Citrus Sinensis ID: 023901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNETSVW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccHHHccccccEEccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHcccHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
maslatssfsslqflprpkipqppfsspslllrqrrtTYQFSSLVVSAqndkkstttKEVKKKAEEVEVEVEEELPWIQEKALDLVEFtgsvtqaipgprvgqsklpwilaVPLAYVGVSFVIAFVKTVkkfnspkfkrkklvnkNAMVCKTIDELFqkggdavnppalkglvqktgfSMEDVLRKYIRYALnekpfnpdLVVNLIQLRKASMLDDSQVAEILNEISRRFvrekgpvvmnmsgysekgFKRKLAVQALFGKVFYLSEvnnetsvw
Flexible Loop (DISEMBL)
maslatssfsslqflprpkiPQPPFSSPSLLLRQRRTTYQFSslvvsaqndkkstttkevkkkaeeveveveeelpwiQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTvkkfnspkfkrkklvnknaMVCKTIDELfqkggdavnppALKGLVQKTGFSMEDVLRKYIRYAlnekpfnpDLVVNLIQLRKASMLDDSQVAEILNEIsrrfvrekgpvVMNMSGYSEKGFKRKLAVQALFGKVfylsevnnetsvw
Low Complexity Region (SEG)
MASLATSSFSSLQFLPRPKIpqppfsspslllrqrrTTYQFSSLVVSAQNDKKSTTTkevkkkaeeveveveeeLPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVkkfnspkfkrkkLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNETSVW
Disordered region (IsUnstruct)
************************************************************************EELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEV*******
Disordered Region (DISOPRED)
*********SSLQFLPRPKIPQPPFSSPSLLL*******************************************PWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTV*****************AMVCKTIDELFQKGGD*******KGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNE****
Disordered Region (DISEMBL)
**********SLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLV****************************ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNETSVW
Disordered Region (DISPRO)
**S****SFSSLQFLPRPKIP*PPFSSPSLL**************************************EVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNETSVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
449458726	340	PREDICTED: uncharacterized protein LOC10	0.901	0.729	0.634	4e-87
225463793	345	PREDICTED: uncharacterized protein LOC10	0.705	0.562	0.788	5e-87
356577710	348	PREDICTED: uncharacterized protein LOC10	0.705	0.557	0.768	1e-85
357439057	422	hypothetical protein MTR_1g039490 [Medic	0.701	0.457	0.772	1e-84
21592521	346	unknown [Arabidopsis thaliana]	0.901	0.716	0.644	1e-84
297806925	346	hypothetical protein ARALYDRAFT_487695 [	0.894	0.710	0.654	4e-84
18415850	346	uncharacterized protein [Arabidopsis tha	0.887	0.705	0.653	4e-84
9759348	471	unnamed protein product [Arabidopsis tha	0.705	0.411	0.758	1e-83
147766314	371	hypothetical protein VITISV_030897 [Viti	0.705	0.522	0.711	5e-83
363807650	349	uncharacterized protein LOC100809862 [Gl	0.705	0.555	0.726	2e-82

>gi|449458726|ref|XP_004147098.1| PREDICTED: uncharacterized protein LOC101212890 [Cucumis sativus] gi|449526688|ref|XP_004170345.1| PREDICTED: uncharacterized protein LOC101227242 [Cucumis sativus]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/271 (63%), Positives = 205/271 (75%), Gaps = 23/271 (8%)

Query: 13  QFLPRP-----KIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEV 67
           Q L RP     K P   FS  +L  R        S+L+++A   K S +   V K+++  
Sbjct: 16  QLLHRPNSLFSKFPSSTFSPFTLSNR--------STLLLAAAKKKDSDSVPAVAKESKTS 67

Query: 68  EVEV----------EEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYV 117
           +             EEELPW QEKALDLVEF+GSVTQAIPGPRVGQS LPWILAVPLAY+
Sbjct: 68  KSNTVGDEEEFVEVEEELPWYQEKALDLVEFSGSVTQAIPGPRVGQSSLPWILAVPLAYL 127

Query: 118 GVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTG 177
           GV+FVIAFVKTV+KFNSPK KR++ V KNA +C ++DEL +KG D V P AL  +VQKTG
Sbjct: 128 GVTFVIAFVKTVRKFNSPKEKRRRQVTKNAFLCISVDELLEKGRDEVKPEALAEIVQKTG 187

Query: 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPV 237
           FS++ +LRKYIRYALNEKPFNP+LV NLIQLRKAS L+D+QVA+ILNE+SRR  R+KGPV
Sbjct: 188 FSVDQILRKYIRYALNEKPFNPELVANLIQLRKASALEDTQVAQILNEVSRRIERDKGPV 247

Query: 238 VMNMSGYSEKGFKRKLAVQALFGKVFYLSEV 268
           VMNMSGY+EKGFKRKLAVQALFGK+FYLSE+
Sbjct: 248 VMNMSGYTEKGFKRKLAVQALFGKIFYLSEL 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463793|ref|XP_002268157.1| PREDICTED: uncharacterized protein LOC100250766 [Vitis vinifera] gi|297742717|emb|CBI35351.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 174/194 (89%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWI+EKALDLVEF+GSV QAIPGPRVG+S  PWILA+PLAY G++FVIAFV+TV+KFNS
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITFVIAFVRTVQKFNS 147

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR+KLVNKNAM+CK+IDE+F  G D     AL GL+QKTGFS E++ RKYIRYALNE
Sbjct: 148 PKQKRRKLVNKNAMLCKSIDEVFLNGRDEELQSALNGLMQKTGFSREEIFRKYIRYALNE 207

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNP++V  LIQ RKAS+LDDSQVAEILNEISRR VR+KGPVVM+MSGYSEKGFKRKLA
Sbjct: 208 KPFNPEMVATLIQFRKASLLDDSQVAEILNEISRRIVRDKGPVVMDMSGYSEKGFKRKLA 267

Query: 255 VQALFGKVFYLSEV 268
           VQALFGKVFYLSE+
Sbjct: 268 VQALFGKVFYLSEL 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577710|ref|XP_003556967.1| PREDICTED: uncharacterized protein LOC100804019 [Glycine max]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 175/194 (90%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + LPWILA+PL Y G++FVIAFVKTV+KF+S
Sbjct: 95  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAIPLTYAGLTFVIAFVKTVRKFSS 154

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR++ V+KNA +CK++D+LFQKG D V   ALK +  KTGF +E++LRKYIRYALNE
Sbjct: 155 PKAKRRRQVSKNATLCKSLDDLFQKGRDEVKLDALKQIENKTGFDLEEILRKYIRYALNE 214

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+V +LIQLRKASML+DSQVAEILNEISRR VR+KGP+VM+ SGY+EKGFKRK+A
Sbjct: 215 KPFNPDMVADLIQLRKASMLNDSQVAEILNEISRRIVRDKGPIVMDKSGYTEKGFKRKIA 274

Query: 255 VQALFGKVFYLSEV 268
           VQALFGKVFYLSE+
Sbjct: 275 VQALFGKVFYLSEL 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439057|ref|XP_003589805.1| hypothetical protein MTR_1g039490 [Medicago truncatula] gi|355478853|gb|AES60056.1| hypothetical protein MTR_1g039490 [Medicago truncatula]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 170/193 (88%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + LPWILAVPL Y+G++FVIAFVKTVKKF S
Sbjct: 77  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAVPLGYLGLTFVIAFVKTVKKFTS 136

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK +R+KLV KNAM+CK++DEL Q+G D +    LK +  KTGF +E++LRKYIRYALNE
Sbjct: 137 PKAQRRKLVGKNAMLCKSVDELLQRGRDEIKVDDLKAIENKTGFGLEEILRKYIRYALNE 196

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+V +LIQLR+AS L DSQ AEILNEISRR VR+KGP+VMN SGY+EKGFKRKLA
Sbjct: 197 KPFNPDVVADLIQLRRASSLSDSQAAEILNEISRRIVRDKGPIVMNKSGYTEKGFKRKLA 256

Query: 255 VQALFGKVFYLSE 267
           VQALFGKVFYLSE
Sbjct: 257 VQALFGKVFYLSE 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592521|gb|AAM64471.1| unknown [Arabidopsis thaliana]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/253 (64%), Positives = 198/253 (78%), Gaps = 5/253 (1%)

Query: 20  IPQPPFSSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE---EL 75
           +P+ P  +P   LRQ R  +   S+     Q++  +  T   KK +   E   EE   ++
Sbjct: 25  LPRTPLFAPLPSLRQLRPKHISISAAAPKKQSETVTAPTPAAKKNSSVEEETEEEVEEDM 84

Query: 76  PWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSP 135
           PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+SP
Sbjct: 85  PWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSSP 144

Query: 136 KFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK 195
           K +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNEK
Sbjct: 145 KAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALNEK 203

Query: 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAV 255
           PFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKLAV
Sbjct: 204 PFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLAV 263

Query: 256 QALFGKVFYLSEV 268
           QALFGK++YLSE+
Sbjct: 264 QALFGKIYYLSEL 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806925|ref|XP_002871346.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata] gi|297317183|gb|EFH47605.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/255 (65%), Positives = 199/255 (78%), Gaps = 9/255 (3%)

Query: 20  IPQPPF--SSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE--- 73
           +P+ P   S PSL  RQ R  +   S+     Q+D  +T T   KK +   E   EE   
Sbjct: 25  LPRTPLFVSLPSL--RQLRPKHPSISAAAPKKQSDTVTTPTPTAKKNSSVEEETEEEVEE 82

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++ WIQEKALDLVEFTGSVTQAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 83  DMLWIQEKALDLVEFTGSVTQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 142

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 143 SPKAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 201

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKL 253
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKL
Sbjct: 202 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 261

Query: 254 AVQALFGKVFYLSEV 268
           AVQALFGK++YLSE+
Sbjct: 262 AVQALFGKIYYLSEL 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415850|ref|NP_568200.1| uncharacterized protein [Arabidopsis thaliana] gi|14334822|gb|AAK59589.1| unknown protein [Arabidopsis thaliana] gi|15293203|gb|AAK93712.1| unknown protein [Arabidopsis thaliana] gi|332003935|gb|AED91318.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/257 (65%), Positives = 201/257 (78%), Gaps = 13/257 (5%)

Query: 20  IPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTT--------KEVKKKAEEVEVEV 71
           +P  P  +P   LRQ R  +    + +SA   KK + T        K+     EE E EV
Sbjct: 25  LPLTPLFAPLPSLRQLRPKH----ISISAAAPKKKSETVTAPTPAAKKNSSVEEETEEEV 80

Query: 72  EEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKK 131
           EE++PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+K
Sbjct: 81  EEDMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQK 140

Query: 132 FNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191
           F+SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYA
Sbjct: 141 FSSPKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYA 199

Query: 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKR 251
           LNEKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKR
Sbjct: 200 LNEKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKR 259

Query: 252 KLAVQALFGKVFYLSEV 268
           KLAVQALFGK++YLSE+
Sbjct: 260 KLAVQALFGKIYYLSEL 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759348|dbj|BAB10003.1| unnamed protein product [Arabidopsis thaliana]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/195 (75%), Positives = 174/195 (89%), Gaps = 1/195 (0%)

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 185 DMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 244

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 245 SPKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 303

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKL 253
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKL
Sbjct: 304 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 363

Query: 254 AVQALFGKVFYLSEV 268
           AVQALFGK++YLSE+
Sbjct: 364 AVQALFGKIYYLSEL 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766314|emb|CAN72276.1| hypothetical protein VITISV_030897 [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 174/215 (80%), Gaps = 21/215 (9%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWI+EKALDLVEF+GSV QAIPGPRVG+S  PWILA+PLAY G++FVIAFV+TV+KFNS
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITFVIAFVRTVQKFNS 147

Query: 135 PKFKRKKLV---------------------NKNAMVCKTIDELFQKGGDAVNPPALKGLV 173
           PK KR+KLV                     NKNAM+CK+IDE+F  G D     AL GL+
Sbjct: 148 PKQKRRKLVPVLLICFVYFLIFEDINSNDVNKNAMLCKSIDEVFLNGRDEELQSALNGLM 207

Query: 174 QKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVRE 233
           QKTGFS E++ RKYIRYALNEKPFNP++V  LIQ RKAS+LDDSQVAEILNEISRR VR+
Sbjct: 208 QKTGFSREEIFRKYIRYALNEKPFNPEMVATLIQFRKASLLDDSQVAEILNEISRRIVRD 267

Query: 234 KGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEV 268
           KGPVVM+MSGYSEKGFKRKLAVQALFGKVFYLSE+
Sbjct: 268 KGPVVMDMSGYSEKGFKRKLAVQALFGKVFYLSEL 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807650|ref|NP_001242416.1| uncharacterized protein LOC100809862 [Glycine max] gi|255639857|gb|ACU20221.1| unknown [Glycine max]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 173/194 (89%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + +PWILA+PL Y G++FVIAFVKT++KF+S
Sbjct: 96  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSMPWILAIPLTYAGLTFVIAFVKTIRKFSS 155

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR++ V+KNA +CK++D+LF+KG D V   ALK +  KTGF +E++LRKYIRY LNE
Sbjct: 156 PKAKRRRQVSKNATLCKSLDDLFEKGRDQVKLDALKQIENKTGFDLEEILRKYIRYTLNE 215

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+V +LI LRKAS+L+DSQVAEILN+ISRR VR+KGP+VM+ SGY++KGFKRK+A
Sbjct: 216 KPFNPDMVADLIHLRKASILNDSQVAEILNDISRRIVRDKGPIVMDKSGYTDKGFKRKIA 275

Query: 255 VQALFGKVFYLSEV 268
           VQALFGKVFYLSE+
Sbjct: 276 VQALFGKVFYLSEL 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2159532	346	AT5G08540 "AT5G08540" [Arabido	0.701	0.557	0.721	2.1e-70

TAIR|locus:2159532 AT5G08540 "AT5G08540" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 140/194 (72%), Positives = 162/194 (83%)

Query:    75 LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVXXXXX 134
             +PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV     
Sbjct:    84 MPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSS 143

Query:   135 XXXXXXXLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
                    LVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNE
Sbjct:   144 PKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALNE 202

Query:   195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
             KPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKLA
Sbjct:   203 KPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLA 262

Query:   255 VQALFGKVFYLSEV 268
             VQALFGK++YLSE+
Sbjct:   263 VQALFGKIYYLSEL 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       230   0.00083  113 3  11 22  0.40    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Total cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Start:  Sat May 11 02:31:43 2013   End:  Sat May 11 02:31:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	98.49
KOG4509	247	consensus Uncharacterized conserved protein [Funct	88.7
TIGR02395	429	rpoN_sigma RNA polymerase sigma-54 factor. A sigma	86.53
PF04552	160	Sigma54_DBD: Sigma-54, DNA binding domain; InterPr	85.26
PF14297	87	DUF4373: Domain of unknown function (DUF4373)	84.49
PRK05932	455	RNA polymerase factor sigma-54; Reviewed	81.29
PLN02777	167	photosystem I P subunit (PSI-P)	81.12

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=98.49  E-value=7e-09  Score=100.12  Aligned_cols=206  Identities=16%  Similarity=0.066  Sum_probs=183.6

Q ss_pred             hhHHHHHhcchhhHHhhhhhhhhccccccccCCCCCCCCCchhHHHHHHHhhhhHhhhhhhhhhhhcCChhhhhhhhhcc
Q 023901           66 EVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNK  145 (275)
Q Consensus        66 ~~e~e~e~e~~wiqekaldlveftg~v~qaiPgPrvg~s~lPwiLAlPLAylGiTFviA~vRTvrK~tSPraKRkR~VnK  145 (275)
                      +.++..++..+|+++++.+-++|+....|.+.+++...+-++|-++-.+++.|.+.+..++....+....+.+.+....=
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~i~q~~~~~~~~~  314 (573)
T KOG0154|consen  235 ETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFYAKLSPSLPEFGVPNALQKKKKKEKPKIAQVKTKDMEKW  314 (573)
T ss_pred             cccCceecCCccceeeccccceeccccccccccCCCcceeeecccccccccccccHHHhhhcccccccchhhhhhhHHhh
Confidence            55566778899999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhc--CCCcHHHHHHH
Q 023901          146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKAS--MLDDSQVAEIL  223 (275)
Q Consensus       146 Na~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as--~L~d~evaeiL  223 (275)
                      ++++++..|+|.-... ..+.....++....|.....|-.+|..|..+|+.++|+.+...+|.+...  ++.+..++..-
T Consensus       315 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (573)
T KOG0154|consen  315 AKYLSKEKDSYLLSST-PAHEGVHTGVNTSKGAEPGPVKKEKKLYKKKEKFVNPELSKRGSHVSPSKNLKLIDVSTGLSD  393 (573)
T ss_pred             hhhhhccccccccccc-ccceecccccccccccCchhhhhhccccccchhccCccccccccccCccccccccccccCCCc
Confidence            8999988888765544 47888899999999999999999999999999999999999999998863  56666666666


Q ss_pred             HHHHHhhhhhcCCeeeeccccchhhhhhHHHHHHHHHhhhhhccCcccc
Q 023901          224 NEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSEVNNET  272 (275)
Q Consensus       224 ~E~s~Ri~~~~G~vmmn~~G~Te~G~kRK~a~~aLF~K~~yLsEl~ef~  272 (275)
                      ++.....-++++.....+.++.+.+|..+.+++.-|....+..|..+++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~s~~h~~n~~~~  442 (573)
T KOG0154|consen  394 SELEQEKSLKLVDKLKLMCLLCRRQFPSKGSLQKHLTPSDLHKENLDKH  442 (573)
T ss_pred             hHhhhhhhhhccccchhhhhhhhccCCchHHHhhhcccccchhhhHHhh
Confidence            6666666668888889999999999999999999999999999988765

>KOG4509 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.70  E-value=0.86  Score=42.11  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             hhhHhhhhhhhhhhhcCChhhhhhhhhcchhhHHhhHHHHHhcCCCCCC-chHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 023901          117 VGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVN-PPALKGLVQKTGFSMEDVLRKYIRYALNEK  195 (275)
Q Consensus       117 lGiTFviA~vRTvrK~tSPraKRkR~VnKNa~LvkSLdeyfp~gRda~~-~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr  195 (275)
                      =||-++.-..|+.+-=|.-|-|=+--+.+-..-++.|.+|+.+..+... ..-.|--++.||||-+-||++|+.=.|+|-
T Consensus        40 eGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~eQ~KI~~NaTG~SY~~iF~e~~dd~l~~V  119 (247)
T KOG4509|consen   40 EGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTHEQIKIAANATGFSYARIFGECCDDRLREV  119 (247)
T ss_pred             hhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhccCcccHHHHHHHHHhhhhhee
Confidence            4888888888887766666666666677777778889999997776655 666777789999999999999999888875


Q ss_pred             C
Q 023901          196 P  196 (275)
Q Consensus       196 ~  196 (275)
                      -
T Consensus       120 ~  120 (247)
T KOG4509|consen  120 H  120 (247)
T ss_pred             e
Confidence            3

>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor

Probab=86.53  E-value=2.4  Score=41.26  Aligned_cols=89  Identities=26%  Similarity=0.465  Sum_probs=70.0

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHH---------HHHhcC--------CCCChHHHHHHH
Q 023901          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYALNE--------KPFNPDLVVNLI  206 (275)
Q Consensus       148 ~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~R----KYi---------rY~LnE--------r~F~~d~VaDLi  206 (275)
                      .||+.=.+||..|..++.+=.||.+..++|.+-.-|=|    ||+         +|....        ...+.+.|-+.|
T Consensus       300 ~Iv~~Q~~Ff~~G~~~LkPLtlkdiA~~lglheSTVSRav~~Kyi~tp~Gi~~lk~FFs~~~~~~~~g~~~S~~~Ik~~I  379 (429)
T TIGR02395       300 AIVEHQKDFFLGGPAALKPLTLREVAEELGLHESTISRAINNKYLQTPRGVFELKYFFSRGVQTDSGEGEVSSTAIKALI  379 (429)
T ss_pred             HHHHHHHHHHhcCcccCcCCcHHHHHHHhCCCccchhhhhcCceEecCCceEEHHHhcCCccCCCCCCCccCHHHHHHHH
Confidence            45666678999999999999999999999999998887    774         566643        236777776665


Q ss_pred             HH-----HhhcCCCcHHHHHHHHH----HHHhhhhhcCC
Q 023901          207 QL-----RKASMLDDSQVAEILNE----ISRRFVREKGP  236 (275)
Q Consensus       207 ~L-----r~as~L~d~evaeiL~E----~s~Ri~~~~G~  236 (275)
                      +-     -+.--|||.+++++|.+    ||||-|-||=.
T Consensus       380 ~~lI~~E~~~~PlSD~~I~~~L~~~Gi~IaRRTVaKYRe  418 (429)
T TIGR02395       380 KELIAAEDKRKPLSDQKIAELLKEKGIKIARRTVAKYRE  418 (429)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHhcCCCeehHHHHHHHH
Confidence            52     23456999999999985    79999999943

A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations

>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data

Probab=85.26  E-value=0.58  Score=40.25  Aligned_cols=88  Identities=27%  Similarity=0.454  Sum_probs=20.7

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHHHH---------HhcCC-------CCChHHHHHHH-
Q 023901          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYIRY---------ALNEK-------PFNPDLVVNLI-  206 (275)
Q Consensus       148 ~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~R----KYirY---------~LnEr-------~F~~d~VaDLi-  206 (275)
                      +||+.=.+||..|...+.+=-++.+...+|++..-|=|    ||+..         .+.-.       .++.+.|-+.| 
T Consensus        31 ~iv~~Q~~ff~~g~~~l~PLt~~~iA~~lgl~~STVSRav~~Ky~~t~~Gi~plk~fF~~~~~~~~~~~~S~~~ik~~i~  110 (160)
T PF04552_consen   31 AIVERQKDFFLGGPGALKPLTMKDIADELGLHESTVSRAVKNKYIQTPRGIFPLKDFFSRSVSSGSGEEFSSEAIKARIK  110 (160)
T ss_dssp             ------------------------------------------------------S-----SS--SS-SS---TTH-HHHH
T ss_pred             HHHHHHHHHHhcCcccCcCCCHHHHHHHhCCCHhHHHHHHcCceeecCCeeeeHHHhccccccCCCCcccHHHHHHHHHH
Confidence            56777788999998899999999999999999988877    88753         22211       13344454433 


Q ss_pred             ---HH-HhhcCCCcHHHHHHHH----HHHHhhhhhcC
Q 023901          207 ---QL-RKASMLDDSQVAEILN----EISRRFVREKG  235 (275)
Q Consensus       207 ---~L-r~as~L~d~evaeiL~----E~s~Ri~~~~G  235 (275)
                         += -+.-.|||++++++|+    .+|||-|-||=
T Consensus       111 ~lI~~Ed~~~PlSD~~i~~~L~~~gi~isRRTVaKYR  147 (160)
T PF04552_consen  111 ELIEEEDKKKPLSDQEIAELLKEEGIKISRRTVAKYR  147 (160)
T ss_dssp             HHHTTS-TTS---HHHHHHHHTTTTS---HHHHHHHH
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHH
Confidence               32 2346899999999997    58999999984

This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.

>PF14297 DUF4373: Domain of unknown function (DUF4373)

Probab=84.49  E-value=4.9  Score=30.40  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             HHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023901          156 LFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEI  226 (275)
Q Consensus       156 yfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~  226 (275)
                      |||-.-++++-..++.|+++.|-...-|+-+=|.++-.+.-+-...= ++..+-.-.+.+.+.|.+|++|.
T Consensus         1 YFp~dv~~~~D~ki~~l~~~~G~~G~~~y~~ll~~iy~~~~y~~~~~-~~~~~a~~~~~~~~~v~~II~~~   70 (87)
T PF14297_consen    1 YFPLDVDFFSDPKIRRLMAEYGCEGYGIYWYLLEYIYKQGGYYLWWD-KLFLIARKLGVSEEYVEEIINEY   70 (87)
T ss_pred             CcccccccccCHHHHHHHHHcCCchHHHHHHHHHHHHcCCCeEeeHH-HHHHHHHHHCcCHHHHHHHHHHh
Confidence            68888899999999999999999999999998888887776632211 14444455699999999999944

>PRK05932 RNA polymerase factor sigma-54; Reviewed

Probab=81.29  E-value=3.8  Score=40.19  Aligned_cols=89  Identities=26%  Similarity=0.487  Sum_probs=68.0

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHH---------HHHhcCC-------CCChHHHHHHHH
Q 023901          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYALNEK-------PFNPDLVVNLIQ  207 (275)
Q Consensus       148 ~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~R----KYi---------rY~LnEr-------~F~~d~VaDLi~  207 (275)
                      .||+.=.+||..|..++.+=.||.+..++|+.-.-|=|    ||+         +|.....       ..+.+.|-+.|+
T Consensus       325 ~Iv~~Q~~Ff~~G~~~LkPLtlkdvAe~lglheSTVSRav~~Kyv~tp~Gi~~lk~FFs~~~~~~~g~~~S~~~Ik~~Ik  404 (455)
T PRK05932        325 CIVEQQRDFFEHGEEALKPLVLKDIAEELGMHESTISRATTNKYMATPRGIFELKYFFSSAVSTDGGGEASSTAIRALIK  404 (455)
T ss_pred             HHHHHHHHHHhCCcccCcCccHHHHHHHhCCCccchhhhhcCceeecCCceEEHHHhcccccCCCCCccccHHHHHHHHH
Confidence            35555678999999999999999999999999998887    774         5655422       245556665554


Q ss_pred             H-----HhhcCCCcHHHHHHHHH----HHHhhhhhcCC
Q 023901          208 L-----RKASMLDDSQVAEILNE----ISRRFVREKGP  236 (275)
Q Consensus       208 L-----r~as~L~d~evaeiL~E----~s~Ri~~~~G~  236 (275)
                      -     =+.--|||.+++++|.+    ||||-|-||=.
T Consensus       405 ~lI~~Ed~~~PlSD~~I~~~L~~~Gi~IaRRTVaKYRe  442 (455)
T PRK05932        405 KLIAAENPKKPLSDSKIAELLKEQGIDVARRTVAKYRE  442 (455)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCCCeehHHHHHHHH
Confidence            2     12346999999999986    89999999954

>PLN02777 photosystem I P subunit (PSI-P)

Probab=81.12  E-value=1.2  Score=39.60  Aligned_cols=27  Identities=44%  Similarity=0.699  Sum_probs=16.3

Q ss_pred             Cccccccccccc--------------cccCCCCCCCCCCCC
Q 023901            1 MASLATSSFSSL--------------QFLPRPKIPQPPFSS   27 (275)
Q Consensus         1 ~~~~~~~~~~~~--------------q~~~~p~~p~~~~s~   27 (275)
                      |+.|.++|++|+              |.+.-|.+|||+-.+
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~   41 (167)
T PLN02777          1 MTPLSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQS   41 (167)
T ss_pred             CCccccccccccccCCCCCcCcccCCccccCCCCCCCCccc
Confidence            677777766653              555556666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 34/203 (16%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 36  RTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELP---WIQEKALDLVEFTGSV 92
           R  Y+F    +  +  + S  T+   ++ + +  + +          +  L L +   ++
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ---AL 144

Query: 93  TQAIPGPRV------GQSKLPWILAVP-LAYVGV----SFVIAFVKTVKKFNSPKFKRKK 141
            +  P   V      G  K    +A+       V     F I ++  +K  NSP+   + 
Sbjct: 145 LELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEM 201

Query: 142 LVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDL 201
           L      +   ID  +    D  +   L+             ++  +R  L  KP+   L
Sbjct: 202 LQK----LLYQIDPNWTSRSDHSSNIKLR----------IHSIQAELRRLLKSKPYENCL 247

Query: 202 VVNLIQLRKASMLDDSQVAEILN 224
           +V          L + Q A+  N
Sbjct: 248 LV----------LLNVQNAKAWN 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
4aq3_A	169	Apoptosis regulator BCL-2, BCL-2-like protein 1; c	90.13

>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*

Probab=90.13  E-value=0.13  Score=43.01  Aligned_cols=68  Identities=21%  Similarity=0.315  Sum_probs=40.4

Q ss_pred             HhCCChHHHHHHHHHHHhcCCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS  242 (275)
Q Consensus       175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi--~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~  242 (275)
                      .+||+.-+|+++||.|.|+.+-+.-....+=+  +-..-.+-..++|.+.|+.++.-+-++|....-|+.
T Consensus         9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~   78 (169)
T 4aq3_A            9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS   78 (169)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            57999999999999999999977643222111  011123456778899999999888888877655553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1g5ma_	164	Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}	92.18
d2f2ab1	107	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	85.98
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	80.23

>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Membrane and cell surface proteins and peptides
fold: Toxins' membrane translocation domains
superfamily: Bcl-2 inhibitors of programmed cell death
family: Bcl-2 inhibitors of programmed cell death
domain: Bcl-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.013  Score=46.76  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             HhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHH--HhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQL--RKASMLDDSQVAEILNEISRRFVREKGPVVMNMS  242 (275)
Q Consensus       175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~L--r~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~  242 (275)
                      .+||+..||++.||.|.|+.+-|.-....|...-  ..-.+-..++|.+.|+.++..+=++|....-||.
T Consensus         4 ~~~~~~Relv~dyI~yrL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~vgdele~~~~~~f~~m~   73 (164)
T d1g5ma_           4 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS   73 (164)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCCCCCTTTCCSCSCSSCSCCSSSSSHHHHHHHHHHHHHHHHCSSSTGGG
T ss_pred             ccccchHHHHHHHHHHHHhccCCCccCCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999887742211111000  0112344556777777777777666665544443

>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: GatB/YqeY motif
superfamily: GatB/YqeY motif
family: GatB/GatE C-terminal domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.98  E-value=1.5  Score=31.58  Aligned_cols=86  Identities=20%  Similarity=0.393  Sum_probs=52.8

Q ss_pred             hhhhhhhhhcc------hhhHH---hhHHHHHhcCCCC-CCchHHHHHHHHhCCChHHHHHHHHHH---HhcCCCCChHH
Q 023901          135 PKFKRKKLVNK------NAMVC---KTIDELFQKGGDA-VNPPALKGLVQKTGFSMEDVLRKYIRY---ALNEKPFNPDL  201 (275)
Q Consensus       135 PraKRkR~VnK------Na~Lv---kSLdeyfp~gRda-~~~gvLk~L~~KTGFs~~Ei~RKYirY---~LnEr~F~~d~  201 (275)
                      |..||+|.++.      .+.+.   ..+.+||.+--.. .++   |   .-..|=..|+++ |+..   .+.+-+++|+.
T Consensus         3 P~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~---k---~~aNwl~~el~~-~ln~~~~~i~~~~i~~~~   75 (107)
T d2f2ab1           3 PDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADV---K---LTSNWLMGGVNE-YLNKNQVELLDTKLTPEN   75 (107)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCH---H---HHHHHHHTHHHH-HHHTTTCCTTTSSCCHHH
T ss_pred             hHHHHHHHHHHcCcCHHHHHHHHccHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHH-HHHhcCCccccCCcCHHH
Confidence            77888888775      22222   4567788752111 111   1   112222334433 1111   12344799999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023901          202 VVNLIQLRKASMLDDSQVAEILNEIS  227 (275)
Q Consensus       202 VaDLi~Lr~as~L~d~evaeiL~E~s  227 (275)
                      +++||.|=..=-+|....++||.++-
T Consensus        76 la~Li~lv~~g~Is~~~aK~vl~~~~  101 (107)
T d2f2ab1          76 LAGMIKLIEDGTMSSKIAKKVFPELA  101 (107)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            99999999999999999999998754

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=80.23  E-value=1  Score=30.26  Aligned_cols=44  Identities=14%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 023901          149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK  195 (275)
Q Consensus       149 LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr  195 (275)
                      |.+.|-+.|.+++  +.++.+|+|...+|.+..++ |.+++|+.++.
T Consensus         8 l~~~I~~~~~~~g--~~PP~vrdl~~~l~~~e~~~-~~lL~~l~~~G   51 (64)
T d1lvaa3           8 LLKDLEDKYRVSR--WQPPSFKEVAGSFNLDPSEL-EELLHYLVREG   51 (64)
T ss_dssp             HHHHHHHHHHHHT--TSCCBHHHHHHHTTCCHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC--CCCCcHHHHHHHhCCCHHHH-HHHHHHHHHCC
Confidence            5566677776665  46777888888888777665 77888877764