Citrus Sinensis ID: 023873

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MAPSSLKQSMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHcEEEEEEEccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEccccEccHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccc
MAPSSLKQSMQLLLFIALLSAAAmmprsvmaqncgcaaglccsrwgfcgtgddycgtgcqqgpcnpppptndvsvadivTPEFFNgilnqadascvgknfysRSAFLDALgsfsqfgrigteenSRREIAAFFAHVthetghfcsieeidgpskdycdeentqypcnpskgyygrgpiqlswnfnygpagnsigfdglnapetvandpvisFKTALWYWTNHVQSVMNQGFGATIRAINGalecdggnpstVQARIRYFTEYCSqlgvstgdnltc
MAPSSLKQSMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYcsqlgvstgdnltc
MAPSSLKQSMQlllfiallsaaaMMPRSVMAQNCGCAAGLCCSRWgfcgtgddycgtgcqqgpcnpppptnDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
**********QLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPC*******DVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGV********
************LLFIALLSAAAMMPRSV*A**CGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
********SMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
****SLKQSMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNP*******SVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
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iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPSSLKQSMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
P27054270 Endochitinase PR4 OS=Phas N/A no 0.913 0.933 0.734 1e-112
Q6K8R2271 Chitinase 6 OS=Oryza sati yes no 0.884 0.900 0.663 9e-96
Q7Y1Z0288 Chitinase 5 OS=Oryza sati no no 0.891 0.854 0.603 1e-90
O04138285 Chitinase 4 OS=Oryza sati no no 0.887 0.859 0.600 7e-89
Q06209268 Basic endochitinase CHB4 N/A no 0.942 0.970 0.555 3e-84
P29022280 Endochitinase A OS=Zea ma N/A no 0.884 0.871 0.578 9e-82
P42820288 Acidic endochitinase SP2 N/A no 0.963 0.923 0.536 2e-80
P29023269 Endochitinase B (Fragment N/A no 0.945 0.970 0.544 4e-80
P80052250 Acidic endochitinase OS=D N/A no 0.884 0.976 0.573 2e-77
P05315328 Endochitinase OS=Solanum N/A no 0.894 0.753 0.416 6e-50
>sp|P27054|CHI4_PHAVU Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1 Back     alignment and function desciption
 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/256 (73%), Positives = 223/256 (87%), Gaps = 4/256 (1%)

Query: 24  MMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCN--PPPPTNDVSVADIVTP 81
           M P++V AQNCGCA GLCCS++G+CGTG+DYCGTGCQQGPC    PPP+N+V+ ADI+T 
Sbjct: 16  MGPKNVSAQNCGCAEGLCCSQYGYCGTGEDYCGTGCQQGPCTTASPPPSNNVN-ADILTA 74

Query: 82  EFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETG 141
           +F NGI++QAD+ C GKNFY+R AFL AL S++ FGR+G+E++S+REIAA FAH THETG
Sbjct: 75  DFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETG 134

Query: 142 HFCSIEEIDGPSKDYCDEEN-TQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNA 200
           HFC IEEIDG SKDYCDEE+  QYPC+ SKGY+GRGPIQLSWNFNYGPAG++  FDGL A
Sbjct: 135 HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGA 194

Query: 201 PETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFT 260
           PETV+ND V+SFKTALWYW  HV+ V+NQGFGATIRAINGALECDG NP+TVQAR+ Y+T
Sbjct: 195 PETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYT 254

Query: 261 EYCSQLGVSTGDNLTC 276
           EYC QLGV+TGDNLTC
Sbjct: 255 EYCRQLGVATGDNLTC 270
Defense against chitin containing fungal pathogens.
Phaseolus vulgaris (taxid: 3885)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q6K8R2|CHI6_ORYSJ Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y1Z0|CHI5_ORYSJ Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1 Back     alignment and function description
>sp|O04138|CHI4_ORYSJ Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2 Back     alignment and function description
>sp|Q06209|CHI4_BRANA Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2 Back     alignment and function description
>sp|P29022|CHIA_MAIZE Endochitinase A OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|P42820|CHIP_BETVU Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1 Back     alignment and function description
>sp|P29023|CHIB_MAIZE Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|P80052|CHIT_DIOJA Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2 Back     alignment and function description
>sp|P05315|CHIT_SOLTU Endochitinase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
374719241275 chitinase 7 [Populus x canadensis] 0.996 1.0 0.771 1e-125
224121824275 predicted protein [Populus trichocarpa] 0.989 0.992 0.769 1e-125
225434050274 PREDICTED: endochitinase PR4 [Vitis vini 0.992 1.0 0.75 1e-123
225434058274 PREDICTED: endochitinase PR4 [Vitis vini 0.992 1.0 0.746 1e-122
147859508274 hypothetical protein VITISV_009137 [Viti 0.992 1.0 0.746 1e-122
224146527258 predicted protein [Populus trichocarpa] 0.923 0.988 0.792 1e-121
222139394272 class IV chitinase [Pyrus pyrifolia] 0.963 0.977 0.75 1e-118
15232509273 chitinase [Arabidopsis thaliana] gi|7288 0.989 1.0 0.713 1e-115
2597826274 class IV chitinase [Arabidopsis thaliana 0.989 0.996 0.707 1e-113
261824327267 chitinase [Lactuca sativa] 0.967 1.0 0.704 1e-113
>gi|374719241|gb|AEZ67306.1| chitinase 7 [Populus x canadensis] Back     alignment and taxonomy information
 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/276 (77%), Positives = 244/276 (88%), Gaps = 1/276 (0%)

Query: 1   MAPSSLKQSMQLLLFIALLSAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQ 60
           MAPS+ K  + ++L + +L A + +P  V+AQNCGCAA  CCSRWG+CGTG+DYCGTGCQ
Sbjct: 1   MAPSTRKSQLVIVL-LGILIAGSAVPSHVVAQNCGCAADECCSRWGYCGTGNDYCGTGCQ 59

Query: 61  QGPCNPPPPTNDVSVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIG 120
           +G C P  PTNDVSV DIVTPEFF GIL+QAD+SC GKNFYSR AFL+AL S+S+FGRIG
Sbjct: 60  EGQCFPAAPTNDVSVPDIVTPEFFGGILDQADSSCAGKNFYSRDAFLEALNSYSRFGRIG 119

Query: 121 TEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
           + ++SRREIAAFFAHVTHETGHFC IEEI+GPS+DYCDE NTQYPCNP KGYYGRGPIQL
Sbjct: 120 SVDDSRREIAAFFAHVTHETGHFCYIEEINGPSRDYCDEGNTQYPCNPDKGYYGRGPIQL 179

Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAING 240
           SWNFNYGPAG SIGFDGLN+PETVANDPVISFKTALWYWTN VQ V++QGFGATIRAING
Sbjct: 180 SWNFNYGPAGESIGFDGLNSPETVANDPVISFKTALWYWTNSVQPVISQGFGATIRAING 239

Query: 241 ALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
           ALECDG NP+TVQAR+ Y+T+YC+QLGV+ GDNLTC
Sbjct: 240 ALECDGANPATVQARVGYYTDYCNQLGVAPGDNLTC 275

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121824|ref|XP_002330662.1| predicted protein [Populus trichocarpa] gi|222872266|gb|EEF09397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434050|ref|XP_002274537.1| PREDICTED: endochitinase PR4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434058|ref|XP_002274758.1| PREDICTED: endochitinase PR4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859508|emb|CAN79254.1| hypothetical protein VITISV_009137 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146527|ref|XP_002326039.1| predicted protein [Populus trichocarpa] gi|222862914|gb|EEF00421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222139394|gb|ACM45716.1| class IV chitinase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|15232509|ref|NP_191010.1| chitinase [Arabidopsis thaliana] gi|7288020|emb|CAB81807.1| class IV chitinase (CHIV) [Arabidopsis thaliana] gi|34146830|gb|AAQ62423.1| At3g54420 [Arabidopsis thaliana] gi|51971118|dbj|BAD44251.1| class IV chitinase (CHIV) [Arabidopsis thaliana] gi|332645707|gb|AEE79228.1| chitinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2597826|emb|CAA74930.1| class IV chitinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|261824327|gb|ACX94236.1| chitinase [Lactuca sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2096159273 EP3 "homolog of carrot EP3-3 c 0.891 0.901 0.703 2e-95
UNIPROTKB|O04138285 Cht4 "Chitinase 4" [Oryza sati 0.891 0.863 0.552 1.5e-76
TAIR|locus:2043994264 AT2G43590 [Arabidopsis thalian 0.884 0.924 0.522 1.4e-69
TAIR|locus:2044009265 AT2G43580 [Arabidopsis thalian 0.884 0.920 0.492 9.7e-64
TAIR|locus:2044024277 CHI ""chitinase, putative"" [A 0.880 0.877 0.484 2.4e-60
TAIR|locus:2043934281 AT2G43610 [Arabidopsis thalian 0.706 0.693 0.463 2.6e-55
TAIR|locus:2043919283 AT2G43620 [Arabidopsis thalian 0.887 0.865 0.402 1.2e-49
UNIPROTKB|Q7DNA1340 Cht2 "Chitinase 2" [Oryza sati 0.518 0.420 0.452 6.5e-45
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.525 0.533 0.443 1.1e-42
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.521 0.541 0.45 3.6e-42
TAIR|locus:2096159 EP3 "homolog of carrot EP3-3 chitinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 173/246 (70%), Positives = 197/246 (80%)

Query:    31 AQNCGCAAGLCCSRWXXXXXXXXXXXXXXXXXXXXXXXXXXDVSVADIVTPEFFNGILNQ 90
             AQNCGC++ LCCS++                           VSVA+IVT EFFNGI++Q
Sbjct:    28 AQNCGCSSELCCSQFGFCGNTSDYCGVGCQQGPCFAPPPANGVSVAEIVTQEFFNGIISQ 87

Query:    91 ADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEID 150
             A +SC G  FYSR AFL+AL S+S+FGR+G+ ++SRREIAAFFAHVTHETGHFC IEEID
Sbjct:    88 AASSCAGNRFYSRGAFLEALDSYSRFGRVGSTDDSRREIAAFFAHVTHETGHFCYIEEID 147

Query:   151 GPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVI 210
             G SKDYCDE  TQYPCNP+KGYYGRGPIQLSWNFNYGPAG +IGFDGLNAPETVA DPVI
Sbjct:   148 GASKDYCDENATQYPCNPNKGYYGRGPIQLSWNFNYGPAGTAIGFDGLNAPETVATDPVI 207

Query:   211 SFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVST 270
             SFKTALWYWTN VQ V++QGFGATIRAINGALECDG N +TVQAR+RY+T+YC QLGV  
Sbjct:   208 SFKTALWYWTNRVQPVISQGFGATIRAINGALECDGANTATVQARVRYYTDYCRQLGVDP 267

Query:   271 GDNLTC 276
             G+NLTC
Sbjct:   268 GNNLTC 273
GO:0004568 "chitinase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0008061 "chitin binding" evidence=IEA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0010262 "somatic embryogenesis" evidence=IEP
GO:0005618 "cell wall" evidence=IDA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
GO:0009626 "plant-type hypersensitive response" evidence=TAS
UNIPROTKB|O04138 Cht4 "Chitinase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2043994 AT2G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044009 AT2G43580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044024 CHI ""chitinase, putative"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043934 AT2G43610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043919 AT2G43620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29023CHIB_MAIZE3, ., 2, ., 1, ., 1, 40.54440.94560.9702N/Ano
P29022CHIA_MAIZE3, ., 2, ., 1, ., 1, 40.57810.88400.8714N/Ano
Q6K8R2CHI6_ORYSJ3, ., 2, ., 1, ., 1, 40.66390.88400.9003yesno
P27054CHI4_PHAVU3, ., 2, ., 1, ., 1, 40.73430.91300.9333N/Ano
Q06209CHI4_BRANA3, ., 2, ., 1, ., 1, 40.55510.94200.9701N/Ano
P42820CHIP_BETVU3, ., 2, ., 1, ., 1, 40.53630.96370.9236N/Ano
P80052CHIT_DIOJA3, ., 2, ., 1, ., 1, 40.57370.88400.976N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.140.991
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-106
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 6e-98
smart0027038 smart00270, ChtBD1, Chitin binding domain 2e-08
pfam0018738 pfam00187, Chitin_bind_1, Chitin recognition prote 3e-08
cd00442105 cd00442, lysozyme_like, lysozyme_like domain 9e-08
cd0003539 cd00035, ChtBD1, Hevein or type 1 chitin binding d 1e-07
cd0692140 cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chit 7e-07
cd1161844 cd11618, ChtBD1_1, Hevein or type 1 chitin binding 2e-04
COG3179206 COG3179, COG3179, Predicted chitinase [General fun 0.001
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information 
 Score =  307 bits (788), Expect = e-106
 Identities = 109/230 (47%), Positives = 128/230 (55%), Gaps = 32/230 (13%)

Query: 79  VTPEFFNGILNQA-DASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVT 137
           VT   F GI +   D+ C  K FY+  AF+ A  SF  FG  G ++  +REIAAFFAH +
Sbjct: 1   VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTS 60

Query: 138 HETGHFCSIEEIDGPSKDYCDEENT----------QYPCNPSKGYYGRGPIQLSWNFNYG 187
           HETG  C I      +  YCD+  T          Q+PC P K YYGRGPIQLSWN+NYG
Sbjct: 61  HETGGGCYIAPDGPYAWGYCDKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYG 120

Query: 188 PAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQS---------------------V 226
           PAG ++GFD LN P+ VA DPV+SFKTA+W+W                            
Sbjct: 121 PAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPKPSCHDVITGTWTPSAADTAAG 180

Query: 227 MNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
              GFGAT   ING LEC GGNP  VQ RI Y+  YC  LGVS GDNL C
Sbjct: 181 RGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230

Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information
>gnl|CDD|214593 smart00270, ChtBD1, Chitin binding domain Back     alignment and domain information
>gnl|CDD|143950 pfam00187, Chitin_bind_1, Chitin recognition protein Back     alignment and domain information
>gnl|CDD|238249 cd00442, lysozyme_like, lysozyme_like domain Back     alignment and domain information
>gnl|CDD|211311 cd00035, ChtBD1, Hevein or type 1 chitin binding domain Back     alignment and domain information
>gnl|CDD|211312 cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains Back     alignment and domain information
>gnl|CDD|211316 cd11618, ChtBD1_1, Hevein or type 1 chitin binding domain; filamentous ascomycete subfamily Back     alignment and domain information
>gnl|CDD|225720 COG3179, COG3179, Predicted chitinase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG4742286 consensus Predicted chitinase [General function pr 100.0
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
COG3179206 Predicted chitinase [General function prediction o 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 99.52
PF0018740 Chitin_bind_1: Chitin recognition protein; InterPr 99.12
smart0027038 ChtBD1 Chitin binding domain. 98.79
cd0003540 ChtBD1 Chitin binding domain, involved in recognit 98.46
cd0691851 ChtBD1_like Domain observed in several metazoan pr 94.99
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-68  Score=482.97  Aligned_cols=246  Identities=51%  Similarity=1.006  Sum_probs=223.2

Q ss_pred             HHHHhcccccccccCCCCCCCcccccccccCCcccccCCcccCCCCCC-CCCCCCCcccccchhhHhhhhcccCcc-ccC
Q 023873           20 SAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPP-PPTNDVSVADIVTPEFFNGILNQADAS-CVG   97 (276)
Q Consensus        20 ~~~~~~~~~~~~~~c~c~~~~ccs~~g~cg~~~~~c~~~cq~~~c~~~-~~~~~~sv~~iIT~~~fn~i~p~a~~~-c~~   97 (276)
                      ++++..+.++.+|+|+ +..          ++.+||+.+|+++||..+ ++++..+++++||+++|+.||++.+.+ |++
T Consensus        17 ~~~~~~~~~~~~q~~~-~~~----------~~~~~~~~~c~~g~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~   85 (286)
T KOG4742|consen   17 FLLLQSSSTVASQNCG-ASN----------TTPPYCKFGCGPGPCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPA   85 (286)
T ss_pred             HHHHHHHHhhhcccCC-CCc----------cccccccCCCCCCCCCCCCCCCCcccccccccHHHHHHHhccccCCCCCC
Confidence            4556667888999996 333          778999999999999876 455788999999999999999997776 999


Q ss_pred             CCcccHHHHHHHhhhhhhcCCCCCCCCCHHHHHhhhccccccc---------C----CCccccccCCCCccccccCCCC-
Q 023873           98 KNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHET---------G----HFCSIEEIDGPSKDYCDEENTQ-  163 (276)
Q Consensus        98 ~~fyt~~~fi~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET---------~----~f~~~~E~~~~~~~y~~~~n~~-  163 (276)
                      ++||||++|+.|++.||+||.+|+..+.+||+|+||||+.|||         |    +|++.||+..+...||+.++.. 
T Consensus        86 ~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~  165 (286)
T KOG4742|consen   86 KGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQIT  165 (286)
T ss_pred             CCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceE
Confidence            9999999999999999999999999999999999999999999         6    8999999988557899998776 


Q ss_pred             CCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhhhhhhh-------ccCccccce
Q 023873          164 YPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVM-------NQGFGATIR  236 (276)
Q Consensus       164 ~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~-------~~gf~~~t~  236 (276)
                      |||.+|+.|+|||+|||+|||||+++++++|+|||+|||+|++||.+||++|+||||+....+.       .++||.||+
T Consensus       166 yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~~~p~~~~~a~~~~~gFGaTt~  245 (286)
T KOG4742|consen  166 YPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWMTPVRPVLNDFAAYDTPGFGATTR  245 (286)
T ss_pred             eecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeeccCCchhhhhhhcccCCCcchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999754333       358999999


Q ss_pred             eccCccccCCCCchh-HHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873          237 AINGALECDGGNPST-VQARIRYFTEYCSQLGVSTGDNLTC  276 (276)
Q Consensus       237 iINGg~ec~~~~~~~-~~~R~~~y~~~~~~Lgv~~g~nl~c  276 (276)
                      +|||++||++++.++ .++||++|+.+|++|||.||+||+|
T Consensus       246 ~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC  286 (286)
T KOG4742|consen  246 AINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC  286 (286)
T ss_pred             hhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence            999999999988554 4559999999999999999999999

>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e Back     alignment and domain information
>smart00270 ChtBD1 Chitin binding domain Back     alignment and domain information
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K Back     alignment and domain information
>cd06918 ChtBD1_like Domain observed in several metazoan proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 6e-56
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 2e-43
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 3e-43
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 3e-41
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 1e-39
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 1e-39
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 6e-39
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 1e-38
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 2e-38
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 3e-37
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 3e-36
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 8e-36
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 6e-35
2dkv_A309 Crystal Structure Of Class I Chitinase From Oryza S 3e-34
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (544), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 138/207 (66%), Gaps = 7/207 (3%)
Query: 74  SVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
           SV  I++  FFNG+   A +SC GK FY+ +AF+ A  ++S FG  G+ +  +RE+AAFF
Sbjct: 1   SVGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFF 60
Query: 134 AHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSI 193
           A+V HETG  C I E + P  +YC   +T +PC   K Y+GRGP+QLSWN+NYG AG SI
Sbjct: 61  ANVMHETGGLCYINEKN-PPINYCQSSST-WPCTSGKSYHGRGPLQLSWNYNYGAAGKSI 118
Query: 194 GFDGLNAPETVANDPVISFKTALWYWTN----HVQSVMNQGFGATIRAINGALECDGGNP 249
           GFDGLN PE V  D  ISFKTA+W+W      H      QGFG TI+AIN ++EC+GGN 
Sbjct: 119 GFDGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAIN-SMECNGGNS 177
Query: 250 STVQARIRYFTEYCSQLGVSTGDNLTC 276
             V +R+ Y+ + CSQLGV  G N++C
Sbjct: 178 GEVSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2z37_A244 Chitinase; family 19, conformational changes, hydr 3e-69
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 6e-68
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 5e-67
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 7e-65
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 6e-63
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 7e-63
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 8e-61
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 1e-09
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 6e-08
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 2e-07
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 2e-05
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 6e-07
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 5e-04
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 1e-06
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 5e-06
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 5e-05
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 1e-04
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 2e-04
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 7e-04
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  213 bits (542), Expect = 3e-69
 Identities = 81/236 (34%), Positives = 114/236 (48%), Gaps = 34/236 (14%)

Query: 75  VADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
           ++ I++ + F  +L +  D  C    F++  AF+ A  SF  FG  G     ++EIAAFF
Sbjct: 2   LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFF 61

Query: 134 AHVTHETGHFCSIEEID------------GPSKDYCDEENTQYPCNPSKGYYGRGPIQLS 181
              +HET    S                   S  +CD  N ++PC P K YYGRGP+ LS
Sbjct: 62  GQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLS 121

Query: 182 WNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMN------------- 228
           WN+NYGP G  +G + L  P+  ++DPVI+FKTA+W+W        +             
Sbjct: 122 WNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSA 181

Query: 229 --------QGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
                    G+G     ING LEC G + + VQ RI ++T YC   GV  G N+ C
Sbjct: 182 ADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 237
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Length = 44 Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Length = 43 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Length = 126 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Length = 126 Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Length = 89 Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Length = 89 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Length = 82 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Length = 82 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1p9g_A41 EAFP 2; antifungal peptide, atomic resolution, ant 99.25
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 98.96
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 98.95
1mmc_A30 AC-AMP2, antimicrobial peptide 2; antifungal antim 98.65
2kus_A35 SM-AMP-1.1A; plant antimicrobial peptide, chitin-b 98.5
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 98.31
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 98.29
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 98.26
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 98.12
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 98.04
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 97.98
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 97.94
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 97.79
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-80  Score=569.83  Aligned_cols=238  Identities=46%  Similarity=1.018  Sum_probs=220.7

Q ss_pred             CCCCCcccccccccCCcccccCCcccCCCCCC-----C--CCCCCCcccccchhhHhhhhccc-CccccCCCcccHHHHH
Q 023873           36 CAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPP-----P--PTNDVSVADIVTPEFFNGILNQA-DASCVGKNFYSRSAFL  107 (276)
Q Consensus        36 c~~~~ccs~~g~cg~~~~~c~~~cq~~~c~~~-----~--~~~~~sv~~iIT~~~fn~i~p~a-~~~c~~~~fyt~~~fi  107 (276)
                      ||.++|||+|||||++++||+.|||++ |...     +  +.+..+|+++||+++|++|||+. +..||+++||||++||
T Consensus        13 c~~~~Ccs~~G~Cg~t~~~Cg~gcq~~-c~~~~~~~~~~~~~~~~~v~~iit~~~f~~~~~~rn~~~c~~~~fyty~~fi   91 (309)
T 2dkv_A           13 CPNCLCCSRWGWCGTTSDFCGDGCQSQ-CSGCGPTPTPTPPSPSDGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFL   91 (309)
T ss_dssp             CGGGCEECTTSBEESSHHHHSTTCCBC-SSCC------------CCGGGTSCHHHHHHHTTTTTCTTCTTTTCSCHHHHH
T ss_pred             CCCCCcCcccccccCChHHhhcccccc-CCCCCCCCCCCCCCCCcchhhhccHHHHHHHhhcccccCCCcCCcccHHHHH
Confidence            999999999999999999999999995 9765     1  12357899999999999999996 4579999999999999


Q ss_pred             HHhhhhhhcCCCCCCCCCHHHHHhhhcccccccCC-------------CccccccCCCCccccccCCCCCCCCCCCCccc
Q 023873          108 DALGSFSQFGRIGTEENSRREIAAFFAHVTHETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYG  174 (276)
Q Consensus       108 ~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET~~-------------f~~~~E~~~~~~~y~~~~n~~~~~~dG~~Y~G  174 (276)
                      +|+++||+|+++|+..++|+|+||||||++|||++             |+++||++.. ..||+.. .+|||+||++|||
T Consensus        92 ~Aa~~fp~F~~tG~~~~~krelAaFLAq~~HETggg~~~~~~~~y~wG~~~~~E~~~~-~~Yc~~~-~~~pcgdG~~Y~G  169 (309)
T 2dkv_A           92 AAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPP-SDYCQPS-PEWPCAPGRKYYG  169 (309)
T ss_dssp             HHHHTCTTTTCSSSHHHHHHHHHHHHHHHHHHHCCCCTTCTTCGGGCTTCCSBCSSCS-CCCCCCC-SSSCCCTTCCCCC
T ss_pred             HHHHhhhhhcccCCccccHHHHHHHHhhcchhcCCCcccCCCccccccceeeeeecCC-CCCcCCC-CCcccCCCCeeec
Confidence            99999999999999888999999999999999985             9999999865 6899876 5899999999999


Q ss_pred             CCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHh------hhhhhhc---------------cCccc
Q 023873          175 RGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTN------HVQSVMN---------------QGFGA  233 (276)
Q Consensus       175 RG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~------~~~~~~~---------------~gf~~  233 (276)
                      ||+||||||+||+++++++|+||++|||||++||++||++|+||||+      ++|++|.               +||+.
T Consensus       170 RG~IQLT~~~NY~~~g~~lg~DLl~nPdlVa~dp~~A~~sA~WFW~t~~~~kps~hdvi~g~w~ps~aD~~a~~~~gfg~  249 (309)
T 2dkv_A          170 RGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGV  249 (309)
T ss_dssp             BTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHHCCBTTBCCHHHHHTTCCCCCHHHHHTTCCSSHHH
T ss_pred             CCcccccchhhHHHHHHHhCCccccCHHHHhcCHHHHHHhhhhheeeCCCCCCChhhhhhcccCcchhhhhcccCCChhh
Confidence            99999999999999999999999999999999999999999999998      4788873               68999


Q ss_pred             cceeccCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873          234 TIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC  276 (276)
Q Consensus       234 ~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c  276 (276)
                      ||+|||||+||++++++++++|+++|++++++|||+||+||+|
T Consensus       250 ~t~iINGG~EC~~g~~~~~~dRi~~y~r~~~~Lgv~~g~nl~C  292 (309)
T 2dkv_A          250 ITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC  292 (309)
T ss_dssp             HHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHTTCCCCSCCCC
T ss_pred             eeeEEeCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Back     alignment and structure
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Back     alignment and structure
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media} Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 6e-78
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 8e-78
d9wgaa152 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Whea 3e-13
d9wgaa343 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wh 3e-12
d9wgaa442 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {W 4e-12
d9wgaa234 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Whe 6e-12
d1ulka241 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phy 2e-09
d1uhaa142 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phyt 4e-09
d1en2a145 g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Ur 7e-09
d1uhaa240 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phy 1e-08
d1q9ba_43 g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 39 6e-07
d1en2a241 g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (U 4e-06
d1p9ga_41 g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tr 0.001
d1mmca_30 g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tas 0.002
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  234 bits (598), Expect = 6e-78
 Identities = 90/237 (37%), Positives = 119/237 (50%), Gaps = 35/237 (14%)

Query: 74  SVADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAF 132
           SV+ IV+   F+ +L ++ D +C  K FY+  AF+ A  +F  FG  G+ +  +RE+AAF
Sbjct: 1   SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60

Query: 133 FAHVTHETGHFCSIEEI------------DGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
            A  +HET    +                 G S DYC   + Q+PC P K YYGRGPIQL
Sbjct: 61  LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQL 119

Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMN------------ 228
           S N+NYGPAG +IG D L  P+ VA D  + FKTA+W+W        +            
Sbjct: 120 SHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPS 179

Query: 229 ---------QGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
                     GFG     ING +EC  G  S V  RI ++  YC  LGV  G+NL C
Sbjct: 180 GADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 52 Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 43 Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 42 Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 34 Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 41 Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 42 Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 40 Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Length = 43 Back     information, alignment and structure
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]} Length = 41 Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Length = 30 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
d9wgaa234 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.41
d9wgaa152 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.13
d9wgaa343 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.07
d1uhaa142 Lectin-D {American pokeweed (Phytolacca americana) 99.0
d9wgaa442 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.0
d1en2a145 Isolectin VI {Stinging nettle (Urtica dioica), UDA 98.96
d1uhaa240 Lectin-D {American pokeweed (Phytolacca americana) 98.88
d1q9ba_43 Hevein {Hevea brasiliensis [TaxId: 3981]} 98.86
d1ulka241 Lectin-C {American pokeweed (Phytolacca americana) 98.85
d1en2a241 Isolectin VI {Stinging nettle (Urtica dioica), UDA 98.55
d1mmca_30 Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth 98.46
d1p9ga_41 Antifungal peptide 2 {Hardy rubber tree (Eucommia 98.03
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.3e-67  Score=472.78  Aligned_cols=202  Identities=45%  Similarity=0.885  Sum_probs=186.4

Q ss_pred             CcccccchhhHhhhhccc-CccccCCCcccHHHHHHHhhhhhhcCCCCCCCCCHHHHHhhhcccccccCCCccccccC--
Q 023873           74 SVADIVTPEFFNGILNQA-DASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEID--  150 (276)
Q Consensus        74 sv~~iIT~~~fn~i~p~a-~~~c~~~~fyt~~~fi~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET~~f~~~~E~~--  150 (276)
                      +|++|||+++||+|||+. +..||+++||||++||+|+++||+|+++|+++++|+|+|+||||++|||++|...+|..  
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~~~   80 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAF   80 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTSTTTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGG
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhchhhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCCch
Confidence            589999999999999995 45799999999999999999999999999999999999999999999999877766642  


Q ss_pred             ----------CCCccccccCCCCCCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHH
Q 023873          151 ----------GPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWT  220 (276)
Q Consensus       151 ----------~~~~~y~~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~  220 (276)
                                +....||+.+ .+|||+||++|||||+||||||+||+++++++|+||++|||+|++||++||++|+||||
T Consensus        81 ~~g~~~~~e~~~~~~yc~~~-~~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~  159 (243)
T d2baaa_          81 AWGYCFKQERGASSDYCTPS-AQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWM  159 (243)
T ss_dssp             GCTTCCSBCCSCCCCCCCCC-SSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHH
T ss_pred             hhcccchhccCCccccccCC-CCCCCCCCCcccCCCcccccchhhHHHHHHHhCCCccccccceeeccHHHHHHHHHHHh
Confidence                      1225788764 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             h------hhhhhh---------------ccCccccceeccCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873          221 N------HVQSVM---------------NQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC  276 (276)
Q Consensus       221 ~------~~~~~~---------------~~gf~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c  276 (276)
                      +      ++|++|               .+||+.||+|||||+||++++++++++|+++|+++|++|||+||+||+|
T Consensus       160 t~~~~~~s~~~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~ec~~~~~~~~~dRi~~Y~~~~~~lgv~~g~nl~C  236 (243)
T d2baaa_         160 TAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC  236 (243)
T ss_dssp             CCCTTSCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCC
T ss_pred             cCCCCCccHHHHHhccCCcccchhhhccCCCcceEEEEEECcccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCC
Confidence            9      367766               2579999999999999999999999999999999999999999999999
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]} Back     information, alignment and structure