Citrus Sinensis ID: 023880

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQANNHTTFPIEALVPINPESGGSKVKQHLID
ccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHccccccccccHHEEEcccHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
MQYAGSIVSFICVvyrpqavmatgqVLFHRfyckrsfarFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMecrreglpiehLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARrfqiplpenppwwkafdaeKSGIDEVCRVLAHLyslpkakyipvckdgtsftfssktvdsqpqstpkevlqsspqannhttfpiealvpinpesggskvkqhlid
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWlaskleesprkarQVIIVFHRmecrreglpiehlDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARrfqiplpenppWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQANNHTTFPIEALvpinpesggskvkqhlid
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQANNHTTFPIEALVPINPESGGSKVKQHLID
***AGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTF****************************************************
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLP********************************************************************
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTF*********************QANNHTTFPIEALVPINPESG**********
MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKA******************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQANNHTTFPIEALVPINPESGGSKVKQHLID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q8RWV3 416 Cyclin-L1-1 OS=Arabidopsi yes no 0.836 0.555 0.839 1e-117
Q9AS36 427 Cyclin-L1-1 OS=Oryza sati yes no 0.822 0.531 0.732 2e-99
Q5BKF8 497 Cyclin-L2 OS=Xenopus trop yes no 0.699 0.388 0.454 6e-42
Q7ZVX0 498 Cyclin-L1 OS=Danio rerio no no 0.721 0.399 0.436 5e-41
Q5I0H5 520 Cyclin-L2 OS=Rattus norve yes no 0.684 0.363 0.449 6e-41
Q9JJA7 518 Cyclin-L2 OS=Mus musculus yes no 0.684 0.364 0.449 6e-41
Q96S94 520 Cyclin-L2 OS=Homo sapiens yes no 0.721 0.382 0.425 9e-41
Q5ZJP9 534 Cyclin-L1 OS=Gallus gallu no no 0.684 0.353 0.439 1e-40
Q6GN15 496 Cyclin-L1 OS=Xenopus laev N/A no 0.731 0.407 0.410 2e-39
Q52KE7 532 Cyclin-L1 OS=Mus musculus no no 0.731 0.379 0.423 1e-38
>sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/231 (83%), Positives = 215/231 (93%)

Query: 17  PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECR 76
           PQAVMATGQVLF RFYCK+S A+FDVKIVAAS VWLASKLEE+P+KARQVIIVFHRMECR
Sbjct: 52  PQAVMATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECR 111

Query: 77  REGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLEL 136
           RE LP+EHLD+++KKFSELK+E+SRTERHILKEMGFVCHVEHPHKFISNYLATLETP EL
Sbjct: 112 RENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPEL 171

Query: 137 RQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDE 196
           RQEAWNLANDSLRTTLCVRF+SEVVACGVVYAAARRFQ+PLPENPPWWKAFDA+KS IDE
Sbjct: 172 RQEAWNLANDSLRTTLCVRFRSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDE 231

Query: 197 VCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQA 247
           VCRVLAHLYSLPKA+YI VCKDG  FTFSS++ +SQ QS  K++L  + +A
Sbjct: 232 VCRVLAHLYSLPKAQYISVCKDGKPFTFSSRSGNSQGQSATKDLLPGAGEA 282

Arabidopsis thaliana (taxid: 3702)
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZVX0|CCNL1_DANRE Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 Back     alignment and function description
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2 Back     alignment and function description
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 Back     alignment and function description
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 Back     alignment and function description
>sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
356535127 448 PREDICTED: cyclin-L1-1-like [Glycine max 0.963 0.593 0.783 1e-121
302143552 455 unnamed protein product [Vitis vinifera] 0.985 0.597 0.775 1e-121
363806710 445 uncharacterized protein LOC100820383 [Gl 0.963 0.597 0.772 1e-119
359485199 451 PREDICTED: cyclin-L1-1 [Vitis vinifera] 0.974 0.596 0.771 1e-119
224100837 421 predicted protein [Populus trichocarpa] 0.913 0.598 0.811 1e-116
449435667 443 PREDICTED: cyclin-L1-1-like [Cucumis sat 0.949 0.591 0.769 1e-116
297825815 415 ania-6a type cyclin [Arabidopsis lyrata 0.927 0.616 0.770 1e-116
357481581 448 Cyclin-L1-1 [Medicago truncatula] gi|355 0.978 0.602 0.740 1e-115
13924511 416 ania-6a type cyclin [Arabidopsis thalian 0.836 0.555 0.839 1e-115
357481585 438 Cyclin-L1-1 [Medicago truncatula] gi|355 0.978 0.616 0.740 1e-115
>gi|356535127|ref|XP_003536100.1| PREDICTED: cyclin-L1-1-like [Glycine max] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/268 (78%), Positives = 233/268 (86%), Gaps = 2/268 (0%)

Query: 3   YAGSIVSFICVVYR-PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPR 61
           Y   ++    ++ R PQAVMATGQVLFHRFYCK+SFARF+VK VAAS VWLASKLEE+PR
Sbjct: 37  YGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNVKKVAASCVWLASKLEENPR 96

Query: 62  KARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHK 121
           KARQVIIVFHRMECRRE  P+EHLDL+SKK+ +LKME+SRTERHILKEMGF+CHVEHPHK
Sbjct: 97  KARQVIIVFHRMECRREDFPMEHLDLYSKKYVDLKMELSRTERHILKEMGFICHVEHPHK 156

Query: 122 FISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENP 181
           FISNYLATLETP ELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQ+PLPENP
Sbjct: 157 FISNYLATLETPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENP 216

Query: 182 PWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVL 241
           PWWKAFD EKSGIDEVCRVLAHLYSLPKA+YIPVCKDG  FTFS+K+ +S+ QSTPK+V 
Sbjct: 217 PWWKAFDGEKSGIDEVCRVLAHLYSLPKAQYIPVCKDG-DFTFSNKSSESKSQSTPKDVP 275

Query: 242 QSSPQANNHTTFPIEALVPINPESGGSK 269
           Q+SP A+   + P       N ES GSK
Sbjct: 276 QNSPPADTDNSVPKGTQGEANIESNGSK 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143552|emb|CBI22113.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363806710|ref|NP_001242524.1| uncharacterized protein LOC100820383 [Glycine max] gi|255640064|gb|ACU20323.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359485199|ref|XP_002279618.2| PREDICTED: cyclin-L1-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100837|ref|XP_002312033.1| predicted protein [Populus trichocarpa] gi|222851853|gb|EEE89400.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435667|ref|XP_004135616.1| PREDICTED: cyclin-L1-1-like [Cucumis sativus] gi|449485709|ref|XP_004157252.1| PREDICTED: cyclin-L1-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297825815|ref|XP_002880790.1| ania-6a type cyclin [Arabidopsis lyrata subsp. lyrata] gi|297326629|gb|EFH57049.1| ania-6a type cyclin [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357481581|ref|XP_003611076.1| Cyclin-L1-1 [Medicago truncatula] gi|355512411|gb|AES94034.1| Cyclin-L1-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|13924511|gb|AAK49036.1|AF249734_1 ania-6a type cyclin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357481585|ref|XP_003611078.1| Cyclin-L1-1 [Medicago truncatula] gi|355512413|gb|AES94036.1| Cyclin-L1-1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2066185 416 RCY1 "arginine-rich cyclin 1" 0.836 0.555 0.839 1.7e-105
DICTYBASE|DDB_G0285553273 cycL "cyclin" [Dictyostelium d 0.721 0.728 0.42 1.1e-41
FB|FBgn0040394 560 CG16903 [Drosophila melanogast 0.884 0.435 0.378 4.6e-41
UNIPROTKB|E1BJ67 526 CCNL1 "Uncharacterized protein 0.702 0.368 0.452 2e-40
UNIPROTKB|C9JPL0428 CCNL1 "Cyclin-L1" [Homo sapien 0.702 0.453 0.452 2e-40
UNIPROTKB|Q9UK58 526 CCNL1 "Cyclin-L1" [Homo sapien 0.702 0.368 0.452 2e-40
UNIPROTKB|I3LG02 526 CCNL1 "Uncharacterized protein 0.702 0.368 0.452 2e-40
MGI|MGI:1922664 532 Ccnl1 "cyclin L1" [Mus musculu 0.702 0.364 0.452 2e-40
RGD|620864 527 Ccnl1 "cyclin L1" [Rattus norv 0.702 0.368 0.452 2e-40
UNIPROTKB|Q9R1Q2 527 Ccnl1 "Cyclin-L1" [Rattus norv 0.702 0.368 0.452 2e-40
TAIR|locus:2066185 RCY1 "arginine-rich cyclin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 194/231 (83%), Positives = 215/231 (93%)

Query:    17 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECR 76
             PQAVMATGQVLF RFYCK+S A+FDVKIVAAS VWLASKLEE+P+KARQVIIVFHRMECR
Sbjct:    52 PQAVMATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECR 111

Query:    77 REGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLEL 136
             RE LP+EHLD+++KKFSELK+E+SRTERHILKEMGFVCHVEHPHKFISNYLATLETP EL
Sbjct:   112 RENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPEL 171

Query:   137 RQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDE 196
             RQEAWNLANDSLRTTLCVRF+SEVVACGVVYAAARRFQ+PLPENPPWWKAFDA+KS IDE
Sbjct:   172 RQEAWNLANDSLRTTLCVRFRSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDE 231

Query:   197 VCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSSPQA 247
             VCRVLAHLYSLPKA+YI VCKDG  FTFSS++ +SQ QS  K++L  + +A
Sbjct:   232 VCRVLAHLYSLPKAQYISVCKDGKPFTFSSRSGNSQGQSATKDLLPGAGEA 282
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS
GO:0006396 "RNA processing" evidence=IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009651 "response to salt stress" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
DICTYBASE|DDB_G0285553 cycL "cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0040394 CG16903 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJ67 CCNL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C9JPL0 CCNL1 "Cyclin-L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UK58 CCNL1 "Cyclin-L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG02 CCNL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1922664 Ccnl1 "cyclin L1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620864 Ccnl1 "cyclin L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9R1Q2 Ccnl1 "Cyclin-L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9AS36CCL11_ORYSJNo assigned EC number0.73240.82240.5316yesno
Q8RWV3CCL11_ARATHNo assigned EC number0.83980.83690.5552yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 4e-19
cd0004388 cd00043, CYCLIN, Cyclin box fold 7e-09
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 7e-06
COG1405285 COG1405, SUA7, Transcription initiation factor TFI 1e-05
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-05
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 3e-05
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-04
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 84.4 bits (209), Expect = 4e-19
 Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 31/248 (12%)

Query: 8   VSFICVVYR-PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQV 66
           +  +C     PQ V+AT  + F RFY K S     +  V  + V+LA K+E++PR     
Sbjct: 52  IMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRDIS-- 109

Query: 67  IIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNY 126
           I  F            E  DL+S++    +  +   E  +L+ + F  HV HP+K++  +
Sbjct: 110 IESF------------EARDLWSEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGF 157

Query: 127 LATLET--PLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWW 184
           L  L+     +L Q AW + ND+LRT LC+ +   ++A   +  A     +P+ +     
Sbjct: 158 LKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIALAALLIACEVLGMPIIKL--LD 215

Query: 185 KAFDAEKSGIDEVCRVLAHLYSLPKAKYIPVCKDGTSFTFSSKTVDSQPQSTPKEVLQSS 244
                 K  +       A  Y       I       +F     + D           Q +
Sbjct: 216 FVSYETKEEVI------ALNYKSIVKNKI------KTFKAEHLSRDLPFTLQNIAEPQFA 263

Query: 245 PQANNHTT 252
                 + 
Sbjct: 264 LDKKPKSE 271

Length = 297
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG0835367 consensus Cyclin L [General function prediction on 100.0
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 100.0
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.92
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.87
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.85
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.84
KOG0653391 consensus Cyclin B and related kinase-activating p 99.83
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.73
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.72
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.71
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.67
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.59
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.47
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.37
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.36
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.9
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.84
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.72
KOG1598 521 consensus Transcription initiation factor TFIIIB, 98.51
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.33
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.18
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.17
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.12
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 97.15
KOG1597308 consensus Transcription initiation factor TFIIB [T 96.77
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.93
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 95.08
TIGR00569305 ccl1 cyclin ccl1. University). 93.95
KOG1674218 consensus Cyclin [General function prediction only 92.56
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 91.55
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 89.08
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 88.74
KOG1598521 consensus Transcription initiation factor TFIIIB, 88.31
KOG0835367 consensus Cyclin L [General function prediction on 88.06
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 87.54
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 87.04
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 86.67
KOG1675343 consensus Predicted cyclin [General function predi 80.87
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 80.52
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-51  Score=361.52  Aligned_cols=238  Identities=46%  Similarity=0.734  Sum_probs=221.8

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCCc
Q 023880            3 YAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPI   82 (276)
Q Consensus         3 ~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p~   82 (276)
                      +|+||++.|.+|+||+.+++|++++|+|||..+++..+|...+++||++||+|+||.|++++||++|++++.++.+..+.
T Consensus        26 G~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~  105 (367)
T KOG0835|consen   26 GCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAA  105 (367)
T ss_pred             hHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH--HHHHHHHHHHHhhhcccccccCChHH
Q 023880           83 EHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL--ELRQEAWNLANDSLRTTLCVRFKSEV  160 (276)
Q Consensus        83 ~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~--~l~~~A~~~l~ds~~t~l~l~~~P~~  160 (276)
                      ++. .....|..++..++.+|+.||++|||+++|.|||+++..|++.|++++  +|.|.+|+|+||+++|++|++|+|+.
T Consensus       106 ~~~-~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~  184 (367)
T KOG0835|consen  106 EHL-ILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPES  184 (367)
T ss_pred             chh-hhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHH
Confidence            665 556778889999999999999999999999999999999999999864  57999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC--CCCccccccCCCCcccccCCCCCCCCCCCCc
Q 023880          161 VACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL--PKAKYIPVCKDGTSFTFSSKTVDSQPQSTPK  238 (276)
Q Consensus       161 IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (276)
                      |||||||+|++.++++||..++||..|++++++|+++|..++.+|..  ++..++..+.+...+.++..+...+.+..++
T Consensus       185 iACaciyLaAR~~eIpLp~~P~Wf~~Fd~~k~eid~ic~~l~~lY~~~~p~~~li~~~vd~~k~~~~da~~k~~~~~ds~  264 (367)
T KOG0835|consen  185 IACACIYLAARNLEIPLPFQPHWFKAFDTTKREIDEICYRLIPLYKRAKPDETLIEAFVDRLKRKFSDASGKAKGANDSA  264 (367)
T ss_pred             HHHHHHHHHHhhhcCCCCCCccHHHHcCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhHHHHhccCCccchhhHH
Confidence            99999999999999999999999999999999999999999999998  7778888888888888888777777776655


Q ss_pred             cCC
Q 023880          239 EVL  241 (276)
Q Consensus       239 ~~~  241 (276)
                      +..
T Consensus       265 ~~l  267 (367)
T KOG0835|consen  265 SLL  267 (367)
T ss_pred             Hhh
Confidence            544

>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2i53_A258 Crystal Structure Of Cyclin K Length = 258 2e-20
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 6e-17
2w2h_A264 Structural Basis Of Transcription Activation By The 2e-16
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 2e-16
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 5e-16
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 6e-16
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 8e-16
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 9e-10
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 1e-04
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 21/204 (10%)
Query: 20  VMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREG 79
            +ATG + FHRFY   SF +F   +  A  ++LA K+EE+P+K + +I      +  R  
Sbjct: 61  TLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII------KTARSL 114
Query: 80  LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP----LE 135
           L       F     + K E+   ER +L+ + F   VEHP++F+  Y   L+       +
Sbjct: 115 LNDVQFGQFG---DDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQK 171
Query: 136 LRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAAR--RFQIPLPENPP----WWKAF-- 187
           L Q AW   NDSL TTL ++++ E++A  V+Y A R  +F+I    + P    WW+ F  
Sbjct: 172 LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ 231
Query: 188 DAEKSGIDEVCRVLAHLYSLPKAK 211
           D     ++++C  +  LYS  K +
Sbjct: 232 DVPVDVLEDICHQILDLYSQGKQQ 255
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 8e-53
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-51
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 6e-50
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-49
2ivx_A257 Cyclin-T2; transcription regulation, cell division 4e-49
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 4e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1c9b_A207 General transcription factor IIB; protein-DNA comp 5e-06
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 5e-06
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 9e-06
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-05
1ais_B200 TFB TFIIB, protein (transcription initiation facto 1e-04
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-04
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 9e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  171 bits (435), Expect = 8e-53
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 21/207 (10%)

Query: 17  PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECR 76
               +ATG + FHRFY   SF +F   +  A  ++LA K+EE+P+K + +I     +   
Sbjct: 58  HYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLND 117

Query: 77  REGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE- 135
            +         F +   + K E+   ER +L+ + F   VEHP++F+  Y   L+     
Sbjct: 118 VQ---------FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNK 168

Query: 136 ---LRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPE------NPPWWKA 186
              L Q AW   NDSL TTL ++++ E++A  V+Y A R  +  + E         WW+ 
Sbjct: 169 IQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ 228

Query: 187 F--DAEKSGIDEVCRVLAHLYSLPKAK 211
           F  D     ++++C  +  LYS  K +
Sbjct: 229 FVQDVPVDVLEDICHQILDLYSQGKQQ 255
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.97
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.97
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.97
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.94
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.86
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.32
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.85
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 96.72
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 96.44
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 96.17
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 95.69
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 95.19
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 94.98
2ivx_A257 Cyclin-T2; transcription regulation, cell division 94.57
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 94.38
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 94.37
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 94.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 93.88
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 93.87
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 93.66
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 93.48
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 93.42
3m03_A95 ORC6, origin recognition complex subunit 6; helix 92.75
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 91.25
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 90.0
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 84.33
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 83.4
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 81.47
3m03_A95 ORC6, origin recognition complex subunit 6; helix 80.83
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=1.6e-42  Score=307.11  Aligned_cols=205  Identities=27%  Similarity=0.438  Sum_probs=188.4

Q ss_pred             chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880            2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP   81 (276)
Q Consensus         2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p   81 (276)
                      ++++||.++|.+|+|++.|+++|++||||||.++++.++++++||+||||||||+||.|++++|++.+++.+.++..   
T Consensus        33 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~---  109 (257)
T 2ivx_A           33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLE---  109 (257)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTS---
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCC---
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988765432   


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhc-ccccccCChHH
Q 023880           82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR-TTLCVRFKSEV  160 (276)
Q Consensus        82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~-t~l~l~~~P~~  160 (276)
                       .+++..++.|...+++|++||+.||++|||++.++||+.||.+|++.++.++++.+.||++++++++ +++|+.|+|+.
T Consensus       110 -~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~  188 (257)
T 2ivx_A          110 -PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTV  188 (257)
T ss_dssp             -CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHH
T ss_pred             -CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHH
Confidence             1235567889988999999999999999999999999999999999999999999999999999995 88999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC---Cccccccc--cCCHHHHHHHHHHHHHhhcCCCC
Q 023880          161 VACGVVYAAARRFQIPLPE---NPPWWKAF--DAEKSGIDEVCRVLAHLYSLPKA  210 (276)
Q Consensus       161 IAaAaI~lA~~~~~~~lp~---~~~W~~~~--~~~~~~v~~i~~~ll~ly~~~k~  210 (276)
                      ||+||||+|++.+|.++|.   +++||..|  ++++++|++++.+|+++|.+...
T Consensus       189 IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~~~  243 (257)
T 2ivx_A          189 IACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPN  243 (257)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhChH
Confidence            9999999999999988764   45799988  57999999999999999987544
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Back     alignment and structure
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 4e-27
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 9e-27
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 3e-18
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-17
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-16
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-14
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 0.003
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (248), Expect = 4e-27
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 117 EHPHKFISNYLATLETPLELRQEAWNLANDSLR-TTLCVRFKSEVVACGVVYAAARRFQI 175
           EHPH  +      +    +L Q ++ +A +SL  TT C+++K  V+AC  ++ A +    
Sbjct: 1   EHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNW 60

Query: 176 PLPENP---PWWKAFDAE--KSGIDEVCRVLAHLYSLPKAK 211
            +P +     WW+  D       +DE+      +      +
Sbjct: 61  EIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPNR 101
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.92
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.88
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.87
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.7
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.69
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.69
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.67
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.66
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.36
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.15
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.13
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 99.04
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.97
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.76
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.68
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.62
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.49
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.43
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.95
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.12
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 95.86
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 95.43
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 94.93
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 94.43
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 94.18
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 93.99
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 93.7
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 93.47
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 91.49
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 88.91
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-26  Score=183.95  Aligned_cols=111  Identities=30%  Similarity=0.407  Sum_probs=101.9

Q ss_pred             chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880            2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP   81 (276)
Q Consensus         2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p   81 (276)
                      ++|+||.++|.+|+||+.|+++|++||||||.++++.++++++|++||||||||+||+++++++++++++.+.++..   
T Consensus        33 ~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl~LA~K~eE~~~~~~~ii~~~~~~~~~~~---  109 (143)
T d2ivxa1          33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLE---  109 (143)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTS---
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccc---
Confidence            58999999999999999999999999999999999999999999999999999999999999999999988775533   


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHhCccccc
Q 023880           82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHV  116 (276)
Q Consensus        82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v  116 (276)
                       ...+..++.|+.++++|+.+|+.||++||||++|
T Consensus       110 -~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1         110 -PLLDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             -CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             -hhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence             2234567889999999999999999999999975
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure