIEIGSSPGGWT----QVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV   96 (191)
T ss_dssp             CSCTTCEEEEESCTTCHHH----HHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred             CCCCCCEEEEEeecCCHHH----HHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence            4688999999999886422    112111 111110       112478899999886521           14999999


Q ss_pred             eccccccC----Ch--------HHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISSSHEL----PG--------DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~l~~~----~~--------~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.......    .+        ..++..+.++|||||.|++..+..
T Consensus        97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            96532211    11        467888999999999999988753

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.25  E-value=0.0049  Score=55.63  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh------hCCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE------QCDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~------~~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      .-.+||+|+.|.+.-++.+.              +.+++.+++...      ..++++..+.+|+-. +.-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            34689999998876666555              777888876542      235678988898864 445678999999


Q ss_pred             eccc-----cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISS-----SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~-----l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .=..     ...+-..++++.++|+|+|||.++.+..++
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp  201 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC  201 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence            7332     112234789999999999999999876544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.23  E-value=0.0003  Score=60.91  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=39.7

Q ss_pred             EEeccCCCCCC-----CCCceeEEEeccccccCCh----------HHHHHHHHHhccCCcEEEEEecC
Q 023870           45 TQASSLSQLPV-----ESFSIDTVLSISSSHELPG----------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        45 ~~~~d~~~lp~-----~~~sfD~V~s~~~l~~~~~----------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.++|+.+...     ...+||+|+++..++....          ..++++++++|||||+|++....
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            88899876321     4458999999765543321          58999999999999999985443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.21  E-value=0.00051  Score=59.38  Aligned_cols=89  Identities=11%  Similarity=0.050  Sum_probs=65.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-C-----CCCce
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-V-----ESFSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~-----~~~sf   60 (276)
                      ..+.+||.++.+.+.....+.               +.|++.|+++....+.  ++.++.+|+... + +     +.++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            356789999888875433232               6678888887766655  488999988653 3 2     25789


Q ss_pred             eEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           61 DTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        61 D~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      |+|++...   ... ..++++++++|||||.|++.+.
T Consensus       149 D~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          149 DFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99997632   223 7899999999999999998764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.20  E-value=0.00067  Score=65.05  Aligned_cols=95  Identities=20%  Similarity=0.083  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCC-CCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-~~~~sfD~V~s~~   67 (276)
                      ++.|.+||++..+.+.-...               +.+.|++.+++++...+..+.++.+|+..++ +..++||+|++..
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence            46789999998887532111               1267788888877766666888899988776 3567999999621


Q ss_pred             c------cccCC----------------h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 S------SHELP----------------G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~------l~~~~----------------~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .      ++..+                . ..+|.+++++|||||+|++++-+-
T Consensus       179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            1      11111                1 568999999999999999887543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.19  E-value=0.0021  Score=55.84  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=79.7

Q ss_pred             CCCCCCCcEEEEccCCCC-cHH-------------HHHHHHHHHHHHhhhhCCC--CeEEEeccCC-CCCCCCCceeEEE
Q 023870            2 DTGKMQSAVLALSEDKIL-PVS-------------AVLNAIRDLGDEAVEQCDP--QIITQASSLS-QLPVESFSIDTVL   64 (276)
Q Consensus         2 ~~~~~g~~vL~v~~~~~~-~~~-------------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~-~lp~~~~sfD~V~   64 (276)
                      ..++.|.+||+|+.|.+. ++.             ++.+.+++.|++++...+.  ++.+.++|+. .++. ...||+|+
T Consensus        11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Iv   89 (225)
T 3kr9_A           11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVIT   89 (225)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             HhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEE
Confidence            357889999999888863 221             1117888889888877765  4899999984 4432 22699988


Q ss_pred             eccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           65 SISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        65 s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ....--.+ -..++.+..+.|+|+|+|+++...     ..    ..+...|..+||.-++..
T Consensus        90 iaG~Gg~~-i~~Il~~~~~~L~~~~~lVlq~~~-----~~----~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           90 IAGMGGRL-IARILEEGLGKLANVERLILQPNN-----RE----DDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             EEEECHHH-HHHHHHHTGGGCTTCCEEEEEESS-----CH----HHHHHHHHHTTEEEEEEE
T ss_pred             EcCCChHH-HHHHHHHHHHHhCCCCEEEEECCC-----CH----HHHHHHHHHCCCEEEEEE
Confidence            64321100 157889999999999999987653     11    266778999999876553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.18  E-value=0.00057  Score=60.46  Aligned_cols=86  Identities=15%  Similarity=0.110  Sum_probs=62.7

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhh-----CCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQ-----CDPQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~-----~~~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      +.+.+||+++.|.+.-++.+            .+.|++.|+++...     .+.++.++.+|+....   ++||+|++..
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ  147 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence            45678999999876443322            26788888765432     2456889999987754   7899999863


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .    ....++++++|+|||||.|++....
T Consensus       148 ~----dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          148 E----PDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             C----CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             C----ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            2    1245899999999999999987544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.16  E-value=0.00022  Score=64.55  Aligned_cols=94  Identities=12%  Similarity=0.017  Sum_probs=58.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHH--HHH--H----HHH---hh--hhCC-CCeEEEec-cCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNA--IRD--L----GDE---AV--EQCD-PQIITQAS-SLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~--m~~--~----A~~---~~--~~~~-~~v~~~~~-d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|.+||+++.|.+.-...+...  +..  .    ...   ..  ...+ ..+.++++ |+..++  .++||+|++..
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~  156 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI  156 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence            4678999999999886432222211  000  0    000   00  0111 24788888 777665  56999999976


Q ss_pred             ccc---cCCh-H---HHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSH---ELPG-D---QLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~---~~~~-~---~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.+   +..+ .   .+|.+++|+|||||.|++..+..
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            543   3323 2   47899999999999999987754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.13  E-value=0.00058  Score=59.14  Aligned_cols=85  Identities=9%  Similarity=0.025  Sum_probs=58.1

Q ss_pred             CCCcEEEEccCCCCcHHHHHHHH------------------HHHHHHhhhhCCCCeEEEeccCCCC---CCCC-CceeEE
Q 023870            6 MQSAVLALSEDKILPVSAVLNAI------------------RDLGDEAVEQCDPQIITQASSLSQL---PVES-FSIDTV   63 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~~~m------------------~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~-~sfD~V   63 (276)
                      .+.+||.|+.|.+.....+...+                  ++.|+    ....++.++++|+.++   ++.. .+||+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I  156 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDCSDLTTFEHLREMAHPLI  156 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence            46789999999875433332221                  11111    1134689999999884   6544 479999


Q ss_pred             EeccccccCChHHHHHHHHH-hccCCcEEEEEec
Q 023870           64 LSISSSHELPGDQLLEEISR-VLKPGGTILIYKK   96 (276)
Q Consensus        64 ~s~~~l~~~~~~~~l~ei~r-vLKPgG~l~i~~~   96 (276)
                      ++... | .....++.+++| +|||||+|++.+.
T Consensus       157 ~~d~~-~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          157 FIDNA-H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             EEESS-C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EECCc-h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            97654 3 233789999998 9999999999764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.09  E-value=0.0022  Score=59.67  Aligned_cols=114  Identities=13%  Similarity=0.033  Sum_probs=76.0

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC---CeEEEeccCCCCCC----CCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP---QIITQASSLSQLPV----ESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp~----~~~sfD~V~   64 (276)
                      ..|.+||.+..|.+.-+-.+             .+.+++.|++++...+.   ++.++++|+..+..    ...+||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            46788999988887542222             17788888887776665   68999999876521    146899999


Q ss_pred             ecccc---------ccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870           65 SISSS---------HELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (276)
Q Consensus        65 s~~~l---------~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF  120 (276)
                      +.-..         +.... ..++.++.++|+|||.|+++........  ......+...+..+|+
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~i~~~~~~~g~  362 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS--DLFQKIIADAAIDAGR  362 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH--HHHHHHHHHHHHHHTC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH--HHHHHHHHHHHHHcCC
Confidence            86432         11234 6789999999999999999886543211  1112234445666664

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.07  E-value=0.0024  Score=56.86  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             CCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCce---eEEEecc
Q 023870            6 MQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSI---DTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sf---D~V~s~~   67 (276)
                      .+.+||+++.|.+..+..             +.+.|++.|++++...+.  ++.++++|+.+ +++ ++|   |+|+++-
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP  200 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence            567899999888754221             227888888888776665  38999999976 333 479   9999973


Q ss_pred             ccc-----------cCCh---------HHHHHHHH-HhccCCcEEEEEe
Q 023870           68 SSH-----------ELPG---------DQLLEEIS-RVLKPGGTILIYK   95 (276)
Q Consensus        68 ~l~-----------~~~~---------~~~l~ei~-rvLKPgG~l~i~~   95 (276)
                      .+.           |.+.         ..+++++. +.|+|||.|++..
T Consensus       201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            221           2211         27899999 9999999999854

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.05  E-value=0.0015  Score=60.76  Aligned_cols=94  Identities=11%  Similarity=-0.067  Sum_probs=67.5

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCC----CCCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPV----ESFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~----~~~sfD~V~s   65 (276)
                      +.|.+||.+..|.+.-+..+             .+.|++.|++++...+.  ++.++++|+..+..    ...+||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            47889999988876432211             17788888887766665  68999999876532    2578999998


Q ss_pred             cccccc---------CCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 ISSSHE---------LPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~l~~---------~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .-....         ... ..++.++.++|+|||.|++.....
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            543211         123 678899999999999999888664

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.04  E-value=0.0021  Score=58.60  Aligned_cols=90  Identities=11%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             CCCCCcEEEEccCCCCcHH-----------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVS-----------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~-----------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.|.+||++..|.+.-+.           ++.+.+++.|++++...+.  ++.++++|+.+..   .+||+|++.....
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~  269 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF  269 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred             cCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence            4578899999888763311           1227788888887766554  5899999998775   7999999864322


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecCCC
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                         ...++.++.++|+|||.|++.+....
T Consensus       270 ---~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          270 ---AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             ---GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             ---HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence               14789999999999999999887653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.03  E-value=0.0008  Score=64.35  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCC-CCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLP-VESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp-~~~~sfD~V~s~   66 (276)
                      ++.|++||++..+.+.-.-.+               .+.+++.+++++...+. ++.++.+|+..++ +.+++||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            467899999988776321111               16667777777766665 4888888888765 346799999974


Q ss_pred             cc------cccCC---------------h--HHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 SS------SHELP---------------G--DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~~------l~~~~---------------~--~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..      +..-+               .  ..+|.+++++|||||+|+.++-+-
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            32      11100               1  278999999999999999887543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.00  E-value=0.002  Score=60.32  Aligned_cols=95  Identities=12%  Similarity=-0.106  Sum_probs=65.7

Q ss_pred             CCCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCC-CCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~l-p~~~~sfD~V~s~~~l~   70 (276)
                      +++|.+||++..+.+.-+-.            +.+.|++.|++++...+....+.++|+.++ +...+.||+|++.....
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            45699999999888643221            227888888888776666556668887654 22233499999864321


Q ss_pred             c---------CCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           71 E---------LPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        71 ~---------~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .         ... ..++.++.++|||||.|++.+...
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            1         112 578899999999999999777654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.00  E-value=0.001  Score=61.94  Aligned_cols=115  Identities=14%  Similarity=0.070  Sum_probs=74.9

Q ss_pred             CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC---CeEEEeccCCC-CCC---CCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP---QIITQASSLSQ-LPV---ESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~---~v~~~~~d~~~-lp~---~~~sfD~V~   64 (276)
                      ..|.+||++..|.+.-+-.+             .+.|++.|++++...+.   ++.++++|+.. ++.   ...+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            56889999988886432211             16678888887766554   68999999865 331   245899999


Q ss_pred             ecccc-----ccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           65 SISSS-----HELP----G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        65 s~~~l-----~~~~----~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      +.-..     ....    . ..++.++.++|+|||.|++........  ....++.+...+..+|+.
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT--VSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC--HHHHHHHHHHHHTTCCCE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC--HHHHHHHHHHHHHHcCCc
Confidence            84332     1222    2 457788899999999999988664321  122233444556666665

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.97  E-value=0.004  Score=54.89  Aligned_cols=89  Identities=11%  Similarity=0.051  Sum_probs=70.3

Q ss_pred             CCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            5 KMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      .+..+||+++.|.. |...            +...|++.+++.....+....+.++|....+++. +||+|+++-++|++
T Consensus       104 ~~p~~VLDlGCG~g-pLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~L  181 (253)
T 3frh_A          104 ETPRRVLDIACGLN-PLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLL  181 (253)
T ss_dssp             CCCSEEEEETCTTT-HHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHH
T ss_pred             CCCCeEEEecCCcc-HHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHh
Confidence            45679999999875 3332            2388999998888777888899999998888655 99999999999998


Q ss_pred             Ch--HHHHHHHHHhccCCcEEEEEe
Q 023870           73 PG--DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        73 ~~--~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      ..  +...-.+...|+++|.++-..
T Consensus       182 E~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          182 EREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             hhhchhhHHHHHHHhcCCCEEEEcC
Confidence            75  333448999999998887665

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.92  E-value=0.0025  Score=59.06  Aligned_cols=93  Identities=11%  Similarity=-0.024  Sum_probs=66.7

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCC----CCCceeEEEeccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPV----ESFSIDTVLSISS   68 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~----~~~sfD~V~s~~~   68 (276)
                      .|.+||.+..|.+.-+..+.            +.|++.|++++...+.. +.++++|+..+..    ...+||+|++.-.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            57789999988875422222            77888888877665543 8999999876532    2578999998543


Q ss_pred             ccc---------CCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           69 SHE---------LPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        69 l~~---------~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ...         ... ..++.++.++|+|||.|++.....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            211         122 578899999999999999998764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.89  E-value=0.0012  Score=66.37  Aligned_cols=109  Identities=13%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             CCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCC---CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDP---QIITQASSLSQ-LPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~-lp~~~~sfD~V~s~~   67 (276)
                      ..|.+||.+..+.+.-+-             ++.+.|++.|++++...+.   ++.++++|+.+ ++...++||+|++..
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            368899999888763211             1227888888888766654   48999999876 455568999999854


Q ss_pred             cc-----------ccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           68 SS-----------HELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        68 ~l-----------~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      ..           +...+ ..++.++.++|||||+|++.........+        ...+...||.
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~--------~~~l~~~g~~  675 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD--------LDGLAKLGLK  675 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC--------HHHHHHTTEE
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC--------HHHHHHcCCc
Confidence            21           11223 67899999999999999988865332211        1235567876

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.87  E-value=0.0023  Score=56.62  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHH----------HHHHHHHhh---hhCCCCeEEE--eccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNA----------IRDLGDEAV---EQCDPQIITQ--ASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~----------m~~~A~~~~---~~~~~~v~~~--~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+++.|.+.-...+...          |...++++.   ...+.++.++  ++|+..++  +++||+|++..
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~  148 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV  148 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC
Confidence            4678999999998886432211111          110010000   0011157888  88998876  78999999976


Q ss_pred             ccccCC----h-H---HHHHHHHHhccCCc--EEEEEecCC
Q 023870           68 SSHELP----G-D---QLLEEISRVLKPGG--TILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~----~-~---~~l~ei~rvLKPgG--~l~i~~~~~   98 (276)
                      + ++..    + .   .+|.+++|+|||||  .|++..+.+
T Consensus       149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~  188 (265)
T 2oxt_A          149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP  188 (265)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred             c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence            6 3322    1 1   37899999999999  999988763

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.83  E-value=0.0052  Score=54.95  Aligned_cols=114  Identities=9%  Similarity=0.015  Sum_probs=76.2

Q ss_pred             CCCCCCcEEEEccCCCCc-HHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILP-VSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~-~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.|..||++..|.+.- +....            +.+.+.+++++...+.  .+.++.+|+..++ +.+.||.|+...
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~  200 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY  200 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECC
Confidence            467899999998888633 11111            6667777777766554  4889999998875 357899998764


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      ...   ..++|..+.++|||||.+.+.+..+.... .....+.+.+.+...||.
T Consensus       201 p~~---~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-~~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          201 VVR---THEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGYD  250 (278)
T ss_dssp             CSS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTCE
T ss_pred             CCc---HHHHHHHHHHHcCCCCEEEEEeeeccccc-chhHHHHHHHHHHHcCCc
Confidence            321   25678889999999999988776532110 011123455566777875

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.00087  Score=53.71  Aligned_cols=60  Identities=20%  Similarity=0.336  Sum_probs=45.1

Q ss_pred             CCCCCCCceeEEEeccccc-c-CC-hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           52 QLPVESFSIDTVLSISSSH-E-LP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        52 ~lp~~~~sfD~V~s~~~l~-~-~~-~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ...+++++||.|+...... . .. .+.++..+++.|||||+|..  ..     .      ....++.++||+..+
T Consensus        52 ~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g--l~-----~------~~~~EailaGfvv~~  114 (136)
T 2km1_A           52 SITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG--LS-----D------IYKVDALINGFEIIN  114 (136)
T ss_dssp             CCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC--CC-----H------HHHHHHHHHTEEEEC
T ss_pred             cccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe--cC-----c------chhhHHHhhccEecc
Confidence            4567899999999876432 1 11 28999999999999999996  11     1      345689999999655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.73  E-value=0.0031  Score=57.41  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=74.7

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      .+.+||+++.|.+.-+..+.                   +.|.++|+.+....+..+.+..+|... +.....||+|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEEC
Confidence            46788888888864322221                   456667766655455567888888765 3456789999998


Q ss_pred             cccccCCh-------------------HHHHHHHHHhccCCcEEEEEecCCCCch-hHHHHHHHHHHHHHHCCCcc
Q 023870           67 SSSHELPG-------------------DQLLEEISRVLKPGGTILIYKKLTSDKG-DVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        67 ~~l~~~~~-------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~-~~~~~~~~l~~~l~laGF~~  122 (276)
                      -.+++++.                   ..++.++.+.|||||++++..+.. ... ..   .+.+++.+...|++.
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~-~~~~~~---~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA-MFGTSD---FAKVDKFIKKNGHIE  280 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG-GGGSTT---HHHHHHHHHHHEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch-hcCCch---HHHHHHHHHhCCeEE
Confidence            77655432                   158999999999999999888542 111 11   135666677777754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.52  E-value=0.027  Score=53.05  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCC----CCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQ----LPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~----lp~~~~sfD~V~s~~   67 (276)
                      ..+.+||+++.|.+.-+..+.            +.|++.|++++...+. ++.|+++|+.+    +++++++||+|++.-
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            567899999999876533332            7888989888766654 59999999987    456778999999865


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                      .....  .++++.+.+ ++|++.++++...    ..+.    .-...|...||.-..
T Consensus       365 Pr~g~--~~~~~~l~~-~~p~~ivyvsc~p----~tla----rd~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          365 ARAGA--AGVMQQIIK-LEPIRIVYVSCNP----ATLA----RDSEALLKAGYTIAR  410 (433)
T ss_dssp             CTTCC--HHHHHHHHH-HCCSEEEEEESCH----HHHH----HHHHHHHHTTCEEEE
T ss_pred             CCccH--HHHHHHHHh-cCCCeEEEEECCh----HHHH----hhHHHHHHCCcEEEE
Confidence            43332  345555543 7899988887532    1111    122345667887543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.42  E-value=0.0083  Score=53.77  Aligned_cols=67  Identities=7%  Similarity=-0.109  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++.|.+||.++.|.+.-...+.            +.|++.++++....+ .++.++.+|+..++++  +||+|+++...+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py~  117 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPYK  117 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCGG
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCcc
Confidence            4578899999999876543332            788888887765444 3588999999988764  899999987666


Q ss_pred             cC
Q 023870           71 EL   72 (276)
Q Consensus        71 ~~   72 (276)
                      +.
T Consensus       118 ~~  119 (299)
T 2h1r_A          118 IS  119 (299)
T ss_dssp             GH
T ss_pred             cc
Confidence            53

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.34  E-value=0.017  Score=54.58  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +..+.+||++..|.+.-+..+.            +.|++.|++++...+..+.++.+|+.++...  +||+|++......
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAG  365 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTC
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccc
Confidence            3567899999999875422222            7888888887765555588999999887432  8999998654322


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEe
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .. ..+++.+. .|+|+|.++++.
T Consensus       366 ~~-~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          366 LH-PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             SC-HHHHHHHH-HHCCSEEEEEES
T ss_pred             hH-HHHHHHHH-hcCCCcEEEEEC
Confidence            21 34666554 599999999875

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.33  E-value=0.012  Score=52.49  Aligned_cols=115  Identities=10%  Similarity=0.019  Sum_probs=78.8

Q ss_pred             CCCCcEEEEccCCCCc--------------HHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~--------------~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..-.+||+++.|...-              +-++-+.|++.+++++...+....+.+.|...-+ +...||+|+++-++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence            3456788887776421              1134489999999988888888888888886654 577899999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC--CCCchhHHH-HHHHHHHHHHHCCCc
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL--TSDKGDVDK-AISALEGKLLLAGFL  121 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~--~~~~~~~~~-~~~~l~~~l~laGF~  121 (276)
                      ++.+   ...+ +++..|+|+|.|+-.+..  .+..-.+.. ..+.++..+...|..
T Consensus       210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~  265 (281)
T 3lcv_B          210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCR  265 (281)
T ss_dssp             HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCC
T ss_pred             HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCc
Confidence            9976   3566 899999999999877651  111111222 223455556667763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=95.88  E-value=0.00068  Score=58.80  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-CceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-~sfD~V~s~~~l~   70 (276)
                      ++.|++||.++.|.+.-...+.            +.|++.++++.. ...++.++++|+.+++++. ++| .|+++..++
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~  104 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYH  104 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTCCCSSEE-EEEEECCSS
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCcccCCCc-EEEEeCCcc
Confidence            4678899999999875533332            233333333322 1235889999999999874 689 676654332


Q ss_pred             cC-----------Ch-HHHH----HHHHHhccCCcEEEEEe
Q 023870           71 EL-----------PG-DQLL----EEISRVLKPGGTILIYK   95 (276)
Q Consensus        71 ~~-----------~~-~~~l----~ei~rvLKPgG~l~i~~   95 (276)
                      ..           .. ..++    +.+.|+|+|||.|++..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          105 LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            21           11 2233    55777888887766544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.77  E-value=0.029  Score=52.89  Aligned_cols=92  Identities=12%  Similarity=0.024  Sum_probs=62.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH---------------------------HHHHHHHHHhhhhCCC---CeEEEeccCCCCC
Q 023870            5 KMQSAVLALSEDKILPVSAVL---------------------------NAIRDLGDEAVEQCDP---QIITQASSLSQLP   54 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~---------------------------~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp   54 (276)
                      +.|.+||+.+.|.+.-+..+.                           +.|.++|+.+....+.   .+.+.++|....+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            457789999888874422221                           4555666655443443   4567788887766


Q ss_pred             CCCCceeEEEeccccccCCh------------------HHHHHHHHHhccCCcEEEEEecC
Q 023870           55 VESFSIDTVLSISSSHELPG------------------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~------------------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .. ..||+|+++-.++....                  ..+++++++.|||||++.+..+.
T Consensus       250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            44 38999999865443211                  37899999999999999888753

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.68  E-value=0.006  Score=53.83  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CCeEEEeccCCC-CCCCC----CceeEEEec-cccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHH
Q 023870           41 PQIITQASSLSQ-LPVES----FSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISAL  111 (276)
Q Consensus        41 ~~v~~~~~d~~~-lp~~~----~sfD~V~s~-~~l~~~~---~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l  111 (276)
                      .++..+.+|+.+ ++.-+    ..||+|+.- ++....+   ..++|.+++|.|||||+|+.....    .       .+
T Consensus       150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa----~-------~v  218 (257)
T 2qy6_A          150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA----G-------FV  218 (257)
T ss_dssp             EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB----H-------HH
T ss_pred             eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC----H-------HH
Confidence            346788899865 55322    279999973 3222112   268999999999999999854322    1       56


Q ss_pred             HHHHHHCCCcch
Q 023870          112 EGKLLLAGFLDA  123 (276)
Q Consensus       112 ~~~l~laGF~~v  123 (276)
                      .+.|..+||...
T Consensus       219 rr~L~~aGF~v~  230 (257)
T 2qy6_A          219 RRGLQEAGFTMQ  230 (257)
T ss_dssp             HHHHHHHTEEEE
T ss_pred             HHHHHHCCCEEE
Confidence            677888999854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=94.88  E-value=0.056  Score=46.71  Aligned_cols=77  Identities=5%  Similarity=0.034  Sum_probs=51.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-CceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-~sfD~V~s~~~l~   70 (276)
                      +..|.+||.++.|.+.-...+.            +.|++.++++... ..++.++++|+.++++++ ..| .|+++..++
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHhCCcccCCCe-EEEEeCCcc
Confidence            4578899999999875433232            7788888776543 246899999999999875 456 566665544


Q ss_pred             cCChHHHHHHHHHh
Q 023870           71 ELPGDQLLEEISRV   84 (276)
Q Consensus        71 ~~~~~~~l~ei~rv   84 (276)
                      +  ....+..+.+.
T Consensus       106 ~--~~~~l~~~l~~  117 (244)
T 1qam_A          106 I--STDIIRKIVFD  117 (244)
T ss_dssp             G--HHHHHHHHHHS
T ss_pred             c--CHHHHHHHHhc
Confidence            2  23344444443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.67  E-value=0.065  Score=49.40  Aligned_cols=111  Identities=18%  Similarity=0.068  Sum_probs=63.9

Q ss_pred             CCCcEEEEccCCCCcHHHHHHHHHHHHHHhhh---------hCCCCeEEEeccCCCCCCCCCceeEEEeccccc---c--
Q 023870            6 MQSAVLALSEDKILPVSAVLNAIRDLGDEAVE---------QCDPQIITQASSLSQLPVESFSIDTVLSISSSH---E--   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~---------~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~---~--   71 (276)
                      .+.+||+++.|.+.-+..+.+.+.  ...++.         ....++.++++|+...+ +...||+|+++-.+.   .  
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~--~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~  115 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHG--TAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEAS  115 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHC--SCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTT
T ss_pred             CCCEEEECCCCChHHHHHHHHHhC--CCCeEEEEECCHHHHHhCCCCcEEeCChhhcC-ccCCCCEEEECcCccCccccc
Confidence            467999999998743222211110  000110         00024778888887764 356899999963221   1  


Q ss_pred             -----CCh--------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           72 -----LPG--------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        72 -----~~~--------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                           +..                    ..++..+.++|+|||++++..+..-.....   ...+++.+...|+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~---~~~lr~~l~~~~~~~  188 (421)
T 2ih2_A          116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED---FALLREFLAREGKTS  188 (421)
T ss_dssp             TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG---GHHHHHHHHHHSEEE
T ss_pred             ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCcc---HHHHHHHHHhcCCeE
Confidence                 111                    256899999999999999887652100111   125556666667643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.66  E-value=0.11  Score=46.57  Aligned_cols=67  Identities=9%  Similarity=0.055  Sum_probs=51.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ++.|++||.|+.|.+.-...+.            +.|++.++++.. ...++.++.+|+..+++++.+||+|+++..+++
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQI  126 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSCGGGSCCSEEEEECCGGG
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCCcccCCccEEEEeCcccc
Confidence            4678999999999875433232            667777777654 234689999999999999889999998876554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=94.65  E-value=0.18  Score=45.40  Aligned_cols=93  Identities=5%  Similarity=-0.126  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCC---CceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVES---FSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~---~sfD~V~   64 (276)
                      +++|++||++..+.+.-.-.+.               +.|++.+++++...+. ++.++.+|+..++...   .+||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4678999999887753321111               5667777777776664 5889999988775432   5799999


Q ss_pred             ecc------ccc------c---CC--h--------HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SIS------SSH------E---LP--G--------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~------~l~------~---~~--~--------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +-.      .+.      |   +.  +        .++|...++.|+ ||+|+.++-+
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            721      111      1   00  1        246777778887 9998887654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.45  E-value=0.034  Score=49.58  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             eEEEeccCCC-CC-CCCCceeEEEeccccccC--------------------Ch-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870           43 IITQASSLSQ-LP-VESFSIDTVLSISSSHEL--------------------PG-DQLLEEISRVLKPGGTILIYKKLTS   99 (276)
Q Consensus        43 v~~~~~d~~~-lp-~~~~sfD~V~s~~~l~~~--------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~   99 (276)
                      +.++++|..+ ++ +++++||+|++.-.+...                    .. ..++.+++|+|||||.|++......
T Consensus        22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~  101 (297)
T 2zig_A           22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA  101 (297)
T ss_dssp             EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred             CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence            5788898865 33 578899999996543211                    11 3577899999999999988754210


Q ss_pred             -------C--chhHHHHHHHHHHHHHHCCCcchh
Q 023870          100 -------D--KGDVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus       100 -------~--~~~~~~~~~~l~~~l~laGF~~v~  124 (276)
                             .  ...+.   ..+...+..+||....
T Consensus       102 ~~~~~~g~~~~~~~~---~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          102 VARRRFGRHLVFPLH---ADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             EECC----EEEECHH---HHHHHHHHHTTCEEEE
T ss_pred             cccccCCcccccccH---HHHHHHHHHcCCeeec
Confidence                   0  01111   2455567778987543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.28  E-value=0.16  Score=47.21  Aligned_cols=72  Identities=13%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccccc-CC---h-HHHHHHHHHhccC--CcEEEEEe
Q 023870           25 LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHE-LP---G-DQLLEEISRVLKP--GGTILIYK   95 (276)
Q Consensus        25 ~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~~---~-~~~l~ei~rvLKP--gG~l~i~~   95 (276)
                      .+.|++.|++++...+.  .+.+.++|+.+++.+. +||+|+++-.+.. +.   . ..+++++.++||+  ||.+++.+
T Consensus       265 d~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          265 DGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             CHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            37788888888877665  4899999999988754 8999999865432 22   2 5677778888887  99999888


Q ss_pred             cC
Q 023870           96 KL   97 (276)
Q Consensus        96 ~~   97 (276)
                      ..
T Consensus       344 ~~  345 (384)
T 3ldg_A          344 ND  345 (384)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=94.24  E-value=0.12  Score=48.19  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccccc-CC---h-HHHHHHHHHhccC--CcEEEEEe
Q 023870           25 LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHE-LP---G-DQLLEEISRVLKP--GGTILIYK   95 (276)
Q Consensus        25 ~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~~---~-~~~l~ei~rvLKP--gG~l~i~~   95 (276)
                      .+.|++.|++++...+.  .+.++++|+.+++.+ .+||+|+++-.+.. +.   . ..+++++.++||+  ||.+++.+
T Consensus       272 d~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          272 DARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            37888888888877665  389999999998875 48999999865432 11   1 4567777778877  99998887


Q ss_pred             cC
Q 023870           96 KL   97 (276)
Q Consensus        96 ~~   97 (276)
                      ..
T Consensus       351 ~~  352 (393)
T 3k0b_A          351 SY  352 (393)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.83  E-value=0.17  Score=45.14  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             CeEEEeccCCCCCCCCCceeEEEeccccc----cCCh---HHHHHHHHHhccCC-cEEEEEecCC
Q 023870           42 QIITQASSLSQLPVESFSIDTVLSISSSH----ELPG---DQLLEEISRVLKPG-GTILIYKKLT   98 (276)
Q Consensus        42 ~v~~~~~d~~~lp~~~~sfD~V~s~~~l~----~~~~---~~~l~ei~rvLKPg-G~l~i~~~~~   98 (276)
                      ++.+.+.+++...++.+.||+|++-.+.+    +...   -.+|..+.++|||| |.|++..+.+
T Consensus       123 ~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          123 NIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             GGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            45566777776778889999999976554    3222   23568889999999 9999988774

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=93.82  E-value=0.14  Score=47.47  Aligned_cols=71  Identities=15%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccccc-CC---h-HHHHHHHHHhccC--CcEEEEEec
Q 023870           26 NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHE-LP---G-DQLLEEISRVLKP--GGTILIYKK   96 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~~---~-~~~l~ei~rvLKP--gG~l~i~~~   96 (276)
                      +.|++.|++++...+.  .+.+.++|+.+++.+ .+||+|+++-.+.. +.   . ..+++++.++||+  ||.+++.+.
T Consensus       267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            7888888888776665  489999999998764 58999999766532 21   2 5677778888887  999988876


Q ss_pred             C
Q 023870           97 L   97 (276)
Q Consensus        97 ~   97 (276)
                      .
T Consensus       346 ~  346 (385)
T 3ldu_A          346 Y  346 (385)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=93.70  E-value=0.19  Score=49.79  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             cEEEEccCCCCcHHHHH------------------HHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            9 AVLALSEDKILPVSAVL------------------NAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         9 ~vL~v~~~~~~~~~~v~------------------~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .||+|+.|.+ |+..+.                  ..|...+++.+..  .+..|+++.++++++.+| +.+|+|+|-..
T Consensus       360 vVldVGaGrG-pLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwM  437 (637)
T 4gqb_A          360 VLMVLGAGRG-PLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELL  437 (637)
T ss_dssp             EEEEESCTTS-HHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             EEEEECCCCc-HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcC
Confidence            5788888886 332111                  1133334443333  334599999999999876 68999999432


Q ss_pred             cccC-C-h-HHHHHHHHHhccCCcEEE
Q 023870           69 SHEL-P-G-DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        69 l~~~-~-~-~~~l~ei~rvLKPgG~l~   92 (276)
                      -..+ . . .+++....|.|||||.++
T Consensus       438 G~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          438 GSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHhcCCCcEEc
Confidence            1111 1 1 567778899999999985

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.19  E-value=0.15  Score=47.40  Aligned_cols=92  Identities=14%  Similarity=0.062  Sum_probs=60.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhh---------CCCCeEEEeccCCCC----CCCCCc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQ---------CDPQIITQASSLSQL----PVESFS   59 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~---------~~~~v~~~~~d~~~l----p~~~~s   59 (276)
                      ...+||+++.|.+.-++.+.             +.+++.+++....         ...+++.+.+|+-..    .-..+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            45789999999876666555             6788888775321         112367777776432    123468


Q ss_pred             eeEEEecccc-------ccCC----hHHHHHHHHHhccCCcEEEEEecC
Q 023870           60 IDTVLSISSS-------HELP----GDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        60 fD~V~s~~~l-------~~~~----~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ||+|+.=..-       ....    ..++++.++++|+|||.++.+...
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            9999973211       1111    267889999999999999876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.73  E-value=0.077  Score=48.05  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             eEEEeccCC-CCC-CCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHH
Q 023870           43 IITQASSLS-QLP-VESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL  116 (276)
Q Consensus        43 v~~~~~d~~-~lp-~~~~sfD~V~s-~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~  116 (276)
                      +.+..+|+. .++ ++...||+|+. .++...-|.   .+++++++|.++|||+|.-....    +       .+++.|.
T Consensus       168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa----g-------~VRR~L~  236 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS----L-------SVRKSLL  236 (308)
T ss_dssp             EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC----H-------HHHHHHH
T ss_pred             EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc----H-------HHHHHHH
Confidence            556778875 344 45568999987 333333232   78999999999999999854432    2       6678899


Q ss_pred             HCCCcch
Q 023870          117 LAGFLDA  123 (276)
Q Consensus       117 laGF~~v  123 (276)
                      .+||...
T Consensus       237 ~aGF~V~  243 (308)
T 3vyw_A          237 TLGFKVG  243 (308)
T ss_dssp             HTTCEEE
T ss_pred             HCCCEEE
Confidence            9999853

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=92.46  E-value=0.13  Score=47.61  Aligned_cols=87  Identities=11%  Similarity=0.000  Sum_probs=58.2

Q ss_pred             CCCcEEEEccCCCCcH-H-------------HHHHHHHHHHHHhhhhC---------------CCC-eEEEeccCCCCCC
Q 023870            6 MQSAVLALSEDKILPV-S-------------AVLNAIRDLGDEAVEQC---------------DPQ-IITQASSLSQLPV   55 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~-~-------------~v~~~m~~~A~~~~~~~---------------~~~-v~~~~~d~~~lp~   55 (276)
                      .|.+||++..|.+.-. .             ++.+.+++.+++++...               +.. +.++++|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            4677888877775321 1             11166677777766554               544 8889999866532


Q ss_pred             -CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           56 -ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        56 -~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                       ....||+|+.. ..  .....++..+.+.|||||.++++.
T Consensus       127 ~~~~~fD~I~lD-P~--~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLD-PF--GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEEC-CS--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeC-CC--CCHHHHHHHHHHhcCCCCEEEEEe
Confidence             14579999953 21  112678999999999999888764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=91.26  E-value=0.38  Score=43.97  Aligned_cols=86  Identities=8%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             CCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCC--------------
Q 023870            7 QSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLP--VES--------------   57 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~--------------   57 (276)
                      |.+||++..|.+.-.-            ++.+.|++.|++++...+. ++.++.+|++++.  +..              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            5789999888864321            1227888888887766554 5899999987642  222              


Q ss_pred             CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+||+|+..-...     .+..++.+.|+++|++++..-.
T Consensus       294 ~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          294 YQCETIFVDPPRS-----GLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             CCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEEEESC
T ss_pred             CCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEEEECC
Confidence            3899998753222     2345677888899999877654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=91.16  E-value=0.25  Score=47.95  Aligned_cols=72  Identities=13%  Similarity=-0.006  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhhhCCCC------eEEEeccCCCCC-CCCCceeEEEeccccccCC---------------hHHHHHHHHH
Q 023870           26 NAIRDLGDEAVEQCDPQ------IITQASSLSQLP-VESFSIDTVLSISSSHELP---------------GDQLLEEISR   83 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~------v~~~~~d~~~lp-~~~~sfD~V~s~~~l~~~~---------------~~~~l~ei~r   83 (276)
                      +.|.++|+.+....+..      +.+.++|....+ .....||+|+++-.+....               .-.++.++.+
T Consensus       221 ~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~  300 (541)
T 2ar0_A          221 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE  300 (541)
T ss_dssp             HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHH
Confidence            44555555544333322      456777765543 4567899999975543211               1479999999


Q ss_pred             hccCCcEEEEEecC
Q 023870           84 VLKPGGTILIYKKL   97 (276)
Q Consensus        84 vLKPgG~l~i~~~~   97 (276)
                      .|||||++.+..+.
T Consensus       301 ~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          301 TLHPGGRAAVVVPD  314 (541)
T ss_dssp             HEEEEEEEEEEEEH
T ss_pred             HhCCCCEEEEEecC
Confidence            99999999888753

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=91.12  E-value=0.31  Score=48.87  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             CCCCeEEEeccCCCCCCC-----CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 023870           39 CDPQIITQASSLSQLPVE-----SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        39 ~~~~v~~~~~d~~~lp~~-----~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~   92 (276)
                      .+..|+++.++++++.++     .+.+|+|+|-..-....+   .+.|..+.|.|||||.++
T Consensus       470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            345699999999999875     689999999553222222   578888899999999875

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=90.74  E-value=0.87  Score=38.48  Aligned_cols=66  Identities=12%  Similarity=-0.006  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhhhhCCC----CeEEEeccCCCC---------------C--------C-CCCceeEEEeccccccCChHHH
Q 023870           26 NAIRDLGDEAVEQCDP----QIITQASSLSQL---------------P--------V-ESFSIDTVLSISSSHELPGDQL   77 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~----~v~~~~~d~~~l---------------p--------~-~~~sfD~V~s~~~l~~~~~~~~   77 (276)
                      +.+.+.|++.....+.    +|.++.+++...               +        + ..++||+|+.-....    ...
T Consensus        61 ~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~----~~~  136 (202)
T 3cvo_A           61 RAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR----VGC  136 (202)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH----HHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc----hhH
Confidence            5666777776666654    588888986542               2        2 236899999854211    356


Q ss_pred             HHHHHHhccCCcEEEEEe
Q 023870           78 LEEISRVLKPGGTILIYK   95 (276)
Q Consensus        78 l~ei~rvLKPgG~l~i~~   95 (276)
                      +..+.+.|+|||++++-+
T Consensus       137 ~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          137 ALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             HHHHHHHCSSCEEEEETT
T ss_pred             HHHHHHhcCCCeEEEEeC
Confidence            666889999999997654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=90.41  E-value=0.74  Score=46.05  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhhhhCCCC--eEEEeccCCCC--CCCCCceeEEEecccccc-CC---h-HHHHHHH---HHhccCCcEEEE
Q 023870           26 NAIRDLGDEAVEQCDPQ--IITQASSLSQL--PVESFSIDTVLSISSSHE-LP---G-DQLLEEI---SRVLKPGGTILI   93 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~~--v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~-~~---~-~~~l~ei---~rvLKPgG~l~i   93 (276)
                      +.|++.|++++...+..  +.+.++|+.++  |...++||+|+++-.+.. +.   . ..+++.+   .+.+.|||.+++
T Consensus       266 ~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          266 ARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence            67888888888777765  89999999887  444458999999855422 11   1 3444444   455568999998


Q ss_pred             Eec
Q 023870           94 YKK   96 (276)
Q Consensus        94 ~~~   96 (276)
                      .+.
T Consensus       346 lt~  348 (703)
T 3v97_A          346 FSA  348 (703)
T ss_dssp             EES
T ss_pred             EeC
Confidence            865

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=90.36  E-value=0.44  Score=44.38  Aligned_cols=88  Identities=10%  Similarity=0.004  Sum_probs=59.1

Q ss_pred             CCCCcEEEEccCCCCc-HHHH--------------HHHHHHHHHHhhhhCCCC---eEEEeccCCCCC--CCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILP-VSAV--------------LNAIRDLGDEAVEQCDPQ---IITQASSLSQLP--VESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~-~~~v--------------~~~m~~~A~~~~~~~~~~---v~~~~~d~~~lp--~~~~sfD~V~   64 (276)
                      +.|.+||++..+.+.- +...              .+.+.+.+++++...+..   +.++.+|+..+-  .....||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            3578899987777522 1111              156667777777665542   888999875431  1245799999


Q ss_pred             eccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           65 SISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        65 s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .-- .  -....++..+.+.|+|||.|+++.
T Consensus       131 lDP-~--g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP-F--GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC-S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC-C--cCHHHHHHHHHHHhCCCCEEEEEe
Confidence            754 1  112578999999999999888775

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=89.92  E-value=0.65  Score=40.93  Aligned_cols=65  Identities=12%  Similarity=0.017  Sum_probs=48.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCC-ceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESF-SIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~-sfD~V~s~~~l~   70 (276)
                      ++.| +||.|+.|.+.-...+.            +.|++.++++..  +.++.++++|+..+++++. .||.|+++..++
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCChhhccCccEEEecCccc
Confidence            4567 99999999875433332            677888877664  2468999999999988753 789999987654


Q ss_pred             c
Q 023870           71 E   71 (276)
Q Consensus        71 ~   71 (276)
                      .
T Consensus       122 i  122 (271)
T 3fut_A          122 I  122 (271)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=89.54  E-value=0.33  Score=43.76  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=39.8

Q ss_pred             CeEEEeccCCC-CC-CCCCceeEEEecccccc--------------CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           42 QIITQASSLSQ-LP-VESFSIDTVLSISSSHE--------------LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        42 ~v~~~~~d~~~-lp-~~~~sfD~V~s~~~l~~--------------~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ...++.+|... +. +++++||+|++.-....              +.. ...+.+++|+|||||.+++....
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            35677788653 43 67889999998543211              112 67889999999999999987543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=89.19  E-value=0.91  Score=39.53  Aligned_cols=64  Identities=9%  Similarity=0.067  Sum_probs=47.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC----CceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES----FSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~----~sfD~V~s~~   67 (276)
                      +..|++||.|+.|.+.-...+.            +.|++.++++... ..++.++++|+..+++++    ..|| |+++.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence            4678999999999875543332            7888888887654 456899999999998764    4688 66665


Q ss_pred             cc
Q 023870           68 SS   69 (276)
Q Consensus        68 ~l   69 (276)
                      .+
T Consensus       105 PY  106 (255)
T 3tqs_A          105 PY  106 (255)
T ss_dssp             CH
T ss_pred             Cc
Confidence            43

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=86.81  E-value=0.34  Score=45.50  Aligned_cols=91  Identities=12%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhC--CC-CeEEEeccCCCC-CC-CCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQC--DP-QIITQASSLSQL-PV-ESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~--~~-~v~~~~~d~~~l-p~-~~~sfD~V~s~   66 (276)
                      ++.|.+||+++.|.+.-+..+.            +.|++.|++++...  +. ++.++++|+.+. +. ++.+||+|++.
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            4568999999999865422222            78899998887655  54 589999999874 42 34689999984


Q ss_pred             cc--------cccCCh-HHHHHHHHHhccCC-cEEEEE
Q 023870           67 SS--------SHELPG-DQLLEEISRVLKPG-GTILIY   94 (276)
Q Consensus        67 ~~--------l~~~~~-~~~l~ei~rvLKPg-G~l~i~   94 (276)
                      -.        .+.+.+ ..-+.++.+.|... ..+++.
T Consensus       171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK  208 (410)
T 3ll7_A          171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAK  208 (410)
T ss_dssp             CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEE
T ss_pred             CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEE
Confidence            22        122223 33456677765544 344443

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=86.81  E-value=0.85  Score=41.23  Aligned_cols=92  Identities=16%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             CCCCCCcEEEEcc---CCCCcHHHHHHHHHHHHHH--hhh-----h-CCCCeEEEeccCCCCCCCCCceeEEEecccc--
Q 023870            3 TGKMQSAVLALSE---DKILPVSAVLNAIRDLGDE--AVE-----Q-CDPQIITQASSLSQLPVESFSIDTVLSISSS--   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~---~~~~~~~~v~~~m~~~A~~--~~~-----~-~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l--   69 (276)
                      -++.|++||.++-   ....|...+...+   ..+  .+-     . ....-.++++|...+.. ...||+|+|=++.  
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~VLr~~---~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~-~~k~DLVISDMAPNt  181 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTAVLRQW---LPTGTLLVDSDLNDFVSDADSTLIGDCATVHT-ANKWDLIISDMYDPR  181 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHHHHHHH---SCTTCEEEEEESSCCBCSSSEEEESCGGGEEE-SSCEEEEEECCCCTT
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHHHHHHh---CCCCcEEEEeeCcccccCCCeEEEcccccccc-CCCCCEEEecCCCCc
Confidence            3689999999984   2223544222222   111  000     0 00112347788655433 4789999994321  


Q ss_pred             --c-------cCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 --H-------ELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 --~-------~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                        +       ...- +.++.-+.++|+|||.|++..+.-
T Consensus       182 TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          182 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence              1       1112 566676788999999999998764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=85.83  E-value=0.65  Score=41.59  Aligned_cols=64  Identities=11%  Similarity=0.122  Sum_probs=48.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCC---CceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLP--VES---FSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~---~sfD~V~   64 (276)
                      ++.|..||+++.|.+..+..+.              +.|++.|++++...+.++.++++++..++  +..   .+||.|+
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl  103 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL  103 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence            4578899999999876533332              77889898887665567999999998876  222   5899999


Q ss_pred             ecc
Q 023870           65 SIS   67 (276)
Q Consensus        65 s~~   67 (276)
                      +..
T Consensus       104 ~D~  106 (301)
T 1m6y_A          104 MDL  106 (301)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=85.13  E-value=3.7  Score=37.99  Aligned_cols=114  Identities=10%  Similarity=-0.130  Sum_probs=66.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhh-----------hCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVE-----------QCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~-----------~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .++.|+.|++++...+.  +.  ..+.++. .++-           .....|.++++|+.....+...||+|+|=++.+.
T Consensus       208 ~l~~G~~vlDLGAaPGG--WT--~~l~~rg-~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~p  282 (375)
T 4auk_A          208 RLANGMWAVDLGACPGG--WT--YQLVKRN-MWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKP  282 (375)
T ss_dssp             HSCTTCEEEEETCTTCH--HH--HHHHHTT-CEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSCH
T ss_pred             cCCCCCEEEEeCcCCCH--HH--HHHHHCC-CEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCCh
Confidence            46789999999877642  32  2222221 0110           1235689999999888877889999999765432


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecC-CCCchhHHHHHHHHHHHHHHCCCc
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKL-TSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~-~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      .....++..+...+..++.++..-.. ......+...++.+...+..+||.
T Consensus       283 ~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~  333 (375)
T 4auk_A          283 AKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGIN  333 (375)
T ss_dssp             HHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcc
Confidence            11133444444444444555443332 222234555566778888999986

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=84.22  E-value=0.19  Score=43.93  Aligned_cols=83  Identities=10%  Similarity=-0.091  Sum_probs=45.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------H-------HHHHHHHHhhhhCC--CCeEEEeccCCCC-C-CCC--Cc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------N-------AIRDLGDEAVEQCD--PQIITQASSLSQL-P-VES--FS   59 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~-------~m~~~A~~~~~~~~--~~v~~~~~d~~~l-p-~~~--~s   59 (276)
                      ..|.+||+++.|.+.-+..+.            +       .|++.|++++...+  .++.++++|+.++ + +++  ++
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~  161 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK  161 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence            456788998888764322111            4       77777766554333  2489999998874 3 555  79


Q ss_pred             eeEEEeccccccCChHHHHHHHHHhccC
Q 023870           60 IDTVLSISSSHELPGDQLLEEISRVLKP   87 (276)
Q Consensus        60 fD~V~s~~~l~~~~~~~~l~ei~rvLKP   87 (276)
                      ||+|++.-.+++......+++..+.|++
T Consensus       162 fD~V~~dP~~~~~~~sa~vkk~~~~l~~  189 (258)
T 2r6z_A          162 PDIVYLDPMYPERRKSAAVKKEMAYFHR  189 (258)
T ss_dssp             CSEEEECCCC-------------HHHHH
T ss_pred             ccEEEECCCCCCcccchHHHHHHHHhhh
Confidence            9999987655442222233334444444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=83.38  E-value=1.7  Score=42.10  Aligned_cols=76  Identities=9%  Similarity=0.067  Sum_probs=47.2

Q ss_pred             EeccCCCCC-CCCCceeEEEecccccc-------------------------CCh-----HHHHHHHHHhccCCcEEEEE
Q 023870           46 QASSLSQLP-VESFSIDTVLSISSSHE-------------------------LPG-----DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        46 ~~~d~~~lp-~~~~sfD~V~s~~~l~~-------------------------~~~-----~~~l~ei~rvLKPgG~l~i~   94 (276)
                      .++|....+ ++...||+|+++-.+..                         ++.     -.++..+.+.|||||++.+.
T Consensus       315 ~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiV  394 (544)
T 3khk_A          315 KNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALL  394 (544)
T ss_dssp             SSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEE
Confidence            556654333 55679999999654321                         111     25899999999999999888


Q ss_pred             ecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           95 KKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      .+.. .+.........+++.|...+.+.
T Consensus       395 lP~g-~L~~~~~~~~~iRk~Lle~~~l~  421 (544)
T 3khk_A          395 LANG-SMSSNTNNEGEIRKTLVEQDLVE  421 (544)
T ss_dssp             EETH-HHHCCGGGHHHHHHHHHHTTCEE
T ss_pred             ecch-hhhcCcchHHHHHHHHHhCCcHh
Confidence            7542 11000011236677777777654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=82.57  E-value=1.5  Score=40.37  Aligned_cols=57  Identities=23%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             CCeEEEeccCCCCC-CCCCceeEEEe----cc---c-cc------c-CC--------h--HHHHHHHHHhccCCcEEEEE
Q 023870           41 PQIITQASSLSQLP-VESFSIDTVLS----IS---S-SH------E-LP--------G--DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        41 ~~v~~~~~d~~~lp-~~~~sfD~V~s----~~---~-l~------~-~~--------~--~~~l~ei~rvLKPgG~l~i~   94 (276)
                      .++.+...|...++ +..+.||.|+.    +.   . +.      | +.        .  .++|....+.|||||+|+.+
T Consensus       204 ~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs  283 (359)
T 4fzv_A          204 NQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS  283 (359)
T ss_dssp             SSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            35777778877664 45679999996    11   0 00      1 11        1  35788889999999999887


Q ss_pred             ecC
Q 023870           95 KKL   97 (276)
Q Consensus        95 ~~~   97 (276)
                      +=+
T Consensus       284 TCS  286 (359)
T 4fzv_A          284 TCS  286 (359)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            744

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=82.46  E-value=9  Score=36.98  Aligned_cols=115  Identities=15%  Similarity=0.012  Sum_probs=71.0

Q ss_pred             CCCcEEEEccCCCCcHHHH-----------------HHHHHHHHHHhhhhCCC---CeEEEeccCCCC--C-CCCCceeE
Q 023870            6 MQSAVLALSEDKILPVSAV-----------------LNAIRDLGDEAVEQCDP---QIITQASSLSQL--P-VESFSIDT   62 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v-----------------~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l--p-~~~~sfD~   62 (276)
                      .|.+|++...|.+.-+..+                 .+.+.++|+.+....+.   .+.+.++|....  | +....||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            5678888877776432111                 14566666655444443   367788887655  4 45678999


Q ss_pred             EEecccc--cc-----------------CC-----hHHHHHHHHHhcc-CCcEEEEEecCCCCchhHHHHHHHHHHHHHH
Q 023870           63 VLSISSS--HE-----------------LP-----GDQLLEEISRVLK-PGGTILIYKKLTSDKGDVDKAISALEGKLLL  117 (276)
Q Consensus        63 V~s~~~l--~~-----------------~~-----~~~~l~ei~rvLK-PgG~l~i~~~~~~~~~~~~~~~~~l~~~l~l  117 (276)
                      |+++-.+  .|                 ++     +-.++.++.+.|| |||++.+..+.. .+.. ......+++.|..
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g-~Lf~-~~~~~~iRk~Lle  378 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG-VLFR-GNAEGTIRKALLE  378 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH-HHHC-CTHHHHHHHHHHH
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch-HhhC-CchhHHHHHHHHh
Confidence            9986332  11                 11     0248999999999 999998887652 1100 0112367777777


Q ss_pred             CCCcc
Q 023870          118 AGFLD  122 (276)
Q Consensus       118 aGF~~  122 (276)
                      .+.+.
T Consensus       379 ~~~l~  383 (542)
T 3lkd_A          379 EGAID  383 (542)
T ss_dssp             TTCEE
T ss_pred             CCcee
Confidence            77654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=80.99  E-value=0.66  Score=52.82  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=16.3

Q ss_pred             CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           55 VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +...+||+|++.+++|...+ ...|.++++.|||||++++.+.
T Consensus      1307 ~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1307 GSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -----CCEEEEECC--------------------CCEEEEEEC
T ss_pred             CCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            34568999999999987776 7899999999999999998764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=80.76  E-value=0.91  Score=39.74  Aligned_cols=86  Identities=13%  Similarity=-0.036  Sum_probs=48.5

Q ss_pred             CCCC--CcEEEEccCCCCcHHHHH------------HHHHHHHHHhh-------hhCC---CCeEEEeccCCC-CCCCCC
Q 023870            4 GKMQ--SAVLALSEDKILPVSAVL------------NAIRDLGDEAV-------EQCD---PQIITQASSLSQ-LPVESF   58 (276)
Q Consensus         4 ~~~g--~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~-------~~~~---~~v~~~~~d~~~-lp~~~~   58 (276)
                      ++.|  .+||+++.|.+..+-.+.            +.|.+++++.+       ...+   .+++++.+|+.+ ++.-..
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence            4566  899999999875422111            43333332221       1111   348899999875 342234


Q ss_pred             ceeEEEeccccccCChHHHHHHHHHhccCCc
Q 023870           59 SIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (276)
Q Consensus        59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG   89 (276)
                      +||+|+..-.+++-.....+++..++|++.+
T Consensus       164 ~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          164 RPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             CCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             cCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            7999998765554322556777888888765

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=80.58  E-value=1.7  Score=38.57  Aligned_cols=87  Identities=9%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             HHHHHHHhhhhCC---CCeEEEeccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc
Q 023870           28 IRDLGDEAVEQCD---PQIITQASSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK  101 (276)
Q Consensus        28 m~~~A~~~~~~~~---~~v~~~~~d~~-~lp-~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~  101 (276)
                      +.+.+++.....+   .+|.++.+++. .+| ++..+||+|+.=.-.  ... ...|..+++.|+|||.+++-+... +.
T Consensus       173 ~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~-~~  249 (282)
T 2wk1_A          173 SEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMM-CP  249 (282)
T ss_dssp             CHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTT-CH
T ss_pred             HHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCC-CH
Confidence            4555666665554   35999999885 454 456789999875432  122 578999999999999999877631 12


Q ss_pred             hhHHHHHHHHHHHHHHCCCc
Q 023870          102 GDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus       102 ~~~~~~~~~l~~~l~laGF~  121 (276)
                       ...+   ++...+...|+.
T Consensus       250 -G~~~---Av~Ef~~~~~i~  265 (282)
T 2wk1_A          250 -PCKD---AVDEYRAKFDIA  265 (282)
T ss_dssp             -HHHH---HHHHHHHHTTCC
T ss_pred             -HHHH---HHHHHHHhcCCc
Confidence             2233   444445555643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	3e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.002

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 8   SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 67
           S    L E K          +R    + V   D   + Q   L          D ++S  
Sbjct: 110 SQHACLIEGKGECWQDKERQLRARV-KRVLPID---VHQPQPLGAGSPAPLPADALVSAF 165

Query: 68  SSHELPGD-----QLLEEISRVLKPGGTILIYKKLTSDKGDVD 105
               +  D     + L+ I+ +L+PGG +L+   L        
Sbjct: 166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 58  FSIDTVLSISSSHELPGDQL---LEEISRVLKPGGTILIYKKLTSDKGDV----DKAISA 110
              D +LS      L    +   +  + R  KPGG  LI   + +           A   
Sbjct: 94  GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKE 153

Query: 111 LEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKA 159
            E +    G+     +   +    E+      G +   +  +  A K A
Sbjct: 154 GELRRYYEGW----DMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA 198

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 94
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 95  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.51
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.47
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.36
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.28
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.28
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.25
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.19
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.15
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.09
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.05
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.99
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.98
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.96
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.95
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.9
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.9
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.89
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.83
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.79
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.76
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.75
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.72
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.71
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.7
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.7
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.65
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.54
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.48
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.47
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.46
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.41
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.41
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.32
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.21
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.15
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.13
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.11
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.02
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.92
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.88
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.87
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.85
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.75
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.55
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.39
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.17
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.16
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.15
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.15
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.04
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.98
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.86
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.84
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.83
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.83
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.75
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.63
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.42
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.27
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.07
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.71
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.9
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.83
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.82
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	94.15
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	92.5
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.21
d2h00a1	250	Methyltransferase 10 domain containing protein MET	91.96
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.98
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	89.87
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	89.62
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	88.69
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.43
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	87.9
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	87.88
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.85
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	87.71
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	86.16
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	85.44
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	83.65
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	82.61

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.51  E-value=4.1e-14  Score=120.08  Aligned_cols=96  Identities=21%  Similarity=0.257  Sum_probs=82.2

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .++.|++||.|+.|.+.-...+.            +.|++.|+++....+ .++.+++++++++||++++||+|++..++
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA   91 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            57899999999999876544332            889999988776554 45899999999999999999999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ||+++ ..++++++|+|||||+|++.++..
T Consensus        92 ~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          92 HHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99988 899999999999999999987653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=1.3e-13  Score=117.93  Aligned_cols=96  Identities=17%  Similarity=0.257  Sum_probs=84.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      -+++|++||+|+.|.+..+..+            .+.|+++|++++...+. ++.++++|++++||++++||+|++..++
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee
Confidence            3789999999999998665544            38899999888766554 5899999999999999999999999999


Q ss_pred             ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           70 HELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ||+++ ..++++++|+|||||++++.++..
T Consensus        93 ~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          93 HHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            99987 999999999999999999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.36  E-value=1.9e-12  Score=113.82  Aligned_cols=96  Identities=22%  Similarity=0.225  Sum_probs=82.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||.|+.|.+..+..+.             +.|++.|+++....++  ++.++.++++++|+++++||+|++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            46899999999999986544333             8888888887766554  58999999999999999999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++|+++ ..++++++|+|||||+|++.++..
T Consensus       144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         144 AFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            9999998 899999999999999999988643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=1.4e-11  Score=102.81  Aligned_cols=114  Identities=15%  Similarity=0.176  Sum_probs=89.2

Q ss_pred             CCCCcEEEEccCCCCcHHHH--------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-H
Q 023870            5 KMQSAVLALSEDKILPVSAV--------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D   75 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v--------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~   75 (276)
                      .++.+||.|+.|.+.-+..+        .+.|++.|+++      ++.+++++++++|+++++||+|++..++||+++ .
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~  108 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE  108 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH
T ss_pred             CCCCeEEEECCCCcccccccceEEEEeCChhhccccccc------ccccccccccccccccccccccccccccccccccc
Confidence            45678999999987554433        38888888764      478999999999999999999999999999998 8


Q ss_pred             HHHHHHHHhccCCcEEEEEecCCCCchhH--HH--------------HHHHHHHHHHHCCCcchh
Q 023870           76 QLLEEISRVLKPGGTILIYKKLTSDKGDV--DK--------------AISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        76 ~~l~ei~rvLKPgG~l~i~~~~~~~~~~~--~~--------------~~~~l~~~l~laGF~~v~  124 (276)
                      .++++++|+|||||++++.++...+....  ..              ..+++...|..+||..++
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~  173 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK  173 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence            89999999999999999998764321100  00              124667788999997664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=7.7e-12  Score=104.77  Aligned_cols=95  Identities=21%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      .++.+.+||.|+.|.+.-+..+.            +.|++.|+++....+..+.++.+++.++|+++++||+|++..+++
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence            36788999999999986544333            889999998887777788999999999999999999999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+++   ..+|++++|+|||||+|++..+.
T Consensus       114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9974   67999999999999999988754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.8e-11  Score=105.17  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=80.5

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+|+.|.+..+..+.             +.|+++|++++...++  ++.++++|++++ +++++||+|++..
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~  108 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVG  108 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEES
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEe
Confidence            47899999999999985433332             8899999888777664  489999999998 5789999999999


Q ss_pred             ccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++|+++ ..++++++|+|||||+|++.++.
T Consensus       109 ~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         109 ATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            9999988 99999999999999999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=6.7e-11  Score=100.20  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=73.1

Q ss_pred             CCCCCcEEEEccCCCCcHH----------------HHHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVS----------------AVLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~----------------~v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      +++|.+||+|+.|.+....                ++.+.|++.|++++...+..  +.+..+++.++  +...+|+|++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EIKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CCCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--ccccceeeEE
Confidence            6789999999999874322                23399999999987665544  55666666554  5568999999


Q ss_pred             ccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++.+||++.   ..+|++++|+|||||.|++.+...
T Consensus       115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             eeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            999999863   789999999999999999998653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.4e-11  Score=101.96  Aligned_cols=122  Identities=14%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||.|+.|.+..+..+.             +.|++.|+++....+. ++.|++++++++++++++||+|++..++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999975433222             8999999888766543 47899999999999999999999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCCCCch-------hHHHHHHHHHHHHHHCCCcchhhh
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLTSDKG-------DVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~-------~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      |+++   ..++++++|+|||||.|++.++......       ........+.+.+..+||..++..
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence            9986   4799999999999999999976543110       000112366777899999876543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=9.8e-11  Score=99.09  Aligned_cols=89  Identities=20%  Similarity=0.177  Sum_probs=73.7

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~   70 (276)
                      ++.+.+||.++.|.+..+..+.            +.|++.|+++.     ...++.++++++|+++++||+|++. .++|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-----~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~  114 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG-----VKNVVEAKAEDLPFPSGAFEAVLALGDVLS  114 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT-----CSCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             cCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc-----ccccccccccccccccccccceeeecchhh
Confidence            5678899999999986654333            88999888763     1235679999999999999999985 5788


Q ss_pred             cCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |+++ ..+|++++|+|||||.|++..+.
T Consensus       115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         115 YVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             HCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            9988 88999999999999999998754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.05  E-value=1.6e-10  Score=100.45  Aligned_cols=120  Identities=10%  Similarity=0.083  Sum_probs=90.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      ..+.+||.++.|.+.-...+.             +.|++.|+++.... ..+.+.+++++++++++++||+|++..++||
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h  170 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc-ccceeEEccccccccCCCccceEEeeccccc
Confidence            456789999999985433332             88899998775432 3478999999999999999999999999999


Q ss_pred             CCh---HHHHHHHHHhccCCcEEEEEecCCCCc--------hhHHHHHHHHHHHHHHCCCcchhh
Q 023870           72 LPG---DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVDKAISALEGKLLLAGFLDAQR  125 (276)
Q Consensus        72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~--------~~~~~~~~~l~~~l~laGF~~v~~  125 (276)
                      +++   ..+|++++++|||||+|++.+......        ..+....+.+.+.+..+||..++.
T Consensus       171 l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~  235 (254)
T d1xtpa_         171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence            987   478999999999999999988653211        001112346667789999976654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.99  E-value=1.9e-09  Score=92.39  Aligned_cols=127  Identities=17%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCC-CCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l-p~~~~sfD~V~s~~~   68 (276)
                      +++|++||+++.|.+..+..+.              +.|++.+++++... .++..+.++.... ++.+..+|++++...
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-cccceEEEeeccCcccccccceeEEeecc
Confidence            7899999999999986643333              88888887776543 4566667776644 467788898888877


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~  131 (276)
                      +++..+ ..++.+++|+|||||++++......  ...+.....++....|..+||..++.....|.
T Consensus       151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py  216 (230)
T d1g8sa_         151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPF  216 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred             ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence            787777 8899999999999999998875432  22334455667778899999987766554443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=9.7e-10  Score=93.58  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~   70 (276)
                      .+.+.+||.++.|.+..+..+.            +.|++.|+++....+.++.+.++++++++++ ++||+|++. .+++
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~  117 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM  117 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence            3456789999999986644443            8899999998888888899999999999987 589999986 4666


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++.   ..+|++++|+|||||+|++....
T Consensus       118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         118 YFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            6653   68999999999999999987643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.96  E-value=1e-09  Score=96.42  Aligned_cols=93  Identities=8%  Similarity=0.025  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      +....+||.|+.|.+..+.               ++.+.|++.|+++....+.++.|+++|+++++++ ++||+|++..+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~  103 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF  103 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehh
Confidence            4567899999988863322               2238899999988877777899999999999986 47999999999


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +||+++ ..+|++++|+|||||+|++.++.
T Consensus       104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         104 LLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            999988 88999999999999999998853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.7e-09  Score=94.39  Aligned_cols=89  Identities=22%  Similarity=0.293  Sum_probs=72.9

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..+.+||+|+.|.+.-+..+.              +.|++.|+++.    .++.+.++|++++|+++++||+|++..+.+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~  158 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAPC  158 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhccCCCCCEEEEeecCCHH
Confidence            467889999999886544333              77888887653    568999999999999999999999988776


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEecCCCCchh
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGD  103 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~  103 (276)
                      +      ++|++|+|||||+|++.++.++++.+
T Consensus       159 ~------~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         159 K------AEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             C------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             H------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence            5      58999999999999999988755443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.90  E-value=5e-09  Score=90.32  Aligned_cols=120  Identities=16%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ....+||+|+.|.+.-+..+.             +.|++.++++....+.  ++.++.+|+.+ +. ..+||+|++.+.+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~vl  156 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFVL  156 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESCG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhheeecccc
Confidence            345689999999985544443             4577778777766553  58999999854 33 3579999999999


Q ss_pred             ccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc---hhHHH---------------HHHHHHHHHHHCCCcchhhh
Q 023870           70 HELPG---DQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK---------------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~~~---------------~~~~l~~~l~laGF~~v~~~  126 (276)
                      |++++   ..+|++++|+|||||+|+|.+......   .....               +.+++...+..+||..++..
T Consensus       157 h~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~  234 (253)
T d1tw3a2         157 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR  234 (253)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence            99986   478999999999999999998643211   11000               12455667889999866543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.90  E-value=5.5e-09  Score=88.24  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      .+.+||.|+.|.+.-+..+.            +.|++.|+++..   .++.++.++++++++ +++||+|++..++||++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc---ccccccccccccccc-ccccccccccceeEecC
Confidence            46789999999976544443            778998887642   358899999999886 57999999999999999


Q ss_pred             h-HHHHHHHH-HhccCCcEEEEEecC
Q 023870           74 G-DQLLEEIS-RVLKPGGTILIYKKL   97 (276)
Q Consensus        74 ~-~~~l~ei~-rvLKPgG~l~i~~~~   97 (276)
                      + ..+|.+++ |+|||||.+++..+.
T Consensus        96 d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          96 DPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             SHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            8 88999998 899999999998764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.89  E-value=4.5e-09  Score=86.98  Aligned_cols=92  Identities=20%  Similarity=0.096  Sum_probs=75.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      +++| +||+|+.|.+..+..+.            +.|++.+++++...+.. +.+...|+..+++ +++||+|++..++|
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM  106 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence            3445 99999999875543333            88899888877766654 8899999999886 67899999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++.   ..++++++++|+|||++++....
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9875   67999999999999999998754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.89  E-value=4.5e-09  Score=90.32  Aligned_cols=94  Identities=18%  Similarity=0.077  Sum_probs=76.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCC-CCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPV-ESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~-~~~sfD~V~s~~   67 (276)
                      +++|.+||+++.|.+..+..+.             +.|++.|+++....+  .++.+.++|+...++ ...+||+|++..
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            5789999999999986544332             889999988876544  358899999988776 467899999999


Q ss_pred             ccccCCh-----HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG-----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~-----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++||+..     ..++++++|+|||||+|++..+.
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            9998732     57999999999999999988764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.83  E-value=6.2e-09  Score=88.73  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccccC
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHEL   72 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~~~   72 (276)
                      .+.+||.|+.|.+.-+..+.            +.|++.|+++....+.++.++++|+.+++++ ++||+|++. .+++++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~  115 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI  115 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeeecc
Confidence            45789999999886654443            9999999998888888899999999998874 689999985 456666


Q ss_pred             Ch----HHHHHHHHHhccCCcEEEEEecC
Q 023870           73 PG----DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        73 ~~----~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..    ..+|++++++|||||.|++..+.
T Consensus       116 ~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         116 IDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            42    67999999999999999986543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=1.6e-08  Score=88.87  Aligned_cols=92  Identities=9%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||.|+.|-+..+..+.             +.+++.|++++...++.  +.+...+...+   +++||.|+++.
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~  125 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE  125 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence            47899999999999876644333             77888888888777654  66666665544   46899999999


Q ss_pred             ccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +++|+..   +.++++++|+|||||++++.+..
T Consensus       126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             HHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            9999864   78999999999999999998644

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.8e-09  Score=87.85  Aligned_cols=120  Identities=17%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCC--CCCCCCceeEEEe----
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQ--LPVESFSIDTVLS----   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~--lp~~~~sfD~V~s----   65 (276)
                      ..|.+||.|+.|.+..+..+.             +.|+++|+++.......+.++.+++..  .++++.+||.|+.    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence            578899999999986655454             889999999887777777777777653  3678889999873    


Q ss_pred             -ccccccCCh-HHHHHHHHHhccCCcEEEEEecCC------CCchhHHHH-HHHHHHHHHHCCCcchh
Q 023870           66 -ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT------SDKGDVDKA-ISALEGKLLLAGFLDAQ  124 (276)
Q Consensus        66 -~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~------~~~~~~~~~-~~~l~~~l~laGF~~v~  124 (276)
                       ...++++.+ ..++++++|+|||||+|++.+...      ......... .+.....|..+||...+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~  199 (229)
T d1zx0a1         132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  199 (229)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred             cccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence             445566666 789999999999999998754321      001111111 23445668889997554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.76  E-value=3e-08  Score=83.52  Aligned_cols=126  Identities=17%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~   68 (276)
                      +++|++||.++.|.+.....+.              +.|++.|++++... .++.++.+++...+.....+|.|... ..
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-CCceEEEeeccCccccccccceEEEEEec
Confidence            6899999999999985533222              88888887776554 36889999998877766666555433 33


Q ss_pred             cccCCh-HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870           69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (276)
Q Consensus        69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~  131 (276)
                      +++..+ ..++++++|+|||||++++......  ...+.....+.....+ .+||..++.....|+
T Consensus       133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i~L~P~  197 (209)
T d1nt2a_         133 IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHGSLMPY  197 (209)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEEECTTT
T ss_pred             ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEEccCCC
Confidence            444455 8899999999999999999875421  1112223333333333 489987776554443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=2.1e-08  Score=88.70  Aligned_cols=92  Identities=8%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+|+.|-+..+..+.             +.+.+.+++++...++.  +.+...|   .++.+++||.|+|+-
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~sie  134 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFDEPVDRIVSLG  134 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGCCCCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---ccccccccceEeech
Confidence            57899999999999886654333             66777788877766654  5565554   456688999999999


Q ss_pred             ccccCCh----------HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELPG----------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~----------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++.|+.+          +.++++++|+|||||++++.+..
T Consensus       135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            9988753          68999999999999999998865

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.72  E-value=3.2e-08  Score=85.58  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ....+||+|+.|.+.-+..+.             +.+++.+++++...+  .++.++.+++.. +++ ..||+|++.+.+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vL  157 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVL  157 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccc
Confidence            455689999999976544443             567777777766554  348888888764 554 469999999999


Q ss_pred             ccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           70 HELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      |++++   ..+|++++|+|||||+|+|.+..
T Consensus       158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         158 LNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            99986   57899999999999999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.71  E-value=1.4e-08  Score=82.20  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=75.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhC-------------CCCeEEEeccCCCCC-CCC
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQC-------------DPQIITQASSLSQLP-VES   57 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~-------------~~~v~~~~~d~~~lp-~~~   57 (276)
                      +++|.+||+++.|.+..+.-+.            +.|+++|++++...             +..+.+.++++..++ ...
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            6789999999999986544333            88999998876432             234578888888876 456


Q ss_pred             CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           58 FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        58 ~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .+||+|++..++++++.   ..++++++++|||||++++....
T Consensus        98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            78999999999999875   68999999999999999887654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=3.6e-08  Score=86.93  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=74.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .+++|++||+|+.|-+.++.-+.             +..++.|++++.+.+.  .+.+..+|...++   .+||.|+++.
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~  135 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG  135 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence            47899999999999987654333             6677888887766553  4888888887764   6899999999


Q ss_pred             ccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 SSHELP--G-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ++.|+.  + ..++++++|+|||||++++.+..
T Consensus       136 ~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         136 AFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            988884  3 78999999999999999988765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=3.6e-08  Score=86.06  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=81.9

Q ss_pred             CCCCCCcEEEEccCCCCcHHHH---H------------HHHHHHHHHhhhhC----CCCeEEEeccCCCCCCCCCceeEE
Q 023870            3 TGKMQSAVLALSEDKILPVSAV---L------------NAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTV   63 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v---~------------~~m~~~A~~~~~~~----~~~v~~~~~d~~~lp~~~~sfD~V   63 (276)
                      .+++|++||.++.|.+...-.+   +            +.|++.|+++....    -.++.++++|+.+.++++++||.|
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV  172 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  172 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceE
Confidence            4789999999999997542222   1            77888888866542    245889999999999999999999


Q ss_pred             EeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHH-HHCCCcchhhh
Q 023870           64 LSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL-LLAGFLDAQRI  126 (276)
Q Consensus        64 ~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l-~laGF~~v~~~  126 (276)
                      +.-     +++ ..++.+++|+|||||+|++..+.-   ....+    +...| ...||.+++..
T Consensus       173 ~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~P~i---~Qv~~----~~~~l~~~~~f~~i~~~  225 (264)
T d1i9ga_         173 VLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATV---TQLSR----IVEALRAKQCWTEPRAW  225 (264)
T ss_dssp             EEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSH---HHHHH----HHHHHHHHSSBCCCEEE
T ss_pred             EEe-----cCCHHHHHHHHHhccCCCCEEEEEeCcc---ChHHH----HHHHHHHcCCeecceEE
Confidence            863     344 678999999999999999988652   12222    22334 35689887654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.9e-09  Score=87.43  Aligned_cols=120  Identities=16%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             CCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCCCeE---------------------------
Q 023870            5 KMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDPQII---------------------------   44 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~~v~---------------------------   44 (276)
                      ..|.+||.|+.|.+....             ++.+.|++.|++++......+.                           
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            457789999888764311             2238888888877654332211                           


Q ss_pred             ----E----EeccCCCCCCCCCceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCchh--------
Q 023870           45 ----T----QASSLSQLPVESFSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDKGD--------  103 (276)
Q Consensus        45 ----~----~~~d~~~lp~~~~sfD~V~s~~~l~~~~----~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~--------  103 (276)
                          .    +..+....+++.++||+|++.+++||+.    + ..++++++|+|||||+|++.++.......        
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~  209 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  209 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence                0    1112223477899999999999999885    3 57899999999999999999876431100        


Q ss_pred             HHHHHHHHHHHHHHCCCcchh
Q 023870          104 VDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus       104 ~~~~~~~l~~~l~laGF~~v~  124 (276)
                      ..-..+.+...+..|||..++
T Consensus       210 ~~~~~~~~~~~l~~aGf~v~~  230 (257)
T d2a14a1         210 VALEKGEVEQAVLDAGFDIEQ  230 (257)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCEEEE
Confidence            000134777889999998543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=1.4e-08  Score=88.28  Aligned_cols=113  Identities=15%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .++|++||+++.|.+.-+..+.            +.|++.|++++...+..+.+.++++.. .++.++||+|+++...+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc
Confidence            5789999999999975432222            778899998888888888888888865 466789999998754332


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                        ...++.+++|+|||||+|+++....   ...    ..+...+..+||..++..
T Consensus       197 --l~~l~~~~~~~LkpGG~lilSgil~---~~~----~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         197 --HAALAPRYREALVPGGRALLTGILK---DRA----PLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEEEEG---GGH----HHHHHHHHHTTCEEEEEE
T ss_pred             --HHHHHHHHHHhcCCCcEEEEEecch---hhH----HHHHHHHHHCCCEEEEEE
Confidence              2678899999999999999976532   111    255667888999866543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.8e-08  Score=86.18  Aligned_cols=94  Identities=13%  Similarity=-0.016  Sum_probs=70.5

Q ss_pred             CCCCcEEEEccCCCCcHHHH--------------------HHHHHHHHHHhhhhCC----CCeEEEeccCCC------CC
Q 023870            5 KMQSAVLALSEDKILPVSAV--------------------LNAIRDLGDEAVEQCD----PQIITQASSLSQ------LP   54 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v--------------------~~~m~~~A~~~~~~~~----~~v~~~~~d~~~------lp   54 (276)
                      +.+.+||.|+.|.+.-...+                    .+.|++.|++++....    ..+.+...+++.      .+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            45558999999987432222                    2678888887765422    124455555442      36


Q ss_pred             CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           55 VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +++++||+|++..++||+++ ..++++++++|||||.|++..+..
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            78899999999999999988 899999999999999999988764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=1.1e-07  Score=82.25  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=81.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      .+++|++||.++.|.+.-...+.               +.|++.|+++....+  .++.+..+|+.+. +++++||.|+.
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~l  160 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIA  160 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEE
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeee
Confidence            47999999999999874322222               778888888776542  4589999999875 57889999986


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~  126 (276)
                      ..     ++ ..++.+++++|||||+|++..+.-   ...    +.+...|..+||.+++..
T Consensus       161 d~-----p~p~~~l~~~~~~LKpGG~lv~~~P~i---~Qv----~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         161 DI-----PDPWNHVQKIASMMKPGSVATFYLPNF---DQS----EKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             CC-----SCGGGSHHHHHHTEEEEEEEEEEESSH---HHH----HHHHHHSGGGTEEEEEEE
T ss_pred             cC-----CchHHHHHHHHHhcCCCceEEEEeCCc---ChH----HHHHHHHHHCCCceeEEE
Confidence            43     33 578999999999999999987651   112    244456778999876543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=1.1e-07  Score=79.96  Aligned_cols=88  Identities=16%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEec
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSI   66 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~   66 (276)
                      .+++|++||.|+.|.+-.+..+.               +.|.+.|+++....+. ++.++.+|+....+..++||+|++.
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence            37899999999999875422221               7888888888776654 4788899998888888899999999


Q ss_pred             cccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           67 SSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .+++++++     ++++.|||||+|++..
T Consensus       152 ~~~~~~p~-----~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         152 VGVDEVPE-----TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             SBBSCCCH-----HHHHHEEEEEEEEEEB
T ss_pred             ccHHHhHH-----HHHHhcCCCcEEEEEE
Confidence            98888763     5788999999998754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.48  E-value=3.1e-07  Score=75.57  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC---CCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD---PQIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~---~~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      ...+.+||.++.|.+.-+..+.            +.|++.+++++...+   .++.+..+|+.+ ++++++||+|++...
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p  128 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP  128 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc
Confidence            4578999999999975432222            888888888765543   348889999876 677899999999888


Q ss_pred             cccCCh--HHHHHHHHHhccCCcEEEEEecC
Q 023870           69 SHELPG--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        69 l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +|+..+  ..+++++.|+|||||++++....
T Consensus       129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             STTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            777655  67899999999999999876543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.1e-07  Score=77.37  Aligned_cols=94  Identities=12%  Similarity=-0.040  Sum_probs=74.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhh------------------CCCCeEEEeccCCCC
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQ------------------CDPQIITQASSLSQL   53 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~------------------~~~~v~~~~~d~~~l   53 (276)
                      ++.|.+||+++.|.+..+.-+.            +.|++.|+++...                  .+..+.+.++|+..+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4688999999999987644333            7788877665432                  234688999999877


Q ss_pred             C-CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870           54 P-VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        54 p-~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      + .....||+|+....+|+++.   +.++++++|+|||||++++....
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            4 66789999999999999874   78999999999999998877654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=4.6e-07  Score=74.12  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS   68 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~   68 (276)
                      .++.|+.||.++.|.+.-+..+.            +.|++.|++++...+.  +++++++++.+++++...||+|++...
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~  109 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence            35789999999999974322222            8999999998877764  689999999988888899999998765


Q ss_pred             cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      .+++  ..+++++.+.|||||++++.....   ...    ..+...+...||.
T Consensus       110 ~~~~--~~~~~~~~~~LkpgG~lvi~~~~~---e~~----~~~~~~l~~~~~~  153 (186)
T d1l3ia_         110 GGEL--QEILRIIKDKLKPGGRIIVTAILL---ETK----FEAMECLRDLGFD  153 (186)
T ss_dssp             TTCH--HHHHHHHHHTEEEEEEEEEEECBH---HHH----HHHHHHHHHTTCC
T ss_pred             cccc--hHHHHHHHHHhCcCCEEEEEeecc---ccH----HHHHHHHHHcCCC
Confidence            4432  678999999999999999876541   111    1334456666763

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=8.7e-07  Score=74.07  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISSS   69 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~l   69 (276)
                      +..||.|+.|.+..+..+.              ..|+..|.+++...+. ++.++.+|+..+.  ++++++|.|+..+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            4467999999875543332              6677777777766665 4999999998876  899999999998877


Q ss_pred             ccCCh---------HHHHHHHHHhccCCcEEEEEe
Q 023870           70 HELPG---------DQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        70 ~~~~~---------~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .|...         +.++++++|+|||||.|++.+
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            66543         479999999999999999886

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=9e-07  Score=75.22  Aligned_cols=135  Identities=16%  Similarity=0.070  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEccCCCCcHHH---HH------------HHHHHHHHHhhhhCCCCeEEEeccCCC---CCCCCCceeEEEe
Q 023870            4 GKMQSAVLALSEDKILPVSA---VL------------NAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLS   65 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~---lp~~~~sfD~V~s   65 (276)
                      +++|++||.++.|.+.....   ++            +.|++.+++++... .++..+..++..   .+.....+|+|+.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-CCceEEEEECCCcccccccccceEEEEE
Confidence            78999999999999866333   32            77888887766443 345666676643   3445678888876


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccccCCceeEEEEe
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK  142 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~  142 (276)
                      ..  ++... ..++.++++.|||||++++......  ...+.....+. ...+...||..++.....|...   ..+.+.
T Consensus       150 d~--~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~-v~~l~~~gf~iie~i~L~p~~~---~H~~vv  223 (227)
T d1g8aa_         150 DV--AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFRE-VERELSEYFEVIERLNLEPYEK---DHALFV  223 (227)
T ss_dssp             CC--CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHH-HHHHHHTTSEEEEEEECTTTSS---SEEEEE
T ss_pred             Ec--cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHH-HHHHHHcCCEEEEEEcCCCCCC---ceEEEE
Confidence            43  34444 7899999999999999998865432  11122222223 3346678998776655444311   234556


Q ss_pred             ecc
Q 023870          143 GKK  145 (276)
Q Consensus       143 akK  145 (276)
                      ++|
T Consensus       224 ~rK  226 (227)
T d1g8aa_         224 VRK  226 (227)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            665

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.1e-08  Score=82.77  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             CCCCcEEEEccCCCCc-HH------------HHHHHHHHHHHHhhhhCCCCe----------------------------
Q 023870            5 KMQSAVLALSEDKILP-VS------------AVLNAIRDLGDEAVEQCDPQI----------------------------   43 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~-~~------------~v~~~m~~~A~~~~~~~~~~v----------------------------   43 (276)
                      ..|.+||.|+.|.+.- +-            ++.+.|++.+++++......+                            
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            3578999998888743 11            222788888877654322111                            


Q ss_pred             ---EEEeccCC------CCCCCCCceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCch-------
Q 023870           44 ---ITQASSLS------QLPVESFSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDKG-------  102 (276)
Q Consensus        44 ---~~~~~d~~------~lp~~~~sfD~V~s~~~l~~~~----~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~-------  102 (276)
                         .....|+.      ..+++.++||+|++.+++|+++    + ..++++++|+|||||.|++......+..       
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~  212 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  212 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence               12233332      3345667899999999999886    3 6789999999999999999876432110       


Q ss_pred             -hHHHHHHHHHHHHHHCCCcchh
Q 023870          103 -DVDKAISALEGKLLLAGFLDAQ  124 (276)
Q Consensus       103 -~~~~~~~~l~~~l~laGF~~v~  124 (276)
                       -..-..+.+.+.+..+||..++
T Consensus       213 ~~~~~t~e~v~~~l~~aGf~v~~  235 (263)
T d2g72a1         213 TVVPVSEEEVREALVRSGYKVRD  235 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHCCCeEEE
Confidence             0001235778889999997653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.2e-06  Score=76.16  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      .+++|++||.++.|.+.-...+.               +.|++.|+++....+.  .+.+...|+.. .++...||.|+.
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~~  178 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALFL  178 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEEE
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeEe
Confidence            47899999999999874322221               7888999888877665  37777777643 567788999875


Q ss_pred             ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870           66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                           ++++ ..++.+++++|||||+|++..+.-   ..+    +.+...|..+||.+++..+
T Consensus       179 -----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~---~Qv----~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         179 -----DVPDPWNYIDKCWEALKGGGRFATVCPTT---NQV----QETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             -----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---HHH----HHHHHHHHHSSEEEEEEEC
T ss_pred             -----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc---cHH----HHHHHHHHHCCceeEEEEE
Confidence                 3444 678999999999999999988651   112    2445567889998776543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-06  Score=74.46  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=69.9

Q ss_pred             CCCCCCcEEEEccCCCCc---HHHHH------------HHHHHHHHHhhhhCC------CCeEEEeccCCCCCCCCCcee
Q 023870            3 TGKMQSAVLALSEDKILP---VSAVL------------NAIRDLGDEAVEQCD------PQIITQASSLSQLPVESFSID   61 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~---~~~v~------------~~m~~~A~~~~~~~~------~~v~~~~~d~~~lp~~~~sfD   61 (276)
                      .+++|++||.|+.|.+-.   +..++            +.|++.|+++....+      .++.+..+|+...+.+.+.||
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD  152 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  152 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence            578999999999999743   22221            677888877765433      357888999998888889999


Q ss_pred             EEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           62 TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        62 ~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +|++..+.++++     .++.+.|||||+|++...
T Consensus       153 ~I~~~~~~~~ip-----~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         153 AIHVGAAAPVVP-----QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEEECSBBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred             hhhhhcchhhcC-----HHHHhhcCCCcEEEEEEc
Confidence            999998888776     357899999999998654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.9e-07  Score=80.20  Aligned_cols=93  Identities=13%  Similarity=0.038  Sum_probs=67.8

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh----------CCCCeEEEeccCCCCCCCCC
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ----------CDPQIITQASSLSQLPVESF   58 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~----------~~~~v~~~~~d~~~lp~~~~   58 (276)
                      .++.++.||+++.|.+..+..+.              +.|.+.|++....          ...++.++++|+.++++.+.
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            36889999999999985533222              5666666554322          23458999999999998887


Q ss_pred             cee--EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           59 SID--TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        59 sfD--~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .||  +|+++ .+.+.++ ...|.+++|+|||||++++...
T Consensus       228 ~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         228 IANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             HHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            764  55554 4455555 7899999999999999987653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=5.3e-07  Score=78.62  Aligned_cols=93  Identities=16%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCC-----eEEEeccCCCCC--C-CCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQ-----IITQASSLSQLP--V-ESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~-----v~~~~~d~~~lp--~-~~~sfD~V~   64 (276)
                      +.+.+||.++.|.+..+..+.            +.|+++|+++....+..     .....+++..++  + ...+||+|+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            346789999999986544333            89999998876554432     233334443221  1 356899999


Q ss_pred             ec-cccccCCh--------HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SI-SSSHELPG--------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~-~~l~~~~~--------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +. .+++|+++        ..+|++++|+|||||+|++..+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            75 46676642        46999999999999999987643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.13  E-value=1.4e-05  Score=66.39  Aligned_cols=89  Identities=18%  Similarity=0.096  Sum_probs=68.3

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISSS   69 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~l   69 (276)
                      +..||.|+.|.+.-+..+.              ..|+..|.+++...+. ++.++.+|+..+.  +++.++|.|+..+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            3458999999875432222              6677777776666555 5999999998875  789999999998876


Q ss_pred             ccCC---------hHHHHHHHHHhccCCcEEEEEe
Q 023870           70 HELP---------GDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        70 ~~~~---------~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      .|..         .+.+|++++|+|||||.|++.+
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5543         2689999999999999999876

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=3.8e-06  Score=74.52  Aligned_cols=87  Identities=20%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      .|..||+|+.|.+.-+--..            ..|.+.|++.....+  .++.++.+++.++++++++||+|++....++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            68899999999864321111            334555666554443  3589999999999999999999999665544


Q ss_pred             CC---h-HHHHHHHHHhccCCcEEE
Q 023870           72 LP---G-DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        72 ~~---~-~~~l~ei~rvLKPgG~l~   92 (276)
                      +.   . ..++.++.|+|||||+++
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eccchhHHHHHHHHHhccCCCeEEE
Confidence            33   2 778999999999999985

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=72.03  Aligned_cols=114  Identities=15%  Similarity=0.085  Sum_probs=73.3

Q ss_pred             CCCCCCcEEEEccCCCCcH---HHHH------------HHHHHHHHHhhhhC------------CCCeEEEeccCCCCC-
Q 023870            3 TGKMQSAVLALSEDKILPV---SAVL------------NAIRDLGDEAVEQC------------DPQIITQASSLSQLP-   54 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~---~~v~------------~~m~~~A~~~~~~~------------~~~v~~~~~d~~~lp-   54 (276)
                      .+++|++||.++.|.+.-.   ...+            +.|++.|++++...            ..++.+..+|+.... 
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3789999999999987432   2221            77788887765431            235889999988664 


Q ss_pred             -CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHH--CCCcchhhhh
Q 023870           55 -VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDAQRIQ  127 (276)
Q Consensus        55 -~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~l--aGF~~v~~~~  127 (276)
                       +++.+||.|+.-..-.    ..++.+++++|||||+|++..+.      +.+.. .+...|+.  .||.+++..+
T Consensus       175 ~~~~~~fD~V~LD~p~P----~~~l~~~~~~LKpGG~lv~~~P~------i~Qv~-~~~~~l~~~~~~f~~i~~~E  239 (324)
T d2b25a1         175 DIKSLTFDAVALDMLNP----HVTLPVFYPHLKHGGVCAVYVVN------ITQVI-ELLDGIRTCELALSCEKISE  239 (324)
T ss_dssp             ------EEEEEECSSST----TTTHHHHGGGEEEEEEEEEEESS------HHHHH-HHHHHHHHHTCCEEEEEEEC
T ss_pred             ccCCCCcceEeecCcCH----HHHHHHHHHhccCCCEEEEEeCC------HHHHH-HHHHHHHHcCCCceeeEEEE
Confidence             5677899998632211    45899999999999999998765      22211 22333443  3688776543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.92  E-value=1.6e-05  Score=67.10  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=65.4

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      -++.|++||.|+.|.+--...+.            +.+.+.|+++... ..++.++.+|+.......+.||+|++..+.+
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~  145 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc-ccccccccCchhhcchhhhhHHHHHhhcchh
Confidence            36899999999999874332222            6677778776543 3578999999876555667899999988877


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEe
Q 023870           71 ELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        71 ~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +++     ..+.+.|||||+|++-.
T Consensus       146 ~ip-----~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         146 TLL-----CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             SCC-----HHHHHTEEEEEEEEEEE
T ss_pred             hhh-----HHHHHhcCCCCEEEEEE
Confidence            775     35678899999998754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.4e-05  Score=70.35  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhC--CCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ..|..||+|+.|.+.-+--+.            ..+...+++.+...  ..++.++.+++.+++++.++||+|++....+
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            468899999999864311111            11123333333333  3448999999999999999999999976655


Q ss_pred             cCC---h-HHHHHHHHHhccCCcEEE
Q 023870           71 ELP---G-DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        71 ~~~---~-~~~l~ei~rvLKPgG~l~   92 (276)
                      ++.   . +.++..+.|+|||||.++
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            543   2 789999999999999996

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.87  E-value=2.6e-05  Score=66.54  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=77.4

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~   70 (276)
                      ++...+|++|+.|.+.-+..+.             +.+++.+     ....++.++.+|+-+ ++|  ..|+|+....+|
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~-----~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh  150 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA-----PPLSGIEHVGGDMFA-SVP--QGDAMILKAVCH  150 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC-----CCCTTEEEEECCTTT-CCC--CEEEEEEESSGG
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhcc-----CCCCCeEEecCCccc-ccc--cceEEEEehhhh
Confidence            4556789999999975444333             2222211     122458999999854 444  459999999999


Q ss_pred             cCCh---HHHHHHHHHhccCCcEEEEEecCC---CCchh---HHH---------------HHHHHHHHHHHCCCcchhhh
Q 023870           71 ELPG---DQLLEEISRVLKPGGTILIYKKLT---SDKGD---VDK---------------AISALEGKLLLAGFLDAQRI  126 (276)
Q Consensus        71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~~---~~~~~---~~~---------------~~~~l~~~l~laGF~~v~~~  126 (276)
                      .+++   ..+|+.++++|+|||+|+|.+..-   .....   +..               +.+++...+..+||..++..
T Consensus       151 ~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~  230 (244)
T d1fp1d2         151 NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA  230 (244)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence            9987   678999999999999999998631   11000   000               12456677899999887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.85  E-value=2.7e-05  Score=65.31  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=69.1

Q ss_pred             CCCCCcEEEEccCCCCcHHH---HH----------HHHHHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            4 GKMQSAVLALSEDKILPVSA---VL----------NAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~---v~----------~~m~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +++|++||.|+.|.+-....   ++          +.+.+.|+++....+ .++.++.+|..........||+|+...+.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA  155 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccc
Confidence            68999999999998754222   22          667788888877766 45899999998776678899999998888


Q ss_pred             ccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           70 HELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .+++.     .+...|||||++++-..
T Consensus       156 ~~ip~-----~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         156 PKIPE-----PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             SSCCH-----HHHHTEEEEEEEEEEEC
T ss_pred             ccCCH-----HHHHhcCCCCEEEEEEc
Confidence            77764     36678999999987653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.3e-05  Score=66.25  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      ..|..||+|+.|.+.-+--+.             +.|.. +++.+..  ...++.++.+++++++++..+||+|++....
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            468899999999864211111             33433 2222222  2345899999999999999999999997665


Q ss_pred             ccCCh----HHHHHHHHHhccCCcEEE
Q 023870           70 HELPG----DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        70 ~~~~~----~~~l~ei~rvLKPgG~l~   92 (276)
                      ++...    +.++....|.|||||+++
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEe
Confidence            55442    577888889999999997

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.55  E-value=7e-05  Score=62.95  Aligned_cols=89  Identities=9%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             CCCCCCcEEEEccCCCCcHH---HHH-----------------HHHHHHHHHhhhhC------CCCeEEEeccCCCCCCC
Q 023870            3 TGKMQSAVLALSEDKILPVS---AVL-----------------NAIRDLGDEAVEQC------DPQIITQASSLSQLPVE   56 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~---~v~-----------------~~m~~~A~~~~~~~------~~~v~~~~~d~~~lp~~   56 (276)
                      -+++|++||.|+.|.+-...   .++                 +.+.+.|+++....      ..++.+..+|......+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            46899999999999874321   111                 45566666554321      23588999999887777


Q ss_pred             CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870           57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        57 ~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      .+.||+|++..+...++.     .+.+.|||||++++...
T Consensus       157 ~~~fD~Iiv~~a~~~~p~-----~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         157 NAPYNAIHVGAAAPDTPT-----ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             GCSEEEEEECSCBSSCCH-----HHHHTEEEEEEEEEEES
T ss_pred             ccceeeEEEEeechhchH-----HHHHhcCCCcEEEEEEe
Confidence            889999999888877763     57889999999987654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00054  Score=59.12  Aligned_cols=113  Identities=15%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             CCCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            5 KMQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      +.+.+||+++.|.+.-+-              ++.+..++.|++++...+. ++.++++|+.+ ++++.+||+|+++-.+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY  185 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence            446679999888864321              1227778888888877776 49999999865 5677899999997432


Q ss_pred             c-------------cCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870           70 H-------------ELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (276)
Q Consensus        70 ~-------------~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v  123 (276)
                      .             +-+            . ..++.+..+.|+|||.+++-... ..    .   ..+...+..+||..+
T Consensus       186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-~q----~---~~v~~~l~~~gf~~i  257 (274)
T d2b3ta1         186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQ----G---EAVRQAFILAGYHDV  257 (274)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SC----H---HHHHHHHHHTTCTTC
T ss_pred             hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-hH----H---HHHHHHHHHCCCCeE
Confidence            1             100            1 45788889999999999985432 11    1   155667888999876


Q ss_pred             hhh
Q 023870          124 QRI  126 (276)
Q Consensus       124 ~~~  126 (276)
                      +..
T Consensus       258 ~~~  260 (274)
T d2b3ta1         258 ETC  260 (274)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.17  E-value=0.00026  Score=57.80  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             EEEeccCCC-CCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 023870           44 ITQASSLSQ-LPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (276)
Q Consensus        44 ~~~~~d~~~-lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~   94 (276)
                      .+...+... .+.+.+.||+|+|.+++.+++.   .++++.+++.|+|||+|++-
T Consensus       116 ~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         116 EFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             HHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            344444433 2345678999999999999986   68999999999999998865

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.16  E-value=0.00064  Score=57.50  Aligned_cols=82  Identities=9%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870            7 QSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~   73 (276)
                      ...|++|+.|.+.-+..+.             +.+++.+     ....+++++.+|+.+ +.+  .+|+++....+|.|+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~-----~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~  152 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-----SGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT  152 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC-----CCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhC-----cccCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence            3568999998875433332             1122111     123569999999865 333  579999999999999


Q ss_pred             h---HHHHHHHHHhccCC---cEEEEEec
Q 023870           74 G---DQLLEEISRVLKPG---GTILIYKK   96 (276)
Q Consensus        74 ~---~~~l~ei~rvLKPg---G~l~i~~~   96 (276)
                      +   ..+|+.+++.|+||   |+++|.+.
T Consensus       153 d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         153 DKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            7   57899999999999   77888775

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.00077  Score=59.26  Aligned_cols=96  Identities=10%  Similarity=-0.074  Sum_probs=68.3

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCC----CCCCCCceeEE
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQ----LPVESFSIDTV   63 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~----lp~~~~sfD~V   63 (276)
                      .++.|.+||.+..+.+.-+-.+.             +.+++.+++++...+.  ++.++++|+..    ++....+||+|
T Consensus       142 ~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            36789999999988864322121             7788888888776665  47889998753    34456799999


Q ss_pred             EeccccccCC---------h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           64 LSISSSHELP---------G-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        64 ~s~~~l~~~~---------~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ++........         . ..++....++|||||.|++++-+.
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            9844321111         1 457888899999999999988664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.0004  Score=56.85  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCC-----CCCCCceeEEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQL-----PVESFSIDTVL   64 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l-----p~~~~sfD~V~   64 (276)
                      .++|..+++++-|.+.....+.              +.|++.|+++....+.++.++++++.++     .+..++||.|+
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL  100 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence            4688999999999987655555              7889999998877777799999988765     35568999998


Q ss_pred             ecccc---------ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           65 SISSS---------HELPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        65 s~~~l---------~~~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      .-...         ..+.. ...|...+++|+|||++++.++.
T Consensus       101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2         101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            74322         12333 68899999999999999998876

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00027  Score=64.48  Aligned_cols=93  Identities=16%  Similarity=0.005  Sum_probs=60.7

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC----------CCCeEE-EeccCCCCCCC-
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC----------DPQIIT-QASSLSQLPVE-   56 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~----------~~~v~~-~~~d~~~lp~~-   56 (276)
                      .+++|+.+|+|+.|.+..+..+.              +.|+++|++++...          ...+.+ ..++....++. 
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence            47899999999999985432222              77788887765431          112222 34444433322 


Q ss_pred             --CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           57 --SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        57 --~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                        -..+|+|+.++ +++.++ ...|.+++|+|||||+|++.+.
T Consensus       293 ~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         293 ELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             HHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence              23467777654 445555 8899999999999999987653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00068  Score=59.52  Aligned_cols=94  Identities=11%  Similarity=-0.025  Sum_probs=67.2

Q ss_pred             CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC----CCCCCCceeEEEecc
Q 023870            5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ----LPVESFSIDTVLSIS   67 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~----lp~~~~sfD~V~s~~   67 (276)
                      ..|.+||.+..+.+.-+-.+            .+.+++.|++++...+. ++.++++|+.+    ++....+||+|++.-
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            35889999988886432222            17788888888877776 48899998754    345567999999843


Q ss_pred             cccc---------CCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           68 SSHE---------LPG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        68 ~l~~---------~~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ....         ... .+++..+.++|||||.|++.+-++
T Consensus       224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            2111         111 467888999999999999887654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0027  Score=54.89  Aligned_cols=94  Identities=11%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh-----hCCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE-----QCDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.-.+||+++.|.+..++.+.              +.+++.|++...     ..+.++..+.+|+.. +.-..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            344689999998876555444              788888876432     245678888888643 333467899999


Q ss_pred             eccc-----cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISS-----SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~-----l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .-..     ...+-..++++.+.|.|+|||.++++..+.
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            7322     112223789999999999999999987664

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.84  E-value=0.00071  Score=57.00  Aligned_cols=89  Identities=8%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             CCCCcEEEEccCCCCcHHHHHHHHHHHHH-------Hhh--hhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-
Q 023870            5 KMQSAVLALSEDKILPVSAVLNAIRDLGD-------EAV--EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-   74 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~~~m~~~A~-------~~~--~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-   74 (276)
                      +...+|++|+.|.+.-+..+...-=. .+       ..+  .....++.++.+|+.. ++|.  .|+++....+|.+++ 
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~  155 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE  155 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence            33467999999987543322211000 00       001  1123458899999854 4443  466777788888886 


Q ss_pred             --HHHHHHHHHhccCCcEEEEEecC
Q 023870           75 --DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        75 --~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                        ..+|++++++|+|||+++|.+..
T Consensus       156 ~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         156 HCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             HHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEEE
Confidence              78999999999999999998753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.0042  Score=53.69  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=64.5

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh-----hCCCCeEEEeccCCC-C-CCCCCceeEEEe
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE-----QCDPQIITQASSLSQ-L-PVESFSIDTVLS   65 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~-l-p~~~~sfD~V~s   65 (276)
                      =.+||+++.|.+.-++.+.              +.+++.+++-..     ..+.+++.+.+|+.. + ...+++||+|+.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~  160 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  160 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence            3589999988876555444              777777766431     245778888888643 3 234678999997


Q ss_pred             ccc-----cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           66 ISS-----SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        66 ~~~-----l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      -..     ...+-..++++.+.+.|+|||.++++..+.
T Consensus       161 D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         161 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            322     122224889999999999999999987654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.83  E-value=0.0024  Score=54.82  Aligned_cols=94  Identities=11%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh-----------hCCCCeEEEeccCCCCCCCCCce
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE-----------QCDPQIITQASSLSQLPVESFSI   60 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~-----------~~~~~v~~~~~d~~~lp~~~~sf   60 (276)
                      +...+||+++.|.+..++.+.             +.+++.|++-..           ..+.++.++.+|+...--...+|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            456789999988875555443             778888865331           12466888888875432245789


Q ss_pred             eEEEecccc-----ccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           61 DTVLSISSS-----HELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        61 D~V~s~~~l-----~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      |+|+.-..-     ..+...++++.+.+.|+|||.++++..+.
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~  193 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV  193 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence            999973221     12223789999999999999999876543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.75  E-value=0.0034  Score=53.37  Aligned_cols=114  Identities=9%  Similarity=-0.004  Sum_probs=75.1

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870            3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++.|.+||++..|.+.-+-.+.             +.+.+.+++++...+.  .+.++++|+..++. .+.||.|++..
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~  182 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY  182 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC
Confidence            36789999999888874321111             5666777777665554  48899999988753 57899998754


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      ...   ...++.++.++||+||.+.+....+.... .....+.+.+.....||.
T Consensus       183 p~~---~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-~~~~~e~~~~~~~~~g~~  232 (260)
T d2frna1         183 VVR---THEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGYD  232 (260)
T ss_dssp             CSS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTCE
T ss_pred             CCc---hHHHHHHHHhhcCCCCEEEEEeccccccc-hhhHHHHHHHHHHHcCCc
Confidence            321   25678899999999999987765432110 011112444556677875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.63  E-value=0.0087  Score=51.17  Aligned_cols=94  Identities=14%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh-----hCCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE-----QCDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.-.+||+++.|.+..++.+.              +.+++.|++-..     ..++++..+.+|+.. +.-..++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            345789999988876655444              777777766432     235678888888753 334467899999


Q ss_pred             ecccc-----ccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISSS-----HELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~l-----~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .-..-     ..+-..++++.+.+.|+|||.++.+...+
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            73321     12334899999999999999999886543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.011  Score=51.09  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEEec
Q 023870            7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLSI   66 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~s~   66 (276)
                      -.+||+++.|.+..++.+.              +.+++.+++....     .+.++..+.+|+.. +.-..+.||+|+.-
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            3689999888875555443              7778877664321     35678888888743 33346789999973


Q ss_pred             cc------cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           67 SS------SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        67 ~~------l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      ..      ...+-..++++.+.+.|+|||.|+++..++
T Consensus       170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             C----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            22      122334899999999999999999887654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.27  E-value=0.0093  Score=52.03  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh-----hCCCCeEEEeccCCC-CCCCCCceeEEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE-----QCDPQIITQASSLSQ-LPVESFSIDTVL   64 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~-lp~~~~sfD~V~   64 (276)
                      +.-.+||+++.|.+..++.+.              +.+++.+++-..     ..++++..+.+|+.. +.-..+.||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            344689999999876555444              777888776432     234668888888753 333567899999


Q ss_pred             eccc-----cccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870           65 SISS-----SHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        65 s~~~-----l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      .-..     ..++-..++++.+.|.|+|||.++.+....
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            7332     122334789999999999999999886543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0043  Score=54.16  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=64.4

Q ss_pred             CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh------hCCCCeEEEeccCCCC-CCCCCceeEE
Q 023870            5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE------QCDPQIITQASSLSQL-PVESFSIDTV   63 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~------~~~~~v~~~~~d~~~l-p~~~~sfD~V   63 (276)
                      +.-.+||+++.|.+..++.+.              +.+++.+++...      ..+.++..+.+|+... .-....||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            344689999998875555443              777888876542      2346688888887643 3346789999


Q ss_pred             Eeccc--c------ccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870           64 LSISS--S------HELPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        64 ~s~~~--l------~~~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +.-..  .      ..+-..++++.+.|.|+|||.|+++...
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            96321  1      1122378999999999999999887543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.71  E-value=0.0099  Score=51.84  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC---CeEEEeccCCCC----CCCCCceeEE
Q 023870            4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP---QIITQASSLSQL----PVESFSIDTV   63 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~---~v~~~~~d~~~l----p~~~~sfD~V   63 (276)
                      +..|.+||.+..+.+.-+-.+.             +.+++.++++....+.   ++.++++|+...    .-....||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            5678999999888763321111             5556777776654443   488999988432    2345689999


Q ss_pred             Eecccc-----ccC----Ch-HHHHHHHHHhccCCcEEEEEecCC
Q 023870           64 LSISSS-----HEL----PG-DQLLEEISRVLKPGGTILIYKKLT   98 (276)
Q Consensus        64 ~s~~~l-----~~~----~~-~~~l~ei~rvLKPgG~l~i~~~~~   98 (276)
                      +.--..     ...    .+ .+++....++|+|||.|+++.-++
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            973211     111    12 568888999999999999988654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.16  E-value=0.14  Score=42.61  Aligned_cols=109  Identities=12%  Similarity=0.043  Sum_probs=69.0

Q ss_pred             CCCcEEEEccCCCCcHHHHH-----------HHH---HHHHHHhhhhCCC-CeEEEeccCCCCCCC---CCceeEEEecc
Q 023870            6 MQSAVLALSEDKILPVSAVL-----------NAI---RDLGDEAVEQCDP-QIITQASSLSQLPVE---SFSIDTVLSIS   67 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-----------~~m---~~~A~~~~~~~~~-~v~~~~~d~~~lp~~---~~sfD~V~s~~   67 (276)
                      .+.++++|+.|.+.|.-.+-           +..   ....+.-+...++ ++.++.++++.+...   .+.||+|++-.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            56789999999999942221           000   1112222333444 377788888876532   45899999965


Q ss_pred             ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      ..   +-..++.-..+.+++||++++.-.. ....++.    .....+...|+.-
T Consensus       150 va---~l~~ll~~~~~~l~~~g~~i~~KG~-~~~~El~----~a~~~~~~~~~~~  196 (239)
T d1xdza_         150 VA---RLSVLSELCLPLVKKNGLFVALKAA-SAEEELN----AGKKAITTLGGEL  196 (239)
T ss_dssp             CS---CHHHHHHHHGGGEEEEEEEEEEECC--CHHHHH----HHHHHHHHTTEEE
T ss_pred             hh---CHHHHHHHHhhhcccCCEEEEECCC-ChHHHHH----HHHHHHHHcCCEE
Confidence            32   2267889999999999999887643 2223332    4455677777764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.90  E-value=0.014  Score=47.92  Aligned_cols=70  Identities=14%  Similarity=0.145  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhhhhCCC--CeEEEeccCCCC------CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870           26 NAIRDLGDEAVEQCDP--QIITQASSLSQL------PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~--~v~~~~~d~~~l------p~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~   95 (276)
                      +.+.+.|++.....+.  +|+++.++..++      .+..+.||+|+.-...........+.+..+.|||||.+++-+
T Consensus        91 ~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1          91 PDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeC
Confidence            6667777776666554  489999987643      245678999987532111112335777889999999877644

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.83  E-value=0.021  Score=43.95  Aligned_cols=91  Identities=10%  Similarity=0.003  Sum_probs=61.1

Q ss_pred             CCCcEEEEccCCCCc-HHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CCCCCCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILP-VSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LPVESFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~-~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp~~~~sfD~V~s~~~l   69 (276)
                      .|.+||++..|.+.- ++...            +.+++.+++.+...+.  ++.++++|+.. ++...++||+|++--.+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            488999998888733 23222            6666667666655543  38889999865 45677899999986432


Q ss_pred             ccCChHHHHHHHH--HhccCCcEEEEEec
Q 023870           70 HELPGDQLLEEIS--RVLKPGGTILIYKK   96 (276)
Q Consensus        70 ~~~~~~~~l~ei~--rvLKPgG~l~i~~~   96 (276)
                      ..-.-...+..+.  ++|+|+|.+++...
T Consensus        94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          94 AKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            2111155666553  67999999987654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.1  Score=42.41  Aligned_cols=87  Identities=11%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CCcEEEEccCCCCcHHHHH-----------HHH---HHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870            7 QSAVLALSEDKILPVSAVL-----------NAI---RDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHE   71 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~~v~-----------~~m---~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~   71 (276)
                      +.++++++.|.+.|.-.+.           +..   ....++.+...+. ++.++..+++++. ...+||+|++....  
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA--  142 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc--
Confidence            5689999999999943222           000   1122333334455 5888999999875 35689999986532  


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEecC
Q 023870           72 LPGDQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        72 ~~~~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                       +-..++.-..+.++++|++++.-..
T Consensus       143 -~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         143 -SLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             -SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEECCC
Confidence             2267888899999999999988643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=94.15  E-value=0.044  Score=43.00  Aligned_cols=93  Identities=12%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             CCCCCcEEEEccCCCCc-HHHHH-----------HHHHHHHHHhhhhCCCCeEEEeccCC----CCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILP-VSAVL-----------NAIRDLGDEAVEQCDPQIITQASSLS----QLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~-~~~v~-----------~~m~~~A~~~~~~~~~~v~~~~~d~~----~lp~~~~sfD~V~s~~   67 (276)
                      +..|.+||++..|.+.- +....           +.+++.+++.++..+....+...+..    .......+||+|++.-
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            46789999998888643 22222           77788888877766655444444443    2234567899999854


Q ss_pred             ccccCChHHHHHHH--HHhccCCcEEEEEecC
Q 023870           68 SSHELPGDQLLEEI--SRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ~l~~~~~~~~l~ei--~rvLKPgG~l~i~~~~   97 (276)
                      .++. .....+.++  ..+|+|||.+++....
T Consensus       119 PY~~-~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         119 PYAM-DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CTTS-CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             cccc-CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            4332 223344444  3579999998876543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.50  E-value=0.47  Score=37.72  Aligned_cols=105  Identities=12%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~   72 (276)
                      .|..||+++.|.+.-+..+.             +.+++.+++++...+..+.+..+|+..+   ...||+|+++-.+...
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccc
Confidence            47799999999874321111             7778888888777778888988888775   4579999997665433


Q ss_pred             C---hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870           73 P---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (276)
Q Consensus        73 ~---~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~  122 (276)
                      .   +..++..   .+.+++.++......   ....   ..+.......|+..
T Consensus       123 ~~~~d~~~l~~---~~~~~~~v~~ih~~~---~~~~---~~i~~~~~~~g~~i  166 (201)
T d1wy7a1         123 RKHADRPFLLK---AFEISDVVYSIHLAK---PEVR---RFIEKFSWEHGFVV  166 (201)
T ss_dssp             STTTTHHHHHH---HHHHCSEEEEEEECC---HHHH---HHHHHHHHHTTEEE
T ss_pred             cccccHHHHHH---HHhhcccchhcccch---HHHH---HHHHHHHhhcCceE
Confidence            2   2444443   344455554443221   1111   23444456666653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.16  Score=41.34  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhhhCC--CCeEEEeccCCC-CC-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           26 NAIRDLGDEAVEQCD--PQIITQASSLSQ-LP-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~--~~v~~~~~d~~~-lp-----~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      +...+.|++.....+  ..+.++.+++.+ ++     ...++||+|+.-..   -.. ...+..+.+.|+|||.+++-+.
T Consensus        94 ~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1          94 AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            455666666665544  348889888743 22     24678999998642   223 6778899999999999998765


Q ss_pred             C
Q 023870           97 L   97 (276)
Q Consensus        97 ~   97 (276)
                      .
T Consensus       171 l  171 (219)
T d2avda1         171 L  171 (219)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=1.4  Score=36.02  Aligned_cols=113  Identities=10%  Similarity=-0.006  Sum_probs=66.8

Q ss_pred             CCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCC--eEEEeccCCCC------CCCCCceeEEE
Q 023870            7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQ--IITQASSLSQL------PVESFSIDTVL   64 (276)
Q Consensus         7 g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~l------p~~~~sfD~V~   64 (276)
                      .-++|+++.|.+.-.-              ++.+.+++.|++.+...+..  +.+...+....      ...+..||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            3478999888763211              12278889998888776543  66555443322      22456899999


Q ss_pred             eccccccCCh------------------------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHH
Q 023870           65 SISSSHELPG------------------------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAI  108 (276)
Q Consensus        65 s~~~l~~~~~------------------------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~  108 (276)
                      |+-.++....                                    ..++++..+.++..|.+........+..      
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~------  215 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLA------  215 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHH------
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHH------
Confidence            9865442110                                    2234455667788888765544322221      


Q ss_pred             HHHHHHHHHCCCcchhhh
Q 023870          109 SALEGKLLLAGFLDAQRI  126 (276)
Q Consensus       109 ~~l~~~l~laGF~~v~~~  126 (276)
                       .+...|+..||.++...
T Consensus       216 -~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         216 -PLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             -HHHHHHHHTTCSEEEEE
T ss_pred             -HHHHHHHHcCCCeEEEE
Confidence             45567788888766543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.32  Score=38.26  Aligned_cols=91  Identities=14%  Similarity=-0.003  Sum_probs=55.6

Q ss_pred             CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHh--hh-----h--CCCCeEEEeccCCCCC--------CCCCceeEEEe
Q 023870            3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDEA--VE-----Q--CDPQIITQASSLSQLP--------VESFSIDTVLS   65 (276)
Q Consensus         3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~--~~-----~--~~~~v~~~~~d~~~lp--------~~~~sfD~V~s   65 (276)
                      .+++|++||.++...+.=+    +.+.+.....  +-     .  .-..+.++++++....        +....||+|+|
T Consensus        19 l~k~~~~vlDLg~aPGgw~----q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS   94 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWS----QYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHH----HHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCCeEEEEeccCCcce----EEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence            5789999999987765322    2222222111  10     0  0123677888876532        24567999999


Q ss_pred             cccccc----CCh--------HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHE----LPG--------DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~----~~~--------~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      =.+...    ..+        ...+.-..++||+||.|++..+.
T Consensus        95 D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence            443211    111        34566678999999999999986

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.87  E-value=0.19  Score=43.26  Aligned_cols=93  Identities=13%  Similarity=0.015  Sum_probs=59.8

Q ss_pred             CCCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCC---CCeEEEeccCCCC----CCCCCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCD---PQIITQASSLSQL----PVESFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~---~~v~~~~~d~~~l----p~~~~sfD~V~s   65 (276)
                      ..|.+||.+-.+.+.-+-            +....+++.|++++...+   .++.|+++|+...    ......||+|++
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            457889999887753211            112777888887665433   2488999988543    234578999997


Q ss_pred             c---ccc-----cc-CCh--HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 I---SSS-----HE-LPG--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~---~~l-----~~-~~~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      -   +..     .+ +.+  ..++..+.++|+|||.+++.+..
T Consensus       211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            3   111     11 112  45667788999999987766644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.42  Score=37.36  Aligned_cols=91  Identities=9%  Similarity=-0.013  Sum_probs=57.7

Q ss_pred             CCCcEEEEccCCCCc-HHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEeccccc
Q 023870            6 MQSAVLALSEDKILP-VSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSISSSH   70 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~-~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~~l~   70 (276)
                      .|.+||++..|.+.- ++.+.            ....+.+++.+...+. ++.++.+|+.. +......||+|++--.+.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence            366788887777632 33333            4455556555544433 46777787653 445577899999965543


Q ss_pred             cCChHHHHHHHHH--hccCCcEEEEEec
Q 023870           71 ELPGDQLLEEISR--VLKPGGTILIYKK   96 (276)
Q Consensus        71 ~~~~~~~l~ei~r--vLKPgG~l~i~~~   96 (276)
                      .-.....+..+.+  +|+++|.+++...
T Consensus       123 ~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         123 RGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            3222666776654  6999999988643

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=88.69  E-value=1.1  Score=39.13  Aligned_cols=81  Identities=11%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             eccCCCCCCCCCceeEEEeccccccCCh----------------------------------HHHHHHHHHhccCCcEEE
Q 023870           47 ASSLSQLPVESFSIDTVLSISSSHELPG----------------------------------DQLLEEISRVLKPGGTIL   92 (276)
Q Consensus        47 ~~d~~~lp~~~~sfD~V~s~~~l~~~~~----------------------------------~~~l~ei~rvLKPgG~l~   92 (276)
                      -++...==||++|.|+++|++++||+..                                  ..+|+.=++-|+|||+++
T Consensus       127 pGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv  206 (359)
T d1m6ex_         127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             CCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            3455444589999999999999999631                                  136666677899999999


Q ss_pred             EEecCCCCc----hh---HHHHHHHHHHHHHHCCCcchhhhh
Q 023870           93 IYKKLTSDK----GD---VDKAISALEGKLLLAGFLDAQRIQ  127 (276)
Q Consensus        93 i~~~~~~~~----~~---~~~~~~~l~~~l~laGF~~v~~~~  127 (276)
                      +...+....    ..   .-......-..|..-|.++.+...
T Consensus       207 l~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~d  248 (359)
T d1m6ex_         207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMD  248 (359)
T ss_dssp             EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTG
T ss_pred             EEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            987653210    01   111223344567888888765543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.43  E-value=0.1  Score=42.81  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             EEEeccCCCC--CCCCCceeEEEecccc----c-------cCCh-HHHHHHHHHhccCCcEEEEEecCCCCch-hHHHHH
Q 023870           44 ITQASSLSQL--PVESFSIDTVLSISSS----H-------ELPG-DQLLEEISRVLKPGGTILIYKKLTSDKG-DVDKAI  108 (276)
Q Consensus        44 ~~~~~d~~~l--p~~~~sfD~V~s~~~l----~-------~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~-~~~~~~  108 (276)
                      .|+++|..++  .++++|+|+|+..-..    .       +..- ...+.+++|+|||+|.+++......... ......
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~   85 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI   85 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence            4666665432  4779999999984321    1       1111 6778999999999999988654321110 000011


Q ss_pred             HHHHHHHHHCCCcch
Q 023870          109 SALEGKLLLAGFLDA  123 (276)
Q Consensus       109 ~~l~~~l~laGF~~v  123 (276)
                      ..+...+...||.-.
T Consensus        86 ~~~~~~~~~~~~~~~  100 (279)
T d1eg2a_          86 SIISHMRQNSKMLLA  100 (279)
T ss_dssp             HHHHHHHHHCCCEEE
T ss_pred             hHHHHHHhccCceee
Confidence            233445667788743

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.90  E-value=0.71  Score=36.28  Aligned_cols=91  Identities=14%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC-----CCCCceeEEEec
Q 023870            4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLP-----VESFSIDTVLSI   66 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-----~~~~sfD~V~s~   66 (276)
                      .+.|+.+++.|-|.+..+..+.            +.+++.++++   ...++.++++...++.     +..+.+|.|+.-
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D   92 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERVDGILAD   92 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence            4788889999999987766665            6666777654   2345788888776652     445789999974


Q ss_pred             ccc--cc-------CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870           67 SSS--HE-------LPG-DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        67 ~~l--~~-------~~~-~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      ..+  ++       +.. ...|.....+|+|||++++..+.
T Consensus        93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            322  11       111 45788899999999999999875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=87.88  E-value=0.67  Score=39.20  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             CCCCcEEEEccCCCCcHHHHH-------------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEe
Q 023870            5 KMQSAVLALSEDKILPVSAVL-------------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS   65 (276)
Q Consensus         5 ~~g~~vL~v~~~~~~~~~~v~-------------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s   65 (276)
                      +.+.+||+...|.+.=+..+.                   +.+.++|+......+....+..++.... .....||+|++
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~  194 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS  194 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-ccccccccccc
Confidence            455667777777753222221                   4555666555544455566666665432 34568999999


Q ss_pred             ccccccCC-----------------h--HHHHHHHHHhccCCcEEEEEecC
Q 023870           66 ISSSHELP-----------------G--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        66 ~~~l~~~~-----------------~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                      +-.+....                 +  ..++..+.+.|+|||++++..+.
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            75432110                 0  23789999999999999888764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.85  E-value=0.36  Score=38.80  Aligned_cols=62  Identities=13%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             CCCCceeEEEeccccc----c---CC------h--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCC
Q 023870           55 VESFSIDTVLSISSSH----E---LP------G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  119 (276)
Q Consensus        55 ~~~~sfD~V~s~~~l~----~---~~------~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laG  119 (276)
                      ++++++|+|++.-...    .   ..      .  ...+++++|+|+|+|.+++....        .....+...+...|
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~--------~~~~~~~~~~~~~g   90 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--------FNCAFICQYLVSKG   90 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--------HHHHHHHHHHHHTT
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc--------hhhhhhhhhhhccc
Confidence            6788999988743211    0   11      1  45888999999999998765421        11124455677788


Q ss_pred             Ccchh
Q 023870          120 FLDAQ  124 (276)
Q Consensus       120 F~~v~  124 (276)
                      |....
T Consensus        91 ~~~~~   95 (256)
T d1g60a_          91 MIFQN   95 (256)
T ss_dssp             CEEEE
T ss_pred             ceeee
Confidence            87543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.71  E-value=0.42  Score=40.89  Aligned_cols=94  Identities=19%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEccCCCCcHHHHHHHH---------------HHHHHHhhhhCC-CCeEEEeccCCCCCCCCCceeEEEecc
Q 023870            4 GKMQSAVLALSEDKILPVSAVLNAI---------------RDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSIS   67 (276)
Q Consensus         4 ~~~g~~vL~v~~~~~~~~~~v~~~m---------------~~~A~~~~~~~~-~~v~~~~~d~~~lp~~~~sfD~V~s~~   67 (276)
                      .++|+.||++-.+.+.=.-.+.+.|               +...+++....+ .++.....+...++.....||.|+.=.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            4678888887655542222222222               122223333333 346677777777777788999998711


Q ss_pred             ------cc------cc-CC--------h--HHHHHHHHHhccCCcEEEEEecC
Q 023870           68 ------SS------HE-LP--------G--DQLLEEISRVLKPGGTILIYKKL   97 (276)
Q Consensus        68 ------~l------~~-~~--------~--~~~l~ei~rvLKPgG~l~i~~~~   97 (276)
                            ++      .| +.        .  .++|....+.|||||+++.++=+
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence                  11      11 11        1  46778899999999999888754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.16  E-value=0.67  Score=36.19  Aligned_cols=91  Identities=15%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             CCCcEEEEccCCCCc-HHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC----CCCCCceeEEEec
Q 023870            6 MQSAVLALSEDKILP-VSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQL----PVESFSIDTVLSI   66 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~-~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l----p~~~~sfD~V~s~   66 (276)
                      .|.+||++..|.+.- ++.+.            ..+.+.+++.+...+.  ++.++.+|+...    .-....||+|+.-
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            588899998887632 33333            5556666665544332  478888887542    2245689999986


Q ss_pred             cccccCChHHHHHHHHH--hccCCcEEEEEec
Q 023870           67 SSSHELPGDQLLEEISR--VLKPGGTILIYKK   96 (276)
Q Consensus        67 ~~l~~~~~~~~l~ei~r--vLKPgG~l~i~~~   96 (276)
                      -.+..-.-...+..+..  +|+++|.+++...
T Consensus       121 PPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         121 PPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            54332222667777754  7999998886543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=85.44  E-value=0.44  Score=38.89  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             HHHHHHHHhhhhCCC--CeEEEeccCCCC-C-C-----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870           27 AIRDLGDEAVEQCDP--QIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK   96 (276)
Q Consensus        27 ~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~-----~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~   96 (276)
                      ...+.|++.....+.  ++.++.+++... + +     ..++||+|+.-..   -.. ...+..+.+.|+|||.+++-+.
T Consensus        95 ~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1          95 ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             hhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccc---hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            344556666555544  488888987532 2 1     3568999998532   123 6788899999999999998764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=83.65  E-value=1.8  Score=34.24  Aligned_cols=57  Identities=7%  Similarity=-0.017  Sum_probs=40.2

Q ss_pred             CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870            6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (276)
Q Consensus         6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l   69 (276)
                      .|.+||+++.|.+.-+-...             +.+++.|+++.    ..+.++.+|+..++   +.||+|+++-.+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEehhhcC---CcceEEEeCccc
Confidence            37889999988874211111             66777777764    34788999998764   689999997554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=82.61  E-value=3.1  Score=34.44  Aligned_cols=88  Identities=15%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhhhhCCC--CeEEEeccCCCC-CCCCCceeEEEecccc-----------ccCC--------h-HHHHHH-H
Q 023870           26 NAIRDLGDEAVEQCDP--QIITQASSLSQL-PVESFSIDTVLSISSS-----------HELP--------G-DQLLEE-I   81 (276)
Q Consensus        26 ~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p~~~~sfD~V~s~~~l-----------~~~~--------~-~~~l~e-i   81 (276)
                      +..++.|++++...+.  .+.++.+++.+. +...+.||+|+++-..           .|-|        + -.++++ +
T Consensus       143 ~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~  222 (271)
T d1nv8a_         143 SKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF  222 (271)
T ss_dssp             HHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHH
Confidence            6667888888777655  366677777543 3334789999997421           0100        1 122323 5


Q ss_pred             HHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870           82 SRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (276)
Q Consensus        82 ~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~  121 (276)
                      .+.|+|||.+++-....     ..   +.+.+.+...||.
T Consensus       223 ~~~L~~~G~l~~Eig~~-----Q~---~~v~~l~~~~g~~  254 (271)
T d1nv8a_         223 GRYDTSGKIVLMEIGED-----QV---EELKKIVSDTVFL  254 (271)
T ss_dssp             HHCCCTTCEEEEECCTT-----CH---HHHTTTSTTCEEE
T ss_pred             HHhcCCCCEEEEEECHH-----HH---HHHHHHHHhCCEE
Confidence            67899999888665321     11   1444556667774