Citrus Sinensis ID: 023877

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MSNANSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
ccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEEEcccHHHHHccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHcccEEEEccccccccccccccHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccccccHHHHHHHHcccccccHHHHHHHEEEEEcc
ccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHccccccccHHHHHHHHHHHcHHHccccccccEEcHHHHHHccccEEEEccccccccccccccccHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHcHHHHHHHHHHHHHHHHccccccccEEccccHHHHHHHccccccccEEEEEcccccHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc
msnansnnsnstdtapsdrpvrvyADGIYDLFHFGHARSLEQakksfpntyllvgccndetthkfkgktvmteDERYESLrhckwvdevipdapwvvtqefldkhqidfvahdslpyadasgagkDVYEFVKAAGkfketkrtdgistsDIIMRIVKDYNQYVMRnldrgysrkdlgvsyvkEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKafctfpfpfpvfVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
msnansnnsnstdtapsdrpVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNdetthkfkgktvmtEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAagkfketkrtdgistsdiiMRIVKDYNQYVmrnldrgysrkdlgvsyvkekrlrvNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
MsnansnnsnstdtapsdRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMklkklqekvkqqqervgekvFALLCHSIKAFCTfpfpfpvfvfLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
********************VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLK***********RVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLIL**
**********************VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYV********************************************************************VFLDASWRAFDLSYGI*****************ATFMLLLLILRR
****************SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKL*********RVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
****************SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
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MSNANSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKxxxxxxxxxxxxxxxxxxxxxVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLVLKNGRLMSFGATFMLLLLILRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q9Y5K3369 Choline-phosphate cytidyl yes no 0.702 0.525 0.632 3e-69
Q9QZC4369 Choline-phosphate cytidyl yes no 0.702 0.525 0.627 2e-68
Q811Q9369 Choline-phosphate cytidyl yes no 0.702 0.525 0.627 2e-68
O74975362 Probable choline-phosphat yes no 0.670 0.511 0.592 2e-62
P49585367 Choline-phosphate cytidyl no no 0.608 0.457 0.623 4e-61
P19836367 Choline-phosphate cytidyl no no 0.608 0.457 0.623 6e-61
P49586367 Choline-phosphate cytidyl no no 0.608 0.457 0.623 9e-61
P49584367 Choline-phosphate cytidyl no no 0.630 0.474 0.596 3e-60
P13259424 Choline-phosphate cytidyl yes no 0.677 0.441 0.513 1e-57
P49583362 Putative choline-phosphat yes no 0.644 0.491 0.538 5e-55
>sp|Q9Y5K3|PCY1B_HUMAN Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 153/196 (78%), Gaps = 2/196 (1%)

Query: 15  APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTED 74
            P+DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E 
Sbjct: 71  TPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEA 130

Query: 75  ERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA 134
           ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K A
Sbjct: 131 ERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEA 188

Query: 135 GKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKK 194
           G F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EKR R   ++ K
Sbjct: 189 GMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDK 248

Query: 195 LQEKVKQQQERVGEKV 210
           ++EKVK  +ER  E V
Sbjct: 249 MKEKVKNVEERSKEFV 264
Controls phosphatidylcholine synthesis.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 5
>sp|Q9QZC4|PCY1B_RAT Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1 Back     alignment and function description
>sp|Q811Q9|PCY1B_MOUSE Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2 Back     alignment and function description
>sp|O74975|PCY1_SCHPO Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3 Back     alignment and function description
>sp|P49585|PCY1A_HUMAN Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2 Back     alignment and function description
>sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2 Back     alignment and function description
>sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1 Back     alignment and function description
>sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1 Back     alignment and function description
>sp|P13259|PCY1_YEAST Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCT1 PE=1 SV=2 Back     alignment and function description
>sp|P49583|PCY1_CAEEL Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
224139560316 predicted protein [Populus trichocarpa] 0.775 0.677 0.859 1e-106
449456522332 PREDICTED: choline-phosphate cytidylyltr 0.746 0.620 0.870 1e-105
296087533305 unnamed protein product [Vitis vinifera] 0.753 0.681 0.875 1e-104
359475702364 PREDICTED: choline-phosphate cytidylyltr 0.753 0.571 0.875 1e-104
1418127331 CTP:phosphocholine cytidylyltransferase 0.75 0.625 0.845 1e-103
1657382285 cholinephosphate cytidylyltransferase [P 0.739 0.715 0.852 1e-102
297822987331 CTP:phosphocholine cytidylyltransferase 0.75 0.625 0.840 1e-102
1418125329 CTP:phosphocholine cytidylyltransferase 0.713 0.598 0.873 1e-102
1416514326 CTP:phosphocholine cytidylyltransferase 0.753 0.638 0.832 1e-102
147777300331 hypothetical protein VITISV_019065 [Viti 0.728 0.607 0.880 1e-102
>gi|224139560|ref|XP_002323169.1| predicted protein [Populus trichocarpa] gi|222867799|gb|EEF04930.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/214 (85%), Positives = 199/214 (92%)

Query: 3   NANSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT 62
           + +SN+  ST    SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCND+TT
Sbjct: 10  SCHSNSDPSTLPPSSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDDTT 69

Query: 63  HKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASG 122
           HK+KGKTVMTEDERYESLRHCKWVDEVIPDAPWV+ QEFLDKH ID+VAHDSLPYADASG
Sbjct: 70  HKYKGKTVMTEDERYESLRHCKWVDEVIPDAPWVIDQEFLDKHNIDYVAHDSLPYADASG 129

Query: 123 AGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVK 182
           AGKDVYEFVK  G+FKETKRTDGISTSDIIMRIVKDYNQYV+RNLDRGYSRK+LGVSYVK
Sbjct: 130 AGKDVYEFVKKVGRFKETKRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVK 189

Query: 183 EKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCH 216
           EKRLRVNM+LKKLQEKVK+QQE+VGEK+  +  H
Sbjct: 190 EKRLRVNMRLKKLQEKVKEQQEKVGEKIQIVTMH 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449456522|ref|XP_004145998.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Cucumis sativus] gi|449519894|ref|XP_004166969.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296087533|emb|CBI34122.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475702|ref|XP_002266477.2| PREDICTED: choline-phosphate cytidylyltransferase B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|1418127|dbj|BAA09642.1| CTP:phosphocholine cytidylyltransferase [Brassica napus] Back     alignment and taxonomy information
>gi|1657382|emb|CAA70317.1| cholinephosphate cytidylyltransferase [Pisum sativum] Back     alignment and taxonomy information
>gi|297822987|ref|XP_002879376.1| CTP:phosphocholine cytidylyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297325215|gb|EFH55635.1| CTP:phosphocholine cytidylyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|1418125|dbj|BAA09571.1| CTP:phosphocholine cytidylyltransferase [Brassica napus] Back     alignment and taxonomy information
>gi|1416514|dbj|BAA09644.1| CTP:phosphocholine cytidylyltransferase [Brassica napus] Back     alignment and taxonomy information
>gi|147777300|emb|CAN64609.1| hypothetical protein VITISV_019065 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2062591332 CCT1 "phosphorylcholine cytidy 0.623 0.518 0.901 2.1e-84
TAIR|locus:2129705304 CCT2 "phosphorylcholine cytidy 0.619 0.562 0.872 1.2e-81
ZFIN|ZDB-GENE-061220-4343 pcyt1ba "phosphate cytidylyltr 0.608 0.489 0.670 7.9e-62
DICTYBASE|DDB_G0290229416 DDB_G0290229 "cholinephosphate 0.605 0.401 0.680 8.1e-60
UNIPROTKB|Q9Y5K3369 PCYT1B "Choline-phosphate cyti 0.605 0.452 0.668 2.2e-59
UNIPROTKB|F1NQZ5340 PCYT1B "Uncharacterized protei 0.605 0.491 0.662 3.5e-59
UNIPROTKB|E2RFH6321 PCYT1B "Uncharacterized protei 0.605 0.520 0.662 4.5e-59
UNIPROTKB|E2RFX3357 PCYT1B "Uncharacterized protei 0.605 0.467 0.662 4.5e-59
UNIPROTKB|F1SPY1369 LOC100152643 "Uncharacterized 0.605 0.452 0.662 4.5e-59
UNIPROTKB|K7GM95354 LOC100152643 "Uncharacterized 0.605 0.471 0.662 4.5e-59
TAIR|locus:2062591 CCT1 "phosphorylcholine cytidylyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 156/173 (90%), Positives = 167/173 (96%)

Query:    19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPN-TYLLVGCCNDETTHKFKGKTVMTEDERY 77
             RPVRVYADGIYDLFHFGHARSLEQAK +FPN TYLLVGCCNDETTHK+KG+TVMT +ERY
Sbjct:    33 RPVRVYADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKGRTVMTAEERY 92

Query:    78 ESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKF 137
             ESLRHCKWVDEVIPDAPWVV QEFLDKHQID+VAHDSLPYAD+SGAGKDVYEFVK  G+F
Sbjct:    93 ESLRHCKWVDEVIPDAPWVVNQEFLDKHQIDYVAHDSLPYADSSGAGKDVYEFVKKVGRF 152

Query:   138 KETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNM 190
             KET+RT+GISTSDIIMRIVKDYNQYVMRNLDRGYSR+DLGVS+VKEKRLRVNM
Sbjct:   153 KETQRTEGISTSDIIMRIVKDYNQYVMRNLDRGYSREDLGVSFVKEKRLRVNM 205
GO:0003824 "catalytic activity" evidence=IEA
GO:0004105 "choline-phosphate cytidylyltransferase activity" evidence=ISS;IMP
GO:0005737 "cytoplasm" evidence=ISM
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2129705 CCT2 "phosphorylcholine cytidylyltransferase2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061220-4 pcyt1ba "phosphate cytidylyltransferase 1, choline, beta a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290229 DDB_G0290229 "cholinephosphate cytidylyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5K3 PCYT1B "Choline-phosphate cytidylyltransferase B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQZ5 PCYT1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFH6 PCYT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFX3 PCYT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPY1 LOC100152643 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GM95 LOC100152643 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.150.824
3rd Layer2.7.70.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
PLN02413294 PLN02413, PLN02413, choline-phosphate cytidylyltra 1e-157
cd02174150 cd02174, CCT, CTP:phosphocholine cytidylyltransfer 1e-96
PTZ00308353 PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl 2e-45
COG0615140 COG0615, TagD, Cytidylyltransferase [Cell envelope 2e-42
cd02173152 cd02173, ECT, CTP:phosphoethanolamine cytidylyltra 1e-36
PLN02406 418 PLN02406, PLN02406, ethanolamine-phosphate cytidyl 1e-32
PTZ00308353 PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl 3e-29
cd02170136 cd02170, cytidylyltransferase, cytidylyltransferas 6e-27
pfam01467148 pfam01467, CTP_transf_2, Cytidylyltransferase 1e-24
PLN02406418 PLN02406, PLN02406, ethanolamine-phosphate cytidyl 5e-23
TIGR0012566 TIGR00125, cyt_tran_rel, cytidyltransferase-like d 8e-20
cd02171129 cd02171, G3P_Cytidylyltransferase, glycerol-3-phos 7e-13
TIGR01518125 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c 7e-10
cd02172144 cd02172, RfaE_N, N-terminal domain of RfaE 5e-08
TIGR02199144 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, 7e-06
COG2870467 COG2870, RfaE, ADP-heptose synthase, bifunctional 3e-04
PRK11316473 PRK11316, PRK11316, bifunctional heptose 7-phospha 9e-04
>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase Back     alignment and domain information 
 Score =  440 bits (1133), Expect = e-157
 Identities = 183/209 (87%), Positives = 197/209 (94%)

Query: 2   SNANSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET 61
           + A S+ S +  ++PSDRPVRVYADGIYDLFHFGHARSLEQAKK FPNTYLLVGCCNDE 
Sbjct: 9   TAAASSGSATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEL 68

Query: 62  THKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS 121
           THK+KGKTVMTEDERYESLRHCKWVDEVIPDAPWV+TQEFLDKH+ID+VAHD+LPYADAS
Sbjct: 69  THKYKGKTVMTEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAHDALPYADAS 128

Query: 122 GAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYV 181
           GAGKDVYEFVK  GKFKETKRTDGISTSDIIMRIVKDYNQYVMRNL RGYSRKDLGVSYV
Sbjct: 129 GAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRKDLGVSYV 188

Query: 182 KEKRLRVNMKLKKLQEKVKQQQERVGEKV 210
           KEKRLRVNM LKKL+EKVK+QQE+VGEK+
Sbjct: 189 KEKRLRVNMGLKKLREKVKEQQEKVGEKI 217

Length = 294
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase Back     alignment and domain information
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase Back     alignment and domain information
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain Back     alignment and domain information
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE Back     alignment and domain information
>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II Back     alignment and domain information
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG2804348 consensus Phosphorylcholine transferase/cholinepho 100.0
PLN02413294 choline-phosphate cytidylyltransferase 100.0
cd02174150 CCT CTP:phosphocholine cytidylyltransferase. CTP:p 100.0
cd02173152 ECT CTP:phosphoethanolamine cytidylyltransferase ( 100.0
PLN02406418 ethanolamine-phosphate cytidylyltransferase 100.0
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 100.0
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 100.0
COG0615140 TagD Cytidylyltransferase [Cell envelope biogenesi 100.0
PLN02406 418 ethanolamine-phosphate cytidylyltransferase 100.0
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 99.98
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 99.96
cd02170136 cytidylyltransferase cytidylyltransferase. The cyt 99.94
cd02172144 RfaE_N N-terminal domain of RfaE. RfaE is a protei 99.94
TIGR02199144 rfaE_dom_II rfaE bifunctional protein, domain II. 99.93
TIGR01518125 g3p_cytidyltrns glycerol-3-phosphate cytidylyltran 99.92
cd02171129 G3P_Cytidylyltransferase glycerol-3-phosphate cyti 99.92
PRK11316473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.9
COG2870467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.89
PRK00777153 phosphopantetheine adenylyltransferase; Provisiona 99.82
PRK00168159 coaD phosphopantetheine adenylyltransferase; Provi 99.79
TIGR01527165 arch_NMN_Atrans nicotinamide-nucleotide adenylyltr 99.78
cd02039143 cytidylyltransferase_like Cytidylyltransferase-lik 99.72
cd02163153 PPAT Phosphopantetheine adenylyltransferase. Phosp 99.71
PF01467157 CTP_transf_2: Cytidylyltransferase; InterPro: IPR0 99.71
PRK01170322 phosphopantetheine adenylyltransferase/unknown dom 99.68
TIGR01510155 coaD_prev_kdtB pantetheine-phosphate adenylyltrans 99.67
cd02166163 NMNAT_Archaea Nicotinamide/nicotinate mononucleoti 99.66
cd02064180 FAD_synthetase_N FAD synthetase, N-terminal domain 99.66
PRK13964140 coaD phosphopantetheine adenylyltransferase; Provi 99.59
COG0669159 CoaD Phosphopantetheine adenylyltransferase [Coenz 99.58
TIGR0012566 cyt_tran_rel cytidyltransferase-related domain. Pr 99.58
PRK00071203 nadD nicotinic acid mononucleotide adenylyltransfe 99.56
PRK01153174 nicotinamide-nucleotide adenylyltransferase; Provi 99.55
PRK05627305 bifunctional riboflavin kinase/FMN adenylyltransfe 99.54
cd02165192 NMNAT Nicotinamide/nicotinate mononucleotide adeny 99.52
cd02168181 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide 99.5
PRK05379340 bifunctional nicotinamide mononucleotide adenylylt 99.5
TIGR00482193 nicotinate (nicotinamide) nucleotide adenylyltrans 99.49
cd02164143 PPAT_CoAS phosphopantetheine adenylyltransferase d 99.49
cd02167158 NMNAT_NadR Nicotinamide/nicotinate mononucleotide 99.49
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 99.48
PRK06973243 nicotinic acid mononucleotide adenylyltransferase; 99.46
COG1057197 NadD Nicotinic acid mononucleotide adenylyltransfe 99.46
PRK08887174 nicotinic acid mononucleotide adenylyltransferase; 99.43
PRK13793196 nicotinamide-nucleotide adenylyltransferase; Provi 99.35
COG1019158 Predicted nucleotidyltransferase [General function 99.33
PRK07143279 hypothetical protein; Provisional 99.33
PLN02388177 phosphopantetheine adenylyltransferase 99.33
PRK13671298 hypothetical protein; Provisional 99.27
PRK08099399 bifunctional DNA-binding transcriptional repressor 99.19
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 99.18
COG1056172 NadR Nicotinamide mononucleotide adenylyltransfera 99.17
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 99.17
cd02169297 Citrate_lyase_ligase Citrate lyase ligase. Citrate 99.13
cd09286225 NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti 99.13
smart00764182 Citrate_ly_lig Citrate lyase ligase C-terminal dom 99.11
TIGR00124332 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP 99.06
PLN02945236 nicotinamide-nucleotide adenylyltransferase/nicoti 99.04
PF05636 388 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr 98.89
TIGR00083288 ribF riboflavin kinase/FMN adenylyltransferase. mu 98.78
PRK13670 388 hypothetical protein; Provisional 98.65
COG0196304 RibF FAD synthase [Coenzyme metabolism] 98.59
PF06574157 FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof 98.52
KOG3351293 consensus Predicted nucleotidyltransferase [Genera 98.48
PF08218182 Citrate_ly_lig: Citrate lyase ligase C-terminal do 98.46
COG1323358 Predicted nucleotidyltransferase [General function 98.33
KOG3199234 consensus Nicotinamide mononucleotide adenylyl tra 97.72
COG3053352 CitC Citrate lyase synthetase [Energy production a 97.2
TIGR00018282 panC pantoate--beta-alanine ligase. This family is 96.66
PLN02660284 pantoate--beta-alanine ligase 96.45
PRK00380281 panC pantoate--beta-alanine ligase; Reviewed 96.3
cd00560277 PanC Pantoate-beta-alanine ligase. PanC Pantoate-b 95.93
TIGR00339383 sopT ATP sulphurylase. Members of this family also 94.89
PF02569280 Pantoate_ligase: Pantoate-beta-alanine ligase; Int 94.11
PRK13477 512 bifunctional pantoate ligase/cytidylate kinase; Pr 94.05
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 87.51
COG0414285 PanC Panthothenate synthetase [Coenzyme metabolism 85.55
TIGR02198 315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 81.27
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-69  Score=496.39  Aligned_cols=227  Identities=60%  Similarity=0.981  Sum_probs=204.9

Q ss_pred             CCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCC
Q 023877           15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP   94 (276)
Q Consensus        15 ~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p   94 (276)
                      .|..||+|||++|+||+||.||+++|+|||++|||.|||||||+|+.+|++||++||+++||+|.|+||||||+||+++|
T Consensus        58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~AP  137 (348)
T KOG2804|consen   58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAP  137 (348)
T ss_pred             CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCC
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcCCCcc
Q 023877           95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRK  174 (276)
Q Consensus        95 ~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg~~~~  174 (276)
                      |++|++||++|+||+|+|+++||...  ..+|+|+.+|+.|+|+.++||+||||||||.||+++|+.|++|||+||||++
T Consensus       138 W~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~k  215 (348)
T KOG2804|consen  138 WTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAK  215 (348)
T ss_pred             ccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHH
Confidence            99999999999999999999999853  5689999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCccccchhhHHhhhhhcCcceeEEEE
Q 023877          175 DLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLV  254 (276)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~f~gg~~~~~~~~~g~~~~~~~~  254 (276)
                      ||||||+++++|+++++|++|++++|.+++++++++..    ++..+.     +.|++|++    +|+..||.++.+...
T Consensus       216 eLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~~~~----l~~kW~-----e~s~e~i~----~fle~f~~~~~~n~~  282 (348)
T KOG2804|consen  216 ELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEFSRD----LIQKWE-----EKSREFIA----GFLELFGKGGALNAF  282 (348)
T ss_pred             hcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHH-----HhHHHHHH----HHHHHhccccchhhh
Confidence            99999999999999999999999999999999977322    333222     34566666    566666666654444


Q ss_pred             ee
Q 023877          255 LK  256 (276)
Q Consensus       255 ~~  256 (276)
                      +.
T Consensus       283 ~~  284 (348)
T KOG2804|consen  283 DD  284 (348)
T ss_pred             Hh
Confidence            44

>PLN02413 choline-phosphate cytidylyltransferase Back     alignment and domain information
>cd02174 CCT CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>cd02170 cytidylyltransferase cytidylyltransferase Back     alignment and domain information
>cd02172 RfaE_N N-terminal domain of RfaE Back     alignment and domain information
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II Back     alignment and domain information
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00777 phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase Back     alignment and domain information
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain Back     alignment and domain information
>cd02163 PPAT Phosphopantetheine adenylyltransferase Back     alignment and domain information
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT) Back     alignment and domain information
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial Back     alignment and domain information
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal Back     alignment and domain information
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme Back     alignment and domain information
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain Back     alignment and domain information
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed Back     alignment and domain information
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase Back     alignment and domain information
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain Back     alignment and domain information
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Back     alignment and domain information
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase Back     alignment and domain information
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes Back     alignment and domain information
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>COG1019 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PRK07143 hypothetical protein; Provisional Back     alignment and domain information
>PLN02388 phosphopantetheine adenylyltransferase Back     alignment and domain information
>PRK13671 hypothetical protein; Provisional Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>cd02169 Citrate_lyase_ligase Citrate lyase ligase Back     alignment and domain information
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic Back     alignment and domain information
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain Back     alignment and domain information
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase Back     alignment and domain information
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase Back     alignment and domain information
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function Back     alignment and domain information
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase Back     alignment and domain information
>PRK13670 hypothetical protein; Provisional Back     alignment and domain information
>COG0196 RibF FAD synthase [Coenzyme metabolism] Back     alignment and domain information
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2 Back     alignment and domain information
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6 Back     alignment and domain information
>COG1323 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion] Back     alignment and domain information
>TIGR00018 panC pantoate--beta-alanine ligase Back     alignment and domain information
>PLN02660 pantoate--beta-alanine ligase Back     alignment and domain information
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed Back     alignment and domain information
>cd00560 PanC Pantoate-beta-alanine ligase Back     alignment and domain information
>TIGR00339 sopT ATP sulphurylase Back     alignment and domain information
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis [] Back     alignment and domain information
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3hl4_A236 Crystal Structure Of A Mammalian Ctp:phosphocholine 8e-60
3elb_A341 Human Ctp: Phosphoethanolamine Cytidylyltransferase 6e-29
1coz_A129 Ctp:glycerol-3-Phosphate Cytidylyltransferase From 1e-08
2b7l_A132 Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid 3e-07
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236 Back     alignment and structure 
Iteration: 1

 Score =  226 bits (577), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 103/164 (62%), Positives = 131/164 (79%), Gaps = 2/164 (1%)
Query: 19  RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYE 78
           RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY+
Sbjct: 75  RPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYD 134
Query: 79  SLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFK 138
           +++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F 
Sbjct: 135 AVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFA 192
Query: 139 ETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVK 182
            T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ 
Sbjct: 193 PTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFIN 236
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341 Back     alignment and structure
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129 Back     alignment and structure
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 2e-82
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 5e-71
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 9e-68
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 4e-58
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 1e-57
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 5e-12
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 6e-07
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236 Back     alignment and structure
 Score =  246 bits (630), Expect = 2e-82
 Identities = 104/171 (60%), Positives = 134/171 (78%), Gaps = 2/171 (1%)

Query: 11  STDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTV 70
           +    P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TV
Sbjct: 67  ACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTV 126

Query: 71  MTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEF 130
           M E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY+ A     DVY+ 
Sbjct: 127 MNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAG--SDDVYKH 184

Query: 131 VKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYV 181
           +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++
Sbjct: 185 IKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFI 235
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129 Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132 Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143 Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 100.0
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 100.0
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 99.97
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 99.9
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 99.9
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 99.87
3nv7_A157 Phosphopantetheine adenylyltransferase; helicobact 99.83
4f3r_A162 Phosphopantetheine adenylyltransferase; phosphopan 99.82
3k9w_A187 Phosphopantetheine adenylyltransferase; niaid, ssg 99.79
3f3m_A168 Phosphopantetheine adenylyltransferase; PPAT, coen 99.78
3nbk_A177 Phosphopantetheine adenylyltransferase; PPAT, PHP; 99.78
3nd5_A171 Phosphopantetheine adenylyltransferase; PPAT, coen 99.77
1vlh_A173 Phosphopantetheine adenylyltransferase; TM0741, st 99.76
1qjc_A158 Phosphopantetheine adenylyltransferase; coenzyme A 99.75
1o6b_A169 Phosphopantetheine adenylyltransferase; structural 99.68
1od6_A160 PPAT, phosphopantetheine adenylyltransferase; coen 99.67
1kam_A194 Deamido-NAD(+), nicotinate-nucleotide adenylyltran 99.66
2qtr_A189 Nicotinate (nicotinamide) nucleotide adenylyltran; 99.66
3h05_A177 Uncharacterized protein VPA0413; nucleotidylyl, tr 99.64
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 99.63
1yum_A242 'probable nicotinate-nucleotide adenylyltransferas 99.62
1k4m_A213 NAMN adenylyltransferase; nucleotidyltransferase; 99.61
2h29_A189 Probable nicotinate-nucleotide adenylyltransferase 99.57
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 99.47
1mrz_A293 Riboflavin kinase/FMN adenylyltransferase; rossman 99.46
1f9a_A168 Hypothetical protein MJ0541; alpha/beta, transfera 99.46
1ej2_A181 Nicotinamide mononucleotide adenylyltransferase; d 99.44
1kqn_A279 Nmnat, nicotinamide mononucleotide adenylyl transf 99.39
2qjo_A341 Bifunctional NMN adenylyltransferase/nudix hydrol; 99.37
2x0k_A338 Riboflavin biosynthesis protein RIBF; riboflavin k 99.33
1nup_A252 FKSG76; NAD biosynthesis, mitochondria, pyridine a 99.31
2qjt_B352 Nicotinamide-nucleotide adenylyltransferase; two i 99.29
3op1_A308 Macrolide-efflux protein; structural genomics, PSI 99.23
3gmi_A357 UPF0348 protein MJ0951; protein with unknown funct 98.99
2ejc_A280 Pantoate--beta-alanine ligase; X-RAY diffraction, 98.5
1jhd_A396 Sulfate adenylyltransferase; sulfurylase, APS, che 97.99
1v8f_A276 Pantoate-beta-alanine ligase; rossmann fold, dimer 97.8
1v47_A349 ATP sulfurylase; product binding complex, zinc, ri 97.61
3ag6_A283 Pantothenate synthetase; ATP-dependent enzyme, ATP 96.71
3cov_A301 Pantothenate synthetase; pantothenate biosynthesis 96.41
1peh_A35 Pepnh1; transferase, nucleotidyltransferase, repea 96.07
3q12_A287 Pantoate--beta-alanine ligase; structural genomics 95.99
3inn_A314 Pantothenate synthetase; ssgcid, SBRI, UW, decode, 95.89
3uk2_A283 Pantothenate synthetase; AMP, structural genomics, 95.48
3mxt_A285 Pantothenate synthetase; alpha-beta-alpha, structu 94.48
3n8h_A264 Pantothenate synthetase; alpha-beta sandwich, liga 93.58
1r6x_A395 ATP:sulfate adenylyltransferase; APS kinase-like d 89.57
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 88.53
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=5e-46  Score=335.63  Aligned_cols=167  Identities=62%  Similarity=1.126  Sum_probs=137.2

Q ss_pred             CCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCC
Q 023877           14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDA   93 (276)
Q Consensus        14 ~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~   93 (276)
                      ..+..+|++||++|+|||||.||+++|++|+++|++|+|||||++|+++++.||+|++|.+||+++|++|+|||+|++++
T Consensus        70 ~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~  149 (236)
T 3hl4_A           70 GTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNA  149 (236)
T ss_dssp             CCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSC
T ss_pred             CCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECC
Confidence            34668999999999999999999999999999998899999999999988888889999999999999999999999999


Q ss_pred             CCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcCCCc
Q 023877           94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSR  173 (276)
Q Consensus        94 p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg~~~  173 (276)
                      ||.++.+|+++++||+|++|++++...  .++|.|+.+++.|++++++||+++|||+|++||+++|+.|++||++|||++
T Consensus       150 p~~l~~d~i~~~~~d~Vv~GDd~~~~~--~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~~~  227 (236)
T 3hl4_A          150 PWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTA  227 (236)
T ss_dssp             CSSCCHHHHHHTTCCEEEEESSCCCCS--SCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC------------
T ss_pred             cCcCcHHHHHHcCCCEEEECCccccCC--CchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCCCH
Confidence            999899999999999999999887653  456789999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhh
Q 023877          174 KDLGVSYVK  182 (276)
Q Consensus       174 ~~l~~~~~~  182 (276)
                      +||||||+|
T Consensus       228 ~~~~~~~~~  236 (236)
T 3hl4_A          228 KELNVSFIN  236 (236)
T ss_dssp             ---------
T ss_pred             HHhCCcccC
Confidence            999999986
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Back     alignment and structure
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Back     alignment and structure
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Back     alignment and structure
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0 Back     alignment and structure
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A* Back     alignment and structure
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A* Back     alignment and structure
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Back     alignment and structure
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Back     alignment and structure
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Back     alignment and structure
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Back     alignment and structure
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Back     alignment and structure
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Back     alignment and structure
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus} Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Back     alignment and structure
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Back     alignment and structure
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Back     alignment and structure
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Back     alignment and structure
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Back     alignment and structure
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Back     alignment and structure
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Back     alignment and structure
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Back     alignment and structure
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Back     alignment and structure
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Back     alignment and structure
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Back     alignment and structure
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Back     alignment and structure
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima} Back     alignment and structure
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A Back     alignment and structure
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Back     alignment and structure
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Back     alignment and structure
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1 Back     alignment and structure
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A* Back     alignment and structure
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis} Back     alignment and structure
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0 Back     alignment and structure
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A* Back     alignment and structure
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A* Back     alignment and structure
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1coza_126 c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr 8e-24
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 91.5 bits (226), Expect = 8e-24
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 22  RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR 81
           +V   G +DL H+GH + LE+AK+     YL+V    DE   + + K   + + R   L 
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQ--LGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILE 60

Query: 82  HCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK 141
             ++VDEVIP+  W   ++ +  H ID                +  ++F+K   +     
Sbjct: 61  TIRYVDEVIPEKNWEQKKQDIIDHNIDVFVM--------GDDWEGKFDFLKDQCEVVYLP 112

Query: 142 RTDGISTSDIIMRI 155
           RT+GIST+ I   I
Sbjct: 113 RTEGISTTKIKEEI 126

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1coza_126 CTP:glycerol-3-phosphate cytidylyltransferase {Bac 100.0
d1f9aa_164 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.64
d1ej2a_167 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.52
d1lw7a1163 Transcriptional regulator NadR, NMN-adenylyltransf 99.5
d1o6ba_163 Phosphopantetheine adenylyltransferase {Bacillus s 99.43
d1qjca_157 Phosphopantetheine adenylyltransferase {Escherichi 99.41
d1tfua_157 Phosphopantetheine adenylyltransferase {Mycobacter 99.36
d1od6a_160 Phosphopantetheine adenylyltransferase {Thermus th 99.34
d1k4ma_213 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.34
d1kr2a_271 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.31
d1nuua_233 Cytosolic NMN/NAMN adenylyltransferase {Human (Hom 99.3
d1vlha_157 Phosphopantetheine adenylyltransferase {Thermotoga 99.27
d1kama_189 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.17
d1mrza2157 FMN adenylyltransferase domain of bifunctional FAD 99.03
d1jhda2223 ATP sulfurylase catalytic domain {Sulfur-oxidizing 98.94
d1v8fa_276 Pantothenate synthetase (Pantoate-beta-alanine lig 94.87
d2a84a1286 Pantothenate synthetase (Pantoate-beta-alanine lig 93.96
d1ihoa_282 Pantothenate synthetase (Pantoate-beta-alanine lig 93.5
d1rkda_ 306 Ribokinase {Escherichia coli [TaxId: 562]} 86.21
d2fv7a1 308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 84.46
d1vm7a_ 299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 82.9
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.4e-34  Score=234.69  Aligned_cols=126  Identities=31%  Similarity=0.440  Sum_probs=114.8

Q ss_pred             CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcchH
Q 023877           20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ   99 (276)
Q Consensus        20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t~   99 (276)
                      |++|++.|+||+||.||+++|++|+++|  |+|||||++|+.+.+.|++|++|++||+++|++|+|||+|++..||..+.
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~g--d~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~   78 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKK   78 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhC--ceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccH
Confidence            7899999999999999999999999995  89999999999988888889999999999999999999999999998888


Q ss_pred             HHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHH
Q 023877          100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRI  155 (276)
Q Consensus       100 e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI  155 (276)
                      +++.+++||++++|+|+- +       .++.++..|+++++||++++|||.|++||
T Consensus        79 ~~i~~~~~d~~v~G~D~~-~-------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          79 QDIIDHNIDVFVMGDDWE-G-------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             HHHHHTTCSEEEEEGGGT-T-------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             hhhhccCCCEeeeccccc-c-------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            999999999999998532 1       23456677899999999999999999985
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Back     information, alignment and structure
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]} Back     information, alignment and structure
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure