Citrus Sinensis ID: 023911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MISFLRKLPFSKIMDSSSTVASSKTQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEEEEEcccccccccccccccccEEEccHHHHcccccEEEEEEEEccEEEEEEEEEEEEccccEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccHHHccccccEEccccccccccccHHHHHHHHHHHHHcccHccEEEEEEcccccccccEEEEEEEEEEccccccEccccHHHHHHHHcccHHHHcccHcccEEEEEEcccEEEEEEEccccccccEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
misflrklpfskimdssstvassKTQRLVALAQQLrlykppppfdemeEQQIQETAGKVVSqvgfqesvtpiikdperfrpkKAAVLICLFEGDAGDLRVILTKRssrmsthsgeislpggkaeegdrddgdtaTREAKeeigldplLVEVVTVLEPFLSKHLLRVVPVIgilsnkkaftptpnpaeveevfdaplemfikdenrRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAAsvvyqkppafieqnpkfkfptvinkdtivp
Flexible Loop (DISEMBL)
misflrklpfskimdssstvassktQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQEsvtpiikdperfrPKKAAVLICLFEGDAGDLRVILTkrssrmsthsgeislpggkaeegdrddGDTATREAkeeigldpllvEVVTVLEPFLSKHLLRVVPVIGILSnkkaftptpnpaevEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPpafieqnpkfkfptvinkdtivp
Low Complexity Region (SEG)
MISFLRKLPFSKIMDSSSTVASSKTqrlvalaqqlrlYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGldpllvevvtvlepFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP
Disordered region (IsUnstruct)
***********************************************************VSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILT**************************************IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFT********EEVFDAPLEMFI*********REWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVIN******
Disordered Region (DISOPRED)
**SFLRKLPFS***********************L*********************************************PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPT*I*******
Disordered Region (DISEMBL)
MISFLRKLPFSKI************QRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRS******************************EAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP
Disordered Region (DISPRO)
MISFLRKLPFSKIMDSS****SSKTQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGK**SQVGFQES*TPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISFLRKLPFSKIMDSSSTVASSKTQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q8GYB1	285	Nudix hydrolase 15, mitoc	yes	no	0.876	0.845	0.774	1e-109
O22951	302	Nudix hydrolase 22, chlor	no	no	0.854	0.778	0.707	9e-96
Q8LET2	222	Nudix hydrolase 11 OS=Ara	no	no	0.676	0.837	0.586	4e-60
Q99P30	236	Peroxisomal coenzyme A di	yes	no	0.621	0.724	0.363	2e-23
P0C024	238	Peroxisomal coenzyme A di	yes	no	0.621	0.718	0.357	3e-23
Q6D4L1	192	Uncharacterized Nudix hyd	yes	no	0.618	0.885	0.327	5e-18
Q7N3M0	187	Uncharacterized Nudix hyd	yes	no	0.578	0.850	0.317	4e-16
A4WBH1	192	Uncharacterized Nudix hyd	yes	no	0.585	0.838	0.323	2e-15
A8AFP5	192	Uncharacterized Nudix hyd	yes	no	0.541	0.776	0.335	4e-15
Q9CR24	210	Nucleoside diphosphate-li	no	no	0.56	0.733	0.343	4e-14

>sp|Q8GYB1|NUD15_ARATH Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/244 (77%), Positives = 213/244 (87%), Gaps = 3/244 (1%)

Query: 27  RLVALAQQLRLYKPPPP--FDEMEEQQI-QETAGKVVSQVGFQESVTPIIKDPERFRPKK 83
           RL ALAQQLR YKPPP   FD+ EE Q  QETAGKVVSQVGFQES+ P+ KDP+RF+PK+
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 84  AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG 143
           AAVLICLFEGD GDLRVILTKRSS++STHSGE+SLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 144 LDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203
           LDP LV+VVT LEPFLSKHLLRV+PVIGIL +K  F P PNP EVE VFDAPLEMF+KDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 204 NRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFK 263
           NRR EEREWMGEK+L+H+FDY   +K Y+IWGLTAGILIRAASV Y++PPAFIEQ PKFK
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFK 281

Query: 264 FPTV 267
           +P +
Sbjct: 282 YPKM 285

Coenzyme A diphosphatase which mediates the cleavage of oxidized CoA. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|O22951|NUD22_ARATH Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2

 Score =  349 bits (896), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 172/243 (70%), Positives = 200/243 (82%), Gaps = 8/243 (3%)

Query: 25  TQRLVALAQQLRLYKPP--PPFDEMEEQ-QIQETAGKVVSQVGFQESVTPIIKDPERFRP 81
           + RL+ALAQQLR+YKPP    FDE EE    +E+  K ++ VGFQES+ P+     RFRP
Sbjct: 19  SSRLLALAQQLRVYKPPLSSSFDEREELLAYKESTRKSITHVGFQESMAPV-----RFRP 73

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           KKAAVLICLFEGD GDLRVILTKRSS +STHSGE+SLPGGKAEE D+DDG TATREA+EE
Sbjct: 74  KKAAVLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEE 133

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           IGLDP LV+VV  LEPFLS+HLLRV+PV+GIL ++KAF PTPNPAEVE V DAP EMF+K
Sbjct: 134 IGLDPSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLK 193

Query: 202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPK 261
           DENRR EE +WMGEK L+HFFDY+  +  Y+IWGLTA ILIRAA+VVYQ+PPAFIEQ P 
Sbjct: 194 DENRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPN 253

Query: 262 FKF 264
            K+
Sbjct: 254 LKY 256

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8LET2|NUD11_ARATH Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT11 PE=1 SV=2

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 146/191 (76%), Gaps = 5/191 (2%)

Query: 77  ERFRPKKAAVLICLFEG---DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
           + F  K +AVL+CL++    D  +LRVILTKRS+ +S+H GE++LPGGK ++ D+DD  T
Sbjct: 27  QHFPAKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIAT 86

Query: 134 ATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFD 193
           A REA+EEIGLDP LV +++VLEPF++K  + V PVIG L +KKAF   PNPAEVEE+FD
Sbjct: 87  ALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFD 146

Query: 194 APLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK--YLIWGLTAGILIRAASVVYQK 251
            PLEMF+KD NRR EERE  GE++LL +FDY  E+K+  ++IW LTAGILIR AS+VYQ+
Sbjct: 147 VPLEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQR 206

Query: 252 PPAFIEQNPKF 262
            P F E+ P F
Sbjct: 207 LPEFQERKPSF 217

Coenzyme A diphosphatase which mediates the cleavage of CoA into 3',5'-ADP from CoA and 4'-phosphopantetheine. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q99P30|NUDT7_MOUSE Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus GN=Nudt7 PE=1 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
            K +VL+ L     G L ++ T RS ++    GE+  PGGK +  D DD  TA REA+EE
Sbjct: 38  NKFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTATALREAQEE 96

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           +GL P  VEVV+ L P++  +   V PV+G L +   F   PN  EV+EVF  PL+ F+ 
Sbjct: 97  VGLHPHQVEVVSHLVPYVFDNDALVTPVVGFLDHN--FQAQPNADEVKEVFFVPLDYFLH 154

Query: 202 DENRRDEEREWMGEKFLLHFFDYE--YENKKYLIWGLTAGILIRAASVVYQKPPAF 255
            +    ++    G  F++H F+Y+       YLI G+T+ + +  A ++ ++ PAF
Sbjct: 155 PQVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAF 210

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P0C024|NUDT7_HUMAN Peroxisomal coenzyme A diphosphatase NUDT7 OS=Homo sapiens GN=NUDT7 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
            K +VL+ L   + G L ++ T RS ++    GE+  PGGK +  D DD  TA REA+EE
Sbjct: 38  NKYSVLLPLVAKE-GKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEE 96

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           +GL P  VEVV  L P L      + P +G++ +   F   PNPAEV++VF  PL  F+ 
Sbjct: 97  VGLRPHQVEVVCCLVPCLIDTDTLITPFVGLIDHN--FQAQPNPAEVKDVFLVPLAYFLH 154

Query: 202 DENRRDEEREWMGEKFLLHFFDYEY--ENKKYLIWGLTAGILIRAASVVYQKPPAF 255
            +         +G +F+ H F+Y    +   Y I G+TA + +  A ++ +K P F
Sbjct: 155 PQVHDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTF 210

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6D4L1|NUDL_ERWCT Uncharacterized Nudix hydrolase NudL OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=nudL PE=3 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 16/186 (8%)

Query: 73  IKDPERFRP----KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDR 128
           ++ P   RP    ++AAVL+ +       L  +LT+RS+ +  H+G+++ PGG A++ DR
Sbjct: 17  LQLPPSLRPVHQQRQAAVLVPIICHPTPTL--LLTRRSADLRKHAGQVAFPGGAADKTDR 74

Query: 129 DDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEV 188
              +TA REA+EE+ + P  V+V+ VL P  S    +V PV+G+++ +  F   PN  EV
Sbjct: 75  SIIETALREAQEEVAIPPENVQVLGVLPPLDSVSGFQVTPVVGLIAAQTRF--HPNEDEV 132

Query: 189 EEVFDAPL-EMF-IKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAAS 246
            E+F+ PL E F +      D ER+    +  L ++  ++      +WGLTA I+ + A 
Sbjct: 133 AELFEMPLDEAFALTRYYPLDIERKQQRHRVYLSWYQQQF------VWGLTAAIIHQLAL 186

Query: 247 VVYQKP 252
            +  +P
Sbjct: 187 QISDRP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q7N3M0|NUDL_PHOLL Uncharacterized Nudix hydrolase NudL OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=nudL PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           + AAVL+ +       L  +LT+RS+ + +H+G+++ PGG A+  D+    TA REA+EE
Sbjct: 27  RHAAVLLPIICKPKPTL--LLTRRSATLRSHAGQVAFPGGVADPKDKSIIATALREAEEE 84

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           + +    V+V+  L P  S     V P++G+L      +   NPAEV ++F+ PL   + 
Sbjct: 85  VNIPHQKVQVLGQLAPLNSSGGYLVTPIVGLL--PPGLSLHSNPAEVAKIFEVPLSEALS 142

Query: 202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVV 248
             +    +    G++  ++F+ Y+    ++LIWGLTA I+ + A  V
Sbjct: 143 LSSYHYLDVSRRGQQHRVYFYWYQ----QHLIWGLTATIIHQLAQQV 185

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WBH1|NUDL_ENT38 Uncharacterized Nudix hydrolase NudL OS=Enterobacter sp. (strain 638) GN=nudL PE=3 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++AAVLI L   +   L  +LTKR+S M  H G+++ PGG  +  D      A REA EE
Sbjct: 30  RQAAVLIPLVRREQPGL--LLTKRASHMRKHPGQVAFPGGAVDSTDASLIAAALREAHEE 87

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           + + P +VE++ VL P  S    +V PV+GI+     +  +    EV  VF+ PL   ++
Sbjct: 88  VAIPPEVVEIIGVLPPVDSVTGFQVTPVVGIIPPDLHYHASEE--EVAAVFEMPLSEALR 145

Query: 202 DENRR--DEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKP 252
                  D +R     +  L ++ +      Y +WG+TAGI+   A  +  KP
Sbjct: 146 LSRYHPLDIQRRGHDHRVWLSWYQH------YFVWGMTAGIIRELALQIGMKP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A8AFP5|NUDL_CITK8 Uncharacterized Nudix hydrolase NudL OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=nudL PE=3 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 24/173 (13%)

Query: 77  ERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATR 136
           E    ++AAVLI +       L  +LT+RS+R+  H+G+++ PGG  +  D      A R
Sbjct: 25  ETLNRRQAAVLIPVVRRARPGL--LLTQRSARLRKHAGQVAFPGGAVDSSDASLIAAALR 82

Query: 137 EAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPL 196
           EA+EE+ + P  VEV+ VL P  S    +V PV+GI+     +  + +  EV  VF+ PL
Sbjct: 83  EAQEEVAIPPESVEVIGVLPPVDSVTGFQVTPVVGIIPPNLHYHASED--EVASVFEMPL 140

Query: 197 EMFIK-------DENRR-DEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
              ++       D  RR D  R W+          YE+    Y +WG+TAGI+
Sbjct: 141 SEALRLGRYHPLDIYRRGDSHRVWLSW--------YEH----YFVWGMTAGII 181

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CR24|NUDT8_MOUSE Nucleoside diphosphate-linked moiety X motif 8, mitochondrial OS=Mus musculus GN=Nudt8 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 15/169 (8%)

Query: 78  RFRPKKAAVLI--CLFEGDAGDLRVILTKRSSRM-STHSGEISLPGGKAEEGDRDDGDTA 134
           R RP  AAVL+  CL  G      ++ T RSSR+   H GE+S PGGK +  D+D   TA
Sbjct: 26  RSRPAAAAVLVPLCLVRGVPA---LLYTLRSSRLVGRHKGEVSFPGGKCDPDDQDVIHTA 82

Query: 135 TREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDA 194
            RE +EE+GL+     V  VL+P   +    +VPV+  +      +  PN  EV+EVF+ 
Sbjct: 83  LRETQEELGLEVPKEHVWGVLQPVYDREKATIVPVLANVGPLDLQSLRPNLEEVDEVFEM 142

Query: 195 PLEMFIKDENRRDEEREWMGEKFLLHFFDYE---YENKKYLIWGLTAGI 240
            L   ++ +N+        G       F Y    + +  + +WGLTA I
Sbjct: 143 SLAHLLQTQNQGYTHFCQGGH------FSYTLPVFLHGPHRVWGLTAVI 185

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224116946	257	predicted protein [Populus trichocarpa]	0.92	0.984	0.799	1e-116
356548635	288	PREDICTED: nudix hydrolase 15, mitochond	1.0	0.954	0.722	1e-114
225443508	282	PREDICTED: nudix hydrolase 15, mitochond	0.989	0.964	0.733	1e-114
449433774	350	PREDICTED: nudix hydrolase 15, mitochond	0.952	0.748	0.752	1e-113
388504224	286	unknown [Medicago truncatula]	0.967	0.930	0.733	1e-111
297851322	269	F1K23.5 [Arabidopsis lyrata subsp. lyrat	0.938	0.959	0.746	1e-110
356521436	263	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.952	0.996	0.749	1e-110
255563058	248	Nudix hydrolase 15, mitochondrial precur	0.887	0.983	0.771	1e-110
18396900	293	nudix hydrolase 15 [Arabidopsis thaliana	0.905	0.849	0.761	1e-109
297740473	482	unnamed protein product [Vitis vinifera]	0.938	0.535	0.743	1e-109

>gi|224116946|ref|XP_002317435.1| predicted protein [Populus trichocarpa] gi|222860500|gb|EEE98047.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/254 (79%), Positives = 230/254 (90%), Gaps = 1/254 (0%)

Query: 22  SSKTQRLVALAQQLRLYKPPPPF-DEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFR 80
           S  +QRL+ALAQQLR YKPP P  DE+EEQ I+E+AGKVVSQVGFQES T I KDPERFR
Sbjct: 3   SYGSQRLMALAQQLRFYKPPSPSPDEIEEQNIEESAGKVVSQVGFQESATSIFKDPERFR 62

Query: 81  PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKE 140
           PK+AAVL+C+FEGDAG+ RVILTKRSSR+STHSGE+SLPGGK +E D+DD +TATREAKE
Sbjct: 63  PKRAAVLVCIFEGDAGEFRVILTKRSSRLSTHSGEVSLPGGKVDERDKDDFETATREAKE 122

Query: 141 EIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200
           EIGLDP LV+VVTVLEPFLSKHLLRV+PVIGILSNKKAF PTPNPAEVE +FDAPLEMFI
Sbjct: 123 EIGLDPSLVDVVTVLEPFLSKHLLRVIPVIGILSNKKAFKPTPNPAEVEAIFDAPLEMFI 182

Query: 201 KDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNP 260
           KDENRR EE EWMGEK+L+HFFDYE ENKKYLIWGLTAG+LI+AASVV+Q+PPAF+EQNP
Sbjct: 183 KDENRRVEESEWMGEKYLIHFFDYETENKKYLIWGLTAGVLIKAASVVFQRPPAFMEQNP 242

Query: 261 KFKFPTVINKDTIV 274
           +FKFP   NKD ++
Sbjct: 243 RFKFPKGANKDMVM 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548635|ref|XP_003542706.1| PREDICTED: nudix hydrolase 15, mitochondrial-like isoform 1 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/288 (72%), Positives = 235/288 (81%), Gaps = 13/288 (4%)

Query: 1   MISFLRKLP------------FSKIMDSSSTVAS-SKTQRLVALAQQLRLYKPPPPFDEM 47
           MIS LR LP             +K MDSSS  +S   +QRL ALAQ LR YK P   +++
Sbjct: 1   MISILRTLPTTRSLLPRASSSITKFMDSSSNASSIGGSQRLFALAQHLRQYKAPSFPEDI 60

Query: 48  EEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSS 107
            EQ I+E  GKVVSQVGFQES  PI ++PE+FRPKKAAVLICLFEGD GDLRVILTKRSS
Sbjct: 61  VEQSIEEIGGKVVSQVGFQESAIPIGQNPEKFRPKKAAVLICLFEGDDGDLRVILTKRSS 120

Query: 108 RMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVV 167
           ++STHSGE++LPGGK EEGD+DDGDTA REAKEEIGLDP LV VVTVLEPFLSKHLLRVV
Sbjct: 121 KLSTHSGEVALPGGKTEEGDKDDGDTAKREAKEEIGLDPELVNVVTVLEPFLSKHLLRVV 180

Query: 168 PVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYE 227
           PVIGIL +KKAF P  NPAEVE VFDAPLEMF+KDENRR +EREWMGEK+LLHFFDY+  
Sbjct: 181 PVIGILHDKKAFKPVLNPAEVEAVFDAPLEMFLKDENRRQDEREWMGEKYLLHFFDYDIG 240

Query: 228 NKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP 275
           +KKY+IWGLTAGILIRAASVVYQ+ PAF+EQNPKFK P  ++KDT +P
Sbjct: 241 HKKYIIWGLTAGILIRAASVVYQRQPAFVEQNPKFKLPQDVSKDTTIP 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443508|ref|XP_002276381.1| PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/285 (73%), Positives = 239/285 (83%), Gaps = 13/285 (4%)

Query: 1   MISFLRKLPFS------KIMDSSSTVASSKTQRLVALAQQLRLYKPPPP----FDEMEEQ 50
           MIS LR++P +      KIM+SS+ V  S  QRL+ LA+QLRLYKP PP    +D++EE+
Sbjct: 1   MISILRRVPLTLSSPVYKIMESSNMVGGS--QRLLNLARQLRLYKPSPPPSDDYDDLEER 58

Query: 51  QIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMS 110
             +E AGKVVSQVGF ES T +  +  RFRPK+AAVLICLFEGDAGDLRVILTKRSS++S
Sbjct: 59  GSEEAAGKVVSQVGFAESATSVEYE-GRFRPKRAAVLICLFEGDAGDLRVILTKRSSKLS 117

Query: 111 THSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVI 170
           THSGE+SLPGGK EEGD+DD DTATREA EEIGLDP LV VVTVLEPFLSKHLLRVVPVI
Sbjct: 118 THSGEVSLPGGKQEEGDKDDADTATREANEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVI 177

Query: 171 GILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK 230
           GILS+KKAF P PN  EV+ VFDAPLEMFIKDENRR EEREWMG+K+L+HFFDYE ENKK
Sbjct: 178 GILSDKKAFEPAPNADEVDAVFDAPLEMFIKDENRRSEEREWMGQKYLIHFFDYEMENKK 237

Query: 231 YLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP 275
           YLIWGLTAGILIRAASVV+Q+PPAF+EQ P FK P  ++KDTI+P
Sbjct: 238 YLIWGLTAGILIRAASVVFQQPPAFLEQKPNFKVPRGVDKDTIMP 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433774|ref|XP_004134672.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus] gi|449531890|ref|XP_004172918.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/271 (75%), Positives = 232/271 (85%), Gaps = 9/271 (3%)

Query: 1   MISFLRKL--PF------SKIMDSSSTVASSKTQRLVALAQQLRLYKPPPPFDEMEEQQI 52
           MIS LR+L  PF      SK+MDSS+  +S  ++RLVALAQQLRLYKPPP  D++EE   
Sbjct: 1   MISILRRLSKPFLCTTRVSKLMDSSAD-SSGCSRRLVALAQQLRLYKPPPLLDDIEEPSS 59

Query: 53  QETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTH 112
           +E+ GKVVSQVGF ES TPI +DPERFRPK+AAVLICLFEG+ GDLRVILTKRSSR+STH
Sbjct: 60  EESNGKVVSQVGFPESTTPIPRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTH 119

Query: 113 SGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGI 172
           SGE++LPGGKAEEGD DDG TATREAKEEIGLDP LV VVTVLEPFLSKHLLRVVPVIGI
Sbjct: 120 SGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGI 179

Query: 173 LSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYL 232
           ++ + AF P PNPAEV+EVFDAPL+MF+KDENRR EEREWMG K+L+HFFDYE ENKK++
Sbjct: 180 MNERNAFNPRPNPAEVDEVFDAPLDMFLKDENRRSEEREWMGCKYLVHFFDYETENKKFV 239

Query: 233 IWGLTAGILIRAASVVYQKPPAFIEQNPKFK 263
           IWGLTAGILIRAAS+V Q  P F+EQNP FK
Sbjct: 240 IWGLTAGILIRAASIVLQSSPPFLEQNPIFK 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504224|gb|AFK40178.1| unknown [Medicago truncatula]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/270 (73%), Positives = 231/270 (85%), Gaps = 4/270 (1%)

Query: 6   RKLPFSKIMDSSSTVASSKTQRLVALAQQLRLYKPPPPF--DEMEEQQIQETAGKVVSQV 63
           R +  +K+MDSSS V +S +QRL+ALAQ LRLYKPPPPF  D +E+   +E+ GK+VSQ+
Sbjct: 15  RTVSVTKVMDSSSNVTTSGSQRLLALAQHLRLYKPPPPFPEDVLEQSIEEESGGKIVSQL 74

Query: 64  GFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKA 123
           GF ES T +I++PE+F PKKAAVLICLFEGD GDLRVILTKRSS++STHSGE+SLPGGK 
Sbjct: 75  GFPESAT-MIQNPEKFSPKKAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKV 133

Query: 124 EEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTP 183
           EEGD+DD DTA REA+EEIGLDP  V VVTVLEPFLSKHLLRVVPVIGIL +KK F P  
Sbjct: 134 EEGDKDDADTAKREAEEEIGLDPEPVNVVTVLEPFLSKHLLRVVPVIGILHDKKTFKPVL 193

Query: 184 NPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDY-EYENKKYLIWGLTAGILI 242
           NPAEVE VFDAPLEMF+KDENR  EEREWMGEK+L+HFFDY + E K YLIWGLTAGILI
Sbjct: 194 NPAEVESVFDAPLEMFLKDENRSQEEREWMGEKYLIHFFDYIDIEQKNYLIWGLTAGILI 253

Query: 243 RAASVVYQKPPAFIEQNPKFKFPTVINKDT 272
           RAAS+VY++PPAF+EQNPKFK P V++KD+
Sbjct: 254 RAASIVYKRPPAFVEQNPKFKVPQVVSKDS 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851322|ref|XP_002893542.1| F1K23.5 [Arabidopsis lyrata subsp. lyrata] gi|297339384|gb|EFH69801.1| F1K23.5 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/264 (74%), Positives = 224/264 (84%), Gaps = 6/264 (2%)

Query: 18  STVASS---KTQRLVALAQQLRLYKPPPP--FDEMEEQQI-QETAGKVVSQVGFQESVTP 71
           ST  SS    + RL ALAQQLR YKPPP   FD+ EE Q  QETAGKVVSQVGFQES+ P
Sbjct: 6   STATSSFGGGSSRLSALAQQLRRYKPPPSSSFDDAEEMQTDQETAGKVVSQVGFQESIAP 65

Query: 72  IIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDG 131
           + KDPERF+PK+AAVLIC+FEGD GDLRVILTKRSS++STHSGE+SLPGGKAEE D+DDG
Sbjct: 66  VSKDPERFKPKRAAVLICIFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDG 125

Query: 132 DTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEV 191
            TATREA+EEIGLDP LV VVT LEPFLSKHLLRV+PVIGIL +K  F PTPNP EVE+V
Sbjct: 126 MTATREAEEEIGLDPSLVAVVTSLEPFLSKHLLRVIPVIGILRDKTKFNPTPNPGEVEDV 185

Query: 192 FDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQK 251
           FDAPLEMF+KDENRR EEREWMGEK+L+H+FDY   +K Y+IWGLTAGILIRAASV Y++
Sbjct: 186 FDAPLEMFLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYER 245

Query: 252 PPAFIEQNPKFKFPTVINKDTIVP 275
           PPAFIEQ PKFK+P ++ K T +P
Sbjct: 246 PPAFIEQCPKFKYPKMVEKHTCMP 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521436|ref|XP_003529362.1| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 15, mitochondrial-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/263 (74%), Positives = 227/263 (86%), Gaps = 1/263 (0%)

Query: 14  MDSSSTVAS-SKTQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPI 72
           MDSSS  +S   ++RL+ALAQ LR YK     +++ EQ I+E+ GKVVSQVGFQES TPI
Sbjct: 1   MDSSSNASSIGGSRRLLALAQHLRQYKALSFPEDIVEQSIEESGGKVVSQVGFQESATPI 60

Query: 73  IKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGD 132
            ++PE+FRPKKAAVLICLFEGD GDLRVILTKRSS++STHSGE++LPGGKA+EGD+DDGD
Sbjct: 61  DQNPEKFRPKKAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVALPGGKAKEGDKDDGD 120

Query: 133 TATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVF 192
           TA REAKEEIGLDP LV VVT LEPFLSKHLLRVVPVIGIL +KKAF P  NPAEVE VF
Sbjct: 121 TAKREAKEEIGLDPELVNVVTXLEPFLSKHLLRVVPVIGILHDKKAFKPVLNPAEVEAVF 180

Query: 193 DAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKP 252
           DAPLEMF+KD+NRR +EREWMGEK+LLHFFDY   +KKY+IWGLTAGILIR ASVVYQ+ 
Sbjct: 181 DAPLEMFLKDKNRRQDEREWMGEKYLLHFFDYGIGHKKYIIWGLTAGILIRXASVVYQRL 240

Query: 253 PAFIEQNPKFKFPTVINKDTIVP 275
           PAF+EQNPKFK P  ++KDTI+P
Sbjct: 241 PAFVEQNPKFKLPQDVSKDTIIP 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563058|ref|XP_002522533.1| Nudix hydrolase 15, mitochondrial precursor, putative [Ricinus communis] gi|223538224|gb|EEF39833.1| Nudix hydrolase 15, mitochondrial precursor, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/254 (77%), Positives = 219/254 (86%), Gaps = 10/254 (3%)

Query: 22  SSKTQRLVALAQQLRLYKPPPPF-DEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFR 80
            S + RL+ALA QLR YKPP    DE+EEQ I+         VGFQESVTPI KDP+RFR
Sbjct: 3   CSGSNRLMALAHQLRFYKPPSASPDEIEEQTIE---------VGFQESVTPIPKDPQRFR 53

Query: 81  PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKE 140
           PK+AAVL+C+F GD GD RVILTKRSSR+STHSGE+SLPGGKAEEGD+DDG+TATREAKE
Sbjct: 54  PKRAAVLVCIFAGDDGDFRVILTKRSSRLSTHSGEVSLPGGKAEEGDKDDGETATREAKE 113

Query: 141 EIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200
           EIGLDP LV VVTVLEPFLSKHLLRV+PVIGIL +KKAF   PNPAEVE VFDAPLEMFI
Sbjct: 114 EIGLDPTLVHVVTVLEPFLSKHLLRVIPVIGILRDKKAFKAMPNPAEVEAVFDAPLEMFI 173

Query: 201 KDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNP 260
           KDENRR EEREWMGEK+L+HFFDYE E KKYLIWGLTAGILIRAASVV+Q+PPAF+EQNP
Sbjct: 174 KDENRRVEEREWMGEKYLVHFFDYETEKKKYLIWGLTAGILIRAASVVFQRPPAFVEQNP 233

Query: 261 KFKFPTVINKDTIV 274
           KF+FP V+N DT++
Sbjct: 234 KFRFPKVVNSDTVM 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396900|ref|NP_564316.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|42570219|ref|NP_849725.2| nudix hydrolase 15 [Arabidopsis thaliana] gi|79318810|ref|NP_001031104.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|110736910|dbj|BAF00412.1| hypothetical protein [Arabidopsis thaliana] gi|332192901|gb|AEE31022.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|332192903|gb|AEE31024.1| nudix hydrolase 15 [Arabidopsis thaliana] gi|332192905|gb|AEE31026.1| nudix hydrolase 15 [Arabidopsis thaliana]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/252 (76%), Positives = 218/252 (86%), Gaps = 3/252 (1%)

Query: 27  RLVALAQQLRLYKPPPP--FDEMEEQQI-QETAGKVVSQVGFQESVTPIIKDPERFRPKK 83
           RL ALAQQLR YKPPP   FD+ EE Q  QETAGKVVSQVGFQES+ P+ KDP+RF+PK+
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 84  AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG 143
           AAVLICLFEGD GDLRVILTKRSS++STHSGE+SLPGGKAEE D+DDG TATREA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 144 LDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203
           LDP LV+VVT LEPFLSKHLLRV+PVIGIL +K  F P PNP EVE VFDAPLEMF+KDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 204 NRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFK 263
           NRR EEREWMGEK+L+H+FDY   +K Y+IWGLTAGILIRAASV Y++PPAFIEQ PKFK
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFK 281

Query: 264 FPTVINKDTIVP 275
           +P ++ K T +P
Sbjct: 282 YPKMVEKHTCMP 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740473|emb|CBI30655.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/265 (74%), Positives = 225/265 (84%), Gaps = 7/265 (2%)

Query: 14  MDSSSTVASSKTQRLVALAQQLRLYKPPPP----FDEMEEQQIQETAGKVVSQVGFQESV 69
           M+SS+ V  S  QRL+ LA+QLRLYKP PP    +D++EE+  +E AGKVVSQVGF ES 
Sbjct: 1   MESSNMVGGS--QRLLNLARQLRLYKPSPPPSDDYDDLEERGSEEAAGKVVSQVGFAESA 58

Query: 70  TPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRD 129
           T +  +  RFRPK+AAVLICLFEGDAGDLRVILTKRSS++STHSGE+SLPGGK EEGD+D
Sbjct: 59  TSVEYEG-RFRPKRAAVLICLFEGDAGDLRVILTKRSSKLSTHSGEVSLPGGKQEEGDKD 117

Query: 130 DGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVE 189
           D DTATREA EEIGLDP LV VVTVLEPFLSKHLLRVVPVIGILS+KKAF P PN  EV+
Sbjct: 118 DADTATREANEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGILSDKKAFEPAPNADEVD 177

Query: 190 EVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVY 249
            VFDAPLEMFIKDENRR EEREWMG+K+L+HFFDYE ENKKYLIWGLTAGILIRAASVV+
Sbjct: 178 AVFDAPLEMFIKDENRRSEEREWMGQKYLIHFFDYEMENKKYLIWGLTAGILIRAASVVF 237

Query: 250 QKPPAFIEQNPKFKFPTVINKDTIV 274
           Q+PPAF+EQ P FK P V++ + + 
Sbjct: 238 QQPPAFLEQKPNFKVPRVMDSEDLT 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2055420	302	NUDT22 "nudix hydrolase homolo	0.832	0.758	0.651	5e-76
TAIR|locus:2152415	222	NUDT11 "nudix hydrolase homolo	0.676	0.837	0.539	2e-49
UNIPROTKB|H9KZB9	307	H9KZB9 "Uncharacterized protei	0.621	0.557	0.386	4.8e-23
UNIPROTKB|E1C8S6	307	NUDT7 "Uncharacterized protein	0.621	0.557	0.386	6.1e-23
TIGR_CMR|GSU_3375	193	GSU_3375 "mutT/nudix family pr	0.701	1.0	0.334	1.3e-22
TIGR_CMR|SPO_0025	190	SPO_0025 "hydrolase, NUDIX fam	0.585	0.847	0.370	5.5e-22
TIGR_CMR|CPS_3615	191	CPS_3615 "MutT/nudix family pr	0.56	0.806	0.366	1.2e-19
MGI|MGI:1914778	236	Nudt7 "nudix (nucleoside dipho	0.618	0.720	0.32	1.5e-19
TIGR_CMR|SO_2220	195	SO_2220 "MutT/nudix family pro	0.556	0.784	0.375	6.5e-19
UNIPROTKB|G1RS58	238	NUDT7 "Uncharacterized protein	0.618	0.714	0.314	8.3e-19

TAIR|locus:2055420 NUDT22 "nudix hydrolase homolog 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 155/238 (65%), Positives = 182/238 (76%)

Query:    38 YKPP--PPFDEMEEQ-QIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGD 94
             YKPP    FDE EE    +E+  K ++ VGFQES+ P+     RFRPKKAAVLICLFEGD
Sbjct:    32 YKPPLSSSFDEREELLAYKESTRKSITHVGFQESMAPV-----RFRPKKAAVLICLFEGD 86

Query:    95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGXXXXXXXXXXX 154
              GDLRVILTKRSS +STHSGE+SLPGGKAEE D+DDG TATREA+EEIG           
Sbjct:    87 DGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIGLDPSLVDVVAF 146

Query:   155 XXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMG 214
                FLS+HLLRV+PV+GIL ++KAF PTPNPAEVE V DAP EMF+KDENRR EE +WMG
Sbjct:   147 LEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDENRRSEEFDWMG 206

Query:   215 EKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFPTVINKDT 272
             EK L+HFFDY+  +  Y+IWGLTA ILIRAA+VVYQ+PPAFIEQ P  K+ + +N+ T
Sbjct:   207 EKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPNLKY-SKMNQAT 263

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2152415 NUDT11 "nudix hydrolase homolog 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 103/191 (53%), Positives = 134/191 (70%)

Query:    77 ERFRPKKAAVLICLFEG---DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
             + F  K +AVL+CL++    D  +LRVILTKRS+ +S+H GE++LPGGK ++ D+DD  T
Sbjct:    27 QHFPAKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIAT 86

Query:   134 ATREAKEEIGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFD 193
             A REA+EEIG              F++K  + V PVIG L +KKAF   PNPAEVEE+FD
Sbjct:    87 ALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFD 146

Query:   194 APLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK--YLIWGLTAGILIRAASVVYQK 251
              PLEMF+KD NRR EERE  GE++LL +FDY  E+K+  ++IW LTAGILIR AS+VYQ+
Sbjct:   147 VPLEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQR 206

Query:   252 PPAFIEQNPKF 262
              P F E+ P F
Sbjct:   207 LPEFQERKPSF 217

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA;RCA

GO:0000210 "NAD+ diphosphatase activity" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0010945 "CoA pyrophosphatase activity" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IDA

GO:2001294 "malonyl-CoA catabolic process" evidence=IDA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

UNIPROTKB|H9KZB9 H9KZB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 68/176 (38%), Positives = 96/176 (54%)

Query:    82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
             +KA+VL+ L   D G L ++LT RS ++    GE+  PGGK EE D+D+ DTA REAKEE
Sbjct:   103 RKASVLLPLLLRD-GALCLLLTVRSMQLRRSPGEVCFPGGKREEMDKDEIDTALREAKEE 161

Query:   142 IGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
             +G               + K    V PV+G + +   F  +PNP EV +VF  PLE F+K
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   202 DENRRDEEREWMGEKFLLHFFDYE-YENKK-YLIWGLTAGILIRAASVVYQKPPAF 255
               N      +  G    +H F Y+ +E+KK + IWGLTA   +  A V+++  P F
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTF 275

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

UNIPROTKB|E1C8S6 NUDT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 68/176 (38%), Positives = 96/176 (54%)

Query:    82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
             +KA+VL+ L   D G L ++LT RS ++    GE+  PGGK EE D+D+ DTA REAKEE
Sbjct:   103 RKASVLLPLLLRD-GALCLLLTVRSMQLRRSPGEVCFPGGKREEIDKDEIDTALREAKEE 161

Query:   142 IGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
             +G               + K    V PV+G + +   F  +PNP EV +VF  PLE F+K
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   202 DENRRDEEREWMGEKFLLHFFDYE-YENKK-YLIWGLTAGILIRAASVVYQKPPAF 255
               N      +  G    +H F Y+ +E+KK + IWGLTA   +  A V+++  P F
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTF 275

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

TIGR_CMR|GSU_3375 GSU_3375 "mutT/nudix family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 69/206 (33%), Positives = 103/206 (50%)

Query:    47 MEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRS 106
             M+   I E AG++ + +  +  V P+   P    P  AAVL+ LFE D G++ V+ TKR+
Sbjct:     1 MDVPGITELAGRICTTLAGRTRV-PMAPGPI---P--AAVLLPLFERD-GEVHVLFTKRT 53

Query:   107 SRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGXXXXXXXXXXXXXXFLSKHLLRV 166
               ++ H GEIS PGG +   D    +TA RE  EEIG              F S H   V
Sbjct:    54 EHLNHHRGEISFPGGVSHPDDASPCETALRETWEEIGIPPGEVDILGELDDFYSVHDYLV 113

Query:   167 VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEY 226
              P +G++   +      NP E+E +   PL+  ++ E  R E+  W G    +HF  Y Y
Sbjct:   114 TPCVGVIRGDRPLVV--NPGEIERIIVVPLKHLLRPEAFRTEDWTWRGRTHPVHF--YRY 169

Query:   227 ENKKYLIWGLTAGILIRAASVVYQKP 252
              + +  IWGLTA IL +  + ++ +P
Sbjct:   170 MDDE--IWGLTAAILSQFLNTIFPRP 193

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|SPO_0025 SPO_0025 "hydrolase, NUDIX family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 63/170 (37%), Positives = 85/170 (50%)

Query:    72 IIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDG 131
             I+ +  R RP    V + L  G     RVILTKRSS +  H G+I+ PGGK +EGD D  
Sbjct:    21 ILPEGRRLRPAGVLVPVTLAHGAP---RVILTKRSSALKHHPGQIAFPGGKQDEGDADVI 77

Query:   132 DTATREAKEEIGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEV 191
               A REA+EEIG                +     V PV+ ++  ++ F   P P EVEEV
Sbjct:    78 AAALREAEEEIGLTRTLPQVLGTLPAHETVTAFTVTPVVAVV--ERTFDVRPEPGEVEEV 135

Query:   192 FDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
             F  PL   ++ EN   + R W G++   H+F   +    Y IWG TA +L
Sbjct:   136 FSVPLAHLMRPENYSVQSRRWRGQR--RHYFTVPFG--PYYIWGATARML 181

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CPS_3615 CPS_3615 "MutT/nudix family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 59/161 (36%), Positives = 86/161 (53%)

Query:    82 KKAAVLICLFEGDAGD-LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKE 140
             + AAVLI L E D+G+ L+V+LTKR+S +  H  ++S PGGK E  D+   DTA REA E
Sbjct:    29 RSAAVLIALVESDSGEGLQVLLTKRASHLKHHPSQVSFPGGKVEREDKSLIDTALREAFE 88

Query:   141 EIGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200
             EIG              + +    +V P+I I+++ + +    N  EV EVF  PL+ F+
Sbjct:    89 EIGLSREAVTVAGQLPPYETISGFQVTPIIAIVASSQIYQIDTN--EVTEVFQVPLQHFL 146

Query:   201 KDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
                +         G++  +HF  Y    K+Y IWG TA +L
Sbjct:   147 TTTDHHVFVAHKGGKQHNVHFLPY----KEYNIWGATAVML 183

GO:0008152 "metabolic process" evidence=ISS

MGI|MGI:1914778 Nudt7 "nudix (nucleoside diphosphate linked moiety X)-type motif 7" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 56/175 (32%), Positives = 89/175 (50%)

Query:    83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI 142
             K +VL+ L     G L ++ T RS ++    GE+  PGGK +  D DD  TA REA+EE+
Sbjct:    39 KFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTATALREAQEEV 97

Query:   143 GXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202
             G              ++  +   V PV+G L +   F   PN  EV+EVF  PL+ F+  
Sbjct:    98 GLHPHQVEVVSHLVPYVFDNDALVTPVVGFLDHN--FQAQPNADEVKEVFFVPLDYFLHP 155

Query:   203 ENRRDEEREWMGEKFLLHFFDYEYENK--KYLIWGLTAGILIRAASVVYQKPPAF 255
             +    ++    G  F++H F+Y+       YLI G+T+ + +  A ++ ++ PAF
Sbjct:   156 QVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAF 210

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003986 "acetyl-CoA hydrolase activity" evidence=IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0015938 "coenzyme A catabolic process" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046356 "acetyl-CoA catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0050873 "brown fat cell differentiation" evidence=IDA

TIGR_CMR|SO_2220 SO_2220 "MutT/nudix family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 60/160 (37%), Positives = 81/160 (50%)

Query:    82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
             +KAAVLI L E D G+L +ILT+R   +  H G+IS PGGK E  D      A REA+EE
Sbjct:    29 RKAAVLIPLQEID-GELNLILTQRPMHLRAHPGQISFPGGKIEASDPSAIMAALREAEEE 87

Query:   142 IGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
             IG                +     + PV+GI+  K+ FT   +P EV + F  PL  FI+
Sbjct:    88 IGLCRENVDVIGTFPAHNTFTGFEITPVVGII--KQDFTLRLDPGEVADCFTVPLSFFIE 145

Query:   202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
               +R  +E    G  + +HF  Y+       IWG TA I+
Sbjct:   146 PRHRHRKEFLRKGRYYSVHFIPYQQR----FIWGATAAII 181

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|G1RS58 NUDT7 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 55/175 (31%), Positives = 86/175 (49%)

Query:    83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI 142
             K +VL+ L   + G L ++ T RS ++    GE+  PGGK +  D DD  TA REA+EE+
Sbjct:    39 KYSVLLPLVAKE-GKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEV 97

Query:   143 GXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202
             G               L      + P +G++ +   F   PNPAEV++VF  PL  F+  
Sbjct:    98 GLHPHQVEVVCCLMPCLIDTDTMITPFVGLIDHN--FQAQPNPAEVKDVFLVPLAYFLHP 155

Query:   203 ENRRDEEREWMGEKFLLHFFDYEY--ENKKYLIWGLTAGILIRAASVVYQKPPAF 255
             +         +G +F+ H F+Y    +   Y I G+TA + +  A ++ +K P F
Sbjct:   156 QVHDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTF 210

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0015938 "coenzyme A catabolic process" evidence=ISS

GO:0046356 "acetyl-CoA catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYB1	NUD15_ARATH	3, ., 6, ., 1, ., -	0.7745	0.8763	0.8456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0238 hypothetical protein (257 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PLN02709	222	PLN02709, PLN02709, nudix hydrolase	9e-75
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	6e-62
PRK10707	190	PRK10707, PRK10707, putative NUDIX hydrolase; Prov	2e-25
pfam00293	133	pfam00293, NUDIX, NUDIX domain	7e-11
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	6e-07
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	1e-06
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	4e-05
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	1e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	2e-04
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	6e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	0.002
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	0.004

>gnl|CDD|178311 PLN02709, PLN02709, nudix hydrolase

 Score =  227 bits (579), Expect = 9e-75
 Identities = 114/191 (59%), Positives = 149/191 (78%), Gaps = 5/191 (2%)

Query: 77  ERFRPKKAAVLICLFEG---DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
           + F  K +AVL+CL++    D  +LRVILTKRSS +S+H GE++LPGGK +E D+DD  T
Sbjct: 27  QHFPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIAT 86

Query: 134 ATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFD 193
           A REA+EEIGLDP LV +++VLEPF++K  + V PVIG L +KKAF P PNPAEVEE+FD
Sbjct: 87  ALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFD 146

Query: 194 APLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK--YLIWGLTAGILIRAASVVYQK 251
            PLEMF+KD+N+R EERE  GE++LL +FDY  E+K+  ++IW LTAGILIR AS+VYQ+
Sbjct: 147 VPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIWALTAGILIRVASIVYQR 206

Query: 252 PPAFIEQNPKF 262
            P F E+ P+F
Sbjct: 207 LPEFQERKPRF 217

Length = 222

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score =  191 bits (489), Expect = 6e-62
 Identities = 68/161 (42%), Positives = 92/161 (57%), Gaps = 6/161 (3%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++AAVL+ L E + G+LRV+LTKR+S + +H G+++ PGGK + GD D   TA REA+EE
Sbjct: 1   RRAAVLVLLVERE-GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEE 59

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           IGL P  VEV+  L P+ ++    V PV+G++          NP EV EVF+ PL   + 
Sbjct: 60  IGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLD 117

Query: 202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILI 242
             N R   R   G       F    E   Y+IWGLTA IL 
Sbjct: 118 PANPRTTRRHGRGG-LTFPAFALPGEG--YVIWGLTARILS 155

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional

 Score = 99.3 bits (248), Expect = 2e-25
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 24/172 (13%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++AAVLI +       L  +LT+RS  +  H+G+++ PGG  +  D     TA REA+EE
Sbjct: 30  RQAAVLIPIVRRPQPTL--LLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEE 87

Query: 142 IGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           + + P  VEV+ VL P  S    +V PV+GI+     +    N  EV  VF+ PL   + 
Sbjct: 88  VAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPDLPY--RANEDEVAAVFEMPLAEALH 145

Query: 202 -------DENRR-DEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAA 245
                  D  RR    R W+            YE   Y +WG+TAGI+   A
Sbjct: 146 LGRYHPLDIYRRGQSHRVWL----------SWYEQ--YFVWGMTAGIIRELA 185

Length = 190

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++ AV + L   D     V+L +RS R     G   LPGGK E G+    + A RE +EE
Sbjct: 1   RRRAVGVVLLNEDG---EVLLVRRS-RPPVFPGLWELPGGKVEPGE-SPEEAAVRELEEE 55

Query: 142 IGLDPLLVEVVTVLE-PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200
            GL  LL+ ++ VLE P   +     V V           P PN  EV EV   PLE  +
Sbjct: 56  TGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELL 115

Query: 201 KD 202
           + 
Sbjct: 116 EL 117

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 96  GDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD---PLLVEVV 152
            D RV+L +R+       G   LPGG  E G+  + + A RE +EE GLD     L+ V 
Sbjct: 10  EDGRVLLVRRADS---PGGLWELPGGGVEPGETLE-EAAIREVREETGLDVDVLRLLGVY 65

Query: 153 TVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVE 189
            V  P   +H +  V +  ++  +    P    +EV 
Sbjct: 66  EVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVR 102

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 77  ERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATR 136
           +R     A  ++    G  G   V+L +R        G   LPGGK E G+    + A R
Sbjct: 6   QRKVRDVAVAVLV---GRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAAR 58

Query: 137 EAKEEIGLDP--LLVEVVTVLEPFLS-----KHLLRVVPVIGILSNKKAFTPTPNPAEVE 189
           E +EE GL      +E++    P              V  +  + +  A       A  E
Sbjct: 59  ELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSE 118

Query: 190 EVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK 230
           E+ D       +       E +   +             K+
Sbjct: 119 ELEDLEWVPLDELAALVLAEDQVKRDAKKALLLLLFLALKR 159

Length = 161

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE 156
           R++L +R++     +G  +LPGG  E G+  + + A RE KEE GL   ++E++ V +
Sbjct: 22  RILLVRRAN--EPGAGYWALPGGFVEIGETLE-EAARRELKEETGLRVRVLELLAVFD 76

Length = 145

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTV 154
           +V+L KR    S  +G  +LPGG  E G+    + A RE  EE GL    V+ +TV
Sbjct: 15  KVLLGKRKG--SHGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 97  DLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL 147
           D +V+L +RS   +   G++++PGG  E G+  + +   RE +EE+G+DPL
Sbjct: 10  DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQE-EALLREVQEELGVDPL 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
           AV   +F G     RV+L +R++     +G  S PGGK E G+  +   A RE  EE GL
Sbjct: 2   AVGAVVFRGG----RVLLVRRANPPD--AGLWSFPGGKVELGETLE-QAALRELLEETGL 54

Query: 145 DPLLVEVVTVLEPFLSKHLLRV 166
           +  +  ++TV++        RV
Sbjct: 55  EAEVGRLLTVVDVIERDAAGRV 76

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 85  AVLICLFEGDAGDLRVILTKRSS--RMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI 142
           AV + L   D     V+L +R++   M    G+ +LP G  E+G+ D    A REA+EEI
Sbjct: 2   AVYVLLRRDDE----VLLQRRANTGYMD---GQWALPAGHLEKGE-DAVTAAVREAREEI 53

Query: 143 GLD 145
           G+ 
Sbjct: 54  GVT 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 8/52 (15%)

Query: 94  DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD 145
           D G  RV+L +RS      +G  +LPGG  E G+    DTA RE +EE GLD
Sbjct: 12  DEG--RVLLIRRSD-----NGLWALPGGAVEPGESPA-DTAVREVREETGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PLN02709	222	nudix hydrolase	100.0
PRK10707	190	putative NUDIX hydrolase; Provisional	100.0
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	100.0
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.97
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.8
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.79
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.78
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.77
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.77
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.77
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.75
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.75
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.74
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.74
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.73
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.73
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.73
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.73
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.73
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.73
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.73
PLN02325	144	nudix hydrolase	99.73
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.73
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.72
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.72
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.72
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.72
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.72
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.72
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.71
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.71
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.7
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.7
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.7
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.69
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.69
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.69
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.69
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.68
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.68
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.67
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.67
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.67
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.67
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.67
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.67
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.66
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.66
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.65
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.65
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.65
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.64
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.64
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.64
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.63
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.63
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.62
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.62
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.62
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.6
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.59
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.59
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.59
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.59
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.58
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.58
PLN02791	770	Nudix hydrolase homolog	99.57
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.57
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.53
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.52
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.52
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.51
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.49
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.47
PRK08999	312	hypothetical protein; Provisional	99.43
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.42
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.4
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.4
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.38
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.37
PLN03143	291	nudix hydrolase; Provisional	99.35
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.3
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.24
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.21
PLN02839	372	nudix hydrolase	99.17
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.17
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.01
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.96
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.93
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.64
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	98.17
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.13
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.89
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	97.86
KOG4195	275	consensus Transient receptor potential-related cha	97.57
PRK10880	350	adenine DNA glycosylase; Provisional	96.98
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	96.17
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.06
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	94.81
PRK13910	289	DNA glycosylase MutY; Provisional	89.64
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	89.18
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	88.2
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	87.68
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	87.06
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	84.19
PF14443	126	DBC1: DBC1	81.6

>PLN02709 nudix hydrolase

Probab=100.00  E-value=5.5e-42  Score=303.10  Aligned_cols=186  Identities=60%  Similarity=1.030  Sum_probs=163.1

Q ss_pred             CCCeEEEEEEEEeec---CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911           80 RPKKAAVLICLFEGD---AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE  156 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~---~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~  156 (275)
                      ..++|||+|+|+..+   +++++|||++|+.++++|+|+||||||++|++|+++.+||+||++||+||+++.++++|.++
T Consensus        30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~  109 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE  109 (222)
T ss_pred             CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence            458999999998742   35789999999999999999999999999999878999999999999999999999999999


Q ss_pred             ccccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeec--CCceeEE
Q 023911          157 PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYE--NKKYLIW  234 (275)
Q Consensus       157 ~~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~--~~~~~IW  234 (275)
                      .+.+..++.|+|||+.+.....+.+.+|++||+++||+||++|+++++++...+.|.|..+.+|+|.|..+  .+++.||
T Consensus       110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW  189 (222)
T PLN02709        110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW  189 (222)
T ss_pred             CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence            98888899999999999754445556899999999999999999999988777788898889999988321  2468999


Q ss_pred             chhHHHHHHHHHHHhCCCCCccccCCCCCCC
Q 023911          235 GLTAGILIRAASVVYQKPPAFIEQNPKFKFP  265 (275)
Q Consensus       235 GlTa~iL~~~~~~~~~~~p~f~e~~~~~~~~  265 (275)
                      |+||+||.+++.+++++.|+|....+.++.+
T Consensus       190 G~TA~IL~~l~~~~~~~~~~~~~~~~~~~~~  220 (222)
T PLN02709        190 ALTAGILIRVASIVYQRLPEFQERKPRFWNQ  220 (222)
T ss_pred             cHHHHHHHHHHHHHhccCCCccccccccccC
Confidence            9999999999999999999996555555543

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=100.00  E-value=2.2e-34  Score=250.53  Aligned_cols=161  Identities=32%  Similarity=0.501  Sum_probs=140.9

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      ..+.|||++++.+++  +..|||++|+...+.|+|+|+||||++|++|+++.+||+||++||||+++..+++++.+.+..
T Consensus        28 ~~~~aavvl~l~~~~--~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~  105 (190)
T PRK10707         28 NQRQAAVLIPIVRRP--QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVD  105 (190)
T ss_pred             cCCCeEEEEEEEECC--CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeee
Confidence            456789999887633  349999999999989999999999999998768999999999999999999999999998877


Q ss_pred             cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHH
Q 023911          160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAG  239 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~  239 (275)
                      +..++.++++++.+....  ...+|++|+.+++|+|++++.+..++....+.+.|..+.+++|.|    +++.|||+||+
T Consensus       106 ~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~  179 (190)
T PRK10707        106 SSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAG  179 (190)
T ss_pred             ccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHH
Confidence            777889999999987543  346789999999999999999998887777778888888999987    47999999999


Q ss_pred             HHHHHHHHH
Q 023911          240 ILIRAASVV  248 (275)
Q Consensus       240 iL~~~~~~~  248 (275)
                      ||.+++..+
T Consensus       180 il~~~~~~~  188 (190)
T PRK10707        180 IIRELALQI  188 (190)
T ss_pred             HHHHHHHHh
Confidence            999998764

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=100.00  E-value=5.3e-35  Score=256.27  Aligned_cols=222  Identities=32%  Similarity=0.464  Sum_probs=167.9

Q ss_pred             HHHHhccccCCCCCC-chhHHHHHHhhhcccccccCcccccCCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEEEeCCC
Q 023911           30 ALAQQLRLYKPPPPF-DEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSR  108 (275)
Q Consensus        30 ~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~  108 (275)
                      .|+|+..+|+|+... .+...+..   +-..+          ..++.......+.+||+|+|++.++|+++||||||+.+
T Consensus         2 ~l~~~~~~s~p~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~   68 (246)
T KOG3069|consen    2 SLAQLQLLSSPCLVSTSNDPKRLL---GPATI----------ISKSETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRT   68 (246)
T ss_pred             chhhHHHhcCCCccccccchhhhc---Chhhh----------hhhcccccCCCCCccEEEEEEEcCCCceEEEEEecccc
Confidence            478888899988654 22222111   10000          00111222356889999999997678899999999999


Q ss_pred             CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC-CCCCCChhh
Q 023911          109 MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA-FTPTPNPAE  187 (275)
Q Consensus       109 l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~-~~~~~~~~E  187 (275)
                      +++|+|++|||||++|+.|.+..+||+||++||+|++++.++++|.++++....+..|.|+|+++.+..- ....+|++|
T Consensus        69 LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gE  148 (246)
T KOG3069|consen   69 LRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGE  148 (246)
T ss_pred             ccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccccccccCCchh
Confidence            9999999999999999999999999999999999999999999999999988888899999999987532 346889999


Q ss_pred             hhcceecChhhhhccCCCcceeeeEeceeEEEEEEEe--eecCCceeEEchhHHHHHHHHHHHhCCCCCccccCCCCCC
Q 023911          188 VEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDY--EYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKF  264 (275)
Q Consensus       188 V~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~--~~~~~~~~IWGlTa~iL~~~~~~~~~~~p~f~e~~~~~~~  264 (275)
                      |.++|||||++|+.+...+..+....+......+++|  .+....+.+||+|+.||.++..++++..+.+....++|..
T Consensus       149 v~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~iT~~Il~~~~~~l~~~l~~~~~~~~~h~l  227 (246)
T KOG3069|consen  149 VESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGITHGILGDLPNFLSPSLLTSLPYFQKHDL  227 (246)
T ss_pred             eeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHHHHHHHhcchhhcCchhhhcccccccccc
Confidence            9999999999999998776433222222221212222  1233467899999999999999999988877665566554

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.97  E-value=1.3e-30  Score=219.78  Aligned_cols=156  Identities=42%  Similarity=0.711  Sum_probs=126.3

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCC-CCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEG-DRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~g-E~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      |++||+|++++. +++.+|||++|+..+..++|.|+||||++|+| | ++.+||+||++||||++...+..++.+.....
T Consensus         1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~   78 (157)
T cd03426           1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT   78 (157)
T ss_pred             CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence            578999998874 44569999999988778999999999999999 7 99999999999999999999999998876666


Q ss_pred             CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHHH
Q 023911          161 KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGI  240 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~i  240 (275)
                      ..+..+++|++.+...  ..+.++++|+.++.|+|++++.+..+.......+.+ ....+++.|+.  .+++|||+||||
T Consensus        79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i  153 (157)
T cd03426          79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI  153 (157)
T ss_pred             cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence            5677788888887653  234678899999999999999998776544444544 12345555542  468999999999


Q ss_pred             HHHH
Q 023911          241 LIRA  244 (275)
Q Consensus       241 L~~~  244 (275)
                      |.++
T Consensus       154 ~~~~  157 (157)
T cd03426         154 LSEL  157 (157)
T ss_pred             HhhC
Confidence            9874

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=8.9e-19  Score=145.02  Aligned_cols=119  Identities=22%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEEecccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTVLEPFL  159 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~~~  159 (275)
                      +.||.+.|++.++|+.+||+++|+..+..+||.|++ |||++|+|| ++.+||+||++|||||..  ..+..++.+....
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~   80 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY   80 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence            467888888865555699999999988889999999 599999999 999999999999999975  3566677665433


Q ss_pred             c-C----CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          160 S-K----HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~-~----~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      . .    .....+.|++..... ...+.++++|+.++.|+|++++.+.-
T Consensus        81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHH
Confidence            2 1    112335556655431 11235678999999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.7e-18  Score=140.22  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=84.9

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      ||.+++++ .+|  +|||++|+.....++|.|++ |||++++|| ++.+||+||++|||||+...+..++.+........
T Consensus         2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~   77 (126)
T cd04697           2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR   77 (126)
T ss_pred             eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence            56666776 356  89999999887788999999 699999999 99999999999999999887777777644332223


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...+.|.+....    ...++++|+.++.|++++++.+.
T Consensus        78 ~~~~~f~~~~~~----~~~~~~~E~~~~~w~~~~el~~~  112 (126)
T cd04697          78 VWGKVFSCVYDG----PLKLQEEEVEEITWLSINEILQF  112 (126)
T ss_pred             EEEEEEEEEECC----CCCCCHhHhhheEEcCHHHHHHH
Confidence            333445554432    23467889999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=4.7e-18  Score=136.04  Aligned_cols=97  Identities=25%  Similarity=0.350  Sum_probs=75.9

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|+.+...++|.|+||||++|+|| ++.+||+||++||||++...+..++.+..... ....++.|.+.....  
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~--   87 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQG--   87 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEecC--
Confidence            89999998776678999999999999999 99999999999999999777777766654332 334455566554321  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         .++.+|+.++.|+|++++...
T Consensus        88 ---~~~~~E~~~~~W~~~~~l~~~  108 (117)
T cd04691          88 ---EIPAQEAAEVHWMTANDIVLA  108 (117)
T ss_pred             ---CCCcccccccEEcCHHHcchh
Confidence               123489999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.4e-18  Score=136.67  Aligned_cols=102  Identities=23%  Similarity=0.245  Sum_probs=76.5

Q ss_pred             EEEEEEeCCC-CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEE--EEEecccccCCceEEEEEEEEEcC
Q 023911           99 RVILTKRSSR-MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEV--VTVLEPFLSKHLLRVVPVIGILSN  175 (275)
Q Consensus        99 ~VLL~rRs~~-l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~--lg~l~~~~~~~~~~V~p~v~~l~~  175 (275)
                      +|||++|+.. ...++|.|+||||++|.|| ++.+||+||++||||++.....+  ...+.  ........+.|++....
T Consensus        13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~   89 (122)
T cd04682          13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYP--SASPPGTEHVFVVPLTA   89 (122)
T ss_pred             EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEecc--cCCCCceEEEEEEEEec
Confidence            8999999987 5678999999999999999 99999999999999998753322  22222  11223345566665543


Q ss_pred             CCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          176 KKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       176 ~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      ..  ....+.+|+.++.|++++++.+..+.
T Consensus        90 ~~--~~~~~~~E~~~~~W~~~~el~~~~~~  117 (122)
T cd04682          90 RE--DAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             CC--CccccCchhheeecccHHHHhhcccc
Confidence            22  23467899999999999999887653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6.2e-18  Score=136.07  Aligned_cols=111  Identities=19%  Similarity=0.266  Sum_probs=81.6

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--  161 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--  161 (275)
                      .+|.+++++ .+|  +|||++|+..  ..+|.|+||||++|+|| ++.+||+||++||||+.....++++........  
T Consensus         3 ~~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   76 (125)
T cd04679           3 VGCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPP   76 (125)
T ss_pred             eEEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCCC
Confidence            345555565 345  8999999753  35799999999999999 999999999999999999888888877655432  


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .......|++.......  ...+++|+.++.|++++++.+.
T Consensus        77 ~~~~~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~~l~~~  115 (125)
T cd04679          77 QHWVAPVYLAENFSGEP--RLMEPDKLLELGWFALDALPQP  115 (125)
T ss_pred             CeEEEEEEEEeecCCcc--ccCCCccccEEEEeCHHHCCch
Confidence            22233445555543221  1246679999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5.5e-18  Score=136.95  Aligned_cols=108  Identities=20%  Similarity=0.293  Sum_probs=82.7

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      +||.+++++. +|  +|||++|+..  .++|.|+||||++|.|| ++.+||+||++||||++...+..++.+.......+
T Consensus         2 ~av~~~i~~~-~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   75 (130)
T cd04681           2 AAVGVLILNE-DG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG   75 (130)
T ss_pred             ceEEEEEEcC-CC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence            6788878773 45  8999999864  35899999999999999 99999999999999999988888887654332222


Q ss_pred             eE----EEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911          164 LR----VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       164 ~~----V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      ..    ...|++.+...   ....+.+|+.++.|+|++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence            21    12455665432   224567899999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.1e-17  Score=135.22  Aligned_cols=110  Identities=23%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSK  161 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~  161 (275)
                      +|.+++++ ++|  +|||++|+..+..++|.|+|| ||++|.|| ++ +||+||++||||+++.  .+..++.+..... 
T Consensus         2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-   75 (127)
T cd04693           2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEAE-   75 (127)
T ss_pred             eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-
Confidence            46666776 355  899999998877889999998 99999999 99 9999999999999865  3334444322111 


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....++.|.+...   .....++++|+.++.|++++++.+.-
T Consensus        76 ~~~~~~~~~~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04693          76 GFDDYYLFYADVE---IGKLILQKEEVDEVKFVSKDEIDGLI  114 (127)
T ss_pred             CeEEEEEEEecCc---ccccccCHHHhhhEEEeCHHHHHHHH
Confidence            1111222222211   12335678899999999999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.75  E-value=1.4e-17  Score=135.84  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++. ++  ++||++|.... ..++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus         3 ~~v~v~~~~~-~~--~iLl~~~~~~~-~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   77 (137)
T cd03424           3 DAVAVLPYDD-DG--KVVLVRQYRPP-VGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD   77 (137)
T ss_pred             CEEEEEEEcC-CC--eEEEEEeeecC-CCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence            4556656663 45  89998875432 35789999999999999 99999999999999999988887777654333334


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ..++.|++....... ...++++|+.++.|++++++.+.-
T Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          78 ERIHLFLAEDLSPGE-EGLLDEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             ccEEEEEEEcccccc-cCCCCCCCeeEEEEecHHHHHHHH
Confidence            457777777665321 135678899999999999998654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=4.4e-17  Score=135.76  Aligned_cols=115  Identities=23%  Similarity=0.268  Sum_probs=82.5

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce----EEEEEecccc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV----EVVTVLEPFL  159 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~----~~lg~l~~~~  159 (275)
                      ++|.|++++ .++  +|||+||+..+..++|.|+||||+++++| ++.+||+||+.||+|+.+...    ++++.....+
T Consensus         2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~   77 (143)
T cd04694           2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY   77 (143)
T ss_pred             cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence            456666666 345  89999999887789999999999999999 999999999999999987653    5666543322


Q ss_pred             c----C--C-ceEEEEEEEEEcCC----CCCCCCCChhhhhcceecChhhhhcc
Q 023911          160 S----K--H-LLRVVPVIGILSNK----KAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ~----~--~-~~~V~p~v~~l~~~----~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .    .  . ...+..|+......    ....+.++++|++++.|++++++...
T Consensus        78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence            1    0  1 12334443332211    11234567899999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=5.8e-17  Score=130.75  Aligned_cols=112  Identities=24%  Similarity=0.278  Sum_probs=78.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++. ++  +|||++|...   ++|.|+||||++|.|| |+.+||+||++||||+.......++..........
T Consensus         3 ~~~~~~v~~~-~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   75 (127)
T cd04670           3 VGVGGLVLNE-KN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG   75 (127)
T ss_pred             eEEEEEEEcC-CC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence            3455555553 45  8999987653   7899999999999999 99999999999999999877666654332211122


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .....|++.+... ......+++|+.++.|++++++.+..
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence            2223344544321 22345678899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.73  E-value=2.3e-17  Score=134.83  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=82.5

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~  164 (275)
                      +|+++++++ ++  +|||++|...   .+|.|+||||+++.|| ++.+||+||++|||||+...+..++.......  ..
T Consensus         2 ~v~i~l~~~-~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~   72 (131)
T cd03429           2 AVIVLVIDG-GD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS   72 (131)
T ss_pred             eEEEEEEeC-CC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence            567767663 34  8999999753   3789999999999999 99999999999999999988888876533222  33


Q ss_pred             EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+..|++.....   ....+++|+.++.|+|++++.+.
T Consensus        73 ~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          73 LMLGFTAEADSG---EIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEEEEEcCC---cccCCchhhhccEeecHHHHhhc
Confidence            455677776542   33567789999999999999876

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.5e-17  Score=129.34  Aligned_cols=110  Identities=25%  Similarity=0.310  Sum_probs=77.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccCC
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSKH  162 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~~  162 (275)
                      ||.+++.+  +|  +|||++|... +.++|.|+||||++|+|| ++.+||+||++|||||...  .+.+++.+.......
T Consensus         2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~   75 (120)
T cd04683           2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI   75 (120)
T ss_pred             cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence            45565555  35  8999999854 345899999999999999 9999999999999999876  566777665443321


Q ss_pred             ceEE-EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          163 LLRV-VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       163 ~~~V-~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...+ ..|.+......  ....+++|+.++.|+|++++...
T Consensus        76 ~~~~~~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~~  114 (120)
T cd04683          76 ESRIGLFFTVRRWSGE--PRNCEPDKCAELRWFPLDALPDD  114 (120)
T ss_pred             ceEEEEEEEEEeecCc--cccCCCCcEeeEEEEchHHCcch
Confidence            2222 33334332211  11245689999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=6.5e-17  Score=134.41  Aligned_cols=112  Identities=26%  Similarity=0.349  Sum_probs=81.6

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL----  159 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~----  159 (275)
                      .+|.+++++ .+|  +|||++|+...    |.|+||||++|+|| ++.+||+||++||||+.+....+++......    
T Consensus         4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~   75 (147)
T cd03671           4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL   75 (147)
T ss_pred             ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence            345555555 345  89999998743    89999999999999 9999999999999999988888887753211    


Q ss_pred             c-----------CCceEEEEEEEEEcCC-CCCCCCC-ChhhhhcceecChhhhhccC
Q 023911          160 S-----------KHLLRVVPVIGILSNK-KAFTPTP-NPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~-----------~~~~~V~p~v~~l~~~-~~~~~~~-~~~EV~~v~wvpl~ell~~~  203 (275)
                      .           ..+..++.|++.+... ....... +++|+.++.|+|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~  132 (147)
T cd03671          76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI  132 (147)
T ss_pred             hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence            0           1133466777766541 2222233 25799999999999998754

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=7.6e-17  Score=130.26  Aligned_cols=115  Identities=24%  Similarity=0.281  Sum_probs=84.2

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      +.+|.++|++. +|  +|||++|...  ..+|.|.+|||+++.|| ++.+||+||++||||+++.....++.........
T Consensus         2 ~~~v~~ii~~~-~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~   75 (129)
T cd04678           2 RVGVGVFVLNP-KG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEE   75 (129)
T ss_pred             ceEEEEEEECC-CC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC
Confidence            34666667763 45  8999999863  46899999999999999 9999999999999999988888877665443222


Q ss_pred             --ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 --LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 --~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                        ......|.+............+++|+.++.|++++++.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  118 (129)
T cd04678          76 GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD  118 (129)
T ss_pred             CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence              23334455555442211111367889999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=4e-17  Score=131.19  Aligned_cols=111  Identities=26%  Similarity=0.289  Sum_probs=80.0

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc---
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS---  160 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~---  160 (275)
                      +|.+|++.. .+++.+|||++|...     |.|+||||++++|| |+.+||+||++||||+....+..++.+.....   
T Consensus         3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   75 (131)
T cd03673           3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG   75 (131)
T ss_pred             eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence            444443333 344469999999752     88999999999999 99999999999999999888887777654332   


Q ss_pred             -CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 -KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 -~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                       .....++.|++..... .... .+.+|+.++.|+|++++.+.-
T Consensus        76 ~~~~~~~~~~~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~~  117 (131)
T cd03673          76 KRVHKTVHWWLMRALGG-EFTP-QPDEEVDEVRWLPPDEARDRL  117 (131)
T ss_pred             CCcceEEEEEEEEEcCC-Cccc-CCCCcEEEEEEcCHHHHHHHc
Confidence             2233455566655432 1111 256899999999999997654

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.73  E-value=6.5e-17  Score=133.13  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE-Eec-----ccc
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT-VLE-----PFL  159 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg-~l~-----~~~  159 (275)
                      |++.++.. +|  +|||+||+..++.++|.|++|||++|+|| |+.+||+||++|||||......+.. .+.     ..+
T Consensus         6 ~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (141)
T PRK15472          6 IVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTY   81 (141)
T ss_pred             EEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEEe
Confidence            33434443 45  89999999877789999999999999999 9999999999999999764332211 010     001


Q ss_pred             -cCCc-eEEEE-EEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          160 -SKHL-LRVVP-VIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 -~~~~-~~V~p-~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .... ..... ++...... .....++ +|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         82 ADGRKEEIYMIYLIFDCVSA-NRDVKIN-EEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             cCCCceeEEEEEEEEEeecC-CCcccCC-hhhheEEEccHHHhccc
Confidence             1111 11111 11222111 1122333 79999999999999764

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.73  E-value=2.6e-17  Score=139.63  Aligned_cols=113  Identities=25%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceEEE-EEeccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVEVV-TVLEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~l-g~l~~~~~  160 (275)
                      +.+|.+++++. +|  +|||+||+..+..+||.|++| ||++|+|| ++.+||+||++|||||.......+ +.+.....
T Consensus        30 ~~~v~v~i~~~-~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~  105 (165)
T cd02885          30 HRAFSVFLFNS-KG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRAP  105 (165)
T ss_pred             eeEEEEEEEcC-CC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEEE
Confidence            78888877773 55  899999998877899999996 89999999 999999999999999998766664 33322111


Q ss_pred             --C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 --K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 --~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                        .   .....+.|.+....    ...++++|+.++.|+|++++.+.-
T Consensus       106 ~~~~~~~~~i~~~f~~~~~~----~~~~~~~Ev~~~~w~~~~el~~~~  149 (165)
T cd02885         106 DDGGLVEHEIDHVFFARADV----TLIPNPDEVSEYRWVSLEDLKELV  149 (165)
T ss_pred             cCCCceeeEEEEEEEEEeCC----CCCCCccceeEEEEECHHHHHHHH
Confidence              1   11123334444332    223577899999999999998754

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PLN02325 nudix hydrolase

Probab=99.73  E-value=1.2e-16  Score=133.01  Aligned_cols=114  Identities=24%  Similarity=0.314  Sum_probs=82.5

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      .+.+|.+++++  +|  +|||++|+..  ...|.|++|||++|.|| |+.+||+||++||||+++...++++..+.....
T Consensus         8 p~~~v~~vi~~--~~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~   80 (144)
T PLN02325          8 PRVAVVVFLLK--GN--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLE   80 (144)
T ss_pred             CeEEEEEEEEc--CC--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence            34556665665  35  8999999864  34689999999999999 999999999999999999999988887654311


Q ss_pred             ----CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 ----HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 ----~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                          ..+....|.+...+........+++|+.++.|+++++|...
T Consensus        81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence                12233344455543222222356678889999999998754

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.3e-17  Score=131.31  Aligned_cols=109  Identities=25%  Similarity=0.288  Sum_probs=81.3

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecc--cc--cC
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEP--FL--SK  161 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~--~~--~~  161 (275)
                      |.|++++ ..++.+|||++|+..   ++|.|.+|||++|.|| ++.+||+||++|||||....+..+.....  +.  ..
T Consensus         4 ~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04664           4 VLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD   78 (129)
T ss_pred             EEEEEEE-eCCCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence            4444555 312338999999875   7999999999999999 99999999999999999877777776653  11  11


Q ss_pred             --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                        ....++.|++.+....   ....++|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~  118 (129)
T cd04664          79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL  118 (129)
T ss_pred             CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence              2345677777765432   1234579999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.6e-17  Score=139.32  Aligned_cols=122  Identities=24%  Similarity=0.288  Sum_probs=88.6

Q ss_pred             cCCCCeEEEEEEEEe-ecCCceEEEEEEeCCCCCCCCCcE-EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce---EEE
Q 023911           78 RFRPKKAAVLICLFE-GDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV---EVV  152 (275)
Q Consensus        78 ~~~~r~aAVlv~L~~-~~~g~~~VLL~rRs~~l~~~~G~w-sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~---~~l  152 (275)
                      ..+..+.||.|.++. +.+++.+|+++||+.++..+||.| .+|||++++|| ++.+||+||++|||||+...+   ..+
T Consensus        27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~  105 (180)
T cd03676          27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV  105 (180)
T ss_pred             cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence            346677888865432 233246999999999999999999 59999999999 999999999999999987763   344


Q ss_pred             EEeccccc--C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          153 TVLEPFLS--K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       153 g~l~~~~~--~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.+.....  .   ....++.|.+.+..  ...+.++++||.++.|++++++.+.
T Consensus       106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence            44433321  1   12234555555432  2234668899999999999999865

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.72  E-value=3.4e-17  Score=138.24  Aligned_cols=116  Identities=22%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceE--EEEEe
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVE--VVTVL  155 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~--~lg~l  155 (275)
                      .+..+.+|.+++++. +|  +|||+||+.++..+||.|++| ||+++.|| +  +||+||++|||||+....+  .++.+
T Consensus        23 ~g~~h~~v~v~v~~~-~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~   96 (158)
T TIGR02150        23 ETPLHRAFSVFLFNE-EG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRF   96 (158)
T ss_pred             CCCeEEEEEEEEEcC-CC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceE
Confidence            367788888888874 56  899999999888999999997 89999999 3  9999999999999887654  34333


Q ss_pred             ccccc---CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          156 EPFLS---KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       156 ~~~~~---~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      .....   .....++.|.+....    .+.++++|++++.|++++++.+.-.
T Consensus        97 ~~~~~~~~g~~~~~~~f~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~~~  144 (158)
T TIGR02150        97 SYRARDAWGEHELCPVFFARAPV----PLNPNPEEVAEYRWVSLEELKEILK  144 (158)
T ss_pred             EEEEecCCCcEEEEEEEEEecCC----cccCChhHeeeEEEeCHHHHHHHHh
Confidence            32221   112223344444332    3456778999999999999976543

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.72  E-value=7.6e-17  Score=139.05  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcE-EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~w-sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      +..+.+|.+++++ ++|  +|||++|+.....++|.| .+|||++++|| |+.+||+||++|||||.......++.+...
T Consensus        34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~~  109 (180)
T PRK15393         34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYFE  109 (180)
T ss_pred             CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEec
Confidence            4567777777776 456  899999997776789988 58999999999 999999999999999987766666554222


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..........|.+....    ...++++|+.++.|++++++.+.
T Consensus       110 ~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T PRK15393        110 DENCRVWGALFSCVSHG----PFALQEEEVSEVCWMTPEEITAR  149 (180)
T ss_pred             CCCceEEEEEEEEEeCC----CCCCChHHeeEEEECCHHHHhhh
Confidence            22222122233333321    23568899999999999999865

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.72  E-value=9.5e-17  Score=136.11  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSK  161 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~  161 (275)
                      .+|.+++.+ ++|  +|||+||+.  +..+|.|+||||++|.|| |+.+||+||++|||||...  ...+++.....+..
T Consensus        18 ~~v~~vI~~-~~g--~VLL~kR~~--~~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~   91 (159)
T PRK15434         18 ISLDFIVEN-SRG--EFLLGKRTN--RPAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD   91 (159)
T ss_pred             EEEEEEEEC-CCC--EEEEEEccC--CCCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeeccc
Confidence            466666665 345  899999985  356899999999999999 9999999999999999854  23555554433221


Q ss_pred             --------CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          162 --------HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       162 --------~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                              ..+.+..|.+.+...   .+.++++|+.++.|++++++......
T Consensus        92 ~~~~~~~~~~~i~~~f~~~~~~g---~~~~~~~E~~~~~W~~~~el~~~~~~  140 (159)
T PRK15434         92 NFSGTDFTTHYVVLGFRLRVAEE---DLLLPDEQHDDYRWLTPDALLASDNV  140 (159)
T ss_pred             ccCCCccceEEEEEEEEEEecCC---cccCChHHeeEEEEEeHHHhhhcccc
Confidence                    123344555555431   33456789999999999999876543

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=8.8e-17  Score=127.85  Aligned_cols=108  Identities=25%  Similarity=0.341  Sum_probs=80.4

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC----
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK----  161 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~----  161 (275)
                      |.+++++  ++  +|||++|...  .++|.|.||||++|+|| ++.+||.||++||||++......++.+......    
T Consensus         3 v~~ii~~--~~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   75 (122)
T cd04673           3 VGAVVFR--GG--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGR   75 (122)
T ss_pred             EEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCc
Confidence            4444555  35  7999999753  46899999999999999 999999999999999998878888777655421    


Q ss_pred             --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                        ....++.|.+.....   .. .+.+|+.++.|++++++.+...
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~~  116 (122)
T cd04673          76 VEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALSL  116 (122)
T ss_pred             cceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCcC
Confidence              123345555554432   11 3458999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.9e-17  Score=128.29  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc-ceEEEEEecccccCCce
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL-LVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~-~~~~lg~l~~~~~~~~~  164 (275)
                      |.+++++ .+|  +|||++|+.     .+.|.||||+++.|| |+.+||+||++||||+... ....++.+.........
T Consensus         3 ~~~~i~~-~~~--~vLL~~r~~-----~~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~   73 (120)
T cd04680           3 ARAVVTD-ADG--RVLLVRHTY-----GPGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWD   73 (120)
T ss_pred             eEEEEEC-CCC--eEEEEEECC-----CCcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCce
Confidence            4555565 345  899999875     238999999999999 9999999999999999998 88888877655433334


Q ss_pred             EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .++.|.+......   ...+.+|+.++.|+|++++.+.
T Consensus        74 ~~~~f~~~~~~~~---~~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          74 HVIVFRARADTQP---VIRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             EEEEEEecccCCC---ccCCcccEEEEEEECHHHCccc
Confidence            4555666554321   1346689999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.71  E-value=1.3e-16  Score=127.76  Aligned_cols=110  Identities=17%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc-CC--
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS-KH--  162 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~-~~--  162 (275)
                      |..++++  ++  +|||++|+...  ++|.|+||||++|.|| ++.+||+||++||||+......+++....... ..  
T Consensus         3 ~~~ii~~--~~--~vLl~~~~~~~--~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd04684           3 AYAVIPR--DG--KLLLIQKNGGP--YEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD   75 (128)
T ss_pred             eEEEEEe--CC--EEEEEEccCCC--CCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence            3444555  24  89999998653  7899999999999999 99999999999999999888888887665432 11  


Q ss_pred             ---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 ---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 ---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                         ....+.|.+....... ....+.+|+.++.|+|++++....
T Consensus        76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~~  118 (128)
T cd04684          76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIERL  118 (128)
T ss_pred             eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhccC
Confidence               2234455555543211 013455788999999999997543

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=1.9e-16  Score=131.66  Aligned_cols=112  Identities=22%  Similarity=0.316  Sum_probs=82.0

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce--EEEEEeccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV--EVVTVLEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~--~~lg~l~~~~~  160 (275)
                      ..+|.+++++ .+|  +|||++|...  ..+|.|+||||++|.|| |+.+||+||++||||+.....  ++++.+.....
T Consensus        12 ~v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~   85 (144)
T cd03430          12 LVSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYD   85 (144)
T ss_pred             eEEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEec
Confidence            3456666666 346  8999999863  46899999999999999 999999999999999987765  67776654321


Q ss_pred             ------C--CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 ------K--HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 ------~--~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                            .  ..+....|.+.+...   .....++|+.++.|++++++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~~  133 (144)
T cd03430          86 DNFFGDDFSTHYVVLGYVLKLSSN---ELLLPDEQHSEYQWLTSDELLADD  133 (144)
T ss_pred             cccccCCCccEEEEEEEEEEEcCC---cccCCchhccEeEEecHHHHhcCC
Confidence                  1  122334455555432   224567899999999999998653

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.70  E-value=6.9e-17  Score=129.53  Aligned_cols=117  Identities=30%  Similarity=0.379  Sum_probs=88.7

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      +.+|.+++++ .+|  +|||++|+.....++|.|.+|||+++++| |+.+||+||+.||||++......++.........
T Consensus         2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~   77 (134)
T PF00293_consen    2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG   77 (134)
T ss_dssp             EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence            4567776777 355  99999999876568899999999999999 9999999999999999987666666555443222


Q ss_pred             ---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          163 ---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       163 ---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                         +..++.|++.+..... ....+..|+.++.|++++++.+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~  121 (134)
T PF00293_consen   78 DPEGEIVIFFIAELPSEQS-EIQPQDEEISEVKWVPPDELLELLL  121 (134)
T ss_dssp             ESSEEEEEEEEEEEEEEES-ECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred             CcccEEEEEEEEEEeCCcc-ccCCCCccEEEEEEEEHHHhhhchh
Confidence               3566777766654321 2344555999999999999987643

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.70  E-value=1.6e-16  Score=137.22  Aligned_cols=116  Identities=21%  Similarity=0.267  Sum_probs=85.7

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceE-EEEEecc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVE-VVTVLEP  157 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~-~lg~l~~  157 (275)
                      ...+.||.+++++. +|  +|||++|+..+..+||.|++| ||++++|| |+.+||+||++|||||+...+. +++.+..
T Consensus        31 ~~~h~av~v~i~~~-~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~  106 (184)
T PRK03759         31 TPLHLAFSCYLFDA-DG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY  106 (184)
T ss_pred             CCeeeEEEEEEEcC-CC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence            45677888877773 55  899999998777889999986 89999999 9999999999999999886443 3333321


Q ss_pred             cc--cCC---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          158 FL--SKH---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       158 ~~--~~~---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ..  ...   ....+.|++....    .+.++++|+.++.|+|++++.+.-
T Consensus       107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i  153 (184)
T PRK03759        107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV  153 (184)
T ss_pred             EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence            11  111   1133456666542    235688999999999999997753

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.4e-16  Score=129.72  Aligned_cols=101  Identities=23%  Similarity=0.218  Sum_probs=73.0

Q ss_pred             eEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC---ceEEEEEEEEEc
Q 023911           98 LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH---LLRVVPVIGILS  174 (275)
Q Consensus        98 ~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~---~~~V~p~v~~l~  174 (275)
                      .+|||++|+..   ++|.|++|||++|+|| |+.+||+||++|||||....+...+.+..++...   ...+..|++.+.
T Consensus        14 ~~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   89 (131)
T cd04695          14 TKVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVP   89 (131)
T ss_pred             CEEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEec
Confidence            38999999864   6899999999999999 9999999999999999877654333332222221   223445666654


Q ss_pred             CCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          175 NKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       175 ~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      ...  ...++ +|+.++.|+|++++.+...+
T Consensus        90 ~~~--~~~~~-~E~~~~~W~~~~e~~~~~~~  117 (131)
T cd04695          90 PHQ--EVVLN-HEHTEYRWCSFAEALELAPF  117 (131)
T ss_pred             CCC--ccccC-chhcccEecCHHHHHHhcCC
Confidence            321  12233 79999999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.69  E-value=1.9e-16  Score=127.74  Aligned_cols=109  Identities=24%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL----  159 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~----  159 (275)
                      +|.+|++.. ++++.+|||++|+.      |.|+||||++|+|| |+.+||+||++||||+.......++.+....    
T Consensus         4 ~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   75 (130)
T cd03428           4 SAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQV   75 (130)
T ss_pred             EEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc
Confidence            444443433 45567899999874      78999999999999 9999999999999999988777653332111    


Q ss_pred             cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ......++.|++.+....  .+.++ +|+.++.|++++++.+.-
T Consensus        76 ~~~~~~~~~f~~~~~~~~--~~~~~-~E~~~~~W~~~~e~~~~~  116 (130)
T cd03428          76 RGKLKTVTYFLAELRPDV--EVKLS-EEHQDYRWLPYEEALKLL  116 (130)
T ss_pred             cCcceEEEEEEEEeCCCC--ccccc-cceeeEEeecHHHHHHHc
Confidence            223456677888776322  23445 899999999999997653

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.69  E-value=3.7e-16  Score=129.43  Aligned_cols=113  Identities=20%  Similarity=0.199  Sum_probs=81.2

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-C
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-H  162 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-~  162 (275)
                      .||.+++++ .++  +|||++|...  .++|.|+||||++++|| |+.+||+||++||||++......++.+...... .
T Consensus        14 ~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   87 (142)
T cd04700          14 RAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV   87 (142)
T ss_pred             eeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence            344444555 345  7899888643  35899999999999999 999999999999999998888888766433222 2


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      ....+.|++..... ...+. ..+|+.++.|+|++++.+...
T Consensus        88 ~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~  127 (142)
T cd04700          88 LVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA  127 (142)
T ss_pred             EEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence            22345666666432 22222 337999999999999987654

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.2e-16  Score=126.20  Aligned_cols=107  Identities=24%  Similarity=0.307  Sum_probs=76.0

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc----
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS----  160 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~----  160 (275)
                      +|.+++++ .+|  +|||+||..    +.|.|+||||++|.|| |+.+||+||++||||+++..+.+++.....+.    
T Consensus         4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   75 (125)
T cd04696           4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH   75 (125)
T ss_pred             EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence            34444555 345  799998753    5799999999999999 99999999999999999887776655433221    


Q ss_pred             -CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 -KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 -~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                       ...+.+..|.+.....   ....+ +|+.++.|+|++++.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~~  115 (125)
T cd04696          76 KPAHFVLFDFFARTDGT---EVTPN-EEIVEWEWVTPEEALDYP  115 (125)
T ss_pred             CccEEEEEEEEEEecCC---cccCC-cccceeEEECHHHHhcCC
Confidence             1122344555555431   22333 789999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=4.5e-16  Score=128.00  Aligned_cols=110  Identities=22%  Similarity=0.273  Sum_probs=74.3

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE------Eec
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT------VLE  156 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg------~l~  156 (275)
                      +.+|.+++++.+.+  +|||++|+.     .|.|++|||++|+|| ++.+||.||++||||+....+..++      .+.
T Consensus         2 ~~~~~~~v~~~~~~--~vLLv~r~~-----~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   73 (138)
T cd03674           2 HFTASAFVVNPDRG--KVLLTHHRK-----LGSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP   73 (138)
T ss_pred             cEEEEEEEEeCCCC--eEEEEEEcC-----CCcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence            44556666663224  899999875     588999999999999 9999999999999999876655543      111


Q ss_pred             ccccC-----Cce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          157 PFLSK-----HLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       157 ~~~~~-----~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+...     ... ....|++.+... ...+ ++++|+.++.|+|++++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL  123 (138)
T ss_pred             ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence            11111     111 223455554432 1111 36689999999999999654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=4.2e-16  Score=127.03  Aligned_cols=97  Identities=23%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--CceEEEEEEEEEcCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--HLLRVVPVIGILSNK  176 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--~~~~V~p~v~~l~~~  176 (275)
                      +|||++|+...  ++|.|++|||++|.|| ++.+||+||++||||+.....++++.+......  ....++.|++.....
T Consensus        13 ~vLL~~r~~~~--~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   89 (137)
T cd03427          13 KVLLLNRKKGP--GWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG   89 (137)
T ss_pred             EEEEEEecCCC--CCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence            89999998754  7899999999999999 999999999999999999888888877644332  333455555544321


Q ss_pred             CCCCCCCChhhhhcceecChhhhhcc
Q 023911          177 KAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       177 ~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         ... +.+|..++.|++++++.+.
T Consensus        90 ---~~~-~~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          90 ---EPL-KESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             ---ccC-CCCccccceEEcHhhcccc
Confidence               122 3456678999999998754

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=4.2e-16  Score=125.90  Aligned_cols=109  Identities=28%  Similarity=0.284  Sum_probs=76.1

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc--c
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF--L  159 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~--~  159 (275)
                      ...+|.+++++. ++  +|||++|+..     |.|+||||++++|| |+.+||+||++||||+.......++.+...  +
T Consensus         6 ~~~~~~~~v~~~-~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~   76 (132)
T cd04677           6 ILVGAGVILLNE-QG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFY   76 (132)
T ss_pred             cccceEEEEEeC-CC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCcee
Confidence            344555656663 45  8999999753     78999999999999 999999999999999998888877655321  1


Q ss_pred             c--CCc---eEE-EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          160 S--KHL---LRV-VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ~--~~~---~~V-~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .  ..+   ..+ ..+++....   ..+..+.+|+.++.|+|++++.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~W~~~~e~~~~  122 (132)
T cd04677          77 VKPNGDDEQYIVTLYYVTKVFG---GKLVPDGDETLELKFFSLDELPEL  122 (132)
T ss_pred             ecCCCCcEEEEEEEEEEEeccC---CcccCCCCceeeEEEEChhHCccc
Confidence            1  111   122 222333222   122456689999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.67  E-value=5.4e-16  Score=128.66  Aligned_cols=109  Identities=18%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEEecc---
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTVLEP---  157 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~---  157 (275)
                      +.+|.+++++ .+|  +|||++|+.    .+|.|++|||++|.|| |+.+||+||++|||||..  ....+++....   
T Consensus         7 ~~~v~~vi~~-~~~--~vLl~~r~~----~~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   78 (148)
T PRK09438          7 PVSVLVVIYT-PDL--GVLMLQRAD----DPDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEY   78 (148)
T ss_pred             ceEEEEEEEe-CCC--eEEEEEecC----CCCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeeccccccccc
Confidence            4456666666 345  799999864    3689999999999999 999999999999999987  44444321100   


Q ss_pred             --c--------ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          158 --F--------LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       158 --~--------~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                        +        ........+.|.+.....  .  .++.+|+.++.|++++++.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~--~~~~~E~~~~~W~~~~e~~~~~  130 (148)
T PRK09438         79 EIFPHWRHRYAPGVTRNTEHWFCLALPHE--R--PVVLTEHLAYQWLDAREAAALT  130 (148)
T ss_pred             ccchhhhhccccccCCceeEEEEEecCCC--C--ccccCcccceeeCCHHHHHHHh
Confidence              0        011123455666654432  1  2344599999999999997653

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.67  E-value=9.6e-16  Score=132.55  Aligned_cols=112  Identities=22%  Similarity=0.225  Sum_probs=85.8

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .||+|+.+. +++  +|||+++.. ...+++.|+||||++|+|| ++.+||+||++||||+.+..++.++.+....+...
T Consensus        48 ~~v~v~~~~-~~~--~vlLvrq~r-~~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~  122 (185)
T PRK11762         48 GAVMIVPIL-DDD--TLLLIREYA-AGTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYFS  122 (185)
T ss_pred             CEEEEEEEe-CCC--EEEEEEeec-CCCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccC
Confidence            445554444 345  799998753 3467888999999999999 99999999999999999999999998876655556


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..++.|++......  ....++.|..++.|+|++++.+.
T Consensus       123 ~~~~~f~a~~~~~~--~~~~~e~E~i~~~~~~~~e~~~~  159 (185)
T PRK11762        123 SKMNIVLAEDLYPE--RLEGDEPEPLEVVRWPLADLDEL  159 (185)
T ss_pred             cEEEEEEEEccccc--cCCCCCCceeEEEEEcHHHHHHH
Confidence            67788887643321  12346678889999999998764

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.4e-16  Score=124.29  Aligned_cols=108  Identities=28%  Similarity=0.263  Sum_probs=74.2

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-ccC-C
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF-LSK-H  162 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~-~~~-~  162 (275)
                      +|.+++++ ++|  +|||++|+.....++|.|+||||++|+|| ++.+||+||++||||++......++..... .+. +
T Consensus         3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04699           3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY   78 (129)
T ss_pred             eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence            34444555 335  89999998776567999999999999999 999999999999999988776654322211 111 1


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      ......|.+.....    ...+++|+.++.|+|++++.
T Consensus        79 ~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~  112 (129)
T cd04699          79 NVIYLVFVCEALSG----AVKLSDEHEEYAWVTLEELA  112 (129)
T ss_pred             EEEEEEEEeeecCC----cccCChhheEEEEecHHHhh
Confidence            22223333332221    12355789999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.67  E-value=1.3e-15  Score=127.23  Aligned_cols=113  Identities=25%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      ....+|-+++..  +|  +|||+||+..  ++.|.|++|||++|.|| |+.+||+||++|||||++..+++++.++....
T Consensus         8 ~p~~~v~~~i~~--~~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~r   80 (145)
T COG1051           8 TPLVAVGALIVR--NG--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGR   80 (145)
T ss_pred             CcceeeeEEEEe--CC--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCC
Confidence            344556555554  34  8999999874  57899999999999999 99999999999999999888999888876542


Q ss_pred             C-CceEEEE-EEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 K-HLLRVVP-VIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~-~~~~V~p-~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      . .+.++.. |++..... .. ...+.++...+.|++++++...
T Consensus        81 d~r~~~v~~~~~~~~~~g-~~-~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          81 DPRGHHVSFLFFAAEPEG-EL-LAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             CCceeEEEEEEEEEecCC-Cc-ccCChhhHhhcceecHhHcccc
Confidence            2 2233332 22332221 11 1234468889999999998763

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1e-15  Score=123.99  Aligned_cols=104  Identities=22%  Similarity=0.273  Sum_probs=73.6

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceE
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLR  165 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~  165 (275)
                      |.+++++ .+|  +|||++|...  .++|.|+||||++|.|| ++.+||+||++||||++....+.++.....   ....
T Consensus         3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~   73 (123)
T cd04671           3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF   73 (123)
T ss_pred             EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence            3344455 345  8999999753  46899999999999999 999999999999999998888777654321   2233


Q ss_pred             EEEEEEEEcCCCCCCC-CCChhhhhcceecChhhh
Q 023911          166 VVPVIGILSNKKAFTP-TPNPAEVEEVFDAPLEMF  199 (275)
Q Consensus       166 V~p~v~~l~~~~~~~~-~~~~~EV~~v~wvpl~el  199 (275)
                      ...|.+...+. .... ..+..|+.++.|+|++++
T Consensus        74 ~~~f~a~~~~g-~~~~~~~~~~e~~~~~W~~~~el  107 (123)
T cd04671          74 RFVFTGNITGG-DLKTEKEADSESLQARWYSNKDL  107 (123)
T ss_pred             EEEEEEEEeCC-eEccCCCCCcceEEEEEECHHHC
Confidence            34455554331 1111 123467889999999999

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.67  E-value=1.6e-15  Score=121.32  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=75.3

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|+.. +.++|.|+||||++++|| ++.+||.||+.||+|++......++.+.+.++.....+..|.+.....  
T Consensus        17 ~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   92 (129)
T PRK10776         17 EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWEG--   92 (129)
T ss_pred             EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEECC--
Confidence            8999999865 467999999999999999 999999999999999987777777777666665555566555543321  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         .+.+.|+.++.|++++++...
T Consensus        93 ---~~~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         93 ---EPWGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             ---ccCCccCCccEEecHHHCccC
Confidence               123457888999999998653

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.3e-15  Score=120.86  Aligned_cols=93  Identities=28%  Similarity=0.369  Sum_probs=70.7

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEeccccc---CCceEEEEEEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFLS---KHLLRVVPVIGIL  173 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~~---~~~~~V~p~v~~l  173 (275)
                      ++||++|+.     .|.|.||||+++++| ++.+||+||++||||+....  ++.++.+.....   .....++.|++.+
T Consensus        13 ~vLl~~r~~-----~~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~   86 (118)
T cd04690          13 RVLLVRKRG-----TDVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAEL   86 (118)
T ss_pred             eEEEEEECC-----CCcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcc
Confidence            899998864     578999999999999 99999999999999998877  888877765322   1223455555554


Q ss_pred             cCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          174 SNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..    ... ..+|+.++.|+|++++...
T Consensus        87 ~~----~~~-~~~e~~~~~W~~~~e~~~~  110 (118)
T cd04690          87 TG----EPV-PAAEIEEIRWVDYDDPADD  110 (118)
T ss_pred             cC----CcC-CCchhhccEEecHHHcccc
Confidence            43    222 3479999999999998443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.66  E-value=1.4e-15  Score=123.54  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--CceEEEEEEEEEcCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--HLLRVVPVIGILSNK  176 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--~~~~V~p~v~~l~~~  176 (275)
                      ++||++|...   ..+.|+||||++|+|| |+.+||+||++||||++.....+++.+......  ..+..+.|++.+...
T Consensus        12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   87 (134)
T cd03675          12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH   87 (134)
T ss_pred             EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence            8999999764   4679999999999999 999999999999999998887777765433222  223344566766542


Q ss_pred             CCCCCCCChhhhhcceecChhhhhccC
Q 023911          177 KAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       177 ~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .. . ....+|+.++.|++++++.+..
T Consensus        88 ~~-~-~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          88 LP-D-QPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             CC-C-CCCCCCceeeEEEeHHHHHhhh
Confidence            11 1 1234689999999999998765

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.4e-15  Score=121.77  Aligned_cols=102  Identities=17%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce-EEEEEecccccCC----ceEEEEE
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV-EVVTVLEPFLSKH----LLRVVPV  169 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~-~~lg~l~~~~~~~----~~~V~p~  169 (275)
                      ++..+|||++|..     .|.|+||||++|.|| |+.+||+||++||||+..... ..++.+.......    ...++.|
T Consensus        12 ~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f   85 (122)
T cd04666          12 GGEVEVLLVTSRR-----TGRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF   85 (122)
T ss_pred             CCceEEEEEEecC-----CCeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence            3446899999864     288999999999999 999999999999999998777 8888876554322    3445555


Q ss_pred             EEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          170 IGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       170 v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      .+.+....  . .....|..++.|++++++++.-.+
T Consensus        86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             EEEEeccc--c-CCcccCceEEEEecHHHHHHhcCC
Confidence            55554321  1 123356789999999999776544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.65  E-value=1.3e-15  Score=127.00  Aligned_cols=99  Identities=24%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|..     ++.|+||||++|.|| |+.+||+||++||||+.+........+.. ....+..++.|++...... 
T Consensus        15 ~vLLvr~~~-----~~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~-   86 (145)
T cd03672          15 KVLLVKGWK-----SKSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVKLYIVPGVPED-   86 (145)
T ss_pred             EEEEEEecC-----CCCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEEEEEEecCCCC-
Confidence            899999853     458999999999999 99999999999999998765321111111 1112234555554422211 


Q ss_pred             CCCCC-ChhhhhcceecChhhhhccCCC
Q 023911          179 FTPTP-NPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       179 ~~~~~-~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      ....+ +.+|+.++.|+|++++.+....
T Consensus        87 ~~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          87 TPFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             cccCcCChhhhheEEEeeHHHhhhhhhh
Confidence            11122 3579999999999999876543

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.9e-15  Score=120.48  Aligned_cols=96  Identities=18%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc----eEEEEEEEEEc
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL----LRVVPVIGILS  174 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~----~~V~p~v~~l~  174 (275)
                      +|||++|..     .+.|.+|||++|+|| |+.+||+||++||||++......++.+.......+    ...+.|.+...
T Consensus        13 ~vLlv~~~~-----~~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (125)
T cd04689          13 KVLLARVIG-----QPHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS   86 (125)
T ss_pred             EEEEEEecC-----CCCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence            899999853     467999999999999 99999999999999999888888887765432221    12344444443


Q ss_pred             CCCCCCCCCChhhhhcceecChhhhh
Q 023911          175 NKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       175 ~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      .........+.+|+.++.|++++++.
T Consensus        87 ~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          87 WLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             cccccCCccCccceEEEEEccHHHcc
Confidence            22111122345788999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=3.6e-15  Score=120.57  Aligned_cols=101  Identities=23%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc--------CCceEEEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS--------KHLLRVVPVI  170 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~--------~~~~~V~p~v  170 (275)
                      +|||++|...   ..+.|.+|||++|.|| ++.+||+||+.||||+.....+++........        ......+.|+
T Consensus        13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~   88 (128)
T cd04687          13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE   88 (128)
T ss_pred             EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence            8999999643   2578999999999999 99999999999999999876665554433211        1122334455


Q ss_pred             EEEcCCCCCCC--CCChhhhhcceecChhhhhccCC
Q 023911          171 GILSNKKAFTP--TPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       171 ~~l~~~~~~~~--~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      +..........  ..+ .|..++.|+|++++.+...
T Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~  123 (128)
T cd04687          89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIPL  123 (128)
T ss_pred             EEECCCCcccccCCCC-CCEEeeEEEcHHHhCcccc
Confidence            55543221111  223 3456899999999976543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.64  E-value=3e-15  Score=118.26  Aligned_cols=97  Identities=23%  Similarity=0.322  Sum_probs=77.8

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      ++||++|+... .++|.|+||||+++.+| ++.+||.||+.||+|++......++...+..+.....+..|.+.....  
T Consensus        14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   89 (124)
T cd03425          14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG--   89 (124)
T ss_pred             EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence            89999998764 68999999999999999 999999999999999988777777777666665566666666655431  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         ...+.|..++.|++++++.+.
T Consensus        90 ---~~~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          90 ---EPQLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             ---CcccccCceEEEeeHHHcccC
Confidence               123567889999999998754

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.64  E-value=3.3e-15  Score=125.90  Aligned_cols=112  Identities=20%  Similarity=0.236  Sum_probs=79.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc---
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---  159 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---  159 (275)
                      +.+|.+++++ .+|  +|||++|+.    .+|.|++|||++++|| ++.+||.||++||||+....+.+++.+....   
T Consensus         8 ~~~v~~~i~~-~~g--~vLL~~r~~----~~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~   79 (156)
T PRK00714          8 RPNVGIILLN-RQG--QVFWGRRIG----QGHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD   79 (156)
T ss_pred             CCeEEEEEEe-cCC--EEEEEEEcC----CCCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence            3456666776 356  899999984    2589999999999999 9999999999999999998888888763210   


Q ss_pred             -c-------C---CceEEEEEEEEEcCC-CCCCCCC-ChhhhhcceecChhhhhcc
Q 023911          160 -S-------K---HLLRVVPVIGILSNK-KAFTPTP-NPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 -~-------~---~~~~V~p~v~~l~~~-~~~~~~~-~~~EV~~v~wvpl~ell~~  202 (275)
                       .       .   .+...+.|++..... ....+.. +.+|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~  135 (156)
T PRK00714         80 LPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ  135 (156)
T ss_pred             CcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence             0       1   111345566655321 1122222 3469999999999999764

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=3.8e-15  Score=117.83  Aligned_cols=91  Identities=24%  Similarity=0.299  Sum_probs=71.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|+.      |.|+||||++++|| ++.+||.||++||||+....+..++.+..    .....+.|++.+.... 
T Consensus        12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~-   79 (112)
T cd04667          12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPSA-   79 (112)
T ss_pred             EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCcC-
Confidence            899999863      88999999999999 99999999999999999888887776542    1223456666655321 


Q ss_pred             CCCCCChhhhhcceecChhhhhccC
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                        ....++|+.++.|+|++++.+..
T Consensus        80 --~~~~~~e~~~~~W~~~~el~~~~  102 (112)
T cd04667          80 --QPKPSNEIADCRWLSLDALGDLN  102 (112)
T ss_pred             --CCCCchheeEEEEecHHHhhhcc
Confidence              12346899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.63  E-value=6.5e-15  Score=119.67  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=74.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|... +.++|.|+||||++|.|| ++.+||+||+.||||+......+++...+..+...+.++.|.+.....  
T Consensus        16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   91 (135)
T PRK10546         16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHG--   91 (135)
T ss_pred             EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecC--
Confidence            8999999754 357899999999999999 999999999999999998777777766655555555566665443321  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .  +...|..++.|++++++.+.
T Consensus        92 -~--~~~~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         92 -E--LQAHEHQALVWCTPEEALRY  112 (135)
T ss_pred             -c--ccccccceeEEcCHHHcccC
Confidence             1  12356778899999988653

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.2e-15  Score=118.70  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC----ceEEEEEEEEEc
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH----LLRVVPVIGILS  174 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~----~~~V~p~v~~l~  174 (275)
                      +|||++|..     .+.|+||||++|.|| ++.+||+||++||||+.......++.+.......    ...++.|.+.+.
T Consensus        13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (126)
T cd04688          13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL   86 (126)
T ss_pred             EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence            899999874     578999999999999 9999999999999999988888888766433221    223455666655


Q ss_pred             CCCCCC----CCCChhhhhcceecChhhhhcc
Q 023911          175 NKKAFT----PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       175 ~~~~~~----~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.....    ...+.+|+.++.|++++++...
T Consensus        87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             CCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            432110    0124578999999999999854

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4.9e-15  Score=119.22  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|...   ..+.|+||||++|.|| |+.+||.||++||||+......+++....    .+...+.|++...... 
T Consensus        13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~-   83 (121)
T cd04669          13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK-   83 (121)
T ss_pred             EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence            8999999753   2588999999999999 99999999999999999866666665543    2233566666554321 


Q ss_pred             CCC-------CCChhhhhcceecChhhhhccC
Q 023911          179 FTP-------TPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       179 ~~~-------~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ...       ..+.++..++.|++++++.+..
T Consensus        84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~  115 (121)
T cd04669          84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP  115 (121)
T ss_pred             ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence            110       0113445678999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=7.6e-15  Score=117.98  Aligned_cols=105  Identities=26%  Similarity=0.304  Sum_probs=75.2

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC---
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK---  161 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~---  161 (275)
                      +|.++++++  +  +|||++|..     .|.|+||||++++|| |+.+||+||++||||+......+++........   
T Consensus         4 ~v~~~i~~~--~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~   73 (123)
T cd04672           4 DVRAAIFKD--G--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPP   73 (123)
T ss_pred             eEEEEEEEC--C--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCC
Confidence            455555653  4  899999864     688999999999999 999999999999999988666776665432211   


Q ss_pred             Cce--EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLL--RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~--~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ...  ....|.+.+...   .+..+ +|+.++.|++++++.+..
T Consensus        74 ~~~~~~~~~f~~~~~~~---~~~~~-~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          74 QPYQVYKLFFLCEILGG---EFKPN-IETSEVGFFALDDLPPLS  113 (123)
T ss_pred             CceEEEEEEEEEEecCC---cccCC-CceeeeEEECHHHCcccc
Confidence            122  233455555432   22344 789999999999986643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=8.9e-15  Score=116.67  Aligned_cols=106  Identities=26%  Similarity=0.306  Sum_probs=73.0

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc---cc-
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF---LS-  160 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~---~~-  160 (275)
                      +|.+++++ ++|  +|||++|+..     |.|+||||+++.|| ++.+||.||++||||++....++++.+...   .+ 
T Consensus         4 ~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~   74 (129)
T cd04676           4 GVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTY   74 (129)
T ss_pred             eEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceeec
Confidence            44454555 345  8999999863     88999999999999 999999999999999988777765543221   11 


Q ss_pred             -C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 -K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 -~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .   +......|++.+...   ....+.+|+.++.|++++++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          75 PNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             CCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence             1   122223344444321   11235578899999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=2e-14  Score=117.28  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC-cceEEEEEecccc---cC----CceEEEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP-LLVEVVTVLEPFL---SK----HLLRVVPVI  170 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~-~~~~~lg~l~~~~---~~----~~~~V~p~v  170 (275)
                      +|||++|..     .|.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+.   ..    .....+.|+
T Consensus        12 ~vLLv~~~~-----~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   85 (131)
T cd04686          12 KILLLYTKR-----YGDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYL   85 (131)
T ss_pred             EEEEEEEcC-----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEE
Confidence            899999864     367999999999999 999999999999999986 4455666654321   11    122345677


Q ss_pred             EEEcCCCCCCCCCChhhh---hcceecChhhhhccC
Q 023911          171 GILSNKKAFTPTPNPAEV---EEVFDAPLEMFIKDE  203 (275)
Q Consensus       171 ~~l~~~~~~~~~~~~~EV---~~v~wvpl~ell~~~  203 (275)
                      +.+.... ..+.+++.|.   ..+.|+|++++.+..
T Consensus        86 ~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~  120 (131)
T cd04686          86 CEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHN  120 (131)
T ss_pred             EEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhh
Confidence            7765422 2234454454   358999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=2.7e-14  Score=116.09  Aligned_cols=105  Identities=23%  Similarity=0.104  Sum_probs=75.7

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      +.+|.+++++  ++  +|||.+|...  ...|.|+||||++|.|| ++.+||+||++||||++......++.....  ..
T Consensus        13 ~~~v~~ii~~--~~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~   83 (130)
T cd04511          13 KIIVGCVPEW--EG--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSVP--HI   83 (130)
T ss_pred             cEEEEEEEec--CC--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEecC--Cc
Confidence            3444444554  34  8999999753  35789999999999999 999999999999999987666666654321  22


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      ....+.|++.+... .  .. ...|..++.|++++++.
T Consensus        84 ~~~~~~f~~~~~~~-~--~~-~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          84 SQVYMFYRARLLDL-D--FA-PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             eEEEEEEEEEEcCC-c--cc-CCcchhceEEECHHHCC
Confidence            23455677776542 2  22 23678899999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=2.3e-14  Score=112.01  Aligned_cols=108  Identities=29%  Similarity=0.364  Sum_probs=78.6

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc--CCc
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS--KHL  163 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~--~~~  163 (275)
                      +.+++++. ++  +|||++|+..   ++|.|+||||+++.+| ++.++|+||++||+|+.......++.+.....  ...
T Consensus         3 ~~~i~~~~-~~--~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   75 (123)
T cd02883           3 VGAVILDE-DG--RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEH   75 (123)
T ss_pred             eEEEEECC-CC--CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCce
Confidence            33444553 34  7999999875   7899999999999999 99999999999999998765555555443332  344


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..+..|.+.+..... . ..+..|+.++.|++++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~-~-~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          76 AVVFVFLARLVGGEP-T-LLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             EEEEEEEEEeCCCCc-C-CCCCCccceEEEEcHHHCccc
Confidence            456666666654221 1 245678899999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>TIGR00586 mutt mutator mutT protein

Probab=99.59  E-value=3.8e-14  Score=113.69  Aligned_cols=97  Identities=22%  Similarity=0.356  Sum_probs=76.1

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +||+.+|... +.+.|.|+||||++|.|| ++.++|.||+.||+|+.......++...+.++.....++.|.+...+.. 
T Consensus        17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~-   93 (128)
T TIGR00586        17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGGP-   93 (128)
T ss_pred             EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCCC-
Confidence            8999999754 468999999999999999 9999999999999999877666677776666666666777776654321 


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                          +...|..++.|++++++.+.
T Consensus        94 ----~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        94 ----PGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             ----cCcccccccEEeCHHHCCcc
Confidence                12345678899999988764

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.58  E-value=1.3e-14  Score=131.96  Aligned_cols=111  Identities=12%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      +.....+|++++.+  ++  +|||.+|...   .+|.|++|||++|+|| |+++||+||++|||||.+..+++++..+..
T Consensus       128 yp~~~paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~~s~~~~  199 (256)
T PRK00241        128 YPRIAPCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYVGSQPWP  199 (256)
T ss_pred             CCCCCCEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEEEeEeec
Confidence            33334456665544  34  8999998753   2799999999999999 999999999999999999988888876432


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..  ...++.|.+.....   .+.++++|+.++.|++++++...
T Consensus       200 ~p--~~lm~~f~a~~~~~---~~~~~~~Ei~~a~W~~~del~~l  238 (256)
T PRK00241        200 FP--HSLMLGFHADYDSG---EIVFDPKEIADAQWFRYDELPLL  238 (256)
T ss_pred             CC--CeEEEEEEEEecCC---cccCCcccEEEEEEECHHHCccc
Confidence            22  23456677766532   24567789999999999998543

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=3.8e-14  Score=115.69  Aligned_cols=99  Identities=20%  Similarity=0.110  Sum_probs=64.8

Q ss_pred             CCceEEEEEEeCCC--CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEE
Q 023911           95 AGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGI  172 (275)
Q Consensus        95 ~g~~~VLL~rRs~~--l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~  172 (275)
                      ++.++|||++|...  .+...|.|+||||++|.+| ++.+||+||++||||++.. ...+. +..+....+..++.|++.
T Consensus        12 ~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~~~~v~~fl~~   88 (126)
T cd04662          12 DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSGGKVVHAWAVE   88 (126)
T ss_pred             CCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCCCeEEEEEEEE
Confidence            46679999998432  2456889999999999999 9999999999999999865 22222 222222233345665555


Q ss_pred             EcCCC-------------CCCCCCC-hhhhhcceecCh
Q 023911          173 LSNKK-------------AFTPTPN-PAEVEEVFDAPL  196 (275)
Q Consensus       173 l~~~~-------------~~~~~~~-~~EV~~v~wvpl  196 (275)
                      .+...             ...+... .+|.+++.|+|+
T Consensus        89 ~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          89 ADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             ecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            43210             1112222 477788888773

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN02791 Nudix hydrolase homolog

Probab=99.57  E-value=2.5e-14  Score=146.00  Aligned_cols=121  Identities=18%  Similarity=0.165  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEE
Q 023911           78 RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTV  154 (275)
Q Consensus        78 ~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~  154 (275)
                      ..+..+.||.|.|++.++|  +|||+||+..+.+|||.|++ +|||++.|| +..+||+||++||+||..  +.+..++.
T Consensus        27 ~~Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~  103 (770)
T PLN02791         27 RDGDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFV  103 (770)
T ss_pred             cCCCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeee
Confidence            3467899999999984345  89999999999999999999 799999999 999999999999999974  34555665


Q ss_pred             eccc-c-cC----CceEEEEEEEEEcC-CCCCCCCCChhhhhcceecChhhhhc
Q 023911          155 LEPF-L-SK----HLLRVVPVIGILSN-KKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       155 l~~~-~-~~----~~~~V~p~v~~l~~-~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      +... . ..    .+...+.|++.... .+....+++++||+++.|+++++|.+
T Consensus       104 ~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~  157 (770)
T PLN02791        104 FLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS  157 (770)
T ss_pred             EEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence            3211 1 11    11233444443222 11123567899999999999999974

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.57  E-value=1.6e-14  Score=125.26  Aligned_cols=115  Identities=18%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCC----CCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRM----STHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l----~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      +|.|++++.+++  +|||+++-...    +..++.|+||||++|+|| ++++||+||++||||+....++.++.+.....
T Consensus        46 ~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g  122 (185)
T TIGR00052        46 AAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSSPG  122 (185)
T ss_pred             eEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence            444444543334  78888754321    114678999999999999 99999999999999999999998887765555


Q ss_pred             CCceEEEEEEEEEcCCCCCC-CCCChhhhhcceecChhhhhcc
Q 023911          161 KHLLRVVPVIGILSNKKAFT-PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~-~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+...++.|++.+....... ...+++|..++.|+|++++.+.
T Consensus       123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~  165 (185)
T TIGR00052       123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW  165 (185)
T ss_pred             CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence            55667888888865421111 1234466678999999998764

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.53  E-value=9.4e-14  Score=122.11  Aligned_cols=116  Identities=22%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCC-----CCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTH-----SGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE  156 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~-----~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~  156 (275)
                      ..++++|+ ++.+++  +|+|++.-. ....     +-.|+||+|++|+|| ++.+||+||+.||||+....++.++.+.
T Consensus        49 ~~~V~il~-~~~~~~--~vlLvrQyR-~~~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~  123 (202)
T PRK10729         49 GHAAVLLP-FDPVRD--EVVLIEQIR-IAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYL  123 (202)
T ss_pred             CCeEEEEE-EECCCC--EEEEEEeee-cccccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEE
Confidence            34444444 442334  788877532 2221     246899999999999 9999999999999999999888888776


Q ss_pred             ccccCCceEEEEEEEEEcCC--CCCCCCCChhhhhcceecChhhhhcc
Q 023911          157 PFLSKHLLRVVPVIGILSNK--KAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       157 ~~~~~~~~~V~p~v~~l~~~--~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +....+...++.|++.....  .......+++|..++.|+|++++.+.
T Consensus       124 ~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~  171 (202)
T PRK10729        124 ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  171 (202)
T ss_pred             cCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence            66666777889999886321  11112457788889999999999765

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.52  E-value=2e-13  Score=123.30  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCC----------------CHHHHHHHHHHHH
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDR----------------DDGDTATREAKEE  141 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~----------------s~~eaAlRE~~EE  141 (275)
                      .+..+.||.|+|++ .+|  +|||+||+..+..+||.|+.. |||+..|++                +..+||+||++||
T Consensus        52 ~gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE  128 (247)
T PLN02552         52 RGLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE  128 (247)
T ss_pred             CCceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence            35678899998888 456  899999999999999999664 455544420                1678999999999


Q ss_pred             hCCCCcc-----eEEEEEecccccCC------c----eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          142 IGLDPLL-----VEVVTVLEPFLSKH------L----LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       142 tGL~~~~-----~~~lg~l~~~~~~~------~----~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +||+...     +.+++.+.......      +    ..+..++.. .......++++++||+++.|++++++.+.
T Consensus       129 lGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~  203 (247)
T PLN02552        129 LGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEM  203 (247)
T ss_pred             hCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence            9998543     55565443322111      1    222222222 11112245789999999999999999875

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.52  E-value=1.6e-13  Score=129.40  Aligned_cols=111  Identities=19%  Similarity=0.207  Sum_probs=74.8

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec---cc--
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE---PF--  158 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~---~~--  158 (275)
                      .+|.++++.  +|  +|||++|+..  ..+|.|+||||++|+|| ++.+||+||++|||||++....+.+.+.   .+  
T Consensus       204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            344344444  45  8999999864  35899999999999999 9999999999999999875544433321   11  


Q ss_pred             cc---CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LS---KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~---~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..   ......+.|.+.+........ ...+|+.++.|+|++++.+.
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence            11   112334556666543221112 24478999999999998754

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=2.6e-13  Score=111.63  Aligned_cols=113  Identities=16%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC-cceEEEEEecccc----c
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP-LLVEVVTVLEPFL----S  160 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~-~~~~~lg~l~~~~----~  160 (275)
                      +-+++++ .+|  +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+    .
T Consensus         3 ~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~   78 (133)
T cd04685           3 ARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV   78 (133)
T ss_pred             EEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc
Confidence            4444555 355  89999987643346889999999999999 999999999999999987 4444443322211    1


Q ss_pred             CCceEEEEEEEEEcCCCCCCCC---CChhhhhcceecChhhhhcc
Q 023911          161 KHLLRVVPVIGILSNKKAFTPT---PNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~~~---~~~~EV~~v~wvpl~ell~~  202 (275)
                      ......+.|++.+.........   ...+++..+.|++++++.+.
T Consensus        79 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          79 DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            1112234555555431111111   11234668999999999775

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.49  E-value=5.1e-13  Score=107.94  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceE
Q 023911           86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLR  165 (275)
Q Consensus        86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~  165 (275)
                      |+|+++.  ++  ++||++|.      .+.|+||||++|.|| ++.+||+||++||+|+....+..++.+..........
T Consensus         3 v~vi~~~--~~--~vLl~~~~------~~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~   71 (118)
T cd04665           3 VLVICFY--DD--GLLLVRHK------DRGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFE   71 (118)
T ss_pred             EEEEEEE--CC--EEEEEEeC------CCEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEE
Confidence            4444444  24  79999875      356999999999999 9999999999999999999999998875433333444


Q ss_pred             EEEEEEEEcCCCCCCCCCChhhhhcceecChhhh
Q 023911          166 VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMF  199 (275)
Q Consensus       166 V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~el  199 (275)
                      ...|.+.+......  . ...|+....|++....
T Consensus        72 ~~~y~a~~~~~~~~--~-~~~E~~~~~~~~~~~~  102 (118)
T cd04665          72 TLVYPAVSAQLEEK--A-SYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEEEEEecccc--c-ccccccCcEEeccCCc
Confidence            55666666543221  2 3489999999986544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.47  E-value=4e-13  Score=109.88  Aligned_cols=95  Identities=19%  Similarity=0.043  Sum_probs=67.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec-----cccc-------CCceEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE-----PFLS-------KHLLRV  166 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~-----~~~~-------~~~~~V  166 (275)
                      ++||++|+..   ..|.|+||||++|+|| |+.+||.||++||||+.... .+++..+     ....       ..+..+
T Consensus        14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (132)
T cd04661          14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV   88 (132)
T ss_pred             EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence            7899998642   3689999999999999 99999999999999997653 3333211     1010       112346


Q ss_pred             EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          167 VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       167 ~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.|.+.+.+.   .+.++ +|+.++.|++++++.+.
T Consensus        89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~~  120 (132)
T cd04661          89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEEEEecC---ccccC-CCcceeEecCHHHHHhh
Confidence            6666766442   12233 78999999999998764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK08999 hypothetical protein; Provisional

Probab=99.43  E-value=1.8e-12  Score=120.15  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|... +.++|.|+||||++|.|| ++.+||.||++||+|+.......++...+.++.....+++|.+.....  
T Consensus        18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~--   93 (312)
T PRK08999         18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG--   93 (312)
T ss_pred             eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence            8999999754 468999999999999999 999999999999999987776767776666665556666665543321  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         .++..|..++.|++++++.+-
T Consensus        94 ---~~~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         94 ---EPHGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             ---cccCccCCccEEecHHHcccC
Confidence               123467788899999998764

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.42  E-value=2e-12  Score=112.81  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=81.4

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCC------CCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMST------HSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE  156 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~------~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~  156 (275)
                      .+++++ +++.+++  +|+|++.=. ...      ..-.|+||+|.+|+ + ++.+||+||+.||||+....++.++.+.
T Consensus        46 ~~v~Vl-~~~~~~~--~vvLvrQyR-~~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~  119 (191)
T PRK15009         46 NGATIL-LYNAKKK--TVVLIRQFR-VATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELY  119 (191)
T ss_pred             CEEEEE-EEECCCC--EEEEEEccc-ccccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEE
Confidence            344434 4443344  788876533 222      12247899999996 4 6999999999999999999999998877


Q ss_pred             ccccCCceEEEEEEEEEcCCCCCC-CCCChhhhhcceecChhhhhcc
Q 023911          157 PFLSKHLLRVVPVIGILSNKKAFT-PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       157 ~~~~~~~~~V~p~v~~l~~~~~~~-~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +....+...++.|++......... ...+++|..+++|+|++++.+.
T Consensus       120 ~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~  166 (191)
T PRK15009        120 MSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM  166 (191)
T ss_pred             cCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence            666667778899998864321111 1346788899999999998765

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.40  E-value=4.1e-12  Score=107.45  Aligned_cols=91  Identities=20%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      ++||+++..      ..|.||||++|+|| |+.+||+||++||||+.+..++.++.+...........+.|+|.+...  
T Consensus        36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~--  106 (156)
T TIGR02705        36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL--  106 (156)
T ss_pred             EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence            688887653      23999999999999 999999999999999999999999987665544555667777877632  


Q ss_pred             CCCCCChhhhhcce-ecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVF-DAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~-wvpl~ell~~  202 (275)
                       .  .. +|..++. +++++++.+.
T Consensus       107 -~--~~-~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705       107 -E--SK-DDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             -c--cC-CCceeeEeEEEHHHHHHH
Confidence             1  12 4545555 7898888664

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.40  E-value=6.3e-12  Score=101.64  Aligned_cols=58  Identities=26%  Similarity=0.387  Sum_probs=45.3

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL  147 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~  147 (275)
                      ..+||+|+..+  +   .+||.+|+..  ..+|.|+||||++|+|| ++.+||.||+.||+|+...
T Consensus         4 ~~~av~vl~~~--~---~~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           4 LPVVVALLPVD--D---GLLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD   61 (118)
T ss_pred             cEEEEEEEEEC--C---CEEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence            34555554332  3   3677777653  46899999999999999 9999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.38  E-value=5.1e-12  Score=103.32  Aligned_cols=99  Identities=16%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             CceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce-EEEEEecccccCCceEEEEEEEEEc
Q 023911           96 GDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV-EVVTVLEPFLSKHLLRVVPVIGILS  174 (275)
Q Consensus        96 g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~-~~lg~l~~~~~~~~~~V~p~v~~l~  174 (275)
                      +.++|++.+...      +.|.||||++|+|| ++.+||+||++||||+..... ..++............++.+++.+.
T Consensus        12 ~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   84 (126)
T cd04663          12 EVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEVD   84 (126)
T ss_pred             ceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEec
Confidence            346777766543      34999999999999 999999999999999986221 1222222221112223444444442


Q ss_pred             ----CCCCCCCCCChhhhhcceecChhhhhc
Q 023911          175 ----NKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       175 ----~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                          +.....+..+..+.-.++|+|++++.+
T Consensus        85 ~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~  115 (126)
T cd04663          85 QDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             CCCcccccCcccCCCCceEEEEEEccccccc
Confidence                111111222334445677999999843

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.37  E-value=5.7e-12  Score=100.23  Aligned_cols=112  Identities=25%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHH-HHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGD-TATREAKEEIGLDPL--LVEVVTVLEPFLSK  161 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~e-aAlRE~~EEtGL~~~--~~~~lg~l~~~~~~  161 (275)
                      ++.+++.....  .+|++++|....    |.|+||||++|.+| ++.+ ||+||++||||+...  ....++.+......
T Consensus        13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T COG0494          13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD   85 (161)
T ss_pred             eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence            44444444222  389999998743    69999999999999 5577 999999999999888  67777776654432


Q ss_pred             Cc-----eEEEEEEEEEcCCCCCCCCCC---hhhhhcceecChhhhhccC
Q 023911          162 HL-----LRVVPVIGILSNKKAFTPTPN---PAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~-----~~V~p~v~~l~~~~~~~~~~~---~~EV~~v~wvpl~ell~~~  203 (275)
                      ..     .....+..............+   ..|...+.|+++.++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  135 (161)
T COG0494          86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV  135 (161)
T ss_pred             cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence            21     112222222211111111111   3578889999998877654

>PLN03143 nudix hydrolase; Provisional

Probab=99.35  E-value=8.1e-12  Score=115.24  Aligned_cols=79  Identities=24%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEc
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILS  174 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~  174 (275)
                      +++.+|+|+++... ....-.|+||||++|++++++.+||+||++||||+.+...+++.......+.++..++|..+..+
T Consensus       140 ~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~d  218 (291)
T PLN03143        140 EGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCD  218 (291)
T ss_pred             CCCEEEEEEEeEec-CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccC
Confidence            45557999988753 23344799999999986449999999999999999764333222211111233444555554443

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.30  E-value=1.9e-11  Score=106.22  Aligned_cols=46  Identities=33%  Similarity=0.405  Sum_probs=41.3

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP  146 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~  146 (275)
                      ++.++||+++|+.     .|+|+||||++|++| ++.+||+||+.||||+..
T Consensus        46 ~~~l~vLl~~r~~-----~g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          46 KPILQFVAIKRPD-----SGEWAIPGGMVDPGE-KISATLKREFGEEALNSL   91 (186)
T ss_pred             CCeeEEEEEEeCC-----CCcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence            5578999999965     589999999999999 999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.24  E-value=6.9e-11  Score=102.00  Aligned_cols=105  Identities=28%  Similarity=0.338  Sum_probs=73.5

Q ss_pred             cCCceEEEEEEeCCCCCCCCCcE--EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEecccccCCceEEEEE
Q 023911           94 DAGDLRVILTKRSSRMSTHSGEI--SLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFLSKHLLRVVPV  169 (275)
Q Consensus        94 ~~g~~~VLL~rRs~~l~~~~G~w--sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~~~~~~~V~p~  169 (275)
                      .+|+++|+|++.=   |.--|.+  +||.|.+|.|| |+.+||+||++||||+.-..  ......+++-++.....+..+
T Consensus        84 ~dG~~~ivL~kQf---RpP~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v  159 (225)
T KOG3041|consen   84 SDGKPYIVLVKQF---RPPTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVV  159 (225)
T ss_pred             cCCcEEEEEEEee---cCCCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEE
Confidence            4788999999853   3345554  57999999999 99999999999999997332  234555666565555444443


Q ss_pred             EEEEcCCCCCC--CCCChhhhhcceecChhhhhcc
Q 023911          170 IGILSNKKAFT--PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       170 v~~l~~~~~~~--~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      -...+..+...  ..++..|..+++-+|+++|.+.
T Consensus       160 ~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  160 DIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             EecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            32222222222  3567789999999999998764

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.21  E-value=2.8e-11  Score=110.18  Aligned_cols=111  Identities=20%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      +..-.-+|++++.++  +  ++||.+|..+   ++|.++.-.|.||+|| |+++|..||++||+||.+.++++++..++-
T Consensus       140 fPR~dP~vIv~v~~~--~--~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~Gi~V~~vrY~~SQPWP  211 (279)
T COG2816         140 FPRIDPCVIVAVIRG--D--EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVGIKVKNVRYVGSQPWP  211 (279)
T ss_pred             CCCCCCeEEEEEecC--C--ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhCeEEeeeeEEeccCCC
Confidence            333445666666553  3  4888887764   4999999999999999 999999999999999999999999988766


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +..+.  +.-|.+.....   .+++|..|++++.|+..++.+..
T Consensus       212 fP~SL--Migf~aey~sg---eI~~d~~Eleda~WFs~~evl~~  250 (279)
T COG2816         212 FPHSL--MLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA  250 (279)
T ss_pred             Cchhh--hhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence            65443  44455665543   25778899999999999995544

>PLN02839 nudix hydrolase

Probab=99.17  E-value=2.2e-10  Score=108.05  Aligned_cols=123  Identities=23%  Similarity=0.201  Sum_probs=91.1

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEE-cCCccCCCCCCCHHHHHHHHHHHHhCCCCc---ceEEEEE
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEIS-LPGGKAEEGDRDDGDTATREAKEEIGLDPL---LVEVVTV  154 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~ws-fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~---~~~~lg~  154 (275)
                      ++.+..+|.+--+...+|+.++++.||+.++..+||.|. ..||.+..|| ++.+|++||++||.||+..   .+.-.|.
T Consensus       199 fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G~  277 (372)
T PLN02839        199 FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVGA  277 (372)
T ss_pred             cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeEE
Confidence            356677788755543467779999999999999999997 5899999999 9999999999999999865   4555666


Q ss_pred             eccccc-CCce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          155 LEPFLS-KHLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       155 l~~~~~-~~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.+... ..++ .-.-|+..+.-+..+.++++.+||+++.+++++++.+.
T Consensus       278 VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~  327 (372)
T PLN02839        278 VSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANV  327 (372)
T ss_pred             EEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence            655431 1121 11122333332345667888999999999999999754

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.17  E-value=1.2e-11  Score=113.34  Aligned_cols=113  Identities=18%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF-  158 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~-  158 (275)
                      ....-.|+++|.+. +|  ..+|..|.  ++.-+|.|+.++|.+|+|| |++|||+||++||+|++++.+.+....++- 
T Consensus       184 Pr~dPvVIm~li~~-d~--~~~LL~R~--~r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~  257 (345)
T KOG3084|consen  184 PRTDPVVIMLLIDH-DG--KHALLGRQ--KRYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPL  257 (345)
T ss_pred             cCCCCeEEEEEEcC-CC--CEeeeecc--cCCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCC
Confidence            33455677777774 45  45556664  3556899999999999999 999999999999999999999988777655 


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChh-hhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPA-EVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~-EV~~v~wvpl~ell~~  202 (275)
                      +..+.+.-..-++..+    .....|.+ |..+..|+.-+++.+.
T Consensus       258 ~p~SLMIgc~ala~~~----~~I~vd~dlEleDaqwF~r~ev~~a  298 (345)
T KOG3084|consen  258 MPQSLMIGCLALAKLN----GKISVDKDLELEDAQWFDREEVKSA  298 (345)
T ss_pred             CchHHHHHHHHHHhhC----CccccCcchhhhhcccccHHHHHHH
Confidence            2222111011112222    13356777 9999999999988764

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.01  E-value=9.2e-10  Score=93.52  Aligned_cols=116  Identities=22%  Similarity=0.309  Sum_probs=86.1

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc---
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF---  158 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~---  158 (275)
                      +.|.-+.||+ .+|  ++|++||+..++.|||.|.- -.||--+|| +..+||+|-+.+|+||.+.....+..++.+   
T Consensus        33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr  108 (185)
T COG1443          33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR  108 (185)
T ss_pred             HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence            5566677787 567  89999999999999999975 357777999 999999999999999998854433333333   


Q ss_pred             cc-CCc---eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          159 LS-KHL---LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       159 ~~-~~~---~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      .. ..+   ..|.|+++.-...   .+.+|++||.+..|+..++|.+.-..
T Consensus       109 A~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~~~  156 (185)
T COG1443         109 AADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMVDA  156 (185)
T ss_pred             ccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhhcC
Confidence            21 122   2466665433321   35679999999999999999876543

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.96  E-value=2.5e-09  Score=88.30  Aligned_cols=118  Identities=26%  Similarity=0.249  Sum_probs=76.4

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      +.|..|-.|++.. ++...+|||+.=+.    ++-.|-||+|++|++| +..+||+||++||.|+.....++++.+..+.
T Consensus         7 G~r~vagCi~~r~-~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~   80 (145)
T KOG2839|consen    7 GFRLVAGCICYRS-DKEKIEVLLVSSSK----KPHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL   80 (145)
T ss_pred             CcEEEEEeeeeee-cCcceEEEEEecCC----CCCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence            3455555555444 23357899997554    3556999999999999 9999999999999999988888666665554


Q ss_pred             cC-CceEEEEEEEEEcCCCCCCCCC-ChhhhhcceecChhhhhccC
Q 023911          160 SK-HLLRVVPVIGILSNKKAFTPTP-NPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~~-~~~~V~p~v~~l~~~~~~~~~~-~~~EV~~v~wvpl~ell~~~  203 (275)
                      +. +...+..++..+...+.+..-+ ...|..+..|+.+++..+.-
T Consensus        81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~  126 (145)
T KOG2839|consen   81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELC  126 (145)
T ss_pred             ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence            32 2222333333333222222111 12347788999998876643

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.93  E-value=1.8e-08  Score=79.03  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      ++||.||... +.++|.|+||||.++.++ +..++..||+.||.++   ....++.+.+.+++....+++|.+.+.... 
T Consensus        15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~-   88 (118)
T cd03431          15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL-   88 (118)
T ss_pred             eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence            8999999754 689999999999999888 8888888999999875   223356666777777777888877654310 


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                             .+..++.|++++++.+.
T Consensus        89 -------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          89 -------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             -------cCccccEEccHHHHhhC
Confidence                   23456789999988653

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=3e-08  Score=91.06  Aligned_cols=120  Identities=23%  Similarity=0.268  Sum_probs=83.7

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      ..+++|...+.+- ++  +|++++-....-...|.|-+|+|+++++| ++.++|+||++||||++....+++..-.....
T Consensus       113 sh~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla~r~~H~~  188 (295)
T KOG0648|consen  113 SHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLAFRRAHNA  188 (295)
T ss_pred             hhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHHHHhhhcc
Confidence            4567777777763 44  78887654444467899999999999999 99999999999999998776665533222211


Q ss_pred             CCc--eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          161 KHL--LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       161 ~~~--~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                      ...  ..-..+++.+.. ..+....+..|+.+..|+|+++..+....
T Consensus       189 ~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~  234 (295)
T KOG0648|consen  189 TFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPLV  234 (295)
T ss_pred             hhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhccccc
Confidence            111  111223344443 45666778889999999999988776543

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=98.17  E-value=4e-06  Score=75.07  Aligned_cols=122  Identities=23%  Similarity=0.220  Sum_probs=87.7

Q ss_pred             CCCeEEEEEEEE--eecCCceEEEEEEeCCCCCCCCCcEE-cCCccCCCCCCCHHHHHHHHHHHHhCCCCcc---eEEEE
Q 023911           80 RPKKAAVLICLF--EGDAGDLRVILTKRSSRMSTHSGEIS-LPGGKAEEGDRDDGDTATREAKEEIGLDPLL---VEVVT  153 (275)
Q Consensus        80 ~~r~aAVlv~L~--~~~~g~~~VLL~rRs~~l~~~~G~ws-fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~---~~~lg  153 (275)
                      +-+..+|.|--+  ....|.+++.+.|||.++.+|||.|. .-||.+--|. ...+||+.|..||..|+.+.   +.-.|
T Consensus       128 Gv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~Nlv~~G  206 (306)
T KOG4313|consen  128 GVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVKNLVSAG  206 (306)
T ss_pred             eEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHhcceecc
Confidence            445556665222  22346789999999999999999997 4789999999 99999999999999998743   33345


Q ss_pred             Eecccc--cCCce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          154 VLEPFL--SKHLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       154 ~l~~~~--~~~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.+.+.  +.+++ --.-||+.+.-...+.+++|..||++.--+++.+-.+.
T Consensus       207 ~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~  258 (306)
T KOG4313|consen  207 CVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVER  258 (306)
T ss_pred             eeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHH
Confidence            554442  22221 12346666655556778899999999999999877653

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.13  E-value=4.4e-06  Score=66.17  Aligned_cols=96  Identities=25%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             cCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEE
Q 023911           94 DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGIL  173 (275)
Q Consensus        94 ~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l  173 (275)
                      .+|  ++||.||... +.+.|.|+||.--.+..+ + .+.+.+.+.+..|+.....+.++.+.+.+++....+++|.+.+
T Consensus         7 ~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~   81 (114)
T PF14815_consen    7 SQG--RVLLEKRPEK-GLLAGLWEFPLIESDEED-D-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEV   81 (114)
T ss_dssp             TTS--EEEEEE--SS-STTTT-EE--EEE-SSS--C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEE
T ss_pred             eCC--EEEEEECCCC-ChhhcCcccCEeCccCCC-C-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEe
Confidence            456  8999999864 689999999997777433 3 4545555667788876666678888888898888899999888


Q ss_pred             cCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          174 SNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      .....       .+-....|++++++.+
T Consensus        82 ~~~~~-------~~~~~~~W~~~~~l~~  102 (114)
T PF14815_consen   82 SADPP-------AEPEEGQWVSLEELDQ  102 (114)
T ss_dssp             E-SS-----------TTEEEEEGGGGGG
T ss_pred             cCCCC-------CCCCCcEEEEHHHHhh
Confidence            75321       1457889999999875

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.89  E-value=1.8e-05  Score=68.94  Aligned_cols=116  Identities=23%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEE-----cC----CccCCCCCCCHHHHHHHHHHHHhCCCCcc----
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEIS-----LP----GGKAEEGDRDDGDTATREAKEEIGLDPLL----  148 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~ws-----fP----GG~vE~gE~s~~eaAlRE~~EEtGL~~~~----  148 (275)
                      -+.|.-|.+|+. ++  ++||++||..+-++||.|.     -|    |+-.+........||.|-+.=|+||+...    
T Consensus        51 LHRaFSVFlFns-~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pe  127 (225)
T KOG0142|consen   51 LHRAFSVFLFNS-KN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPE  127 (225)
T ss_pred             hhheeeEEEecC-cc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHH
Confidence            355666677874 55  7999999999888999883     23    33322222246789999999999997554    


Q ss_pred             -eEEEEEecccccC---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          149 -VEVVTVLEPFLSK---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       149 -~~~lg~l~~~~~~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       +.+++.+.+....   .|.+=.-|+-++..  ...+++|++||+++.||..++|...
T Consensus       128 e~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel  183 (225)
T KOG0142|consen  128 EFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL  183 (225)
T ss_pred             HcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence             4566666544322   33332233323222  3456789999999999999998664

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=97.86  E-value=3.4e-05  Score=62.75  Aligned_cols=62  Identities=32%  Similarity=0.452  Sum_probs=46.6

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCC--CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL  147 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~--l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~  147 (275)
                      .|+|++  +...+|.+.|||..-.--  .+..-|-|++|.|....|| ++..+|+||.-||+||.++
T Consensus         5 SAGvLl--YR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd   68 (161)
T COG4119           5 SAGVLL--YRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD   68 (161)
T ss_pred             cceeEE--EEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence            345544  454578888888864321  1223568999999999999 9999999999999999764

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.00012  Score=64.81  Aligned_cols=40  Identities=35%  Similarity=0.553  Sum_probs=36.6

Q ss_pred             eEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhC
Q 023911           98 LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG  143 (275)
Q Consensus        98 ~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtG  143 (275)
                      ++++.++|..     .|+|++|||.+|+|| .+-+|..||..||.-
T Consensus       139 le~vavkr~d-----~~~WAiPGGmvdpGE-~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  139 LEFVAVKRPD-----NGEWAIPGGMVDPGE-KVSATLKREFGEEAM  178 (275)
T ss_pred             eEEEEEecCC-----CCcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence            7888899876     799999999999999 899999999999964

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.98  E-value=0.0051  Score=58.62  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +++|.||... +.+.|.|+||+.  +. +     ..+++..|+.|+.......++.+.+.+++....++++.+.+.....
T Consensus       243 ~~~l~~r~~~-gl~~gl~~fP~~--~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~  313 (350)
T PRK10880        243 EVWLEQRPPS-GLWGGLFCFPQF--AD-E-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG  313 (350)
T ss_pred             EEEEEECCcc-ChhhccccCCCC--cc-h-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc
Confidence            7999999854 579999999973  32 2     1245666888886433333555666667666667777655432110


Q ss_pred             CCCCCChhhhhcceecChhhhhc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                         ..+   .....|++++++.+
T Consensus       314 ---~~~---~~~~~w~~~~~~~~  330 (350)
T PRK10880        314 ---CMD---EGNGLWYNLAQPPS  330 (350)
T ss_pred             ---ccC---CcCCeEechHHhcc
Confidence               011   12335999888765

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=96.17  E-value=0.055  Score=47.16  Aligned_cols=58  Identities=21%  Similarity=0.397  Sum_probs=40.8

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP  146 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~  146 (275)
                      .|+..-.|+|+. ..+-++|||.+...+      .+-+|||+..+|| +..++..|.+.+-+|...
T Consensus        42 mRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   42 MRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             SEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred             CceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence            355555555565 467789999997643      5999999999999 899999999999999863

...

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.06  E-value=0.06  Score=45.83  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             EEEEEEeCCCCC--CCCCcEEc-CCccCCCCCC-CHHHH-----HHHHHHHHhCCC---CcceEEEEEecccccCCc-eE
Q 023911           99 RVILTKRSSRMS--THSGEISL-PGGKAEEGDR-DDGDT-----ATREAKEEIGLD---PLLVEVVTVLEPFLSKHL-LR  165 (275)
Q Consensus        99 ~VLL~rRs~~l~--~~~G~wsf-PGG~vE~gE~-s~~ea-----AlRE~~EEtGL~---~~~~~~lg~l~~~~~~~~-~~  165 (275)
                      +||+..|-...+  ..-|+.++ -|||+..+|. +..+.     +-||+.||+++.   ...++.+|-+..-...-+ .+
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH  152 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH  152 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence            899999976432  22356776 5999988762 22322     669999999998   455667776654332222 22


Q ss_pred             EE-EEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          166 VV-PVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       166 V~-p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      +- .|.+.+.. ..+  .....+.-++.|+.++++.+
T Consensus       153 iG~lf~~~~k~-ndv--evKEkd~~~~kwik~~ele~  186 (203)
T COG4112         153 IGALFLGRGKF-NDV--EVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             EEEEEEeeccc-cce--eeeecceeeeeeeeHHHHHH
Confidence            21 12222221 111  12334556788999998875

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=94.81  E-value=0.0088  Score=55.96  Aligned_cols=96  Identities=25%  Similarity=0.291  Sum_probs=55.7

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceE--EEEEecccccCCceEEEEEEE-EEcC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVE--VVTVLEPFLSKHLLRVVPVIG-ILSN  175 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~--~lg~l~~~~~~~~~~V~p~v~-~l~~  175 (275)
                      ++||++-..     +.-|+||-|++...| +..+||+||+.||+|.+....-  ..+ ++...  .+-.+..|+- -+..
T Consensus        96 r~llv~g~q-----a~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql~~~e~-Ie~nI--~dq~~~~fIi~gvs~  166 (348)
T KOG2937|consen   96 RCLLVKGWQ-----ASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQLQDNEG-IETNI--RDQLVRLFIINGVSE  166 (348)
T ss_pred             hhheeecee-----cccccccCccccccc-hhhhcchhcccchhhcCHHHHhccccC-cccch--hhceeeeeeecccee
Confidence            566665322     334999999999988 8899999999999999865421  111 01001  1111222221 0111


Q ss_pred             CCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          176 KKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       176 ~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      ...+.++. -.|++.+.|.-++++....+
T Consensus       167 d~~f~~~v-~~eis~ihW~~l~~l~~t~~  194 (348)
T KOG2937|consen  167 DTNFNPRV-RKEISKIHWHYLDHLVPTDK  194 (348)
T ss_pred             eeecchhh-hccccceeeeehhhhccccc
Confidence            11222222 25888999999999865543

>PRK13910 DNA glycosylase MutY; Provisional

Probab=89.64  E-value=1.7  Score=40.44  Aligned_cols=70  Identities=10%  Similarity=0.096  Sum_probs=42.8

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +++|.||+  .+.|.|.|+||+.  +  + .            .+...   ..++.+.+.+++....++++.+.+...  
T Consensus       198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~~--  253 (289)
T PRK13910        198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKDL--  253 (289)
T ss_pred             EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEeccC--
Confidence            79999995  3589999999973  2  1 1            11111   124555566666666777776654310  


Q ss_pred             CCCCCChhhhhcceecChhhhhc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                           .    ....|++++++.+
T Consensus       254 -----~----~~~~w~~~~~~~~  267 (289)
T PRK13910        254 -----K----NPIRFYSLKDLET  267 (289)
T ss_pred             -----C----ccceEecHHHhhh
Confidence                 1    2347999888754

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=89.18  E-value=1.1  Score=42.67  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=56.0

Q ss_pred             CCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce
Q 023911           70 TPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV  149 (275)
Q Consensus        70 ~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~  149 (275)
                      .|++......+ ++.+..+++..  +|  .++|.+|... +.+.|.|+||....+.+        +.+..-+.|+..   
T Consensus       224 ~P~k~~k~~~~-~~~~~~~~~~~--~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~---  286 (342)
T COG1194         224 YPVKKPKKKLP-RRFAAFLILNR--DG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA---  286 (342)
T ss_pred             CCCcCcccccc-hheeeEEEEcc--Cc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---
Confidence            44433333333 44444443332  44  7899888854 57899999998765441        122223344433   


Q ss_pred             EEEEEecccccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          150 EVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       150 ~~lg~l~~~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      +.++.+.+.+++....+. +.+....        . ..  ...|++++++..
T Consensus       287 ~~~~~~~H~fth~~l~i~-~~a~~~~--------~-~~--~~~w~~~~~~~~  326 (342)
T COG1194         287 EPLGAFRHTFTHFRLTIE-LRASASL--------V-LS--DGRWYNLSDLES  326 (342)
T ss_pred             ccccceeeeeeEEEEEEE-EEeeccc--------C-CC--Cceecccccccc
Confidence            445666666666555555 3332211        1 11  678988887653

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=88.20  E-value=1  Score=42.01  Aligned_cols=85  Identities=19%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             EcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccCCceEEEEEEEEEcCCCC---CCCCCChhhhhcc
Q 023911          117 SLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSKHLLRVVPVIGILSNKKA---FTPTPNPAEVEEV  191 (275)
Q Consensus       117 sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~---~~~~~~~~EV~~v  191 (275)
                      ++-.|.++..= |..+-|.||..||+|++..  .++.+..+-+-...++-.-+-|.+.+.+...   .--.-+++|..++
T Consensus       287 ELcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv  365 (405)
T KOG4432|consen  287 ELCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV  365 (405)
T ss_pred             eeecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence            34467777754 7789999999999998654  4444444433333444333444444443221   1112356788999


Q ss_pred             eecChhhhhcc
Q 023911          192 FDAPLEMFIKD  202 (275)
Q Consensus       192 ~wvpl~ell~~  202 (275)
                      ..++++++...
T Consensus       366 v~lsle~a~~~  376 (405)
T KOG4432|consen  366 VRLSLEDAPSL  376 (405)
T ss_pred             EEechhhhhHH
Confidence            99999987653

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=87.68  E-value=1.7  Score=37.34  Aligned_cols=54  Identities=22%  Similarity=0.421  Sum_probs=39.1

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG  143 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtG  143 (275)
                      |+..-.|+|+. +..-++|||.+=..+      ..-+|||..++|| +-.+...|-+-|-+|
T Consensus        69 Rrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   69 RRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLG  122 (221)
T ss_pred             hheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhc
Confidence            44444444444 344468888764432      3679999999999 889999999999999

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=87.06  E-value=3  Score=38.54  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=18.5

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCc
Q 023911           99 RVILTKRSSRMSTHSGEISLPGG  121 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG  121 (275)
                      ++|+.+|... +.+.|.|+||+.
T Consensus       240 ~~~~~~r~~~-~~~~gl~~~p~~  261 (275)
T TIGR01084       240 EVLLEQRPEK-GLWGGLYCFPQF  261 (275)
T ss_pred             eEEEEeCCCC-chhhccccCCCC
Confidence            7999999754 578999999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=84.19  E-value=1.9  Score=40.30  Aligned_cols=59  Identities=15%  Similarity=0.115  Sum_probs=40.4

Q ss_pred             EEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc--cCCceEEEEEEEEEcC
Q 023911          116 ISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL--SKHLLRVVPVIGILSN  175 (275)
Q Consensus       116 wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~--~~~~~~V~p~v~~l~~  175 (275)
                      +++-||.+|.. .++.+.|..|+.||.|..++.-.++..+....  ..++...+.|.|.+.+
T Consensus        81 ielc~g~idke-~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen   81 IELCAGLIDKE-LSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE  141 (405)
T ss_pred             eeeeccccccc-cCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence            35679999986 49999999999999999766554444443332  2233445666666654

>PF14443 DBC1: DBC1

Probab=81.60  E-value=1.7  Score=35.53  Aligned_cols=51  Identities=24%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             EEEEEEeCCCCCCCCCcEE--cCCccCCCCCCCHHHHHHHHHHHHhCCCCcce
Q 023911           99 RVILTKRSSRMSTHSGEIS--LPGGKAEEGDRDDGDTATREAKEEIGLDPLLV  149 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~ws--fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~  149 (275)
                      ++|+.+|....---.|.|+  +=||-.+.+...+..||+|=++|-|||+.+.-
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~C   61 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNC   61 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhc
Confidence            4455554432222356665  34666666565789999999999999997753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
1nqy_A	194	The Structure Of A Coa Pyrophosphatase From D. Radi		1e-07

>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++AAVL+ L      D RV+LT RSS + TH G+I+ PGG  + G+      A REA+EE
Sbjct: 34  RRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT-QAALREAQEE 90
Query: 142 IGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           +                 +     V PV+G ++ +   T    P EV ++    L     
Sbjct: 91  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTP-EVAQIITPTLAELRA 149
Query: 202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
               R+      G +  L    Y Y  +   IWG+TA +L
Sbjct: 150 VPLVRERRTLPDGTEVPL----YRYPWRGLDIWGMTARVL 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-61
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	5e-08
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-07
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-06
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-06
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	2e-06
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	4e-06
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	9e-06
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-05
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-05
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-05
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	2e-05
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	2e-05
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-05
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	3e-05
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	3e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	3e-05
3f13_A	163	Putative nudix hydrolase family member; structural	4e-05
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	5e-05
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	6e-05
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	8e-05
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-04
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-04
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-04
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-04
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-04
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-04
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	2e-04
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	3e-04
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	5e-04
2b06_A	155	MUTT/nudix family protein; structural genomics, P	5e-04
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	6e-04

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score =  191 bits (487), Expect = 3e-61
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 76  PERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTAT 135
            E    ++AAVL+ L      D RV+LT RSS + TH G+I+ PGG  + G+      A 
Sbjct: 28  LELPHYRRAAVLVALTRE--ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAAL 84

Query: 136 REAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAP 195
           REA+EE+ LDP  V ++  L+   +     V PV+G ++  +A        EV ++    
Sbjct: 85  REAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIA-PEALDTLRVTPEVAQIITPT 143

Query: 196 LEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIR 243
           L         R+      G +  L+ + +        IWG+TA +L  
Sbjct: 144 LAELRAVPLVRERRTLPDGTEVPLYRYPWR----GLDIWGMTARVLHD 187

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} Length = 232

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 21/92 (22%), Positives = 36/92 (39%)

Query: 80  RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
             +KAA L+ + +G   D+ V++ +R+  M    G ++ PGG A+  D +    A     
Sbjct: 6   DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPV 65

Query: 140 EEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIG 171
                D   + V  + E       L  V    
Sbjct: 66  CAEDDDDPALAVTALRETAEEIGWLLAVRDGE 97

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 75  DPERF-RPKKAAVLICLF----EGDAGDLRVILTKRS-----SRMSTHSGEISLPGGKAE 124
           + + F  P      + L           L ++L KRS      + +   G+ ++PGG  +
Sbjct: 18  NAKEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVD 77

Query: 125 EGDRDDGDTATREAKEEIGLDPLLVEVVTV 154
           E +  +   A RE +EE  L  + +    V
Sbjct: 78  ENESAE-QAAERELEEETSLTDIPLIPFGV 106

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 9/164 (5%)

Query: 74  KDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
           K         A       +     + V +  R         + S P GK E+ +      
Sbjct: 14  KAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKY-----DDWSWPKGKLEQNE-THRHA 67

Query: 134 ATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKK---AFTPTPNPAEVEE 190
           A RE  EE G    L   +  +E  LS+   +        ++ K    +   P  A+  E
Sbjct: 68  AVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAE 127

Query: 191 VFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIW 234
                     + +     +  W+  +       +  +     ++
Sbjct: 128 HLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVF 171

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 80  RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
           +P+       + +G     R++L KR  + +  +G   LPGGK +  +  +     RE +
Sbjct: 27  QPRVGCGAAIVRDG-----RILLIKR--KRAPEAGCWGLPGGKVDWLEPVE-RAVCREIE 78

Query: 140 EEIGLD---PLLVEVVTVLEPFLSKHLLRVV 167
           EE+G+      L+ VV  ++    +H +  V
Sbjct: 79  EELGIALERATLLCVVDHIDAANGEHWVAPV 109

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 75  DPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGG-KAEEGDRDDGDT 133
           DP+ F+ +   V   LF      L+V+L +RS+      G   LPGG   E  D     T
Sbjct: 14  DPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLPGGFIDETCDESLEQT 71

Query: 134 ATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVV 167
             R+  E+  + P  +E +  +           V
Sbjct: 72  VLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSV 105

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 76  PERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTAT 135
            +    ++  ++  L + D      +L K +       G+ +L GG  E G+R + +   
Sbjct: 20  FQSNAMRQRTIVCPLIQNDG---CYLLCKMADNRGVFPGQWALSGGGVEPGERIE-EALR 75

Query: 136 REAKEEIGLDPLLVEVVTVLEP 157
           RE +EE+G   +L ++      
Sbjct: 76  REIREELGEQLILSDITPWTFR 97

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 80  RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
            P  A  +I           ++L +R          ++LPGG  E G+R + + A RE +
Sbjct: 7   TPLLATDVIIRLWDGENFKGIVLIERK----YPPVGLALPGGFVEVGERVE-EAAAREMR 61

Query: 140 EEIGLDPLLVEVVTV 154
           EE GL+  L +++ V
Sbjct: 62  EETGLEVRLHKLMGV 76

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 8/117 (6%)

Query: 76  PERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTAT 135
            +    +         E      R IL  +             PGG +E  + D GDTA 
Sbjct: 20  FQSMSHQVGVAGAVFDEST----RKILVVQDRNKLK--NMWKFPGGLSEPEE-DIGDTAV 72

Query: 136 REAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPV-IGILSNKKAFTPTPNPAEVEEV 191
           RE  EE G+      V+++ +   +        + I       +FT      E    
Sbjct: 73  REVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRC 129

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158
           +V+L K         G    PGG  E  +    +   RE +EE G+    +     +   
Sbjct: 13  KVLLVKHKRL-----GVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTYGIIDE 66

Query: 159 LSKHLLRVVPVIGILSNKK 177
            +      + ++  +    
Sbjct: 67  NAVERPMPLVILEEVVKYP 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 63/394 (15%), Positives = 97/394 (24%), Gaps = 154/394 (39%)

Query: 3   SFLRKLPFSKIMDSSSTVASSK--------------TQRL--VALAQQLRLYKPPPPF-D 45
           +F+       + D   ++ S +              T RL    L++Q  + +    F +
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVE 84

Query: 46  EMEEQ-------QIQ-ETAGKVVSQVGFQESVTPIIKDPERF------RPKKAAVLI-CL 90
           E+           I+ E     +    + E    +  D + F      R +    L   L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 91  FE----------GDAG-------------------------------------------D 97
            E          G  G                                            
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 98  LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV--EV--VT 153
           L   +    +  S HS  I L     +   R       R  K +   + LLV   V    
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQNAK 257

Query: 154 VLEPFL--SKHLL--RVVPVIGILSN-----------KKAFTPTPNPAEVEEVFDAPLEM 198
               F    K LL  R   V   LS                T    P EV+ +    L+ 
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDC 313

Query: 199 FIKD-----------------ENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
             +D                 E+ RD    W          D  +  K      LT    
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW----------DN-W--KHVNCDKLTT--- 357

Query: 242 IRAASVVYQKPPAFIEQNPKFKFPTVINKDTIVP 275
           I  +S+   +P    E    F   +V      +P
Sbjct: 358 IIESSLNVLEPA---EYRKMFDRLSVFPPSAHIP 388

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 72  IIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDG 131
            +K   R       V +            I+  +  R       I  P G  ++G+    
Sbjct: 50  SVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGE-TPE 108

Query: 132 DTATREAKEEIGLDPLLVEVVTVL--EPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVE 189
             A RE +EE G    + E    +  +P LS   + +V V     + +   P P P + E
Sbjct: 109 AAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGE 168

Query: 190 --EVFDAPLE 197
             EV   P  
Sbjct: 169 FVEVISLPKN 178

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 78  RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATRE 137
           R +P +   ++ + + +    RV++  + +         S PGG  E G+      A RE
Sbjct: 5   RTQPVELVTMVMVTDPETQ--RVLVEDKVNVP--WKAGHSFPGGHVEVGEPCA-TAAIRE 59

Query: 138 AKEEIGLDPLLVEVVTVLE 156
             EE GL    V      E
Sbjct: 60  VFEETGLRLSGVTFCGTCE 78

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD-PLLVEVVTVLEP 157
           +++L +      T S   S P GK  + + +D D   RE KEEIG D    ++    +E 
Sbjct: 18  KILLVQG-----TESDSWSFPRGKISKDE-NDIDCCIREVKEEIGFDLTDYIDDNQFIER 71

Query: 158 FLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEV 191
            +     ++  + G+ S    F P     E++++
Sbjct: 72  NIQGKNYKIFLISGV-SEVFNFKPQVR-NEIDKI 103

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 75  DPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTA 134
               F+P    V   +   D     +++ +R  +        +LPGG  E  +       
Sbjct: 200 LKAPFKPNFVTVDALVIVND----HILMVQR--KAHPGKDLWALPGGFLECDETIA-QAI 252

Query: 135 TREAKEEIGLDPLLVEVVTVLEPF 158
            RE  EE  ++    ++       
Sbjct: 253 IRELFEETNINLTHEQLAIAKRCE 276

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 24/111 (21%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158
           +V+L          + ++   GG  E  +    +   REAKEE GL+  L   + +    
Sbjct: 18  KVLLHLHKK-----AKKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKK 71

Query: 159 ---LSKHLLRVVPVIGILSNKKAF---------------TPTPNPAEVEEV 191
              LS   L + P+  IL +                     +P   E + +
Sbjct: 72  SCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKIL 122

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE-P 157
             +L +RS    T++G+  LPGGK    +    +   RE  EE G+  +  ++   +   
Sbjct: 21  EFLLLRRSENSRTNAGKWDLPGGKVNPDESLK-EGVAREVWEETGITMVPGDIAGQVNFE 79

Query: 158 FLSKHLLRVV 167
              K ++ +V
Sbjct: 80  LTEKKVIAIV 89

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 74  KDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
           ++   ++ + AA +I        +  ++L +  +      G   LPGG+ E  +  + + 
Sbjct: 10  EETLTYQTRYAAYIIVS---KPENNTMVLVQAPN------GAYFLPGGEIEGTETKE-EA 59

Query: 134 ATREAKEEIGLDPLLVEVVTVLEPF 158
             RE  EE+G+   +   +   + +
Sbjct: 60  IHREVLEELGISVEIGCYLGEADEY 84

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 75  DPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTA 134
           D + ++ K+AA L    E +     V+L   S     H     +PGG  E    +    A
Sbjct: 35  DGDGYK-KRAACLCFRSESEE---EVLLVSSSR----HPDRWIVPGGGMEPE-EEPSVAA 85

Query: 135 TREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPV 169
            RE  EE G+   L  +V + E    KH   V  +
Sbjct: 86  VREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVL 120

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
            +   +F  + G++ ++L KR+       GE SL GG  ++ D    D A R   E  GL
Sbjct: 15  GIDCIIFGFNEGEISLLLLKRNF--EPAMGEWSLMGGFVQK-DESVDDAAKRVLAELTGL 71

Query: 145 DPLLVEVVTVLEPFLSKHLLRVVPV 169
           + + +E V            RVV +
Sbjct: 72  ENVYMEQVGAFGAIDRDPGERVVSI 96

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 80  RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
              + A  I           V++T          G  +LPGGKA  G+        RE +
Sbjct: 14  DLARRATAIIEMPD-----GVLVTASRG------GRYNLPGGKANRGELRS-QALIREIR 61

Query: 140 EEIGLDPLLVEVVTVLE-PFLSKHLLRVV 167
           EE GL    +  +     PF +  +   +
Sbjct: 62  EETGLRINSMLYLFDHITPFNAHKVYLCI 90

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 41  PPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRV 100
           PP   +  +   +      +                  + P        + +       V
Sbjct: 161 PPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQ----AGHV 216

Query: 101 ILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158
           ++ +R ++     G I+LPGG  ++ +    +   RE KEE  L   L  +   +   
Sbjct: 217 LMVRRQAK--PGLGLIALPGGFIKQNE-TLVEGMLRELKEETRLKVPLPVLRGSIVDS 271

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 21/156 (13%)

Query: 74  KDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMS--THSGEISLPGGKAEEGDRDDG 131
            D     P +      +   + G   ++L +          +G   +P G  E+G+ +  
Sbjct: 3   HDERTHVPVELRAAGVVLLNERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQ 59

Query: 132 DTATREAKEEIGLDPLLVEVVTVLE-PF-----LSKHLLRVVPVIGILSNKKAFTPTPNP 185
           D A REA EE GL    V+ +      F     + +H+    P  G              
Sbjct: 60  DAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQT------LAPAFT 113

Query: 186 AEVEEV----FDAPLEMFIKDENRRDEEREWMGEKF 217
            E+ E      +   +++   + R  + + +  +  
Sbjct: 114 DEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADAL 149

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 76  PERFRPKKAAVLICL-FEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTA 134
           PE  +P     ++ L +  +A  L+V+L +R           +LPGG     +  + D+ 
Sbjct: 33  PEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKG--HPFRNSWALPGGFVNRNESTE-DSV 89

Query: 135 TREAKEEIGLD---PLLVEVVTVLEPF 158
            RE KEE G+      + ++ +   P 
Sbjct: 90  LRETKEETGVVISQENIEQLHSFSRPD 116

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 94  DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVV 152
           D   +  +L + S          + P G  E G+ DD +TA R  +EE G++   + ++
Sbjct: 25  DNNAIEFLLLQASD----GIHHWTPPKGHVEPGE-DDLETALRATQEEAGIEAGQLTII 78

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 83  KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI 142
           KAA L+ ++   AG +  +L + S          + P G  + G+ D+   A RE KEE 
Sbjct: 4   KAAGLV-IYRKLAGKIEFLLLQASYP----PHHWTPPKGHVDPGE-DEWQAAIRETKEEA 57

Query: 143 GLDPLLVEVVTVLE 156
            +    + +     
Sbjct: 58  NITKEQLTIHEDCH 71

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 76  PERFRPK--KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDT 133
           P R R       + + L E D     V+L + + R     G   LP G+ E G+    + 
Sbjct: 12  PVRLRKNVCYVVLAVFLSEQD----EVLLIQEAKR--ECRGSWYLPAGRMEPGE-TIVEA 64

Query: 134 ATREAKEEIGLDPLLVEVVTVLE 156
             RE KEE GL      +++V E
Sbjct: 65  LQREVKEEAGLHCEPETLLSVEE 87

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 83  KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI 142
           +      + + D    +V+L ++  R     G    PGGK E G+    +T  RE  EE 
Sbjct: 4   QRVTNCIVVDHD----QVLLLQKPRR-----GWWVAPGGKMEAGE-SILETVKREYWEET 53

Query: 143 GLDPLLVEVVTVLE 156
           G+     E+  +  
Sbjct: 54  GITVKNPELKGIFS 67

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 112 HSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVV 167
             G    P G  E G+    + A RE  EE G+   ++  +        K + R V
Sbjct: 22  RMGFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV 76

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 31/240 (12%)

Query: 20  VASSKTQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVV------SQVGFQESVTPII 73
           + SS      +     R        D ++ +Q+Q     ++        +G        +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMSDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHL 60

Query: 74  KDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRM--------STHSGEISLPGGKAEE 125
            +         A  + LF       R+++ +RS            + S        + EE
Sbjct: 61  NENIEKGLLHRAFSVVLFNTKN---RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEE 117

Query: 126 GDRDD-GDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIG------ILSNKKA 178
            D       A R  + E+G+    +    ++   +  H  +   + G      +L  +K 
Sbjct: 118 KDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKN 177

Query: 179 FTPTPNPAEVEEV----FDAPLEMFIKDENRRDEEREWMG---EKFLLHFFDYEYENKKY 231
            T  P+P+E + +     +   E+  ++     +   W+    E+FL  ++ +  +   +
Sbjct: 178 VTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYRWWPHLDDVTPF 237

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 78  RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATR 136
            F  +   V +  + G   DL + + +RS   S   G++ ++  G              +
Sbjct: 113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADL-SLRQNLIK 171

Query: 137 EAKEEIGLDPLLVEVVTVLEPFLSKH-----LLRVVPVIGILSNKKAFTPTPNPAEVEEV 191
           E  EE  L   L      +            +      +  L+  + F P     E+ + 
Sbjct: 172 ECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADF 231

Query: 192 FDAPLE 197
              P  
Sbjct: 232 MLWPAA 237

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 26  QRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPK--- 82
           +++ ++AQ    Y     +D    QQ+++ +  ++S      + T      + F  +   
Sbjct: 10  KQIQSIAQAGLTYSKDV-YDIERFQQLRDISISMMSH----YTKTDWEVVEKLFASETGY 64

Query: 83  ---KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
              K  +   +F+ +    +++  K         G+ +LPGG A+ G     + A +E  
Sbjct: 65  QTPKVDIRAVVFQNE----KLLFVKE-----KSDGKWALPGGWADVGY-TPTEVAAKEVF 114

Query: 140 EEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPA-EVEEV 191
           EE G +    +++ + +    +       V  I    +        + E EEV
Sbjct: 115 EETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEV 167

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 78  RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATRE 137
           R +      +  + + +    RV++  R+   +      + PGG  E  +    ++  RE
Sbjct: 3   RSQLTILTNICLIEDLETQ--RVVMQYRAPENN-RWSGYAFPGGHVENDEAFA-ESVIRE 58

Query: 138 AKEEIGLDPLLVEVVTVLE 156
             EE GL     ++V +  
Sbjct: 59  IYEETGLTIQNPQLVGIKN 77

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 9/143 (6%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIG 143
            V   L        ++ + +RS   S     + +  GG  + G+    +   REA+EE+ 
Sbjct: 36  VVNAFLRNSQG---QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELN 91

Query: 144 LDPLLVEVVTVLE-PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202
           ++   +    +         L   + V  + S+    TP  NP ++        E  +  
Sbjct: 92  VEIDALSWRPLASFSPFQTTLSSFMCVYELRSDA---TPIFNPNDISGGEWLTPEHLLAR 148

Query: 203 ENRRDEEREWMGEKFLLHFFDYE 225
               +  +  + E     + + E
Sbjct: 149 IAAGEAAKGDLAELVRRCYREEE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.97
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.83
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.82
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.78
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.78
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.78
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.77
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.77
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.76
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.76
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.76
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.75
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.75
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.74
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.74
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.74
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.74
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.74
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.73
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.73
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.73
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.73
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.73
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.73
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.73
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.73
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.72
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.72
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.72
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.72
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.72
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.72
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.71
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.71
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.71
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.71
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.71
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.7
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.7
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.69
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.69
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.69
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.69
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.69
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.68
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.68
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.68
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.68
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.67
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.67
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.66
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.66
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.65
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.64
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.64
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.64
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.63
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.63
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.63
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.63
3f13_A	163	Putative nudix hydrolase family member; structural	99.63
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.63
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.61
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.6
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.59
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.58
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.57
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.55
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.53
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.53
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.51
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.5
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.48
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.33
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.92
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.81
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.62

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.97  E-value=1.1e-29  Score=217.43  Aligned_cols=162  Identities=30%  Similarity=0.435  Sum_probs=123.7

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      ..++++|++++ + .+|+++|||++|+..++.++|.|+||||++|+|| |+.+||+||++|||||+...++.++.+....
T Consensus        32 ~~~~~~~~v~i-~-~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  108 (194)
T 1nqz_A           32 HYRRAAVLVAL-T-READPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF  108 (194)
T ss_dssp             -CEEEEEEEEE-E-SSSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred             CCceEEEEEEE-e-cCCCeEEEEEEecCCCCCCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEccCcc
Confidence            34567777765 4 4565689999999877788999999999999999 9999999999999999999999999988776


Q ss_pred             cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhh-hccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhH
Q 023911          160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMF-IKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTA  238 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~el-l~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa  238 (275)
                      ...+..++.|++.+...... ...+++|+.++.|++++++ .+..++....+ +.+..+.+++|.|    +++.|||+||
T Consensus       109 ~~~~~~~~~f~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~iWg~ta  182 (194)
T 1nqz_A          109 TPVGFHVTPVLGRIAPEALD-TLRVTPEVAQIITPTLAELRAVPLVRERRTL-PDGTEVPLYRYPW----RGLDIWGMTA  182 (194)
T ss_dssp             ETTTEEEEEEEEEECGGGGG-GCCCCTTEEEEECCBHHHHHHSCCEEEEEEC-TTSCEEEEEEEEE----TTEEEEHHHH
T ss_pred             CCCCeEEEEEEEEecCCccc-cCCCccceeEEEEEEHHHhccCCCcceeEEe-cCCcEEEEEEecc----CCcEEehhHH
Confidence            66677888888887632110 2457789999999999999 88877665432 3455677888887    4799999999


Q ss_pred             HHHHHHHHHHhC
Q 023911          239 GILIRAASVVYQ  250 (275)
Q Consensus       239 ~iL~~~~~~~~~  250 (275)
                      +||.+++.++.|
T Consensus       183 ~il~~~~~~~~~  194 (194)
T 1nqz_A          183 RVLHDLLEQGPG  194 (194)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhcC
Confidence            999999987654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.83  E-value=1.1e-20  Score=163.73  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=114.7

Q ss_pred             hhHHHHHHHhccccCCCCCCchhHHHHHHhhhcccccccCcccc-cCCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEE
Q 023911           25 TQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQES-VTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILT  103 (275)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~  103 (275)
                      -++|+++||.+..|.+.+|+-+++++..+.+...+.....+... ..........+...+.+|.+++++  +|  +|||+
T Consensus         9 ~~~~~~~a~~g~~y~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~vv~~--~~--~vLLv   84 (205)
T 3q1p_A            9 VKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFASETGYQTPKVDIRAVVFQ--NE--KLLFV   84 (205)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCSSCCCEEEEEEEEEE--TT--EEEEE
T ss_pred             HHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccccCCCCCcceEEEEEEE--CC--EEEEE
Confidence            36899999999999999998888887777665554433333211 101112223345556666666665  45  89999


Q ss_pred             EeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc-----CCceEEEEEEEEEcCCCC
Q 023911          104 KRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS-----KHLLRVVPVIGILSNKKA  178 (275)
Q Consensus       104 rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~-----~~~~~V~p~v~~l~~~~~  178 (275)
                      +|..     +|.|+||||++|+|| |+.+||+||++||||+.+....+++.+.....     ........|.+.+...  
T Consensus        85 ~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  156 (205)
T 3q1p_A           85 KEKS-----DGKWALPGGWADVGY-TPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGG--  156 (205)
T ss_dssp             EC--------CCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEEE--
T ss_pred             EEcC-----CCcEECCcCccCCCC-CHHHHHHHHHHHHHCCccccceEEEEEeccccCCCCCCceEEEEEEEEEecCC--
Confidence            9873     789999999999999 99999999999999999988888888764321     1233344555655432  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .+..+ +|+.++.|+|++++.+.
T Consensus       157 -~~~~~-~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          157 -EKKTS-IETEEVEFFGENELPNL  178 (205)
T ss_dssp             -CCCCC-TTSCCEEEECTTSCCCB
T ss_pred             -ccCCC-CcceEEEEEeHHHhhhc
Confidence             23345 89999999999998654

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.82  E-value=3.1e-20  Score=161.03  Aligned_cols=163  Identities=25%  Similarity=0.240  Sum_probs=80.8

Q ss_pred             hhHHHHHHHhccccCCCCCCchhHHHHHHhhhcccccccCcccc-cCCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEE
Q 023911           25 TQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQVGFQES-VTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILT  103 (275)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~  103 (275)
                      .++|+++||.+..|....|+-+++++..+.+...+....++... ......+...+...+.+|.+++++  +|  +|||+
T Consensus        11 ~~~l~~~a~~gl~~~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~v~~vv~~--~~--~vLLv   86 (206)
T 3o8s_A           11 AVRLQALAQTGLAYGKDVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQ--ED--KILLV   86 (206)
T ss_dssp             ---------------------------------------------------------CCEEEEEEEEEE--TT--EEEEE
T ss_pred             HHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHhccCCCHHHHHHHhccccCCCCCCccEEEEEEE--CC--EEEEE
Confidence            57999999999999999999888877766555544333333211 111122233345556677666666  35  89999


Q ss_pred             EeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc---c--CCceEEEEEEEEEcCCCC
Q 023911          104 KRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---S--KHLLRVVPVIGILSNKKA  178 (275)
Q Consensus       104 rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---~--~~~~~V~p~v~~l~~~~~  178 (275)
                      +|.      .|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....   .  ........|.+.+...  
T Consensus        87 rr~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  157 (206)
T 3o8s_A           87 QEN------DGLWSLPGGWCDVDQ-SVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGG--  157 (206)
T ss_dssp             ECT------TSCEECSEEECCTTS-CHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEEEEEEEEEEE--
T ss_pred             Eec------CCeEECCeeccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCCCCceEEEEEEEEEecCC--
Confidence            987      688999999999999 9999999999999999998888888876332   1  1233345555555432  


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .+..+ +|+.++.|++++++.+.
T Consensus       158 -~~~~~-~E~~~~~w~~~~el~~l  179 (206)
T 3o8s_A          158 -EFQPN-SETVASGFFSLDDLPPL  179 (206)
T ss_dssp             -CCCCC-SSCSEEEEECTTSCCCB
T ss_pred             -eecCC-CCceEEEEEeHHHhhhc
Confidence             23344 89999999999998754

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.78  E-value=2.3e-18  Score=140.96  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      .+.+|.+++++ .+|  +|||++|+...+.++|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....+.
T Consensus         7 ~~~~v~~vi~~-~~~--~vLL~~r~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~   82 (153)
T 3grn_A            7 YIISVYALIRN-EKG--EFLLLRRSENSRTNAGKWDLPGGKVNPDE-SLKEGVAREVWEETGITMVPGDIAGQVNFELTE   82 (153)
T ss_dssp             EEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS
T ss_pred             eEEEEEEEEEc-CCC--cEEEEEEcCCCCCCCCeEECceeecCCCC-CHHHHHHhhhhhhhCcEeecceEEEEEEEecCC
Confidence            45566666665 345  89999999876788999999999999999 999999999999999999988888887766665


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....+..|.+.....   .+.++ +|+.++.|++++++.+..
T Consensus        83 ~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           83 KKVIAIVFDGGYVVA---DVKLS-YEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             CEEEEEEEEEEECCC---CCCCC-TTEEEEEEECHHHHTTCS
T ss_pred             ceEEEEEEEEEecCC---cEecC-CCcceEEEEEHHHhhhcc
Confidence            555566666665432   22333 889999999999997654

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.78  E-value=3.7e-18  Score=139.81  Aligned_cols=115  Identities=23%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCC--CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~--l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      .+.+|.+++++ .+|  +|||++|...  ...++|.|+||||++|+|| ++.+||+||++||||+.....++++.+....
T Consensus        12 ~~~~~~~vi~~-~~~--~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~   87 (159)
T 1sjy_A           12 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF   87 (159)
T ss_dssp             CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             EEEeEEEEEEe-CCC--CEEEEEecccCcCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence            34555555665 345  7999999853  3457899999999999999 9999999999999999999888888877554


Q ss_pred             cC-CceEEEEEEEEEcCCCCCCCCC-ChhhhhcceecChhhhhcc
Q 023911          160 SK-HLLRVVPVIGILSNKKAFTPTP-NPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ~~-~~~~V~p~v~~l~~~~~~~~~~-~~~EV~~v~wvpl~ell~~  202 (275)
                      +. ....++.|.+.+....  .+.+ +++|+.++.|++++++.+.
T Consensus        88 ~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           88 PDGVLILRHVWLAEPEPGQ--TLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             TTSCEEEEEEEEEEECSSC--CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             CCCceEEEEEEEEEccCCC--ccccCCCCceeEEEEecHHHHHHh
Confidence            33 3455677777765422  1344 6789999999999998764

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.78  E-value=2.4e-18  Score=144.52  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      +..+.+|.+++++ .+|  +|||++|+.....++|.|+| |||++|+|| ++.+||+||++||||+....+..++.+...
T Consensus        34 ~~~~~~~~v~i~~-~~~--~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~  109 (180)
T 2fkb_A           34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  109 (180)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CceeeEEEEEEEC-CCC--EEEEEECCCCCccCCCcEEeecCCCCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEEEec
Confidence            3445566666666 345  79999998876677999999 999999999 999999999999999988888888877654


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .......++.|++....    .+.++++|+.++.|++++++.+.
T Consensus       110 ~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T 2fkb_A          110 DKNCRVWGALFSCVSHG----PFALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             ETTEEEEEEEEEEECCC----CCCCCTTTEEEEEEECHHHHHTT
T ss_pred             CCCceEEEEEEEEecCC----CcCCChhHhheEEEecHHHHHHH
Confidence            44444455666665322    23467889999999999999764

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.77  E-value=4.6e-18  Score=137.20  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=78.4

Q ss_pred             EEEEEEeCCCCCC-CCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCC
Q 023911           99 RVILTKRSSRMST-HSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKK  177 (275)
Q Consensus        99 ~VLL~rRs~~l~~-~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~  177 (275)
                      +|||++|+..... ++|.|+||||++|+|| ++.+||+||++||||+.......++.+....+.....++.|.+.+... 
T Consensus        18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-   95 (140)
T 3gwy_A           18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEGE-SLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQ-   95 (140)
T ss_dssp             EEEEEEC---------CCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEEEECCS-
T ss_pred             EEEEEEecCCCCCCCCCeEECCCccCCCCC-CHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEEEEEEEEEecCC-
Confidence            8999999875322 7999999999999999 999999999999999999999999888776666667778888877642 


Q ss_pred             CCCCCCChhhhhcceecChhhhhccC
Q 023911          178 AFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       178 ~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                          .++++|+.++.|++++++.+..
T Consensus        96 ----~~~~~E~~~~~W~~~~el~~~~  117 (140)
T 3gwy_A           96 ----RYVLKEHIAAQWLSTREMAILD  117 (140)
T ss_dssp             ----CCCCCSSCEEEEECHHHHTTSC
T ss_pred             ----cccccccceeEeccHHHHhhCC
Confidence                2345789999999999997653

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.77  E-value=6.4e-18  Score=135.26  Aligned_cols=110  Identities=22%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE----Eeccccc
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT----VLEPFLS  160 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg----~l~~~~~  160 (275)
                      +|.+++++.++++.+|||++|+.    .+|.|+||||++|+|| ++.+||+||++||||+.+..+.+++    .......
T Consensus         5 ~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1ktg_A            5 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK   79 (138)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred             EEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCC-CHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence            34444555444456899999973    3689999999999999 9999999999999999877776653    2222223


Q ss_pred             CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .....++.|++.+...   ....+++|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~f~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~  118 (138)
T 1ktg_A           80 GKPKSVKYWLAKLNNP---DDVQLSHEHQNWKWCELEDAIKI  118 (138)
T ss_dssp             TEEEEEEEEEEEECSC---CCCCCCTTEEEEEEECHHHHHHH
T ss_pred             CCceEEEEEEEEecCC---cccCCCchhcEeEeccHHHHHHh
Confidence            3345567777777642   12346789999999999999764

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.76  E-value=3.1e-18  Score=138.97  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~  164 (275)
                      .|.++++.. +|  +|||++|... +.++|.|+||||++|+|| ++.+||+||+.||||+......+++...+..+....
T Consensus        23 ~~~~~i~~~-~~--~vLl~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   97 (153)
T 3ees_A           23 PVVAGFLRK-DG--KILVGQRPEN-NSLAGQWEFPGGKIENGE-TPEEALARELNEELGIEAEVGELKLACTHSYGDVGI   97 (153)
T ss_dssp             EEEEEEEEE-TT--EEEEEECCTT-STTTTCEECSEEECCTTC-CHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEE
T ss_pred             EEEEEEEEE-CC--EEEEEEeCCC-CCCCCeEECCceeeCCCC-CHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeE
Confidence            344444443 45  8999999876 468999999999999999 999999999999999998888888887666666665


Q ss_pred             EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .++.|.+.+...     .++++|+.++.|++++++.+.
T Consensus        98 ~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A           98 LILFYEILYWKG-----EPRAKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             EEEEEEECEEES-----CCCCSSSSEEEEECGGGGGGS
T ss_pred             EEEEEEEEECCC-----CcCCCccceEEEecHHHhhhC
Confidence            666666655432     245688999999999998764

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.76  E-value=4e-18  Score=140.84  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      ..+.+|.+++++  +|  +|||++|...  .++|.|+||||++|+|| ++.+||+||++|||||......+++.+.....
T Consensus        27 ~~~~~v~~vi~~--~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   99 (157)
T 4dyw_A           27 QPRVGCGAAIVR--DG--RILLIKRKRA--PEAGCWGLPGGKVDWLE-PVERAVCREIEEELGIALERATLLCVVDHIDA   99 (157)
T ss_dssp             CCEEEEEEEEEE--TT--EEEEEEECSS--SSTTCEECCEEECCTTC-CHHHHHHHHHHHHHSCEEESCEEEEEEEEEET
T ss_pred             CceeEEEEEEEE--CC--EEEEEEecCC--CCCCEEECCcccCCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEeecc
Confidence            345666666666  35  8999999864  37899999999999999 99999999999999999988898888876654


Q ss_pred             C--CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          161 K--HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       161 ~--~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      .  ....+..|++.+.....  ...+++|+.++.|++++++.+
T Consensus       100 ~~~~~~~~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A          100 ANGEHWVAPVYLAHAFSGEP--RVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             TTTEEEEEEEEEESEEESCC--CCSCTTTEEEEEEEETTSCCS
T ss_pred             CCCcEEEEEEEEEEEcCCCc--ccCCCCcEeEEEEECHHHccc
Confidence            2  23344556555433211  133668999999999999876

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.76  E-value=7.5e-18  Score=137.55  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc-C
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS-K  161 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~-~  161 (275)
                      +++|.+++.+  +|  +|||++|..   ..+|.|+||||++|+|| |+.+||+||++||||+......+++....... .
T Consensus         5 ~~~v~~ii~~--~~--~vLl~~r~~---~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   76 (153)
T 3shd_A            5 HVTVACVVHA--EG--KFLVVEETI---NGKALWNQPAGHLEADE-TLVEAAARELWEETGISAQPQHFIRMHQWIAPDK   76 (153)
T ss_dssp             EEEEEEEEEE--TT--EEEEEEEEE---TTEEEEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTS
T ss_pred             ceEEEEEEEe--CC--EEEEEEecC---CCCCCEECCeEEeCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEEecCCC
Confidence            4555554443  45  899999972   45789999999999999 99999999999999999998888888754433 3


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      .....+.|++.+....  ...++++|+.++.|++++++.
T Consensus        77 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~  113 (153)
T 3shd_A           77 TPFLRFLFAIELEQIC--PTQPHDSDIDCCRWVSAEEIL  113 (153)
T ss_dssp             CCEEEEEEEEECSSCC--CCCCCSTTCCEEEEECHHHHH
T ss_pred             ceEEEEEEEEEccccC--cCCCCcccceeeEEecHHHhh
Confidence            3344566777765432  235677899999999999993

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.75  E-value=5.3e-18  Score=140.69  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=84.6

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      ..+.+|.++++++++|  +|||++|+.  ..|.|.|+||||++|+|| ++.+||+||++||||+.....++++.+.....
T Consensus         8 ~~~~~v~~vi~~~~~~--~vLL~~r~~--~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   82 (161)
T 3exq_A            8 PVELVTMVMVTDPETQ--RVLVEDKVN--VPWKAGHSFPGGHVEVGE-PCATAAIREVFEETGLRLSGVTFCGTCEWFDD   82 (161)
T ss_dssp             CEEEEEEEEEBCTTTC--CEEEECCCC--CTTTCSBBCCCCBCCTTS-CHHHHHHHHHHHHHCCEESCCEEEEEEEEECS
T ss_pred             CceEEEEEEEEeCCCC--EEEEEEccC--CCCCCCEEccceecCCCC-CHHHHHHHHHHHhhCcEecCCcEEEEEecccC
Confidence            3456666666663324  899999983  468889999999999999 99999999999999999998899988876653


Q ss_pred             CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..+..+..+++.......   .+++.|+.++.|+|++++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           83 DRQHRKLGLLYRASNFTG---TLKASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             SCSSEEEEEEEEECCEES---CCCGGGTTTEEEECGGGCCTT
T ss_pred             CCCeEEEEEEEEEeccCC---ccCCCccceEEEeeHHHhhhC
Confidence            333333333333322111   245678899999999999764

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.75  E-value=4.9e-18  Score=139.28  Aligned_cols=110  Identities=22%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++ ++|  +|||++|...  .++|.|+||||++|.|| ++.+||+||++||||+.....++++.+...   ..
T Consensus        21 ~~v~~~i~~-~~~--~vLl~~r~~~--~~~~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~   91 (156)
T 3gg6_A           21 YVVLAVFLS-EQD--EVLLIQEAKR--ECRGSWYLPAGRMEPGE-TIVEALQREVKEEAGLHCEPETLLSVEERG---PS   91 (156)
T ss_dssp             EEEEEECBC-TTS--EEEEEECCCT--TSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TT
T ss_pred             EEEEEEEEe-CCC--EEEEEEecCC--CCCCEEECCeeeccCCC-CHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CC
Confidence            344444454 345  8999999853  47899999999999999 999999999999999999888888876532   23


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...+.|++.+..........+.+|+.++.|++++++.+.
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  130 (156)
T 3gg6_A           92 WVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP  130 (156)
T ss_dssp             EEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSS
T ss_pred             EEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccc
Confidence            445666666543211111235579999999999998653

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.74  E-value=2.9e-18  Score=139.92  Aligned_cols=112  Identities=21%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++ .+|  +|||++|... ...+|.|+||||++|+|| |+.+||+||++||||+....++.++.+........
T Consensus         6 ~~v~vi~~~-~~~--~vLLv~~~r~-~~~~~~w~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~   80 (145)
T 2w4e_A            6 RAVFILPVT-AQG--EAVLIRQFRY-PLRATITEIVAGGVEKGE-DLGAAAARELLEEVGGAASEWVPLPGFYPQPSISG   80 (145)
T ss_dssp             EEEEEEEEE-TTS--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCC
T ss_pred             CEEEEEEEc-CCC--EEEEEEEEec-CCCCCEEEeCCccCCCCC-CHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccC
Confidence            455555565 355  7877765332 124668999999999999 99999999999999999888887776543333334


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..++.|++......  ...++++|+.++.|+|++++.+.
T Consensus        81 ~~~~~f~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~  117 (145)
T 2w4e_A           81 VVFYPLLALGVTLG--AAQLEDTETIERVVLPLAEVYRM  117 (145)
T ss_dssp             CEEEEEEEEEEEEC----------CEEEEEEEHHHHHHH
T ss_pred             ceEEEEEEEecccC--CCCCCCCCeEEEEEEeHHHHHHH
Confidence            45667766532211  23457789999999999999764

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.74  E-value=4.9e-18  Score=137.62  Aligned_cols=93  Identities=25%  Similarity=0.288  Sum_probs=72.1

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc----eEEEEEEEEEc
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL----LRVVPVIGILS  174 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~----~~V~p~v~~l~  174 (275)
                      +|||++|.      .|.|+||||++|+|| |+.+||+||++|||||.......++.....+...+    ..++.|++...
T Consensus        16 ~vLL~~r~------~g~W~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~   88 (134)
T 3i7u_A           16 EVLLIKTP------SNVWSFPKGNIEPGE-KPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYLMKYK   88 (134)
T ss_dssp             EEEEEECT------TSCEECCEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EEEEEEeC------CCcEECCeeEecCCC-CHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEEEEEEEc
Confidence            89999985      478999999999999 99999999999999999888888887765443222    22445555544


Q ss_pred             CCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          175 NKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       175 ~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.   .+.++ +|+.++.|+|++++.+.
T Consensus        89 ~~---~~~~~-~E~~~~~W~~~~e~~~~  112 (134)
T 3i7u_A           89 EG---EPRPS-WEVKDAKFFPIKEAKKL  112 (134)
T ss_dssp             EE---CCCCC-TTSSEEEEEEHHHHHHH
T ss_pred             CC---cCcCC-hhheEEEEEEHHHHhhh
Confidence            32   23444 79999999999998764

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.74  E-value=3.1e-17  Score=135.90  Aligned_cols=114  Identities=17%  Similarity=0.199  Sum_probs=73.9

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEe-----
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVL-----  155 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l-----  155 (275)
                      .++.+|.++++.. +|  +|||++|+...+.++|.|+||||++|+|| ++.+||+||++|||||......+++..     
T Consensus        25 ~~~~~~~~~ii~~-~~--~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~  100 (165)
T 3oga_A           25 MRQRTIVCPLIQN-DG--CYLLCKMADNRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLILSDITPWTFRDDI  100 (165)
T ss_dssp             CEEEEEEEEEEEE-TT--EEEEEEECC------CCEECCCEECCTTC-CHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEE
T ss_pred             cceEEEEEEEEeC-CC--EEEEEEecCCCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeeeeeecce
Confidence            3444555555553 45  89999999877788999999999999999 999999999999999998777665421     


Q ss_pred             -cccccCCc---eE--EEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          156 -EPFLSKHL---LR--VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       156 -~~~~~~~~---~~--V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       ...+....   ..  +..|.+.....   .+.. .+|+.++.|++++++.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          101 RIKTYADGRQEEIYMIYLIFDCVSANR---DICI-NDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             EEEEC--CCEEEEEEEEEEEEEEESCC---CCCC-CTTEEEEEEECGGGGGGS
T ss_pred             eeEecCCCCceeEEEEEEEEEeeccCC---CccC-CchheeeEEccHHHHhhC
Confidence             11121111   11  22333333321   2233 379999999999999764

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.74  E-value=2.1e-17  Score=135.49  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEEeccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTVLEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~~~~  160 (275)
                      ..+|.+++++ .+|  +|||++|+..  .++|.|+||||++|+|| ++.+||+||++||||+..  .....++.+.+.++
T Consensus        18 ~~~v~~vi~~-~~~--~vLl~~r~~~--~~~g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   91 (160)
T 1rya_A           18 LVSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEES
T ss_pred             EEEEEEEEEc-CCC--EEEEEeccCC--CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEc
Confidence            3555565665 345  7999999863  46899999999999999 999999999999999985  46788887765543


Q ss_pred             CC--------ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          161 KH--------LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       161 ~~--------~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      ..        ...++.|.+.+...   .+.++++|+.++.|++++++.+...
T Consensus        92 ~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~~~  140 (160)
T 1rya_A           92 DNFSGTDFTTHYVVLGFRFRVSEE---ELLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             SBTTBSSSCEEEEEEEEEEECCGG---GCCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             ccccCCCcCcEEEEEEEEEEcCcc---ccccCCCccceEEEecHHHHhhccc
Confidence            21        33455566665432   2345678999999999999987543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.74  E-value=6.9e-18  Score=143.62  Aligned_cols=114  Identities=15%  Similarity=0.127  Sum_probs=85.9

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcce-EEEEEeccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLV-EVVTVLEPF  158 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~-~~lg~l~~~  158 (275)
                      ..+.+|.+++++ .+|  +|||++|+.....++|.|+| |||++|+|| |+.+||+||++||||+....+ .+++.+...
T Consensus        30 ~~~~~v~~~i~~-~~g--~vLl~~R~~~~~~~~g~w~~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~  105 (190)
T 1hzt_A           30 RLHLAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYR  105 (190)
T ss_dssp             -CEECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEE
T ss_pred             ceEEEEEEEEEc-CCC--EEEEEEeCCCCCCCCCcccCcccccCCCCC-CHHHHHHHHHHHHHCCCchhhheeeeeEEEE
Confidence            344566666666 355  79999998877788999999 999999999 999999999999999998887 777665433


Q ss_pred             c--c-CC--ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 L--S-KH--LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~--~-~~--~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .  . ..  ...++.|++.+..    .+.++++|+.++.|++++++.+.
T Consensus       106 ~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~  150 (190)
T 1hzt_A          106 ATDPSGIVENEVCPVFAARTTS----ALQINDDEVMDYQWCDLADVLHG  150 (190)
T ss_dssp             EECTTSCEEEEECCEEEEEBCS----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred             eeCCCCCcceEEEEEEEEecCC----CCcCCccceeeEEEecHHHHHHH
Confidence            2  1 11  2234455666543    23457789999999999999764

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.73  E-value=2.2e-17  Score=135.59  Aligned_cols=126  Identities=15%  Similarity=0.048  Sum_probs=90.4

Q ss_pred             cCCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHH-HHHHHHHHHHhC-CCC
Q 023911           69 VTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDG-DTATREAKEEIG-LDP  146 (275)
Q Consensus        69 ~~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~-eaAlRE~~EEtG-L~~  146 (275)
                      ..|+++.....+.+..+++|++.+ .+.+.+|||++|... +.++|.|+||||++|+|| ++. +||+||+.|||| +..
T Consensus         6 ~~Pvk~~k~~~~~~~~~~~vi~~~-~~~~~~vLl~~R~~~-~~~~g~w~~PgG~~e~gE-~~~~~a~~REl~EE~g~l~~   82 (155)
T 1x51_A            6 SGPRKASRKPPREESSATCVLEQP-GALGAQILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQELQRWAGPLPA   82 (155)
T ss_dssp             SCTTSSSCSCTTEEEEEEEEEEEE-CSSSEEEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHHHHHHSCCCCS
T ss_pred             hCCCcCCCCCCCeEEEEEEEEEec-CCCCCEEEEEECCCC-CCCCceecCCccccCCCC-CHHHHHHHHHHHHHhCCcce
Confidence            345544433344555666554433 211238999999864 578999999999999999 996 999999999999 988


Q ss_pred             cceEEEEEecccccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          147 LLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       147 ~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .....++.+.+.++.....++.|.+.+...   .  +...|..++.|++++++.+.
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A           83 THLRHLGEVVHTFSHIKLTYQVYGLALEGQ---T--PVTTVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             TTCEECCCBCCBCSSCEEEEEEEEEECSSC---C--CCCCCCTTEEEEEHHHHHHS
T ss_pred             eeeeecceEEEecCCccEEEEEEEEEEcCC---C--CCCCCCCccEEccHHHhhhc
Confidence            877888777666666566677777766432   1  23457788999999998753

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.73  E-value=2.3e-17  Score=132.90  Aligned_cols=110  Identities=20%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce--EEEEEecccccC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV--EVVTVLEPFLSK  161 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~--~~lg~l~~~~~~  161 (275)
                      .++.+++++ .+|  +|||++|... +.++|.|+||||++|.|| ++.+||+||++||||+.....  ..++...+..+.
T Consensus         9 ~~~~~vi~~-~~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   83 (144)
T 3r03_A            9 LVTAAALID-PDG--RVLLAQRPPG-KSLAGLWEFPGGKLEPGE-TPEAALVRELAEELGVDTRASCLAPLAFASHSYDT   83 (144)
T ss_dssp             EEEEEEEBC-TTS--CEEEEECCTT-SSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             EEEEEEEEc-CCC--EEEEEEeCCC-CCCCCcEECCCcEecCCC-CHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC
Confidence            334444454 345  7999999865 458999999999999999 999999999999999988765  444445455555


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....++.|.+.+...     .++++|+.++.|++++++.+..
T Consensus        84 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  120 (144)
T 3r03_A           84 FHLLMPLYACRSWRG-----RATAREGQTLAWVRAERLREYP  120 (144)
T ss_dssp             SEEEEEEEEECCCBS-----CCCCCSSCEEEEECGGGGGGSC
T ss_pred             eEEEEEEEEEEecCC-----ccCCCCcceEEEEeHHHhccCC
Confidence            555666666655432     2356789999999999997743

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.73  E-value=3.4e-18  Score=144.22  Aligned_cols=116  Identities=22%  Similarity=0.304  Sum_probs=87.4

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      +..+|.+++++ .+|  +|||++|... ..++|.|+||||++|+|| |+.+||+||++||||+....+..++.+......
T Consensus        40 ~~~~v~v~i~~-~~~--~vLL~~r~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~  114 (182)
T 2yvp_A           40 PVAASFVLPVT-ERG--TALLVRQYRH-PTGKFLLEVPAGKVDEGE-TPEAAARRELREEVGAEAETLIPLPSFHPQPSF  114 (182)
T ss_dssp             SCEEEEEEEBC-TTS--EEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCEECSCEEECCCBCSCTTT
T ss_pred             cCCEEEEEEEc-CCC--EEEEEEeccC-CCCCcEEEeccccCCCCc-CHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCc
Confidence            34466666665 355  8999998754 346889999999999999 999999999999999999888888876554444


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....++.|++..... ...+..+++|+.++.|+|++++.+.-
T Consensus       115 ~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~  155 (182)
T 2yvp_A          115 TAVVFHPFLALKARV-VTPPTLEEGELLESLELPLTEVYALL  155 (182)
T ss_dssp             BCCEEEEEEECSCEE-CSCCCCCTTCCEEEEEEEHHHHHHHH
T ss_pred             cccEEEEEEEecccc-CCCCCCCCCceEEEEEEEHHHHHHHH
Confidence            445667776653221 11234578899999999999998653

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.73  E-value=1.4e-17  Score=136.92  Aligned_cols=109  Identities=21%  Similarity=0.217  Sum_probs=81.1

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceE--EEEEecccccC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVE--VVTVLEPFLSK  161 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~--~lg~l~~~~~~  161 (275)
                      .++.+++++ .+|  +|||++|... +.++|.|+||||++|+|| ++.+||+||++||||+......  .++.+.+..+.
T Consensus        30 ~~~~~~i~~-~~~--~vLL~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~  104 (158)
T 3hhj_A           30 IVVACALLD-QDN--RVLLTQRPEG-KSLAGLWEFPGGKVEQGE-TPEASLIRELEEELGVHVQADNLFPLTFASHGYET  104 (158)
T ss_dssp             EEEEEEEBC-TTS--EEEEEECCCT-TSCCCCCBCCEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             EEEEEEEEe-CCC--EEEEEEeCCC-CCCCCEEECCceeecCCC-CHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC
Confidence            334444444 345  8999999865 468999999999999999 9999999999999999877653  35555555555


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ....++.|++.....     .++.+|+.++.|++++++.+.
T Consensus       105 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A          105 FHLLMPLYFCSHYKG-----VAQGREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             CEEEEEEEEESCCBS-----CCCCTTSCEEEEEEGGGGGGS
T ss_pred             cEEEEEEEEEEECCC-----ccCCccccceEEEcHHHHhhC
Confidence            555566666554331     345688999999999998764

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.73  E-value=2.5e-17  Score=129.82  Aligned_cols=104  Identities=17%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~  164 (275)
                      +|.+++++ .+|  +|||++|+.      |.|+||||++|+|| ++.+||+||++||||+.......++.+.+.......
T Consensus         4 ~~~~vi~~-~~~--~vLl~~r~~------g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   73 (126)
T 1vcd_A            4 GAGGVVFN-AKR--EVLLLRDRM------GFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE   73 (126)
T ss_dssp             EEEEEEEC-TTS--CEEEEECTT------SCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred             EEEEEEEc-CCC--EEEEEEECC------CCccCCcCcCCCCC-CHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceE
Confidence            44455555 345  799999874      78999999999999 999999999999999999888888887655544445


Q ss_pred             EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .++.|++......    ..+.+|+.++.|+|++++.+.
T Consensus        74 ~~~~~~~~~~~~~----~~~~~e~~~~~w~~~~el~~~  107 (126)
T 1vcd_A           74 REVHWFLMRGEGA----PRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEESC----CCCCTTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEcCCC----CCCCcceeeeEEcCHHHHHHh
Confidence            5666766554321    234578999999999998764

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.73  E-value=1.4e-17  Score=143.11  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=80.7

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      .+.+|.++++..+++  +|||++|..   .++|.|+||||++|+|| ++.+||+||++|||||.....++++....+...
T Consensus        25 ~~v~v~~~v~~~~~~--~vLL~~r~~---~~~g~w~lPGG~ve~gE-s~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~   98 (199)
T 3h95_A           25 HQVGVAGAVFDESTR--KILVVQDRN---KLKNMWKFPGGLSEPEE-DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNP   98 (199)
T ss_dssp             -CCEEEEEEEETTTT--EEEEEEESS---SSTTSBBCCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECC---
T ss_pred             ccceEEEEEEeCCCC--EEEEEEEcC---CCCCCEECCccccCCCC-CHHHHHHHHHHHHhCCccccceEEEEEeeecCC
Confidence            345555555554445  899999975   35899999999999999 999999999999999998877777653322211


Q ss_pred             --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                        .......+++.+... .....++++|+.++.|+|++++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~  142 (199)
T 3h95_A           99 GAFGKSDMYIICRLKPY-SFTINFCQEECLRCEWMDLNDLAKTEN  142 (199)
T ss_dssp             ------CEEEEEEEEES-CCCCCCCTTTEEEEEEEEHHHHHHCSS
T ss_pred             CCceeEEEEEEEEEcCC-CcccCCCccceeeeEEEeHHHHhhhhh
Confidence              222223344444322 233456789999999999999987543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.73  E-value=1.3e-17  Score=139.24  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++  +|  +|||++|.... .++|.|+||||++|+|| |+.+||+||++||||+ ...+..++.+........
T Consensus        35 ~~v~vii~~--~~--~vLL~~~~r~~-~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~  107 (170)
T 1v8y_A           35 PAVAVIALR--EG--RMLFVRQMRPA-VGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTD  107 (170)
T ss_dssp             CEEEEEEEE--TT--EEEEEECCBTT-TTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBC
T ss_pred             CeEEEEEEE--CC--EEEEEEEEeCC-CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccc
Confidence            355555565  45  89999876542 57899999999999999 9999999999999999 888888887754444444


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..++.|++......  ...++++|+.++.|+|++++.+.
T Consensus       108 ~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~  144 (170)
T 1v8y_A          108 EKTHVFLAENLKEV--EAHPDEDEAIEVVWMRPEEALER  144 (170)
T ss_dssp             CEEEEEEEEEEEEC--C--------CEEEEECHHHHHHH
T ss_pred             cEEEEEEEEecccc--CCCCCCCceEEEEEEEHHHHHHH
Confidence            56677776654321  22456789999999999998764

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.73  E-value=2.6e-17  Score=137.09  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEE-cCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEec-cc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEIS-LPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLE-PF  158 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~ws-fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~-~~  158 (275)
                      +.+|.+++++ .+|  +|||++|+.....++|.|+ ||||++|+|| |+.+||+||++||||+....  +..++.+. ..
T Consensus        34 ~~~v~v~i~~-~~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~  109 (171)
T 1q27_A           34 VRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSPFQ  109 (171)
T ss_dssp             CEEEEEEEEE-TTT--EEEECCSCCSSSCCCCSCCCSEEEECSSSS-CHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSS
T ss_pred             ceEEEEEEEC-CCC--eEEEEEecCCCCCCCCccccccCccccCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeccC
Confidence            5566666665 356  8999999877777899998 9999999999 99999999999999998876  46666665 22


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      ..... .++.|.+....    .+.++++|+.++.|++++++.+
T Consensus       110 ~~~~~-~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A          110 TTLSS-FMCVYELRSDA----TPIFNPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             SCCSS-EEEEEEEECCC----CCCSCTTTCSCCEEECHHHHHH
T ss_pred             CCCcc-EEEEEEEEECC----ccccCchhhheEEEecHHHHHH
Confidence            22222 56666666522    2345778999999999999974

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.72  E-value=7.8e-17  Score=132.64  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----cCCceEEEEEE
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL----SKHLLRVVPVI  170 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~----~~~~~~V~p~v  170 (275)
                      +++.++||++|+..    +|.|+||||++|+|| |+.+||+||++||||+.......++.+....    ......+..|+
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL   95 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECSEEECCSSC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEecCC----CCCEECCeeeccCCC-CHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEE
Confidence            45679999999863    688999999999999 9999999999999999998888776654322    12223344555


Q ss_pred             EEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          171 GILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       171 ~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +...+. ...+.+ .+|+.++.|++++++.+.
T Consensus        96 ~~~~~~-~~~~~~-~~E~~~~~W~~~~ea~~~  125 (155)
T 3u53_A           96 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQL  125 (155)
T ss_dssp             EEESCT-TCCCCC-CTTEEEEEEECHHHHHHH
T ss_pred             EEEecc-CCccCC-CcceeEEEEeEHHHHHHH
Confidence            655442 222333 479999999999998764

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.72  E-value=2.7e-17  Score=131.67  Aligned_cols=99  Identities=20%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEc
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILS  174 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~  174 (275)
                      +|  +|||++|+.. +.++|.|+||||++|.|| ++.+||+||++||||+.......++.+.+..+.....++.|.+...
T Consensus        19 ~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (140)
T 2rrk_A           19 DG--KILLAQRPAQ-SDQAGLWEFAGGKVEPDE-SQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDF   94 (140)
T ss_dssp             TT--EEEEEECCSS-CSCCCCEECCEEECCTTS-CHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEEEESEE
T ss_pred             CC--EEEEEEcCCC-CCCCCEEECCceecCCCC-CHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEEEEEee
Confidence            45  8999999765 457999999999999999 9999999999999999988888888876655554555666666543


Q ss_pred             CCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          175 NKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       175 ~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..     .++.+|+.++.|++++++.+.
T Consensus        95 ~~-----~~~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           95 HG-----TLQAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             EE-----CCCCSSCSCEEEECHHHHTTS
T ss_pred             CC-----CcCCCccceeEEeCHHHHhhC
Confidence            21     134578899999999998764

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.72  E-value=5.2e-17  Score=135.24  Aligned_cols=113  Identities=20%  Similarity=0.248  Sum_probs=79.9

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      .+.+|.+++++  +|  +|||++|...    +|.|+||||++|+|| ++.+||+||++||||+......+++.+......
T Consensus        22 ~~~~v~~ii~~--~~--~vLL~~r~~~----~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   92 (171)
T 3id9_A           22 MQVRVTGILIE--DE--KVLLVKQKVA----NRDWSLPGGRVENGE-TLEEAMIREMREETGLEVKIKKLLYVCDKPDAS   92 (171)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEECSST----TCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred             eEEEEEEEEEE--CC--EEEEEEEECC----CCeEECCCccCCCCC-CHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence            34555555555  35  8999999862    899999999999999 999999999999999999888888877655444


Q ss_pred             CceEEEEEEEEEcCCCCC--CCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAF--TPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~--~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .......|.+........  ...++++|+.++.|+|++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~  136 (171)
T 3id9_A           93 PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYG  136 (171)
T ss_dssp             SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGT
T ss_pred             CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCC
Confidence            444444455544322111  112467899999999999998754

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.72  E-value=2.6e-17  Score=133.91  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-  161 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-  161 (275)
                      +.+|.+++..  +|  +|||++|.... . +|.|+||||++|+|| ++.+||+||++||||+......+++.+...... 
T Consensus         8 ~~~v~~ii~~--~~--~vLl~~r~~~~-~-~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (153)
T 2b0v_A            8 NVTVAAVIEQ--DD--KYLLVEEIPRG-T-AIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASN   80 (153)
T ss_dssp             EEEEEEECEE--TT--EEEEEEECSSS-S-CCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CEEEEEEEee--CC--EEEEEEEcCCC-C-CCeEECCCcCcCCCC-CHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC
Confidence            4445444443  45  89999998653 3 889999999999999 999999999999999998888888877543332 


Q ss_pred             -CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 -HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 -~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       ....++.|.+.......  ...+.+|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~f~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           81 GTTYLRFTFSGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             TEEEEEEEEEEEEEEECT--TSCCCTTEEEEEEEEHHHHHHT
T ss_pred             CcEEEEEEEEEEeCCCCC--CCCCCCCeeeEEEecHHHHhhh
Confidence             22334556665543211  1345689999999999999874

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.72  E-value=1e-17  Score=142.39  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             ceEEEEEEeCC-----CCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-C-ceEEEEE
Q 023911           97 DLRVILTKRSS-----RMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-H-LLRVVPV  169 (275)
Q Consensus        97 ~~~VLL~rRs~-----~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-~-~~~V~p~  169 (275)
                      +.+|||++|+.     ....++|.|+||||++|+|| ++.+||+||++|||||....+..++.+...... . ......|
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~  123 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENE-SAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAF  123 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEE
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCCCCEEEEEE
Confidence            45999999975     33468999999999999999 999999999999999999999999887654322 1 2233445


Q ss_pred             EEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          170 IGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       170 v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ++.+.... .....+.+|+.++.|++++++.+.
T Consensus       124 ~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~  155 (187)
T 3i9x_A          124 YAIVPPEA-LEKRAAGDDAAEIGLFPMTEALEL  155 (187)
T ss_dssp             EEECCHHH-HHHHHHSTTTTTEEEEEHHHHTTS
T ss_pred             EEEEcCcc-cCCcCCCCceeEEEEEeHHHcccC
Confidence            55543211 111124578999999999999753

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.71  E-value=1.9e-17  Score=136.57  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc---
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF---  158 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~---  158 (275)
                      ++.+|.+++++  +|  +|||++|+.     .|.|+||||++|+|| |+.+||+||++|||||.......++.+...   
T Consensus         5 ~~~~v~~vi~~--~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   74 (159)
T 3f6a_A            5 RHFTVSVFIVC--KD--KVLLHLHKK-----AKKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKKSCD   74 (159)
T ss_dssp             SCEEEEEEEEE--TT--EEEEEECSS-----SCCEECEEEECCTTC-CHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHH
T ss_pred             ceEEEEEEEEE--CC--EEEEEEcCC-----CCeEECCccCccCCC-CHHHHHHHHHHHHhCCCceeccccccccccccc
Confidence            45566666665  35  899999874     689999999999999 999999999999999998776666432110   


Q ss_pred             -----------------c-cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          159 -----------------L-SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       159 -----------------~-~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                                       . .........|++.....   .+.++++|+.++.|+|++++.+..
T Consensus        75 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           75 LSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSF---ETSPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             HTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCS---CCCCCTTSCCCEEEECSSSSTTCS
T ss_pred             ccccccccCccccccccCCCCceEEEEEEEEEeCCC---CcCCCCCcccceEEeeHHHHhhCc
Confidence                             0 11112234556665432   234567899999999999998765

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.71  E-value=2e-17  Score=142.71  Aligned_cols=114  Identities=20%  Similarity=0.189  Sum_probs=87.3

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      +..||.|+++++  +  +|||++|... ..++|.|+||||++|+|| ++.+||+||++||||+....++.++.+......
T Consensus        48 ~~~av~vl~~~~--~--~vLLvrq~r~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  121 (198)
T 1vhz_A           48 NREAVMIVPIVD--D--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSY  121 (198)
T ss_dssp             CCCEEEEEEEET--T--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT
T ss_pred             CCCEEEEEEEEC--C--EEEEEEcccC-CCCCcEEEeCcccCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCc
Confidence            344666655652  3  8999987643 356789999999999999 999999999999999999888888887655444


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....++.|++......  ....+++|+.++.|+|++++.+.-
T Consensus       122 ~~~~~~~f~a~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~  161 (198)
T 1vhz_A          122 FSSKMNIVVAQDLYPE--SLEGDEPEPLPQVRWPLAHMMDLL  161 (198)
T ss_dssp             CCCEEEEEEEEEEEEC--CCCCCCSSCCCEEEEEGGGGGGGG
T ss_pred             cCcEEEEEEEEeCCcc--cCCCCCCceEEEEEEEHHHHHHHH
Confidence            4556777777654321  224577899999999999998753

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.71  E-value=2.7e-17  Score=134.48  Aligned_cols=113  Identities=17%  Similarity=0.100  Sum_probs=79.1

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc-
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS-  160 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~-  160 (275)
                      .+.+|.++++++..+++.||+++|+...  ++| |+||||++|+|| ++.+||+||++||||+......+++....... 
T Consensus         7 ~~~~~~~ii~~~~~~~~~vLl~~r~~~~--~~g-w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            7 TILTNICLIEDLETQRVVMQYRAPENNR--WSG-YAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEC-------CCE-EECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             cEEEEEEEEEECCCCeEEEEEEECCCCC--CCC-EeccceecCCCC-CHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            3455555556533344559999998653  788 999999999999 99999999999999999888888887665543 


Q ss_pred             CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 ~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .....++.|.+.....     .+++.|+.++.|++++++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  120 (155)
T 2b06_A           83 GGRYIVICYKATEFSG-----TLQSSEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             SCEEEEEEEEECEEEE-----CCCCBTTBEEEEEEGGGGGGSC
T ss_pred             CceEEEEEEEEEecCC-----CCCCCcceeeEEeeHHHhhhCC
Confidence            2334455555543321     2344788999999999998743

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.71  E-value=1.4e-16  Score=129.62  Aligned_cols=110  Identities=19%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce--EE--EEEeccc-c
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV--EV--VTVLEPF-L  159 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~--~~--lg~l~~~-~  159 (275)
                      +|.++++...+++.+|||++|+.     +|.|+||||++|+|| ++.+||+||++|||||.....  .+  +..++.+ +
T Consensus         7 ~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (149)
T 3son_A            7 QVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEE-AISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF   80 (149)
T ss_dssp             EEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTC-CHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred             EEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCC-CHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence            34443443233445999999986     399999999999999 999999999999999987753  11  1222211 1


Q ss_pred             ---cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          160 ---SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ---~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         ......++.|.+.+... ...+.+ ++|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~  124 (149)
T 3son_A           81 SFNKPYVVPEYCFAIDLTSC-SYQVTL-SLEHSELRWVSYESAIQL  124 (149)
T ss_dssp             CSSSCSEEEEEEEEEECTTT-GGGCCC-CTTEEEEEEECHHHHHHH
T ss_pred             ccCCceEeEEEEEEEEcCCC-CCcccC-CCceeeEEEeCHHHHHHH
Confidence               11233455666666531 112344 489999999999998754

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.70  E-value=3.5e-17  Score=140.22  Aligned_cols=115  Identities=17%  Similarity=0.108  Sum_probs=83.4

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCC----CC-CCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRM----ST-HSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEP  157 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l----~~-~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~  157 (275)
                      ..||.+++++.+++  +|||+++....    +. ++|.|+||||++| || ++.+||+||++||||+....+..++.+..
T Consensus        45 ~~av~v~~~~~~~~--~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE-~~~~aa~REl~EEtG~~~~~~~~l~~~~~  120 (191)
T 3o6z_A           45 GNGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELYM  120 (191)
T ss_dssp             CCEEEEEEEETTTT--EEEEEEEECHHHHTTTCTTCEEEECEEEECC-SS-CHHHHHHHHHHHHC-CCCSCEEEEEEEES
T ss_pred             CCEEEEEEEECCCC--EEEEEEcCCccccccCCCCCeEEEecceEeC-CC-CHHHHHHHHHHHHhCCccCcEEEEEEEEe
Confidence            34555555553345  88998875321    11 6789999999999 99 99999999999999999999999988766


Q ss_pred             cccCCceEEEEEEEEEcCCCCCC--CCCChhhhhcceecChhhhhcc
Q 023911          158 FLSKHLLRVVPVIGILSNKKAFT--PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       158 ~~~~~~~~V~p~v~~l~~~~~~~--~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ........++.|++.........  ..+ ++|+.++.|+|++++.+.
T Consensus       121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~  166 (191)
T 3o6z_A          121 SPGGVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEM  166 (191)
T ss_dssp             CTTTBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred             CCCccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence            55556667888888875421111  122 689999999999998764

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.70  E-value=5.7e-17  Score=140.88  Aligned_cols=118  Identities=19%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      .+++++++..+.++..+|||+++... ...++.|+||||++|+|| ++.+||+||++||||+....+.+++.+.......
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~  139 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFPAGLIDDGE-TPEAAALRELEEETGYKGDIAECSPAVCMDPGLS  139 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTB
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECCccccCCCC-CHHHHHHHHHHHHhCCCccceEEeccEEcCCCcc
Confidence            35555555543322347888875322 134678999999999999 9999999999999999988777766553333333


Q ss_pred             ceEEEEEEEEEcCCCC----CCCCCChhhhhcceecChhhhhcc
Q 023911          163 LLRVVPVIGILSNKKA----FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~----~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...++.|++.+.....    ....++++|+.++.|+|++++.+.
T Consensus       140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  183 (212)
T 2dsc_A          140 NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR  183 (212)
T ss_dssp             CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred             CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            4456777776543111    123567889999999999999764

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.69  E-value=1.6e-17  Score=131.08  Aligned_cols=100  Identities=20%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             cCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEE
Q 023911           94 DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGIL  173 (275)
Q Consensus        94 ~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l  173 (275)
                      .+|  +|||++|+.. +.++|.|+||||++|+|| ++.+||+||++||||+.......++.+.+..+.....++.|.+..
T Consensus        14 ~~~--~vLl~~r~~~-~~~~g~w~~PgG~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (129)
T 1mut_A           14 ENN--EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVER   89 (129)
T ss_dssp             TTT--EEEEEECSSC-CSSSCCEECCCCCSSSCS-STTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEEE
T ss_pred             cCC--EEEEEEeCCC-CCCCCeEECCccCcCCCC-CHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEEc
Confidence            345  8999999875 378999999999999999 999999999999999998877777776655555444556666665


Q ss_pred             cCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          174 SNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...     .++.+|+.++.|++++++.+.
T Consensus        90 ~~~-----~~~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           90 WEG-----EPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             CSS-----CCCCCSSCCCEEEESSSCCTT
T ss_pred             cCC-----ccCCcccceeEEeCHHHcccc
Confidence            432     234578899999999998764

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.69  E-value=9.9e-17  Score=135.40  Aligned_cols=111  Identities=21%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      .++++|++++.+  +|  +|||++|...  .++|.|+||||++|+|| ++.+||+||++||||+.+..+..++.+.....
T Consensus        23 ~~~~~~~~vi~~--~~--~vLL~~r~~~--~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~   95 (176)
T 3q93_A           23 ASRLYTLVLVLQ--PQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFV   95 (176)
T ss_dssp             CEEEEEEEEEEC--SS--EEEEEEECSS--TTTTSEECEEEECCTTS-CHHHHHHHHHHHHHSCEESCCEEEEEEEEEET
T ss_pred             CCcEEEEEEEEe--CC--EEEEEEEcCC--CCCCeEECceecCCCCC-CHHHHHHHHHHHHHCCcceeeEEEEEEEEEcC
Confidence            345555554433  45  8999999653  47999999999999999 99999999999999999998999988876554


Q ss_pred             CCce--EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          161 KHLL--RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 ~~~~--~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ....  .++.|++.....     .+.+.|..++.|++++++.+..
T Consensus        96 ~~~~~~~~~~f~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  135 (176)
T 3q93_A           96 GEPELMDVHVFCTDSIQG-----TPVESDEMRPCWFQLDQIPFKD  135 (176)
T ss_dssp             TCSCEEEEEEEEESCEES-----CCCCCSSEEEEEEETTCCCGGG
T ss_pred             CCCcEEEEEEEEEECCCC-----CcCCCcceeeEEeeHHHccccc
Confidence            4333  344455433221     2234567788999999988643

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.69  E-value=8.3e-17  Score=130.01  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-ccCC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF-LSKH  162 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~-~~~~  162 (275)
                      .+|.++++++++|  +|||++|.      +|.|+||||++|+|| ++.+||+||++||||+.......++.+..+ ....
T Consensus        19 ~~~~~vi~~~~~~--~vLl~~r~------~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   89 (148)
T 2azw_A           19 YAAYIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   89 (148)
T ss_dssp             CEEEEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             eEEEEEEECCCCC--eEEEEEcC------CCCEeCCCcccCCCC-CHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence            3444445553345  89999984      388999999999999 999999999999999998888888776422 1111


Q ss_pred             -----ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          163 -----LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       163 -----~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                           ...++.|.+......    ..+.+|+.++.|++++++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  130 (148)
T 2azw_A           90 RQTAYYNPGYFYVANTWRQL----SEPLERTNTLHWVAPEEAVRL  130 (148)
T ss_dssp             TTEEEEEEEEEEEEEEEEEC----SSCC-CCSEEEEECHHHHHHH
T ss_pred             CCcceEEEEEEEEEEcCcCC----cCCCCceeeEEEeeHHHHHhh
Confidence                 123455555544321    123478889999999999764

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.69  E-value=1.5e-16  Score=128.28  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEecc----
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEP----  157 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~----  157 (275)
                      .+|.+++++.++|  +|||++|+..    +|.|+||||++|+|| ++.+||+||++||||+....  +.+++....    
T Consensus        10 ~~v~~~i~~~~~~--~vLl~~r~~~----~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   82 (150)
T 2o1c_A           10 VSILVVIYAQDTK--RVLMLQRRDD----PDFWQSVTGSVEEGE-TAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFE   82 (150)
T ss_dssp             EEEEEEEEETTTC--EEEEEECSSS----TTCEESEEEECCTTC-CHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEE
T ss_pred             eEEEEEEEeCCCC--EEEEEEecCC----CCceECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeEEeeeceeeee
Confidence            4555556663335  8999999763    789999999999999 99999999999999998765  234443211    


Q ss_pred             -------ccc--CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          158 -------FLS--KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       158 -------~~~--~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                             .+.  .....++.|.+.+....    ..+.+|+.++.|++++++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~E~~~~~W~~~~el~~~~  133 (150)
T 2o1c_A           83 IFSHLRHRYAPGVTRNTESWFCLALPHER----QIVFTEHLAYKWLDAPAAAALT  133 (150)
T ss_dssp             CCGGGGGGBCTTCCEEEEEEEEEEESSCC----CCCCSSSSCEEEEEHHHHHHHC
T ss_pred             eecccccccCCCCcceEEEEEEEEcCCCC----CcChhHhhccEeecHHHHHhhh
Confidence                   111  12345666777765422    1234899999999999997643

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.69  E-value=8.9e-17  Score=139.72  Aligned_cols=117  Identities=20%  Similarity=0.133  Sum_probs=81.4

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCC----CCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMS----THSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~----~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      ..||.|++++.+++  +|||+++.....    ..++.|+||||++|+|| ++.+||+||++||||+.+..+..++.+...
T Consensus        57 ~~av~vl~~~~~~~--~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE-~~~~aA~REl~EEtGl~~~~~~~l~~~~~~  133 (209)
T 1g0s_A           57 GHAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLAS  133 (209)
T ss_dssp             CCEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEESC
T ss_pred             CCEEEEEEEECCCC--EEEEEEeecccCCCCCCCCeEEEeCcccCCCCc-CHHHHHHHHHHHHcCcccCcEEEeEEEecC
Confidence            34566656653345  888876532211    12578999999999999 999999999999999999999998887544


Q ss_pred             ccCCceEEEEEEEEEcCCC--CCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKK--AFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~--~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .......++.|++......  ......+++|+.++.|+|++++.+.
T Consensus       134 ~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~  179 (209)
T 1g0s_A          134 PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             TTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             CCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            4444456788888763211  1112357788999999999999764

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.68  E-value=4.5e-17  Score=141.03  Aligned_cols=115  Identities=18%  Similarity=0.132  Sum_probs=78.2

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCC-CCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAE-EGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE-~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      .+|.+++++ .+|  +|||++|.... .++|.|+||||++| +|| ++.+||+||++||||+....+..++.+.......
T Consensus        44 ~av~v~i~~-~~~--~vLLvrr~r~~-~~~~~w~lPgG~ve~~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  118 (207)
T 1mk1_A           44 GAVAIVAMD-DNG--NIPMVYQYRHT-YGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPGFS  118 (207)
T ss_dssp             CEEEEEECC-TTS--EEEEEEEEETT-TTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTB
T ss_pred             CEEEEEEEc-CCC--EEEEEEeecCC-CCCcEEEeCCccccCCCC-CHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcc
Confidence            466666665 355  89999887543 56889999999999 999 9999999999999999998888888763333333


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ...++.|++............+++|+.++.|++++++.+.-
T Consensus       119 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~  159 (207)
T 1mk1_A          119 DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRV  159 (207)
T ss_dssp             CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHH
T ss_pred             ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHH
Confidence            33566677664332111112567899999999999997653

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.68  E-value=2.8e-16  Score=138.42  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      ...+|.++++...+++.+|||++|...  .++|.|+||||++|+|| |+.+||+||++||||+....++.++.+......
T Consensus        12 p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gE-s~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~   88 (226)
T 2fb1_A           12 FYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRD   88 (226)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSS
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCC-CHHHHHHHHHHHHHCCCCCceEEEEEeCCCCcC
Confidence            345555555532234569999999863  56899999999999999 999999999999999999988888887643321


Q ss_pred             --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                        .......|++.+... .  ...+.+|+.++.|+|++++.+.
T Consensus        89 ~~~~~v~~~y~a~~~~~-~--~~~~~~e~~~~~W~~~~el~~l  128 (226)
T 2fb1_A           89 PGERVVSIAYYALININ-E--YDRELVQKHNAYWVNINELPAL  128 (226)
T ss_dssp             SSSCEEEEEEEEECCTT-S--SCHHHHHHTTEEEEETTSCCCB
T ss_pred             CCceEEEEEEEEEecCc-c--cccCCccccceEEEEHHHhhhc
Confidence              222333566766532 1  1235689999999999998754

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.68  E-value=1.7e-16  Score=145.92  Aligned_cols=122  Identities=18%  Similarity=0.219  Sum_probs=94.7

Q ss_pred             cCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcE-EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc---eEEEE
Q 023911           78 RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATREAKEEIGLDPLL---VEVVT  153 (275)
Q Consensus        78 ~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~w-sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~---~~~lg  153 (275)
                      ..+..+.+|.|.++..++++++++++||+.++..|||.| .++||++++|| ++.+||+||++||+||+.+.   +..++
T Consensus       113 ~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GE-s~~eaA~REl~EElGI~~~~~~~l~~~g  191 (300)
T 3dup_A          113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADL-SLRQNLIKECAEEADLPEALARQAIPVG  191 (300)
T ss_dssp             GGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTS-CHHHHHHHHHHHHHCCCHHHHTTCEEEE
T ss_pred             ccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCC-CHHHHHHHHHHHHhCCChhhhhhccccc
Confidence            346788999998888655567999999999999999999 58999999999 99999999999999998653   34555


Q ss_pred             Eecccc-cCCce---EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          154 VLEPFL-SKHLL---RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       154 ~l~~~~-~~~~~---~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+.... ...++   .++.|.+.+..  .+.+.++++||+++.|+|++++.+.
T Consensus       192 ~i~y~~~~~~G~~~E~~~vy~~~l~~--~~~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          192 AITYCMESPAGIKPDTLFLYDLALPE--DFRPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCT--TCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             eEEEEEecCCCeEEEEEEEEEEEecC--CCcCCCCchHhheEEEECHHHHHHH
Confidence            554332 12222   23445555543  4456789999999999999999864

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.68  E-value=5.3e-16  Score=124.69  Aligned_cols=91  Identities=26%  Similarity=0.322  Sum_probs=71.5

Q ss_pred             EEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--CceEEEEEEEEEcCCC
Q 023911          100 VILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--HLLRVVPVIGILSNKK  177 (275)
Q Consensus       100 VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--~~~~V~p~v~~l~~~~  177 (275)
                      |||++|+..    ++.|+||||++|+|| |+.+||+||++||||+......+++.+......  ....+..|++....  
T Consensus        27 vLl~~r~~~----~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--   99 (139)
T 2yyh_A           27 IVLIERKYP----PVGLALPGGFVEVGE-RVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQG--   99 (139)
T ss_dssp             EEEEEECSS----SCSEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEEES--
T ss_pred             EEEEEecCC----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCCcccceEEEEECCCCcCCCceEEEEEEEEecCC--
Confidence            999999753    455999999999999 999999999999999999888888877653322  23445667776632  


Q ss_pred             CCCCCCChhhhhcceecChhhhh
Q 023911          178 AFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       178 ~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                        .+. +++|+.++.|++++++.
T Consensus       100 --~~~-~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A          100 --EPK-AGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             --CCC-CCTTEEEEEEECTTSCC
T ss_pred             --ccC-CCCCcceEEEEEHHHCC
Confidence              122 45799999999999987

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.67  E-value=2.9e-16  Score=128.87  Aligned_cols=112  Identities=20%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEE--eccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTV--LEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~--l~~~~~  160 (275)
                      +.+|.+++++ .+|  +|||++|+.    ++|.|+||||++|+|| |+.+||+||++|||||....+.....  ..+.+.
T Consensus        14 ~~~v~~~i~~-~~~--~vLl~~r~~----~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T 1f3y_A           14 RRNVGICLMN-NDK--KIFAASRLD----IPDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             CCEEEEEEEC-TTS--CEEEEEETT----EEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCC
T ss_pred             eeeEEEEEEC-CCC--cEEEEecCC----CCCcEECCeeccCCCC-CHHHHHHHHHHHhhCCChhhhhcccccceeeecC
Confidence            3344445555 345  799999973    4699999999999999 99999999999999998754322211  111111


Q ss_pred             C--------------CceEEEEEEEEEcCCCCCCCCC-----ChhhhhcceecChhhhhccC
Q 023911          161 K--------------HLLRVVPVIGILSNKKAFTPTP-----NPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       161 ~--------------~~~~V~p~v~~l~~~~~~~~~~-----~~~EV~~v~wvpl~ell~~~  203 (275)
                      .              .+..++.|++.+.... ..+.+     +++|+.++.|++++++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  146 (165)
T 1f3y_A           86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQD-QEINLLGDGSEKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             HHHHHHHGGGSCSSCCSCBEEEEEEEECSCG-GGCCCCCCSSSCCSEEEEEEECHHHHHHHB
T ss_pred             ccccccccccccccccCceEEEEEEEecCCc-ccccccCCCCCCChhheeEEecHHHHHHHh
Confidence            0              1124566777765421 12223     36799999999999998743

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.67  E-value=9.2e-17  Score=141.27  Aligned_cols=89  Identities=19%  Similarity=0.065  Sum_probs=66.3

Q ss_pred             CCcEEcCCccCCC-CCCCHHHHHHHHHHHHhCCCC--cceEEEEEecccccCCceEEEEEEEEEcCCC---CCCCCCChh
Q 023911          113 SGEISLPGGKAEE-GDRDDGDTATREAKEEIGLDP--LLVEVVTVLEPFLSKHLLRVVPVIGILSNKK---AFTPTPNPA  186 (275)
Q Consensus       113 ~G~wsfPGG~vE~-gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~---~~~~~~~~~  186 (275)
                      ++.|+||||++|+ || |+.+||+||++||||+..  ..+..++.+.......+..++.|++.+....   .....++++
T Consensus        94 ~~~welPgG~ve~~gE-s~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~  172 (218)
T 3q91_A           94 GVTVELCAGLVDQPGL-SLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEG  172 (218)
T ss_dssp             CEEEECEEEECCSSSC-CHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------
T ss_pred             CeEEECCcceeCCCCC-CHHHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCC
Confidence            6799999999999 99 999999999999999998  7888888865544455667888888875321   112356788


Q ss_pred             hhhcceecChhhhhcc
Q 023911          187 EVEEVFDAPLEMFIKD  202 (275)
Q Consensus       187 EV~~v~wvpl~ell~~  202 (275)
                      |+.++.|+|++++.+.
T Consensus       173 E~~ev~wv~l~el~~~  188 (218)
T 3q91_A          173 ELIEVVHLPLEGAQAF  188 (218)
T ss_dssp             CCEEEEEEEGGGHHHH
T ss_pred             cEEEEEEEEHHHHHHH
Confidence            9999999999999764

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.66  E-value=4.8e-16  Score=138.07  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=87.0

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCC------CCC---HHHHHHHHHHHHhCCCCc--
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEG------DRD---DGDTATREAKEEIGLDPL--  147 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~g------E~s---~~eaAlRE~~EEtGL~~~--  147 (275)
                      ...+.||.|++++ .+|  +|||++|+..+..+||.|++| ||++++|      | +   +.+||+||++|||||+..  
T Consensus        56 g~~h~av~v~v~~-~~g--~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E-~~~~~~~Aa~REl~EElGi~~~~v  131 (235)
T 2dho_A           56 GLLHRAFSVFLFN-TEN--KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEES-DALGVRRAAQRRLKAELGIPLEEV  131 (235)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCGGGS
T ss_pred             CceEEEEEEEEEc-CCC--EEEEEEecCcCCCCCCcEEeccCceecCCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            4467788887776 456  899999999888899999999 5999999      6 7   499999999999999865  


Q ss_pred             ---ceEEEEEeccccc-CCc----eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          148 ---LVEVVTVLEPFLS-KHL----LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       148 ---~~~~lg~l~~~~~-~~~----~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         .+..++.+.+... ..+    ..++.|++....    .+.++++||.++.|++++++.+.
T Consensus       132 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~----~~~~~~~Ev~~~~wv~~~el~~~  190 (235)
T 2dho_A          132 PPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNV----TLNPDPNEIKSYCYVSKEELKEL  190 (235)
T ss_dssp             CGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECCC----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ChhhcEEEEEEEEeccCCCccceeEEEEEEEEEECC----CCcCChHHEEEEEEEcHHHHHHH
Confidence               3577777653332 111    134555555432    34678899999999999999764

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.66  E-value=2.4e-16  Score=140.19  Aligned_cols=113  Identities=23%  Similarity=0.237  Sum_probs=83.7

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCC--CCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEE--GDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~--gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      ..+|.++++.-.+++++|||++|+.  ..++|.|+||||++|+  || |+.+||+||++|||||+...++.++.+.....
T Consensus        22 ~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lPGG~ve~~~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r   98 (240)
T 3gz5_A           22 LLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLPGGFIDETCDE-SLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSR   98 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECSEEECCTTTCS-BHHHHHHHHHHHHHSSCCSEEEEEEEEEESSS
T ss_pred             ccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECCccccCCCCCc-CHHHHHHHHHHHHHCCCCCceeeEEEeCCCcc
Confidence            3455444443234567999999985  3578999999999999  99 99999999999999999998998888765432


Q ss_pred             --CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          161 --KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       161 --~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                        ........|++.+....   ...+.+|+.++.|+|++++.+
T Consensus        99 ~~~~~~~~~~y~a~~~~~~---~~~~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A           99 DARGWSVTVCYTALMSYQA---CQIQIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             STTSCEEEEEEEEECCHHH---HHHHHTTCTTEEEEEHHHHTT
T ss_pred             CCCceEEEEEEEEEecccc---cCCCCCcccceEEecHHHccc
Confidence              22334455666654321   122467899999999999964

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.65  E-value=7.7e-16  Score=137.69  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCC-ccCCCC------CCCH---HHHHHHHHHHHhCCCCc--
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPG-GKAEEG------DRDD---GDTATREAKEEIGLDPL--  147 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPG-G~vE~g------E~s~---~eaAlRE~~EEtGL~~~--  147 (275)
                      ...+.||.|++++ .+|  +|||++|+..+..+||.|++|+ |++++|      | ++   .+||+||++|||||+..  
T Consensus        67 g~~h~av~v~v~~-~~g--~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~E-t~~~~~eAA~REl~EElGi~~~~v  142 (246)
T 2pny_A           67 GLLHRAFSVVLFN-TKN--RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEK-DAIGVRRAAQRRLQAELGIPGEQI  142 (246)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCTTTC
T ss_pred             CcEEEEEEEEEEe-CCC--EEEEEEecCCCCCCCCceEeccCceeccCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            4466778777776 456  7999999998889999999995 999999      7 76   89999999999999865  


Q ss_pred             ---ceEEEEEeccccc-CCc----eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          148 ---LVEVVTVLEPFLS-KHL----LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       148 ---~~~~lg~l~~~~~-~~~----~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                         .+..++.+.+... ..+    ..++.|++....    .+.++++||.++.|++++++.+.
T Consensus       143 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~----~~~~~~~Ev~~~~wv~~eel~~~  201 (246)
T 2pny_A          143 SPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNV----TLNPDPSETKSILYLSQEELWEL  201 (246)
T ss_dssp             CGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCC----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred             CccccEEEEEEEEEecCCCceeeeEEEEEEEEEECC----CCCCChHHeeEEEEEeHHHHHHH
Confidence               3567777653321 111    133455555432    34678899999999999999763

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.64  E-value=5.6e-16  Score=126.67  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .+|.+++++  +|  +|||++|       +|.|+||||++|+|| ++.+||+||++||||+.....++++.........+
T Consensus        20 ~~~~~ii~~--~~--~vLl~~r-------~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   87 (154)
T 2pqv_A           20 VRATALIVQ--NH--KLLVTKD-------KGKYYTIGGAIQVNE-STEDAVVREVKEELGVKAQAGQLAFVVENRFEVDG   87 (154)
T ss_dssp             EEEEECCEE--TT--EEEEEEE-------TTEEECEEEECBTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEE--CC--EEEEEec-------CCeEECcccCcCCCC-CHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCC
Confidence            344444444  45  8999999       588999999999999 99999999999999999888888777654433222


Q ss_pred             e----EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          164 L----RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       164 ~----~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .    .++.|.+.+...... ...+++|+.++.|++++++.+..
T Consensus        88 ~~~~~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~  130 (154)
T 2pqv_A           88 VSYHNIEFHYLVDLLEDAPL-TMQEDEKRQPCEWIDLDKLQNIQ  130 (154)
T ss_dssp             EEEEEEEEEEEEEESSCCCS-EEEETTEEEEEEEEEGGGGGGSC
T ss_pred             CcceEEEEEEEEEecCCCCc-ccCCCCceeeEEEeEHHHHhhcC
Confidence            2    233555655432111 01235678999999999998743

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.64  E-value=6.2e-16  Score=137.35  Aligned_cols=122  Identities=23%  Similarity=0.315  Sum_probs=87.5

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCC-------------------HHHHHHHHHHH
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRD-------------------DGDTATREAKE  140 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s-------------------~~eaAlRE~~E  140 (275)
                      ..|.||++|++.++.+|+++|||++|+.+...++|.|.||||++|++|.+                   +..||+||++|
T Consensus         6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E   85 (232)
T 3qsj_A            6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE   85 (232)
T ss_dssp             CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence            45889999988775433389999999998888899999999999999933                   58999999999


Q ss_pred             HhCCCCcceEE---------------------------------------EEEecccc----cCCceEEEEEEEEEcCCC
Q 023911          141 EIGLDPLLVEV---------------------------------------VTVLEPFL----SKHLLRVVPVIGILSNKK  177 (275)
Q Consensus       141 EtGL~~~~~~~---------------------------------------lg~l~~~~----~~~~~~V~p~v~~l~~~~  177 (275)
                      ||||....-.-                                       |..+....    ...++..+.|++.+... 
T Consensus        86 E~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~-  164 (232)
T 3qsj_A           86 EIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHL-  164 (232)
T ss_dssp             HHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSC-
T ss_pred             HhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCC-
Confidence            99996432110                                       01111111    12345566677776631 


Q ss_pred             CCCCCCChhhhhcceecChhhhhccC
Q 023911          178 AFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       178 ~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                       .....+.+|+.++.|++++++++.-
T Consensus       165 -~~v~~d~~E~~~~~W~~p~eal~~~  189 (232)
T 3qsj_A          165 -GEPRLHGAELDAALWTPARDMLTRI  189 (232)
T ss_dssp             -CCCCCCSSSEEEEEEEEHHHHHHHH
T ss_pred             -CCCCCCCCceEEEEEEcHHHHHHHH
Confidence             1125688999999999999998653

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.64  E-value=2.5e-15  Score=128.07  Aligned_cols=106  Identities=21%  Similarity=0.046  Sum_probs=79.4

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK  161 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~  161 (275)
                      ...+|.+++++  +|  +|||++|....  ++|.|+||||++|+|| |+.+||+||++||||+......+++....  ..
T Consensus        39 ~~~~v~~ii~~--~~--~vLL~~r~~~~--~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~  109 (189)
T 3cng_A           39 PKVIVGCIPEW--EN--KVLLCKRAIAP--YRGKWTLPAGFMENNE-TLVQGAARETLEEANARVEIRELYAVYSL--PH  109 (189)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEEESSSS--STTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEE--GG
T ss_pred             CceEEEEEEEe--CC--EEEEEEccCCC--CCCeEECceeeccCCC-CHHHHHHHHHHHHHCCccccceeEEEEec--CC
Confidence            34455555555  45  89999998743  4889999999999999 99999999999999999877776665432  22


Q ss_pred             CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911          162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI  200 (275)
Q Consensus       162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell  200 (275)
                      ....++.|++.....   .+. ..+|+.++.|++++++.
T Consensus       110 ~~~~~~~f~~~~~~~---~~~-~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          110 ISQVYMLFRAKLLDL---DFF-PGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             GTEEEEEEEEEECCS---CCC-CCTTEEEEEEECTTTCC
T ss_pred             CcEEEEEEEEEeCCC---ccC-CCccceeEEEECHHHcC
Confidence            344566677776542   122 35789999999999986

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.63  E-value=1.4e-16  Score=138.92  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=88.3

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceE-----EEEEecccccCCceEEEEEEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVE-----VVTVLEPFLSKHLLRVVPVIGIL  173 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~-----~lg~l~~~~~~~~~~V~p~v~~l  173 (275)
                      +|||++|      ++|.|+||||++|+||.|+.+||+||++||||+.....+     .++.+...+. ....++.|++.+
T Consensus        57 ~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~f~~~~  129 (212)
T 1u20_A           57 VLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHFYIKEL  129 (212)
T ss_dssp             EEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEEEEEEC
T ss_pred             EEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEEEEEEe
Confidence            8999998      379999999999999878999999999999999887553     4555544444 456677888776


Q ss_pred             cCCC-------CCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHHHHHHHHH
Q 023911          174 SNKK-------AFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAAS  246 (275)
Q Consensus       174 ~~~~-------~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~iL~~~~~  246 (275)
                      ....       ......+++|+.+++|+|++++.+....             .+.| +    ....||+++++|+..+..
T Consensus       130 ~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~~-------------~p~f-~----~~~~i~~a~~~l~~~l~~  191 (212)
T 1u20_A          130 KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGG-------------LPAF-L----CNNFIGNSKSQLLYALRS  191 (212)
T ss_dssp             CHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTB-------------HHHH-T----TSCBCTTHHHHHHHHHHH
T ss_pred             cCCCcccccccccccccCCcceEEEEEEEHHHhhhhhcC-------------Cchh-h----hhhhhHHHHHHHHHHHHh
Confidence            4210       0111235678999999999998654110             0111 1    245799999999877755

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.63  E-value=4.7e-16  Score=133.88  Aligned_cols=96  Identities=23%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|..    ++|.|+||||++|+|| ++.+||+||++|||||.....++++.+....  ....++.|++.+.....
T Consensus        55 ~vLLv~r~~----~~g~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~f~~~~~~~~~  127 (194)
T 2fvv_A           55 EVLLVSSSR----HPDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLE  127 (194)
T ss_dssp             EEEEEECSS----CTTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTEEEEEEEEEEEEECS
T ss_pred             EEEEEEEeC----CCCcEECCCCcCCCCc-CHHHHHHHHHHHHhCCccccceEEEEEEcCC--CceEEEEEEEEEccccC
Confidence            899999874    3689999999999999 9999999999999999988888888876432  22345566665542111


Q ss_pred             CCCCCChhhhhcceecChhhhhcc
Q 023911          179 FTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       ....+.++..++.|++++++.+.
T Consensus       128 -~~~~~~e~~~~~~W~~~~el~~~  150 (194)
T 2fvv_A          128 -DWEDSVNIGRKREWFKIEDAIKV  150 (194)
T ss_dssp             -SCHHHHHHCCCEEEEEHHHHHHH
T ss_pred             -CCCCcccccceEEEEEHHHHHHH
Confidence             11111224468999999998753

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.6e-16  Score=127.35  Aligned_cols=97  Identities=22%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEE-cCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGIL-SNKK  177 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l-~~~~  177 (275)
                      +|||++|..     +|.|+||||++|+|| |+.+||+||++||||+....+..+..+... ...+...+.|++.. ....
T Consensus        18 ~vLl~~r~~-----~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   90 (146)
T 2jvb_A           18 KILLVQGTE-----SDSWSFPRGKISKDE-NDIDCCIREVKEEIGFDLTDYIDDNQFIER-NIQGKNYKIFLISGVSEVF   90 (146)
T ss_dssp             EEEEECCSS-----SSCCBCCEECCCSSS-CHHHHHHHHHHHHTSCCCSSSSCSSCEEEE-EETTEEEEEEEECCCCSSS
T ss_pred             EEEEEEEcC-----CCcEECCcccCCCCC-CHHHHHHHHHHHHHCCCchHhccccccccc-ccCCceEEEEEEEeccccc
Confidence            899998764     689999999999999 999999999999999987653222211111 11122333443332 2111


Q ss_pred             CCCCCCChhhhhcceecChhhhhccC
Q 023911          178 AFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       178 ~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ...+ .+.+|+.++.|+|++++.+.-
T Consensus        91 ~~~~-~~~~E~~~~~W~~~~el~~~~  115 (146)
T 2jvb_A           91 NFKP-QVRNEIDKIEWFDFKKISKTM  115 (146)
T ss_dssp             CCCC-CCSSSCCCEEEEEHHHHHTGG
T ss_pred             cCCc-CCcchhheeEEeEHHHHHhhh
Confidence            1111 246899999999999998753

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.63  E-value=2.1e-15  Score=129.18  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCC-Ccce----EEEEEe
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD-PLLV----EVVTVL  155 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~-~~~~----~~lg~l  155 (275)
                      ..+.++.+++++.+++  +|||++|..     .|.|+||||++|+|| |+.+||+||++|||||. ...+    ..+...
T Consensus        43 ~~h~~~~~vv~~~~~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~  114 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERN--KFLMIHHNI-----YNSWAWTGGHSDNEK-DQLKVAIKELKEETGVKNPTPLLDKAFALDVL  114 (197)
T ss_dssp             SEEEEEEEEEECTTSC--EEEEEEETT-----TTEEECEEEECTTCC-BHHHHHHHHHHHHHCCSSCEESCSSCSEEEEE
T ss_pred             CccEEEEEEEEECCCC--EEEEEEecC-----CCCEECCccccCCCC-CHHHHHHHHHHHHHCCCcccccCCCceEEEEe
Confidence            3455565656664333  899999873     789999999999999 99999999999999998 3211    011111


Q ss_pred             cccc-c------CCceEE-EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          156 EPFL-S------KHLLRV-VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       156 ~~~~-~------~~~~~V-~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .... .      ....++ ..|++.....  ....++++|+.++.|+|++++.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~  168 (197)
T 3fcm_A          115 TVNGHIKRGKYVSSHLHLNLTYLIECSED--ETLMLKEDENSGVMWIPFNEISKYC  168 (197)
T ss_dssp             EECCEEETTEEECCEEEEEEEEEEECCTT--SCCCCCC----CEEEEEGGGHHHHC
T ss_pred             eecCccccCcccCCceeEEEEEEEEeCCC--cccCCCcccccceEEccHHHHHhhc
Confidence            1000 0      011111 3445554432  2335678999999999999998654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.63  E-value=2.1e-15  Score=126.23  Aligned_cols=83  Identities=25%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA  178 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~  178 (275)
                      +|||++|.      +|.|+||||++|+|| |+.+||+||++||||+.......++.+....    ...+.|++.+..   
T Consensus        28 ~vLL~~r~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~~f~~~~~~---   93 (163)
T 3f13_A           28 GVLVTASR------GGRYNLPGGKANRGE-LRSQALIREIREETGLRINSMLYLFDHITPF----NAHKVYLCIAQG---   93 (163)
T ss_dssp             EEEEEECC---------BBCSEEECCTTC-CHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEEEEEEEC-C---
T ss_pred             EEEEEEEC------CCeEECCceeCCCCC-CHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEEEEEEEECC---
Confidence            79999985      588999999999999 9999999999999999998888887654322    344556665432   


Q ss_pred             CCCCCChhhhhcceecChh
Q 023911          179 FTPTPNPAEVEEVFDAPLE  197 (275)
Q Consensus       179 ~~~~~~~~EV~~v~wvpl~  197 (275)
                       .+.++ +|+.++.|++.+
T Consensus        94 -~~~~~-~E~~~~~W~~~~  110 (163)
T 3f13_A           94 -QPKPQ-NEIERIALVSSP  110 (163)
T ss_dssp             -CCCCC-TTCCEEEEESST
T ss_pred             -cCccC-CCceEEEEECcc
Confidence             23445 499999999933

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.63  E-value=3.9e-15  Score=124.19  Aligned_cols=111  Identities=17%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc--
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL--  159 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~--  159 (275)
                      .+.+|.+++++ .+|  +|||++|..     +|.|+||||++|+|| |+.+||+||++||||+....+.+++.+....  
T Consensus         7 ~~~~v~~~i~~-~~~--~vLl~~r~~-----~~~w~~p~G~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~   77 (164)
T 2kdv_A            7 YRPNVGIVICN-RQG--QVMWARRFG-----QHSWQFPQGGINPGE-SAEQAMYRELFEEVGLSRKDVRILASTRNWLRY   77 (164)
T ss_dssp             EEEEEEEEEEC-TTS--EEEEEEETT-----CCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEE
T ss_pred             CCcEEEEEEEc-cCC--EEEEEEEcC-----CCeEECCeeecCCCC-CHHHHHHHHHHHHHCCCccceEEEEEecceeEE
Confidence            35566666666 345  899999974     689999999999999 9999999999999999999999988865321  


Q ss_pred             --cC-----------CceEEEEEEEEEcCCCCCCCCCC---hhhhhcceecChhhhhcc
Q 023911          160 --SK-----------HLLRVVPVIGILSNKKAFTPTPN---PAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 --~~-----------~~~~V~p~v~~l~~~~~~~~~~~---~~EV~~v~wvpl~ell~~  202 (275)
                        ..           .+..++.|++.+.... ....++   .+|+.++.|++++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           78 KLPKRLVRWDTKPVCIGQKQKWFLLQLVSGD-AEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             ECCTTTCCTTSSSCCCEEEEEEEEEEESSCG-GGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             ecCcceeeeccCcccccceeEEEEEEecCCc-cccccCCCCCchhceEEEecHHHhhhh
Confidence              10           1224566777665321 122333   359999999999987653

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.61  E-value=1.8e-15  Score=137.03  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      +.....+|++++.+  ++  +|||++|+...   +|.|+||||++|+|| |+++||+||++||||+.+..+++++..+..
T Consensus       136 yp~~~~~viv~v~~--~~--~vLL~rr~~~~---~g~w~lPgG~vE~GE-t~eeAa~REv~EEtGl~v~~~~~~~~~~~~  207 (269)
T 1vk6_A          136 YPQIAPCIIVAIRR--DD--SILLAQHTRHR---NGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVTSQPWP  207 (269)
T ss_dssp             CCCCEEEEEEEEEE--TT--EEEEEEETTTC---SSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred             cCCCCcEEEEEEEe--CC--EEEEEEecCCC---CCcEECCcCcCCCCC-CHHHHHHHHHHHHhCceeeeEEEEEEEecC
Confidence            33344555554443  35  89999998643   799999999999999 999999999999999999999998887643


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      ..  ...+..|++.+.+.   .+.++++|+.++.|++++++..
T Consensus       208 ~~--~~~~~~f~a~~~~~---~~~~~~~E~~~~~W~~~~el~~  245 (269)
T 1vk6_A          208 FP--QSLMTAFMAEYDSG---DIVIDPKELLEANWYRYDDLPL  245 (269)
T ss_dssp             TT--EEEEEEEEEEEEEC---CCCCCTTTEEEEEEEETTSCCS
T ss_pred             CC--CEEEEEEEEEECCC---CcCCCCcceEEEEEEEHHHhhh
Confidence            33  23456666665432   2356778999999999999864

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.60  E-value=9.7e-15  Score=132.07  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=79.8

Q ss_pred             eEEEEEEEEeecCC--ceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCC--CcceEEEEEeccc
Q 023911           83 KAAVLICLFEGDAG--DLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD--PLLVEVVTVLEPF  158 (275)
Q Consensus        83 ~aAVlv~L~~~~~g--~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~--~~~~~~lg~l~~~  158 (275)
                      ..+|.++++...++  +.+|||++|...  .++|.|+||||++|+|| ++.+||+||++||||+.  ...+..++.+...
T Consensus        39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~  115 (273)
T 2fml_A           39 SLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRP  115 (273)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCT
T ss_pred             ceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCc-CHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCC
Confidence            34444444432233  679999999864  46899999999999999 99999999999999965  4456667766433


Q ss_pred             ccC--CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSK--HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~--~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...  .....+.|++.+....    ....+|+.++.|++++++.+.
T Consensus       116 ~r~~~~~~~~~~y~a~~~~~~----~~~~~E~~~~~W~~~~e~~~~  157 (273)
T 2fml_A          116 DRDPRGWVVTVSYLAFIGEEP----LIAGDDAKEVHWFNLERHGQH  157 (273)
T ss_dssp             TSSTTSSEEEEEEEEECCCCC----CCCCTTEEEEEEEEEEEETTE
T ss_pred             CCCCCceEEEEEEEEEeCCCC----CCCCcceeeEEEEEhhHhhhh
Confidence            211  2234456677665421    235588999999999987653

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.59  E-value=6.8e-15  Score=125.59  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc-----eEEEEEEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL-----LRVVPVIGIL  173 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~-----~~V~p~v~~l  173 (275)
                      +|||++|..     +|.|+||||++|+|| ++.+||+||++|||||.....++++.+........     +.++.|.+..
T Consensus        16 ~vLL~~r~~-----~g~W~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~   89 (188)
T 3fk9_A           16 QVLLLQKPR-----RGWWVAPGGKMEAGE-SILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATE   89 (188)
T ss_dssp             EEEEEECTT-----TCCEECCEEECCTTC-CHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESC
T ss_pred             EEEEEEeCC-----CCeEECCeecccCCC-CHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEEC
Confidence            899999853     799999999999999 99999999999999999888888888766543322     1334444432


Q ss_pred             cCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          174 SNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...   .+.. ..|..++.|++++++.+.
T Consensus        90 ~~~---~~~~-~~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           90 HEG---EMLK-QSPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             EES---CCCS-EETTEEEEEEEGGGGGGS
T ss_pred             CCC---CCcC-CCCCEeEEEEEHHHhhhC
Confidence            221   1222 345578999999999764

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.58  E-value=7.1e-15  Score=137.56  Aligned_cols=103  Identities=18%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             CceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC-------------
Q 023911           96 GDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH-------------  162 (275)
Q Consensus        96 g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~-------------  162 (275)
                      ++.+|||++|..     .|.|+||||++|+|| ++.+||+||++|||||+.....+++.....+...             
T Consensus        36 ~~~~vLLv~r~~-----~g~W~lPgG~ve~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  109 (364)
T 3fjy_A           36 DSIEVCIVHRPK-----YDDWSWPKGKLEQNE-THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTAD  109 (364)
T ss_dssp             TTEEEEEEEETT-----TTEEECCEEECCTTC-CHHHHHHHHHHHHHSCCEEEEEEEEEEC-------------------
T ss_pred             CceEEEEEEcCC-----CCCEECCcCCCCCCC-CHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccC
Confidence            457999999954     489999999999999 9999999999999999998888888776554321             


Q ss_pred             ceEEEEEEEEEcCCC---------CCCCCCChhhhhcceecChhhhhccCC
Q 023911          163 LLRVVPVIGILSNKK---------AFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~---------~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      ...++.|++......         .....++++|+.++.|+|++++.+.-.
T Consensus       110 ~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  160 (364)
T 3fjy_A          110 TKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILS  160 (364)
T ss_dssp             --CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCS
T ss_pred             ceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhc
Confidence            245667777665421         011245778999999999999987543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.57  E-value=2.1e-15  Score=136.59  Aligned_cols=110  Identities=17%  Similarity=0.042  Sum_probs=70.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~  164 (275)
                      +|.+++++.++|  +|||++|..    ++|.|+||||++|+|| |+.+||+||++||||++...+..++.+.. ....+.
T Consensus       103 ~v~avv~~~~~~--~vLLv~r~~----~~g~W~lPgG~ve~gE-s~~eAA~REl~EEtGl~~~~l~~~~~~~~-~~~~~~  174 (271)
T 2a6t_A          103 VRGAIMLDMSMQ--QCVLVKGWK----ASSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFID-MTIRGQ  174 (271)
T ss_dssp             EEEEEEBCSSSS--EEEEEEESS----TTCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEE-EEETTE
T ss_pred             eEEEEEEECCCC--EEEEEEEeC----CCCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCceeeeeeeeecc-CCcCCc
Confidence            344445553335  899999965    3689999999999999 99999999999999998876432211110 011223


Q ss_pred             EEEEEEEEEcCCCCCCCC-CChhhhhcceecChhhhhccC
Q 023911          165 RVVPVIGILSNKKAFTPT-PNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~-~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .++.|++..... ..... .+.+|+.++.|++++++.+..
T Consensus       175 ~~~~f~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~  213 (271)
T 2a6t_A          175 NVRLYIIPGISL-DTRFESRTRKEISKIEWHNLMDLPTFK  213 (271)
T ss_dssp             EEEEEEECCCCT-TCCCC------EEEEEEEEGGGSTTCC
T ss_pred             eEEEEEEEEecC-cccCCCCCccceeEEEEEEHHHHHHHH
Confidence            455566554321 11112 256899999999999997654

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.55  E-value=1.4e-14  Score=136.38  Aligned_cols=100  Identities=22%  Similarity=0.262  Sum_probs=80.8

Q ss_pred             EEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEE
Q 023911           88 ICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVV  167 (275)
Q Consensus        88 v~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~  167 (275)
                      +++.+ .+|  +|||++|... +.++|.|+||||++|+|  ++.+|+.||++||+|+.+...+.++.+.+.+++..+.++
T Consensus       245 ~vi~~-~~g--~vLL~rR~~~-g~~~GlWefPGG~ve~g--t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~  318 (369)
T 3fsp_A          245 AVLAD-DEG--RVLIRKRDST-GLLANLWEFPSCETDGA--DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLT  318 (369)
T ss_dssp             EEEEC-SSS--EEEEEECCSS-STTTTCEECCEEECSSS--CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEE
T ss_pred             EEEEe-CCC--EEEEEECCCC-CCcCCcccCCCcccCCC--CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEE
Confidence            33443 356  8999999864 47899999999999998  789999999999999998877777777777777667777


Q ss_pred             EEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          168 PVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       168 p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      +|.+.+...        .+|..++.|++++++.+
T Consensus       319 ~~~~~~~~~--------~~e~~~~~Wv~~~el~~  344 (369)
T 3fsp_A          319 VFPGRLVHG--------GPVEEPYRLAPEDELKA  344 (369)
T ss_dssp             EEEEEECCS--------SCCCTTEEEEEGGGGGG
T ss_pred             EEEEEEcCC--------CCCccccEEeeHHHhhh
Confidence            887776531        35778999999999865

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.53  E-value=1.2e-14  Score=119.48  Aligned_cols=49  Identities=27%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT  153 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg  153 (275)
                      +|||++|..     +|.|+||||++|+|| |+.+||+||++||||+.......++
T Consensus        13 ~vLL~~r~~-----~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~   61 (156)
T 1k2e_A           13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTY   61 (156)
T ss_dssp             EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCC
T ss_pred             EEEEEEEcC-----CCcEECCeeecCCCC-CHHHHHHHHHHHHHCCcceecccee
Confidence            899999864     689999999999999 9999999999999999876555443

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.53  E-value=7.4e-14  Score=128.26  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE------Ee
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT------VL  155 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg------~l  155 (275)
                      .+.+|.++++.  +|  +|||++|...  ..+|.|+||||++|+|| |+.+||+||++||||+......+++      .+
T Consensus       202 ~~~~v~~vi~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  274 (341)
T 2qjo_A          202 TFITTDAVVVQ--AG--HVLMVRRQAK--PGLGLIALPGGFIKQNE-TLVEGMLRELKEETRLKVPLPVLRGSIVDSHVF  274 (341)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEECCSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEE
T ss_pred             CceEEEEEEEe--CC--EEEEEEecCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHhhhhCCccccccccccccceEEE
Confidence            34555555554  45  8999999763  35899999999999999 9999999999999999987544322      22


Q ss_pred             cccc-c-CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          156 EPFL-S-KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       156 ~~~~-~-~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .... . ......+.|++.+.... .....+++|+.++.|+|++++.+.
T Consensus       275 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          275 DAPGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             CCTTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHHT
T ss_pred             eCCCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhhh
Confidence            2111 1 11233566777664322 111246689999999999999864

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.51  E-value=1.7e-13  Score=126.62  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=77.8

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEE------EEE
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEV------VTV  154 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~------lg~  154 (275)
                      ....+|.++++.  +|  +|||++|...  ..+|.|+||||++|+|| |+.+||+||++||||+......+      ...
T Consensus       206 ~~~~~v~~vv~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~  278 (352)
T 2qjt_B          206 PNFVTVDALVIV--ND--HILMVQRKAH--PGKDLWALPGGFLECDE-TIAQAIIRELFEETNINLTHEQLAIAKRCEKV  278 (352)
T ss_dssp             CEEEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEE
T ss_pred             CCceEEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHHHhhCCCcccchhcceeeeeEE
Confidence            334555555554  45  8999999864  35799999999999999 99999999999999998774322      122


Q ss_pred             eccccc--CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecCh-hhhhcc
Q 023911          155 LEPFLS--KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPL-EMFIKD  202 (275)
Q Consensus       155 l~~~~~--~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl-~ell~~  202 (275)
                      +.....  ......+.|++.+..........+++|+.++.|+++ +++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          279 FDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             ECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             ecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh
Confidence            221111  112245566676654221111234689999999999 999764

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.50  E-value=7e-15  Score=128.81  Aligned_cols=110  Identities=21%  Similarity=0.191  Sum_probs=72.1

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCC--CCCCcEEc-CCccCCCCCCC------HHHHHHHHHHHHhCCCCcceEEEE
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMS--THSGEISL-PGGKAEEGDRD------DGDTATREAKEEIGLDPLLVEVVT  153 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~--~~~G~wsf-PGG~vE~gE~s------~~eaAlRE~~EEtGL~~~~~~~lg  153 (275)
                      +....+ ++.. +|  +||+++|.....  ...|.|+| ||||+|+|| +      +.+||+||++|||||++....+++
T Consensus        68 q~i~~~-II~~-~g--rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GE-s~~p~EtleeAa~REl~EEtGl~v~~~~~ig  142 (211)
T 3e57_A           68 QVIPYV-VIMD-GD--RVLITKRTTKQSEKRLHNLYSLGIGGHVREGD-GATPREAFLKGLEREVNEEVDVSLRELEFLG  142 (211)
T ss_dssp             EEEEEE-EEEE-TT--EEEEEEC------------CBSSEECCCBGGG-CSSHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEE-EEEE-CC--EEEEEEECCCCCcccccCCcccccceEEeCCC-CCCchhhHHHHHHHHHHHHhCCeeeccEEEE
Confidence            333333 4443 46  899999987542  35689999 999999999 7      499999999999999988888888


Q ss_pred             EecccccC-CceE-EEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          154 VLEPFLSK-HLLR-VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       154 ~l~~~~~~-~~~~-V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+...... .... ...|.+....     ..+...|+.++.|++++++.+.
T Consensus       143 ~~~~~~~~~~~~~l~~~f~~~~~~-----g~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          143 LINSSTTEVSRVHLGALFLGRGKF-----FSVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             EEECCSSHHHHTEEEEEEEEEEEE-----EEESCTTTCEEEEEEHHHHHHH
T ss_pred             EEeccCCCCCeEEEEEEEEEEeCC-----ceeCCCCeEEEEEEEHHHHHHh
Confidence            87642211 1112 2345555432     1235578889999999999875

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.48  E-value=1.8e-14  Score=126.41  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEecccccC-CceEEEEEEEEEcC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFLSK-HLLRVVPVIGILSN  175 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~~~-~~~~V~p~v~~l~~  175 (275)
                      .+||++|.      +|.|+||||++|+||.++.+||+||++||||+....  +..+..+...... .....+.|++.+..
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~  139 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL  139 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence            46777764      688999999999998789999999999999998763  2211111111111 23344556666543


Q ss_pred             CCC-------CCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHHHHHHHHHHH
Q 023911          176 KKA-------FTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVV  248 (275)
Q Consensus       176 ~~~-------~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~iL~~~~~~~  248 (275)
                      ...       .....+.+|+.+++|+|++++.+..+..             |.|     -....|||.+++|+..+.+.-
T Consensus       140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d~~~~~-------------P~~-----L~~~~l~~~~~~i~~~l~~~~  201 (217)
T 2xsq_A          140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGL-------------PTF-----LENSFIGSAREQLLEALQDLG  201 (217)
T ss_dssp             HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSSTBH-------------HHH-----TTSCBCTTHHHHHHHHHHHTT
T ss_pred             ccceecccccccccccCCceeeEEEEEHHHhhhccccC-------------cHH-----HHHHHHHHHHHHHHHHHHhcC
Confidence            110       0012346799999999999986543211             111     124578999999999887644


Q ss_pred             hCCCC
Q 023911          249 YQKPP  253 (275)
Q Consensus       249 ~~~~p  253 (275)
                      .-...
T Consensus       202 ~~~~~  206 (217)
T 2xsq_A          202 LLQSG  206 (217)
T ss_dssp             TTC--
T ss_pred             CCCHH
Confidence            33333

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.33  E-value=2e-12  Score=118.10  Aligned_cols=44  Identities=32%  Similarity=0.427  Sum_probs=40.4

Q ss_pred             CceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCC
Q 023911           96 GDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD  145 (275)
Q Consensus        96 g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~  145 (275)
                      +.++|||++|..     .|.|+||||++|+|| ++.+||+||++||||+.
T Consensus       137 ~~l~vLl~~r~~-----~g~W~lPGG~Ve~GE-s~~eAA~REl~EETGl~  180 (292)
T 1q33_A          137 HILQFVAIKRKD-----CGEWAIPGGMVDPGE-KISATLKREFGEEALNS  180 (292)
T ss_dssp             BCEEEEEEECTT-----TCSEECCCEECCTTC-CHHHHHHHHHHHHHSCG
T ss_pred             CceEEEEEEecC-----CCcEeCCCcccCCCC-CHHHHHHHHHHHHhCCc
Confidence            357899999975     489999999999999 99999999999999997

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.92  E-value=7.3e-09  Score=89.79  Aligned_cols=57  Identities=19%  Similarity=0.301  Sum_probs=47.3

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCC
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL  144 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL  144 (275)
                      ..|+.++.|++++ +.+.++|||.++..      +.|.||||++|+|| ++++|..||+.||+|+
T Consensus        56 g~R~sV~avil~~-~~~~phVLLlq~~~------~~f~LPGGkle~gE-~~~eaL~REL~EELg~  112 (208)
T 3bho_A           56 GMRRTVEGVLIVH-EHRLPHVLLLQLGT------TFFKLPGGELNPGE-DEVEGLKRLMTEILGR  112 (208)
T ss_dssp             CSEEEEEEEEEEE-ETTEEEEEEEEEET------TEEECSEEECCTTC-CHHHHHHHHHHHHHCC
T ss_pred             CCceEEEEEEEEc-CCCCcEEEEEEcCC------CcEECCCcccCCCC-CHHHHHHHHHHHHhCC
Confidence            4566666666666 35667899999853      47999999999999 9999999999999995

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=92.64  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCC-CCcceEEEEEecccccCCceEEEEEEEEEc
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL-DPLLVEVVTVLEPFLSKHLLRVVPVIGILS  174 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL-~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~  174 (275)
                      .||++.|-      .|.|+||||++|+||.|++++..||+.||+|+ .+...+.+......+. ..+..+.|.+.+.
T Consensus        45 ~iLmQ~R~------~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~  114 (214)
T 3kvh_A           45 SVLMQMRF------DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLT  114 (214)
T ss_dssp             EEEEEEET------TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECC
T ss_pred             eEEEeeee------CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEee
Confidence            47888875      48899999999999999999999999999997 5665556655543333 3455666666654

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.62  E-value=1.3e-07  Score=87.36  Aligned_cols=93  Identities=17%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHh-CCCCcceEEEEEecccccCC
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEI-GLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEt-GL~~~~~~~lg~l~~~~~~~  162 (275)
                      ..|-+++..  +|  +|||+  .     ..| |++|||.++.++   .++|+||++||+ |+.+....+++.++...  .
T Consensus       184 ~~vgaii~~--~g--~vLL~--~-----~~G-W~LPG~~~~~~~---~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~  246 (321)
T 3rh7_A          184 IRLGAVLEQ--QG--AVFLA--G-----NET-LSLPNCTVEGGD---PARTLAAYLEQLTGLNVTIGFLYSVYEDKS--D  246 (321)
T ss_dssp             EEEEEEEES--SS--CEEEB--C-----SSE-EBCCEEEESSSC---HHHHHHHHHHHHHSSCEEEEEEEEEEECTT--T
T ss_pred             ceEEEEEEE--CC--EEEEe--e-----CCC-ccCCcccCCCCh---hHHHHHHHHHHhcCCEEeeceEEEEEEcCC--C
Confidence            445454443  45  79998  2     258 999999776555   469999999997 99999888888876443  2


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ......|.|.+.+..          ..++.|++++++...+
T Consensus       247 ~~~~i~f~~~~~~g~----------~~e~~~f~~~elp~~~  277 (321)
T 3rh7_A          247 GRQNIVYHALASDGA----------PRQGRFLRPAELAAAK  277 (321)
T ss_dssp             CCEEEEEEEEECSSC----------CSSSEEECHHHHTTCE
T ss_pred             ceEEEEEEEEeCCCC----------eeeeEEECHHHCCCcc
Confidence            222335556654311          2778999999997663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	6e-34
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	9e-08
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-07
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	4e-06
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	6e-06
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	9e-06
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	5e-05
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	5e-05
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	8e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	1e-04
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-04
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	4e-04
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	5e-04
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	7e-04
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	0.002

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  119 bits (299), Expect = 6e-34
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 80  RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAK 139
             ++AAVL+ L      D RV+LT RSS + TH G+I+ PGG  + G+      A REA+
Sbjct: 29  HYRRAAVLVALT--READPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT-QAALREAQ 85

Query: 140 EEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMF 199
           EE+ LDP  V ++  L+   +     V PV+G +   +A        EV ++    L   
Sbjct: 86  EEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRI-APEALDTLRVTPEVAQIITPTLAEL 144

Query: 200 IKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
                 R+      G +  L+ + +        IWG+TA +L
Sbjct: 145 RAVPLVRERRTLPDGTEVPLYRYPWR----GLDIWGMTARVL 182

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
            +   L+ + +      RV+L  +       +G  +  GGK +EG+    D A RE +EE
Sbjct: 4   SRLYTLVLVLQPQ----RVLLGMKKRGF--GAGRWNGFGGKVQEGE-TIEDGARRELQEE 56

Query: 142 IGLDPLLVEVVTVLE-PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200
            GL    +  V  +   F+ +  L  V V        +   TP  ++        L+  I
Sbjct: 57  SGLTVDALHKVGQIVFEFVGEPELMDVHVFCT----DSIQGTPVESDEMRPCWFQLDQ-I 111

Query: 201 KDENRRDEEREW----MGEKFLLHFFDYEYENK 229
             ++   ++  W    + +K    +F ++ ++ 
Sbjct: 112 PFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDT 144

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 73  IKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGD 132
             D + ++ K+AA L    E +   L V         S H     +PGG  E  + +   
Sbjct: 4   TYDGDGYK-KRAACLCFRSESEEEVLLV-------SSSRHPDRWIVPGGGMEP-EEEPSV 54

Query: 133 TATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPV 169
            A RE  EE G+   L  +V + E    KH   V  +
Sbjct: 55  AAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVL 91

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 76  PERFRPKKAA-VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTA 134
           PE  +P     +++  +  +A  L+V+L +R           +LPGG     +  + D+ 
Sbjct: 31  PEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTE-DSV 87

Query: 135 TREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDA 194
            RE KEE G+      +  +          R   V           P     + +EV   
Sbjct: 88  LRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWF 147

Query: 195 PLEMFIKDENRRDEEREWMGEKFLLHFFDYE 225
            LE   +      E+ E   +         +
Sbjct: 148 NLERHGQHITLSHEDVEITLDLKTAASLGKD 178

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 14/78 (17%)

Query: 85  AVLICLFEGDAGDL--------RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATR 136
           A    L       L         +++  R        G +  PGG  +  D    +   R
Sbjct: 22  ACHALLHAPSQAKLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKR 75

Query: 137 EAKEEIGLDPLLVEVVTV 154
           E +EE+G     VEV   
Sbjct: 76  ELEEELGPALATVEVTED 93

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 42.5 bits (99), Expect = 9e-06
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 83  KAAVLICLFEGDAGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKE 140
           +AA ++ L E       ++L +          +G   +P G  E+G+ +  D A REA E
Sbjct: 13  RAAGVVLLNERG----DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACE 67

Query: 141 EIGLDPLLVEVVTVLE-PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLE 197
           E GL    V+ +      F    L+     +      +   P     E+ E      E
Sbjct: 68  ETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTD-EIAEASFVSRE 124

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 88  ICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL 147
           ICL E      RV++  R+   +  SG  + PGG   E D    ++  RE  EE GL   
Sbjct: 12  ICLIEDLETQ-RVVMQYRAPENNRWSG-YAFPGGHV-ENDEAFAESVIREIYEETGLTIQ 68

Query: 148 LVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEV 191
             ++V +    L      +V           F+ T   +E  EV
Sbjct: 69  NPQLVGIKNWPLDTGGRYIVICYKA----TEFSGTLQSSEEGEV 108

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 70  TPIIKDPE---RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEG 126
           TP     E    ++ + AA +I     +      ++  ++      +G   LPGG+ E  
Sbjct: 2   TPTFGKREETLTYQTRYAAYIIVSKPEN----NTMVLVQA-----PNGAYFLPGGEIEGT 52

Query: 127 DRDDGDTATREAKEEIGLDPLLVEVVTVLE-PFLSKHLLRVVPVIGILSNKKAFTPTPNP 185
           +  + +   RE  EE+G+   +   +   +  F S H        G       +     P
Sbjct: 53  ETKE-EAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEP 111

Query: 186 A-EVEEVFDAPLEMFIKDENRRDEEREWMGEKFL 218
                 +     E       +R   R W  EK+L
Sbjct: 112 LERTNTLHWVAPEE-AVRLLKRGSHR-WAVEKWL 143

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 8e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
           A  I + +G     ++++ +R+       G +    G   + D    ++A REA+EE+G+
Sbjct: 32  ATYIVVHDGMG---KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 88

Query: 145 DPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLE 197
             +                +       +              EV EV     E
Sbjct: 89  AGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP----FALQEDEVSEVCWLTPE 137

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 64  GFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKA 123
           G   +  PII    R++   +   I         L+ +  KR        GE ++PGG  
Sbjct: 108 GPNHAADPIIT---RWKRDSSGNKIMHPVSGKHILQFVAIKR-----KDCGEWAIPGGMV 159

Query: 124 EEGDRDDGDTATREAKEEIGLDPLLVEVVTV 154
           + G++    T  RE  EE             
Sbjct: 160 DPGEKIS-ATLKREFGEEALNSLQKTSAEKR 189

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP-LLVEVVTVLEP 157
           + +L K        S     P GK ++ +  D D A RE  EE G D    +     ++ 
Sbjct: 16  QCVLVKGWK----ASSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFIDM 70

Query: 158 FLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFD-APLEMFIKDENRRDEEREWMGEK 216
            +    +R+  + GI  + +  + T       E  +   L  F K++ +  + + +M   
Sbjct: 71  TIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIP 130

Query: 217 FLLHFFDY 224
           FL     +
Sbjct: 131 FLAPLKKW 138

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 5/127 (3%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
           A    LF       ++++T+R+       G  +       +    + D   R  + E+G+
Sbjct: 4   AFSSWLFNAKG---QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

Query: 145 DPLLVEVVTVLEPFL--SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202
           +    E +     +       +    V  + + +       N  EV +     L   +  
Sbjct: 61  EITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHG 120

Query: 203 ENRRDEE 209
            +     
Sbjct: 121 IDATPWA 127

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 99  RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158
           +V+L K         G    PGG  E  +    +   RE +EE G+    +     +   
Sbjct: 13  KVLLVKHK-----RLGVYIYPGGHVEHNETPI-EAVKREFEEETGIVVEPIGFTYGIIDE 66

Query: 159 LSKHLLRVVPVI 170
            +      + ++
Sbjct: 67  NAVERPMPLVIL 78

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
            V   L        ++ + +RS   S     + +  G A +      +   REA+EE+ +
Sbjct: 30  VVNAFLRNSQG---QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 86

Query: 145 DPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEV----FDAPLEMFI 200
           +   +    +      +  L     +  L  +   TP  NP ++        +  L    
Sbjct: 87  EIDALSWRPLASFSPFQTTLSSFMCVYEL--RSDATPIFNPNDISGGEWLTPEHLLARIA 144

Query: 201 KDENRRDEEREW 212
             E  + +  E 
Sbjct: 145 AGEAAKGDLAEL 156

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 85  AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGL 144
            +   +F  + G++ ++L KR+       GE SL GG  ++ D    D A R   E  GL
Sbjct: 12  GIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQK-DESVDDAAKRVLAELTGL 68

Query: 145 DPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLE 197
           + + +E V      + +     V  I   +            +    +   + 
Sbjct: 69  ENVYMEQVGAFG-AIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNIN 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	100.0
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.83
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.8
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.79
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.79
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.77
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.77
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.75
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.75
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.74
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.74
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.74
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.73
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.72
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.71
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.7
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.68
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.68
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.68
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.67
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.63
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.63
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.6
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.58
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.57
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.56
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.43
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.39
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.36
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.35

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=3.6e-39  Score=276.39  Aligned_cols=158  Identities=31%  Similarity=0.482  Sum_probs=132.5

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      ..|+|||+|++++  +++.+|||++|+.++++|+|+||||||++|.+| |+.+||+||++|||||+++.+++++.++...
T Consensus        29 ~~r~aaVlv~~~~--~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E-~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~  105 (187)
T d1nqza_          29 HYRRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF  105 (187)
T ss_dssp             -CEEEEEEEEEES--SSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred             CCCccEEEEEEEE--CCCCEEEEEEcCCCCCCCCCeEeCCccccccCC-chhHHHHHHHHHhhccccceeEEeeccccee
Confidence            5679999999986  356799999999999999999999999999999 9999999999999999999999999999888


Q ss_pred             cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHH
Q 023911          160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAG  239 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~  239 (275)
                      +.+++.|+||++.+... ......+++||++++|+|+++|.+.++++.....+.|..+.+++|.|    +++.|||+||+
T Consensus       106 ~~~~~~V~p~v~~l~~~-~~~~~~~~~EV~~v~~vpl~~L~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~IWG~TA~  180 (187)
T d1nqza_         106 TPVGFHVTPVLGRIAPE-ALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLPDGTEVPLYRYPW----RGLDIWGMTAR  180 (187)
T ss_dssp             ETTTEEEEEEEEEECGG-GGGGCCCCTTEEEEECCBHHHHHHSCCEEEEEECTTSCEEEEEEEEE----TTEEEEHHHHH
T ss_pred             eccccEEEEEEEEECCc-cccccccCCcceEEEeccHHHHhcCcccceEEEccCCcEEEEEEEEE----CCcEEhHHHHH
Confidence            88899999999998643 22334567899999999999999988877665566777788888887    47999999999


Q ss_pred             HHHHHH
Q 023911          240 ILIRAA  245 (275)
Q Consensus       240 iL~~~~  245 (275)
                      ||.+++
T Consensus       181 IL~~~l  186 (187)
T d1nqza_         181 VLHDLL  186 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999986

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.5e-20  Score=153.09  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=90.7

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      ...+.||.|++++ .+|  +|||++|+..+..+||.|.+| ||++++|| |+.+||+||++|||||+...+..++.+...
T Consensus        27 ~~~h~~v~v~v~~-~~g--~vLl~rR~~~~~~~pg~w~~~~GG~ie~gE-s~~~aa~REl~EE~Gi~~~~~~~~~~~~~~  102 (161)
T d2fkba1          27 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  102 (161)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CCcEeEEEEEEEe-CCC--CEEEEEecCccccccccccccccccccccC-cHHHHHHHHHHHHhCCccceeEEEEEEEee
Confidence            4456788887777 456  799999999888999999886 99999999 999999999999999998888888776443


Q ss_pred             ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .......++.|.+....    .+.++++|++++.|++++++.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~----~~~~~~~Ev~~~~w~~~~el~~~  142 (161)
T d2fkba1         103 DKNCRVWGALFSCVSHG----PFALQEDEVSEVCWLTPEEITAR  142 (161)
T ss_dssp             ETTEEEEEEEEEEECCC----CCCCCTTTEEEEEEECHHHHHTT
T ss_pred             cCCcEEEEEEEEEEECC----CCcCChhHeeEEEEEeHHHHhhh
Confidence            33334444445554332    34678899999999999999764

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=7.3e-20  Score=150.47  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc--c
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL--S  160 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~--~  160 (275)
                      .||.|.|++ ++|  +|||+||+..+..+||.|.+ |||++|+|| |+.+||+||++|||||+....+.+.....+.  .
T Consensus         3 ra~~v~i~n-~~g--~vLl~kRs~~k~~~pg~w~~~pgG~ve~gE-t~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~   78 (153)
T d1hzta_           3 LAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYRATD   78 (153)
T ss_dssp             ECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEEC
T ss_pred             eEEEEEEEE-CCC--EEEEEEeCCCCCCCCCceecccCceeecCC-cHHHHHHHHHHHHcCceeecccceeccccccccc
Confidence            366676777 456  79999999988899999998 999999999 9999999999999999988777654321111  1


Q ss_pred             CCc---e-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 KHL---L-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 ~~~---~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..+   . .++.|.+...    ..+.+|++|++++.|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~----~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          79 PSGIVENEVCPVFAARTT----SALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             TTSCEEEEECCEEEEEBC----SCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             cccccceeEEEEEEEeeC----CCccCChhheeEEEEeeHHHHHHH
Confidence            111   1 1222333332    234678899999999999999764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.79  E-value=1.5e-19  Score=149.25  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=80.2

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF-  158 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~-  158 (275)
                      ..+.+|.+++++ ++|  +|||++|+.++..+||.|++| ||++++|| |+.+||+||++|||||+......+...... 
T Consensus        26 ~~~~~v~~~v~~-~~g--~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gE-s~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~  101 (162)
T d2o5fa1          26 ERVRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSP  101 (162)
T ss_dssp             GGSEEEEEEEEC-TTS--CEEEEEC-------CCSBCCSEEEECBTTC-CHHHHHHHHHHHHHCCCGGGSEEEEEEEECT
T ss_pred             CeEEEEEEEEEc-CCC--CEEEEEeccCccccccccccccCCcccCCC-ChhhhhhhhhhheeCcceeeEEEEEEEEecc
Confidence            345577777776 466  799999999888999999877 99999999 999999999999999998877665444332 


Q ss_pred             -ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          159 -LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 -~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                       .......+..|.+....    .+.++++|++++.|++++++++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~----~~~~~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         102 FQTTLSSFMCVYELRSDA----TPIFNPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             TTSSCSSEEEEEEEECSS----CCCCCTTTCSEEEEECHHHHHHH
T ss_pred             ccccceEEEEEEEEecCC----CccCChhHeeEEEEeeHHHHHHH
Confidence             22223334444444322    34678899999999999999864

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.79  E-value=8e-19  Score=143.08  Aligned_cols=116  Identities=21%  Similarity=0.245  Sum_probs=84.6

Q ss_pred             CeEEEEEEEEeecCCceEEEEEEeCCCC--CCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           82 KKAAVLICLFEGDAGDLRVILTKRSSRM--STHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l--~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      +..|+.+++++ ++|  +|||++|+...  ...+|.|+||||++|+|| |+.+||+||++|||||+....++++.+....
T Consensus        11 ~~~a~~~vi~~-~~g--~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~   86 (158)
T d1sjya_          11 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF   86 (158)
T ss_dssp             CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             ceeEEEEEEEe-CCC--EEEEEEEecCCCCCCCCCcEECCceecCCCC-CHHHHHHHHHHHHhCccceeeEEEEEEEEEC
Confidence            34455555665 456  79999998654  246799999999999999 9999999999999999999989888776544


Q ss_pred             cC-CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          160 SK-HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ~~-~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .. .....+.|++......... ..+.+|+.++.|++++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~l  129 (158)
T d1sjya_          87 PDGVLILRHVWLAEPEPGQTLA-PAFTDEIAEASFVSREDFAQL  129 (158)
T ss_dssp             TTSCEEEEEEEEEEECSSCCCC-CCCCSSEEEEEEECHHHHHHH
T ss_pred             CCCCEEEEEEEEEEEcCCcccC-CCCCcceEEEEEEEHHHHhhh
Confidence            32 3334455666555433322 234479999999999998763

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.77  E-value=1.4e-18  Score=141.75  Aligned_cols=113  Identities=17%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-  161 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-  161 (275)
                      ..+|-++++..++++++|||++|+..  +++|+|+||||++|.|| |+.+||+||++|||||++..++.++.+...... 
T Consensus        10 ~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (147)
T d2fb1a2          10 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP   86 (147)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred             ceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCC-CHHHHHHHHHHHHhCCcccceeeeeEecCCcccC
Confidence            44554445433456679999999763  57899999999999999 999999999999999999999999987654422 


Q ss_pred             -CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911          162 -HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       162 -~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                       ...+...|++.+... .  .....+|.+++.|++++++.+
T Consensus        87 ~~~~v~~~~~~~~~~~-~--~~~~~~e~~~~~W~~~~~lp~  124 (147)
T d2fb1a2          87 GERVVSIAYYALININ-E--YDRELVQKHNAYWVNINELPA  124 (147)
T ss_dssp             SSCEEEEEEEEECCTT-S--SCHHHHHHTTEEEEETTSCCC
T ss_pred             CCceEEEEEEEEecCC-c--ccCCCcchhheEEecHHhchh
Confidence             223334566666532 1  234667899999999998854

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.8e-19  Score=142.72  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .||.| +++ ++|  +|||++|+.. ..++|.|+||||++|.|| |+.+||.||++||||+.+....+++...+......
T Consensus         6 vav~i-i~~-~~~--~vLl~~R~~~-~~~~g~W~~PgG~ve~gE-s~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~   79 (129)
T d1puna_           6 IAVGI-IRN-ENN--EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRH   79 (129)
T ss_dssp             EEEEE-CBC-TTS--CEEEBCCCSS-CSCTTCCBCSCCSCTTTS-CTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEE
T ss_pred             EEEEE-EEE-CCC--EEEEEEecCC-CCCCCcEECCcceecCCC-chhHHHHHHHHHHhCCccccceeeeEEeecccccc
Confidence            44444 333 455  7999999865 568999999999999999 99999999999999999988887777766555544


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..++.|.+....     ..+...|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~~~~~-----~~~~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          80 ITLWFWLVERWE-----GEPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEEEEECCCCS-----SCCCTTSSSCCEEECGGGCCTT
T ss_pred             eeEEEEEEeecc-----CcCCCCccceEEEEEHHHcccC
Confidence            445555443221     1334578899999999998653

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=1.8e-18  Score=138.99  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      ++|.+++.+  +|  +|||++|...  ...|.|+||||++|.|| |+.+||+||++||||+.......++.........+
T Consensus         4 v~va~ii~~--~~--k~Llv~r~~~--~~~~~w~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   76 (146)
T d2b0va1           4 VTVAAVIEQ--DD--KYLLVEEIPR--GTAIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG   76 (146)
T ss_dssp             EEEEEECEE--TT--EEEEEEECSS--SSCCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT
T ss_pred             EEEEEEEEe--CC--EEEEEEEecC--CCCCEEECCeeeECCCC-CHHHHHHHHHHHhheeecccceEEEEEEEecCCCC
Confidence            455544433  46  8999999874  35789999999999999 99999999999999999888888877765554433


Q ss_pred             e--EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          164 L--RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       164 ~--~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      .  ....|++.+.....  ....++|+.++.|++++++.+..
T Consensus        77 ~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~~  116 (146)
T d2b0va1          77 TTYLRFTFSGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAKQ  116 (146)
T ss_dssp             EEEEEEEEEEEEEEECT--TSCCCTTEEEEEEEEHHHHHHTG
T ss_pred             eEEEEEEEEEEeecCCC--CCCCCcceeEEEEeeHHHHhhCc
Confidence            2  33445555433211  23355799999999999997654

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.7e-18  Score=138.21  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      .||++++.+  ++  ++||++|...   .+|.|+||||++|+|| |+.+||+||++||||+.+.....++......  ..
T Consensus         4 paViv~i~~--~~--~vLL~~~~~~---~~g~w~lpGG~ve~GE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~   73 (131)
T d1vk6a2           4 PCIIVAIRR--DD--SILLAQHTRH---RNGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQ   73 (131)
T ss_dssp             EEEEEEEEE--TT--EEEEEEETTT---CSSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TE
T ss_pred             cEEEEEEEe--CC--EEEEEEeccC---CCCCEecccCCCcCCC-cHHHHHHHHHHHHhCCcccceeEEEEeccCc--Cc
Confidence            467666655  34  8999998753   3689999999999999 9999999999999999998888887654432  23


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ...+.|++.....   .+.++++|+.++.|++++++...
T Consensus        74 ~~~~~f~~~~~~~---~~~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          74 SLMTAFMAEYDSG---DIVIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEEEEEEEEC---CCCCCTTTEEEEEEEETTSCCSC
T ss_pred             eEEEEEEEEEcCC---cccCCCccEEEEEEEcHHHHhhC
Confidence            3455566665432   34678899999999999998543

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.7e-18  Score=138.80  Aligned_cols=111  Identities=20%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      +.++++++..  +|  +|||++|+.  ..+.|.|++|||++|.|| |+.+||+||++|||||++...+.++.+.......
T Consensus         5 r~~~~v~i~~--~~--~vLL~~r~~--~~~~g~W~lPGG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   77 (156)
T d1irya_           5 RLYTLVLVLQ--PQ--RVLLGMKKR--GFGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVGE   77 (156)
T ss_dssp             EEEEEECEEC--SS--EEEEEEESS--SSSBTCEECBCCBCCTTC-CHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTC
T ss_pred             EEEEEEEEEE--CC--EEEEEEecC--CCCCCEEECcEeEecCCC-CHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCC
Confidence            4455554554  45  899999975  356899999999999999 9999999999999999998888888776555443


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ......+++.....   ...+.+.|..++.|++++++....
T Consensus        78 ~~~~~~~~~~~~~~---~~~~~~~ee~~~~W~~~~~l~~~~  115 (156)
T d1irya_          78 PELMDVHVFCTDSI---QGTPVESDEMRPCWFQLDQIPFKD  115 (156)
T ss_dssp             SCEEEEEEECCCCB---CSCCCCCSSEEEEEEETTCCCSTT
T ss_pred             CEEEEEEEEEEEee---cCcccCCchhheEEeEHHHCCcCC
Confidence            33333333332221   112333444677999999987654

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=1.9e-17  Score=131.23  Aligned_cols=112  Identities=25%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc---
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---  159 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---  159 (275)
                      ++|-+|++.. .+++.++||.+|+.    .+|.|+||||++|.|| |+.+||+||++||||++...+..+.......   
T Consensus         3 raag~vv~~~-~~~~~~~Ll~~r~~----~~g~W~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   76 (137)
T d1ktga_           3 KAAGLVIYRK-LAGKIEFLLLQASY----PPHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYE   76 (137)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEEEESS----TTCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEE-cCCCEEEEEEEEcC----CCCcEeCcccccccCC-CHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecC
Confidence            3444443443 45677899999975    3689999999999999 9999999999999999998877665443321   


Q ss_pred             cCC-ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          160 SKH-LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~~~-~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ... ...+..|++......  ...++ +|+.++.|++++++.+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~--~~~~~-~E~~~~~W~~~~e~~~~~  118 (137)
T d1ktga_          77 AKGKPKSVKYWLAKLNNPD--DVQLS-HEHQNWKWCELEDAIKIA  118 (137)
T ss_dssp             ETTEEEEEEEEEEEECSCC--CCCCC-TTEEEEEEECHHHHHHHH
T ss_pred             CCcceEEEEEEEEEecCCC--CcCCC-cceEEEEEEEHHHHHHhc
Confidence            111 223444555554432  33445 689999999999987653

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=4.6e-18  Score=138.94  Aligned_cols=105  Identities=19%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             EEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-CceEEEE
Q 023911           90 LFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-HLLRVVP  168 (275)
Q Consensus        90 L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-~~~~V~p  168 (275)
                      +++.+++  +|||++|+.... +.|.|+||||++|+|| |+.+||+||++|||||.+....+++........ ....+..
T Consensus        15 i~~~~~~--~lLl~~R~~~~~-~~~~w~~PGG~ve~gE-s~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   90 (155)
T d2b06a1          15 IEDLETQ--RVVMQYRAPENN-RWSGYAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVIC   90 (155)
T ss_dssp             EEETTTT--EEEEEEEC------CCEEECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCC--EEEEEEECCCCC-CCCcEECceeEEcCCC-CHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEEEEE
Confidence            4454444  899999987654 4466999999999999 999999999999999999888888776554432 2233334


Q ss_pred             EEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          169 VIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       169 ~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      |.+....     ..+.+.|..++.|++++++.+..
T Consensus        91 ~~~~~~~-----~~~~~~e~~~~~W~~~~el~~l~  120 (155)
T d2b06a1          91 YKATEFS-----GTLQSSEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             EEECEEE-----ECCCCBTTBEEEEEEGGGGGGSC
T ss_pred             EEEEecC-----CccCCCchheEEEEEHHHhccCC
Confidence            4442211     12445788999999999997743

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.4e-18  Score=134.63  Aligned_cols=114  Identities=25%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      ..|+.|.+|++..  +++..+||.+|..    ++|.|+||||++|+|| |+.+||+||++|||||.+....+++.+....
T Consensus         9 ~~r~~a~~vv~~~--~~~~~~lL~~~~~----~~~~W~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (135)
T d2fvva1           9 GYKKRAACLCFRS--ESEEEVLLVSSSR----HPDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE   81 (135)
T ss_dssp             SCEEEEEEEEESS--TTCCEEEEEECSS----CTTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred             CCceEEEEEEEEe--cCCCEEEEEEEeC----CCCcEECCccccCCCC-CHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Confidence            3445554444433  2233677777754    4799999999999999 9999999999999999988888888776555


Q ss_pred             cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ......++.+....... .  ...+.+|+.++.|++++++.+.-
T Consensus        82 ~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~~~W~~~~e~~~~l  122 (135)
T d2fvva1          82 RKHRTYVYVLIVTEVLE-D--WEDSVNIGRKREWFKIEDAIKVL  122 (135)
T ss_dssp             TTEEEEEEEEEEEEECS-S--CHHHHHHCCCEEEEEHHHHHHHH
T ss_pred             CCccEEEEEEEEEeecC-C--CCCCCCceeEEEEEEHHHHHHHH
Confidence            44444444443322211 1  12345788899999999988753

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.8e-17  Score=131.05  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=75.3

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC-c
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH-L  163 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~-~  163 (275)
                      +|.+++++ +++  +|||++|.      .|.|+||||++|.|| |+.+||+||++|||||+......++......... .
T Consensus         4 ~agavv~~-~~~--~vLl~~~~------~g~w~~PgG~ve~gE-t~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~   73 (126)
T d1vcda1           4 GAGGVVFN-AKR--EVLLLRDR------MGFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE   73 (126)
T ss_dssp             EEEEEEEC-TTS--CEEEEECT------TSCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred             EEEEEEEE-CCC--EEEEEEcC------CCCEECCccccCCCC-CHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeE
Confidence            44555566 345  78888764      478999999999999 9999999999999999988887777655443322 2


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..++.|++....    .+.++ +|+.++.|++++++.+.
T Consensus        74 ~~~~~~~~~~~~----~~~~~-~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          74 REVHWFLMRGEG----APRLE-EGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEES----CCCCC-TTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEEcC----CCCCC-ccceEEEEEEHHHHhhc
Confidence            335555555433    22333 68899999999998764

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.6e-17  Score=133.63  Aligned_cols=114  Identities=15%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEeccccc
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLS  160 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~  160 (275)
                      ..+|.+++++ .+|  +|||++|+..  .++|.|++|||++++|| |+.+||+||++|||||+..  ....++.......
T Consensus        18 ~~~v~~vi~~-~~~--~vLL~kR~~~--~~~g~W~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   91 (160)
T d1ryaa_          18 LVSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEES
T ss_pred             EEEEEEEEEe-CCC--eEEEEEeCCC--CCCCcEecccccccCCC-cHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecc
Confidence            4567776776 456  7999999863  57899999999999999 9999999999999999765  3455555443321


Q ss_pred             ----CC--ceEE--EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911          161 ----KH--LLRV--VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR  205 (275)
Q Consensus       161 ----~~--~~~V--~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~  205 (275)
                          ..  ..+.  ..|.+.....   ....+.+|+.++.|++++++.+..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~E~~e~~W~~~~el~~~~~~  141 (160)
T d1ryaa_          92 DNFSGTDFTTHYVVLGFRFRVSEE---ELLLPDEQHDDYRWLTSDALLASDNV  141 (160)
T ss_dssp             SBTTBSSSCEEEEEEEEEEECCGG---GCCCCSSSEEEEEEECHHHHHHCTTB
T ss_pred             ccccCCCcceEEEEEEEEEEecCC---CccCCCcceEEEEEEEHHHhhcCccc
Confidence                11  1222  2223333321   23445689999999999999876653

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.70  E-value=5.5e-17  Score=134.01  Aligned_cols=112  Identities=19%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec--ccc-
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE--PFL-  159 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~--~~~-  159 (275)
                      |.+|.++|++ ++|  +|||++|+.    ++|.|+||||++|.|| |+.+||+||++|||||............  ... 
T Consensus        14 R~~Vg~vI~n-~~~--~vLL~kR~~----~~g~W~~PgG~ve~gE-t~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T d1jkna_          14 RRNVGICLMN-NDK--KIFAASRLD----IPDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEESS----STTCEECCEECCCTTC-CHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECC
T ss_pred             cccEEEEEEe-CCC--EEEEEEEcC----CCCcccCccceEcCCC-ChhHHHHHHHHHhhcccccccccccccccccccc
Confidence            4567777777 456  799999985    4789999999999999 9999999999999999987655432211  000 


Q ss_pred             -------------cCCceEEEEEEEEEcCC-CCCCCCC---ChhhhhcceecChhhhhcc
Q 023911          160 -------------SKHLLRVVPVIGILSNK-KAFTPTP---NPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 -------------~~~~~~V~p~v~~l~~~-~~~~~~~---~~~EV~~v~wvpl~ell~~  202 (275)
                                   .......+.|+..+... ....+..   ...|++++.|++++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T d1jkna_          86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             HHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHH
T ss_pred             ceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHh
Confidence                         01112233444444322 1221111   2348899999999999875

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=1.1e-16  Score=137.01  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=75.8

Q ss_pred             EeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEecccc-cCCceEE-
Q 023911           91 FEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFL-SKHLLRV-  166 (275)
Q Consensus        91 ~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~-~~~~~~V-  166 (275)
                      ++.++|+++|||++|+..  ++.|.|+||||++|.|| |+.+||+||++|||||....  +..++.+.... ...+..+ 
T Consensus        47 ~~~~~~~l~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~  123 (202)
T d2fmla2          47 YNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVT  123 (202)
T ss_dssp             EETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEE
T ss_pred             EecCCCeeEEEEEEecCC--CCCCcEECCEEeecCCC-CHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEE
Confidence            343456789999999753  57899999999999999 99999999999999997654  45555554322 1223333 


Q ss_pred             EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          167 VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       167 ~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ..|++.+... .   ....+|+.++.|+|++++...
T Consensus       124 ~~~~~~~~~~-~---~~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         124 VSYLAFIGEE-P---LIAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             EEEEEECCCC-C---CCCCTTEEEEEEEEEEEETTE
T ss_pred             EEEEEEeCCC-C---cCCCcceeeEEEEeHHHCcch
Confidence            3455555432 1   234589999999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=2.2e-17  Score=134.33  Aligned_cols=104  Identities=20%  Similarity=0.132  Sum_probs=64.6

Q ss_pred             EEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEE
Q 023911           90 LFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPV  169 (275)
Q Consensus        90 L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~  169 (275)
                      +++.+.+  +|||+||..    ..|.|+||||++|.|| |+.+||+||++|||||+.............. .....++.|
T Consensus         9 i~~~~~~--kvLLvk~~~----~~~~W~lPgG~ie~gE-s~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~-~~~~~~~~~   80 (151)
T d2a6ta2           9 MLDMSMQ--QCVLVKGWK----ASSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFIDMT-IRGQNVRLY   80 (151)
T ss_dssp             EBCSSSS--EEEEEEESS----TTCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE-ETTEEEEEE
T ss_pred             EEECCCC--EEEEEEEeC----CCCCEECCcccccCCC-CHHHHHHHHHHHHhCCCceeeeecceEEeec-ccCceEEEE
Confidence            4453334  899999864    3678999999999999 9999999999999999876543221111111 111223333


Q ss_pred             EEE-EcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          170 IGI-LSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       170 v~~-l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ++. +.....+. ..+.+|++++.|+++++|.+.
T Consensus        81 ~~~~~~~~~~~~-~~~~~Ei~~~~W~~~~el~~~  113 (151)
T d2a6ta2          81 IIPGISLDTRFE-SRTRKEISKIEWHNLMDLPTF  113 (151)
T ss_dssp             EECCCCTTCCCC-------EEEEEEEEGGGSTTC
T ss_pred             EEEEeccCCccc-ccCCCccceEEEEEHHHhhhh
Confidence            332 22222222 234579999999999998764

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=5.9e-17  Score=137.06  Aligned_cols=113  Identities=20%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911           83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH  162 (275)
Q Consensus        83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~  162 (275)
                      ..+|+|+...  ++  +|+|+++- +.......|+||||++|+|| |+.+||+||++||||+.+..+.+++.+....+..
T Consensus        48 ~~~v~vi~~~--~~--~vlLvrq~-R~~~~~~~~elP~G~ie~gE-~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~  121 (186)
T d1vhza_          48 REAVMIVPIV--DD--HLILIREY-AVGTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF  121 (186)
T ss_dssp             CCEEEEEEEE--TT--EEEEEEEE-ETTTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTC
T ss_pred             CcEEEEEEcc--CC--EEEEEEee-ecCCCceEeecccccCCCCc-CHHHHHHHHHHHHhccccccceecceeecccccc
Confidence            3455554443  34  78887643 23345667999999999999 9999999999999999999999999886655555


Q ss_pred             ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ...++.|++......  ...++++|+.++.|+|++++.+.-
T Consensus       122 ~~~~~~~~a~~~~~~--~~~~de~E~~~~~~~~~~e~~~~i  160 (186)
T d1vhza_         122 SSKMNIVVAQDLYPE--SLEGDEPEPLPQVRWPLAHMMDLL  160 (186)
T ss_dssp             CCEEEEEEEEEEEEC--CCCCCCSSCCCEEEEEGGGGGGGG
T ss_pred             ceEEEEEEEEecccc--cCCCCCCcEEEEEEEeHHHHHHHH
Confidence            556777776543222  235678899999999999987653

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=9.1e-17  Score=132.54  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL  164 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~  164 (275)
                      ||.|++++  +|  +|||+++-. .....+.|+||||++|+|| ++.+||+||++||||+..+ +..++.+.........
T Consensus        26 aV~vl~~~--~~--~vlLv~q~R-~~~~~~~~elP~G~ve~gE-~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~   98 (158)
T d1v8ya_          26 AVAVIALR--EG--RMLFVRQMR-PAVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDE   98 (158)
T ss_dssp             EEEEEEEE--TT--EEEEEECCB-TTTTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCC
T ss_pred             EEEEEEEE--CC--EEEEEEeee-cCCCCceEecchhhccccC-CHHHHHHHHHHhhcCCcce-eeeecceecCCCcceE
Confidence            45555554  35  799988643 2244567999999999999 9999999999999999764 5556655444444455


Q ss_pred             EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus        99 ~~~~f~a~~~~~--~~~~~d~~E~~ev~w~~~~e~~~~  134 (158)
T d1v8ya_          99 KTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER  134 (158)
T ss_dssp             EEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred             EEEEEEEccccc--cccCCCCCeeEEEEEEEHHHHHHH
Confidence            677777754432  234667889999999999999864

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.63  E-value=5e-16  Score=124.72  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911           81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS  160 (275)
Q Consensus        81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~  160 (275)
                      .|.++ .+++++.++.  .+|++++.      .|.|+||||++|+|| |+.+||+||++|||||+......++.+.....
T Consensus        16 ~r~~~-~~vi~~~~~~--~lll~~~~------~~~w~lPgG~ie~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   85 (147)
T d2azwa1          16 TRYAA-YIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFY   85 (147)
T ss_dssp             ECCEE-EEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEE
T ss_pred             CCCeE-EEEEEECCCC--EEEEEEcC------CCeEECcEeEeCCCC-CHHHHHHHHHHhhhceeeeeeeEEEEEEEEee
Confidence            34444 4445664333  55655543      478999999999999 99999999999999999888888777654431


Q ss_pred             --CCc----eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          161 --KHL----LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       161 --~~~----~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                        ...    ...+.|.+.....   . ....+|+.++.|++++++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~e~~~~~W~~~~e~~~~  129 (147)
T d2azwa1          86 SNHRQTAYYNPGYFYVANTWRQ---L-SEPLERTNTLHWVAPEEAVRL  129 (147)
T ss_dssp             ETTTTEEEEEEEEEEEEEEEEE---C-SSCC-CCSEEEEECHHHHHHH
T ss_pred             eccCCceEEEEEEEEEEEeccc---c-CCCCccceEEEEEEHHHHHHH
Confidence              111    1222333332221   1 223478899999999998754

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.8e-16  Score=134.68  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCC-CCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911           85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAE-EGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL  163 (275)
Q Consensus        85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE-~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~  163 (275)
                      +|+|+.++ ++|  +|||+++-.. ......|+||||++| +|| ++.+||+||++||||+....++.++.+.+..+...
T Consensus        40 ~V~vl~~~-~~~--~ilLvrq~R~-~~~~~~welPaG~ie~~gE-~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~  114 (202)
T d1mqea_          40 AVAIVAMD-DNG--NIPMVYQYRH-TYGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPGFSD  114 (202)
T ss_dssp             EEEEEECC-TTS--EEEEEEEEET-TTTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBC
T ss_pred             eEEEEEEC-CCC--EEEEEEeccc-ccCceEEeccccccccCCC-CHHHHHHHHHhhccccccccceEeeeeeccCccCC
Confidence            56655555 345  8899875321 233457999999999 688 99999999999999999999999999877766666


Q ss_pred             eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911          164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ..++.|++............+.+|..++.|+|++++.+.-
T Consensus       115 ~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i  154 (202)
T d1mqea_         115 ESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRV  154 (202)
T ss_dssp             CCEEEEEEEEEEECCC----------CEEEEEHHHHHHHH
T ss_pred             cEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHH
Confidence            6677777664322111112233456689999999998754

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-15  Score=120.62  Aligned_cols=103  Identities=18%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----cCCceEEEEEE
Q 023911           95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL----SKHLLRVVPVI  170 (275)
Q Consensus        95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~----~~~~~~V~p~v  170 (275)
                      +++.++||++|+..    .+.|.||||++|.|| |+.+||+||++||||+....+.+++.+....    .........|+
T Consensus        26 ~~~~~~LL~~~~~~----~~~W~lPgG~ie~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (153)
T d1xsba_          26 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL  100 (153)
T ss_dssp             STTEEEEEEEESST----TCCEECCEEECCSSS-CHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEESSSCEEEEEEEE
T ss_pred             CCCCEEEEEEecCC----CCcEECCeeecCCCC-CHHHHHHHHHHHHhCCccceeeeeccceeeecccccCceeEEEEEE
Confidence            45679999999874    457999999999999 9999999999999999998888776543222    12222334445


Q ss_pred             EEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911          171 GILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN  204 (275)
Q Consensus       171 ~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~  204 (275)
                      +..... .....+ .+|+.++.|++++++.+...
T Consensus       101 ~~~~~~-~~~~~~-~~E~~~~~W~~~~e~~~~~~  132 (153)
T d1xsba_         101 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQLAQ  132 (153)
T ss_dssp             EEESCT-TCCCCC-CTTEEEEEEECHHHHHHHTC
T ss_pred             EEEeec-ccccCC-CcceeEEEEEEHHHHHHhcC
Confidence            544432 222333 47899999999999887543

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.58  E-value=3.2e-16  Score=125.70  Aligned_cols=99  Identities=15%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc---cCCceEEEEEEEEEcC
Q 023911           99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---SKHLLRVVPVIGILSN  175 (275)
Q Consensus        99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---~~~~~~V~p~v~~l~~  175 (275)
                      +|||++|..     .|.|+||||++|.|| ++.+||+||++|||||+......+.......   .........+......
T Consensus        13 kvLl~~r~~-----~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (152)
T d1k2ea_          13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPE   86 (152)
T ss_dssp             EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECSS
T ss_pred             EEEEEEEcC-----CCeEECCeeEEeCCc-cHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEEEEecCC
Confidence            899999863     688999999999999 9999999999999999876555443332221   1111111111111110


Q ss_pred             CC------CCCCCCChhhhhcceecChhhhhccC
Q 023911          176 KK------AFTPTPNPAEVEEVFDAPLEMFIKDE  203 (275)
Q Consensus       176 ~~------~~~~~~~~~EV~~v~wvpl~ell~~~  203 (275)
                      ..      .+...++.+|+.++.|+|++++.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  120 (152)
T d1k2ea_          87 ETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIE  120 (152)
T ss_dssp             CEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSC
T ss_pred             CceEEEEEeEeeecCCCCcceEEEeEHHHHhhCC
Confidence            00      00012356789999999999987643

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4.3e-15  Score=127.86  Aligned_cols=116  Identities=20%  Similarity=0.136  Sum_probs=81.3

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCCC--C--CCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSRM--S--THSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL  159 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~l--~--~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~  159 (275)
                      .||.|++++.+.+  +|+|++.-...  +  ..+..|+||+|.+|+|| |+++||+||+.||||+.+..++.++.+.+..
T Consensus        58 ~~v~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE-~p~~aA~REL~EEtG~~~~~l~~l~~~~~sp  134 (209)
T d1g0sa_          58 HAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLASP  134 (209)
T ss_dssp             CEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEESCT
T ss_pred             CEEEEEEEEecCC--eEEEEEEEeccccccCCCceEEeeceeecCCCc-CHHHHHHHHHHhhhcccccceeeccccccCC
Confidence            3444444543344  67777653211  0  12336899999999999 9999999999999999999999999987776


Q ss_pred             cCCceEEEEEEEEEcCCC--CCCCCCChhhhhcceecChhhhhcc
Q 023911          160 SKHLLRVVPVIGILSNKK--AFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       160 ~~~~~~V~p~v~~l~~~~--~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      +.+...++.|++.+....  ......+++|..+++|+|++++++.
T Consensus       135 g~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~  179 (209)
T d1g0sa_         135 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             TTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             cccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHH
Confidence            667777888888765321  1112346678889999999998764

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.56  E-value=2.9e-15  Score=118.49  Aligned_cols=96  Identities=22%  Similarity=0.252  Sum_probs=73.0

Q ss_pred             cCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEE
Q 023911           94 DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGIL  173 (275)
Q Consensus        94 ~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l  173 (275)
                      ++|  +|||+||... +.++|.|+||||++|.++ + .+++.||++||+|++....+.++.+.+.+++....+++|.+..
T Consensus        14 ~~g--~iLl~kR~~~-~~~~GlWefP~g~~e~~~-~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~~~~~   88 (127)
T d1rrqa2          14 DEG--RVLIRKRDST-GLLANLWEFPSCETDGAD-G-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRL   88 (127)
T ss_dssp             SSS--EEEEEECCSS-STTTTCEECCEEECTTTC-C-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEEEEEE
T ss_pred             CCC--EEEEEECCCC-CCCCCceecccccccCCC-C-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEEEEEE
Confidence            456  8999999754 579999999999999766 5 7899999999999988777778888888887777788888776


Q ss_pred             cCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          174 SNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      ....        .+.+++.|++++++.+-
T Consensus        89 ~~~~--------~~~~~~~Wv~~~el~~~  109 (127)
T d1rrqa2          89 VHGG--------PVEEPYRLAPEDELKAY  109 (127)
T ss_dssp             ECCS--------CCCTTEEEEEGGGGGGS
T ss_pred             CCCC--------ccccceEEeeHHHHhHC
Confidence            5321        23357889999998654

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.4e-13  Score=113.96  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=77.9

Q ss_pred             EEEEEEEEeecCCceEEEEEEeCCC-----CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911           84 AAVLICLFEGDAGDLRVILTKRSSR-----MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF  158 (275)
Q Consensus        84 aAVlv~L~~~~~g~~~VLL~rRs~~-----l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~  158 (275)
                      -||.|++++.+++  +|+|++.-..     .....-.|.+|||.+| +| ++.+||+||+.||||+.+..+..++.+.+.
T Consensus        44 ~aV~Vl~~~~~~~--~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e-~p~~aA~REL~EEtG~~~~~~~~lg~~~~s  119 (189)
T d1viua_          44 NGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELYMS  119 (189)
T ss_dssp             CEEEEEEEETTTT--EEEEEEEECHHHHTTTCSSCEEEECEEEECT-TS-CHHHHHHHHHHHHHSCCCCCCEEEEEEESC
T ss_pred             CEEEEEEEEcCCC--EEEEEEeeccceeeccCCCcceecCcEEecC-CC-CHHHHHHHHHHHhhCCcceEEEEcceeecC
Confidence            3566656654445  6777764210     0011224678999998 56 579999999999999999999999988666


Q ss_pred             ccCCceEEEEEEEEEcCCCCCC-CCCChhhhhcceecChhhhhcc
Q 023911          159 LSKHLLRVVPVIGILSNKKAFT-PTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       159 ~~~~~~~V~p~v~~l~~~~~~~-~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+.+...++.|++.+.+..... ...+++|..++.|+|++++.+.
T Consensus       120 pG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~  164 (189)
T d1viua_         120 PGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEM  164 (189)
T ss_dssp             TTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHH
T ss_pred             ccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHH
Confidence            6666677899998865432211 2346678889999999998765

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.39  E-value=4.3e-13  Score=114.12  Aligned_cols=115  Identities=21%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             CCCeEEEEEEEEeecCC--------ceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEE
Q 023911           80 RPKKAAVLICLFEGDAG--------DLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEV  151 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g--------~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~  151 (275)
                      +.|++++++ ++..+.+        +..||+++|.      .|.|+||||++|+||.++++||.||+.||||+.+..+.+
T Consensus        18 g~r~a~~~~-~~~~~~~~~~~~~~~~~~vl~~~r~------~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l   90 (196)
T d1u20a1          18 GYKHACHAL-LHAPSQAKLFDRVPIRRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV   90 (196)
T ss_dssp             SCEEEEEEE-EEEECCCEETTTEECCEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCC
T ss_pred             CcceEEEEE-EEcCCCceEEEEecCCcEEEEEEec------CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEE
Confidence            456666655 4432333        2257888874      589999999999999446789999999999998876654


Q ss_pred             EEE--ecc-cccC-CceEEEEEEEEEcCC-------CCCCCCCChhhhhcceecChhhhhc
Q 023911          152 VTV--LEP-FLSK-HLLRVVPVIGILSNK-------KAFTPTPNPAEVEEVFDAPLEMFIK  201 (275)
Q Consensus       152 lg~--l~~-~~~~-~~~~V~p~v~~l~~~-------~~~~~~~~~~EV~~v~wvpl~ell~  201 (275)
                      +..  +.. .... .....+.|++.+...       ........+.|+.++.|||+.++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          91 TEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             EeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            321  111 1112 233344455554310       0112234557899999999998743

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=103.00  Aligned_cols=115  Identities=15%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhC--CCCcceEEEEEecc
Q 023911           80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG--LDPLLVEVVTVLEP  157 (275)
Q Consensus        80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtG--L~~~~~~~lg~l~~  157 (275)
                      +.+..+|+|+...+ ..+.+|||.+|+.. +.++|.|+||||.+|.+| +..++|+||..+|.+  ++......++.+.+
T Consensus        10 ~~~~~~~~vv~~~~-~~~~~iLl~kR~~~-g~l~GlWefP~~~~~~~e-~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H   86 (142)
T d1x51a1          10 REESSATCVLEQPG-ALGAQILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQELQRWAGPLPATHLRHLGEVVH   86 (142)
T ss_dssp             TEEEEEEEEEEEEC-SSSEEEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHHHHHHSCCCCSTTCEECCCBCC
T ss_pred             CEEEEEEEEEEecC-CCCCEEEEEECCCC-CCCCcceeeeEeeccCCc-chhHHHHHHHHHHhccCcceeeeeeecccee
Confidence            33455555543322 12348999999765 689999999999999999 787777766555544  45666778888888


Q ss_pred             cccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911          158 FLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD  202 (275)
Q Consensus       158 ~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~  202 (275)
                      .+++....+++|.+.+....     +...|.++..|++.+++.+-
T Consensus        87 ~fsH~~~~~~v~~~~~~~~~-----~~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          87 TFSHIKLTYQVYGLALEGQT-----PVTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             BCSSCEEEEEEEEEECSSCC-----CCCCCCTTEEEEEHHHHHHS
T ss_pred             ccCCcceEEEEEEEEEeCCC-----cccccCccCEEeeHHHcccc
Confidence            88888888888888876432     23356788999999998753

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.6e-12  Score=115.46  Aligned_cols=116  Identities=18%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             CCCCeEEEEEEEEee-------------cCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCC
Q 023911           79 FRPKKAAVLICLFEG-------------DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLD  145 (275)
Q Consensus        79 ~~~r~aAVlv~L~~~-------------~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~  145 (275)
                      .++.+||-.|+-.-.             ..+.++||+++|..     .|+|+||||++|+|| ++.+||+||+.||||+.
T Consensus       107 wGpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d-----~g~WaLPGG~Vd~GE-s~~~Aa~REl~EETGl~  180 (292)
T d1q33a_         107 WGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD-----CGEWAIPGGMVDPGE-KISATLKREFGEEALNS  180 (292)
T ss_dssp             SEEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTT-----TCSEECCCEECCTTC-CHHHHHHHHHHHHHSCG
T ss_pred             cCccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecC-----CCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcc
Confidence            456788887754210             11237899999975     689999999999999 99999999999999997


Q ss_pred             Ccce---------------------EEEEEecccc-cCCceEEE-EEEEEEcCCCC---CCCCCChhhhhcceecChhhh
Q 023911          146 PLLV---------------------EVVTVLEPFL-SKHLLRVV-PVIGILSNKKA---FTPTPNPAEVEEVFDAPLEMF  199 (275)
Q Consensus       146 ~~~~---------------------~~lg~l~~~~-~~~~~~V~-p~v~~l~~~~~---~~~~~~~~EV~~v~wvpl~el  199 (275)
                      ....                     ...+.++... +.....++ .|.+.......   ..+. ..+|+.++.|++++++
T Consensus       181 ~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~~~~~l~-~~dEa~~v~W~~vde~  259 (292)
T d1q33a_         181 LQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLE-AGDDAGKVKWVDINDK  259 (292)
T ss_dssp             GGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCC-CCTTCSEEEEEECCTT
T ss_pred             cccccccccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccccccccC-CCCchheEEEEEhhcc
Confidence            6432                     1223333222 22222232 33344332211   1122 3479999999999987


Q ss_pred             hc
Q 023911          200 IK  201 (275)
Q Consensus       200 l~  201 (275)
                      .+
T Consensus       260 ~~  261 (292)
T d1q33a_         260 LK  261 (292)
T ss_dssp             CC
T ss_pred             cc
Confidence            53